Citrus Sinensis ID: 008262
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 572 | 2.2.26 [Sep-21-2011] | |||||||
| O22285 | 694 | Probable methyltransferas | yes | no | 0.982 | 0.809 | 0.665 | 0.0 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.973 | 0.816 | 0.679 | 0.0 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.949 | 0.829 | 0.634 | 0.0 | |
| Q9SIZ3 | 589 | Probable methyltransferas | no | no | 0.788 | 0.765 | 0.459 | 1e-118 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.716 | 0.494 | 0.495 | 1e-118 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.716 | 0.458 | 0.490 | 1e-116 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.704 | 0.660 | 0.496 | 1e-116 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.716 | 0.532 | 0.484 | 1e-115 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.736 | 0.692 | 0.467 | 1e-115 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.800 | 0.594 | 0.448 | 1e-114 |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/607 (66%), Positives = 471/607 (77%), Gaps = 45/607 (7%)
Query: 3 NPLSNTDLFK------LSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYV 55
PL+N DLFK +SAL+FV+ FFYLGK WSD G Q+++FFSS TS + + V
Sbjct: 2 KPLTNGDLFKSPTLIKISALVFVTVAFFYLGKHWSDDGYQQLVFFSSSTSGSSIPE---V 58
Query: 56 SLSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPE------------- 102
S+SPN N+ F++S++I N + + PA + PP +
Sbjct: 59 SVSPNSNRVFNLSAIIPTNHTQ-----IEIPATIRQQPPSVVADTEKVKVEANPPPPPPP 113
Query: 103 ------------RFGIVNEDGTMSDDFEIGEYDPDLVE-----TEWNGDRNGTEATKSFK 145
FGIV+ +G MSDDFE+GE + D VE TE ++ ++ +
Sbjct: 114 SPSPPPPPGPVKSFGIVDANGVMSDDFEVGEVESDTVEDWGNQTEIVEAKSDGDSKARVR 173
Query: 146 ITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTP 205
I ++ MCP SMREYIPCLDN + IK+LKST++GERFERHCP G GLNCLVP PKGY+ P
Sbjct: 174 IKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQP 233
Query: 206 IPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKM 265
IPWP+SR+EVW++NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KM
Sbjct: 234 IPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKM 293
Query: 266 VPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA 325
V DIT+G HIRV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM A
Sbjct: 294 VSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAA 353
Query: 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385
AFATRRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A
Sbjct: 354 AFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPA 413
Query: 386 QEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVW 445
EE W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD D+PDNVW
Sbjct: 414 LEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVW 473
Query: 446 YVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII 505
Y +LK CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII
Sbjct: 474 YTNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEII 533
Query: 506 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL 565
YVRAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL
Sbjct: 534 GGYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 566 IGVMHDW 572
+GVMHDW
Sbjct: 594 LGVMHDW 600
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/578 (67%), Positives = 469/578 (81%), Gaps = 21/578 (3%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNGYVSLSPNL 61
N L N+ FK+SA + +S F+LGK WS DG +R++FFS+ S ++ V+LSP+
Sbjct: 8 NLLRNSIFFKISAFVLISVACFFLGKHWSEDGFRRLIFFSAEPS-----RSPIVALSPDF 62
Query: 62 NKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIGE 121
K+++IS LI ++ + P + P P P + FGIVNE+GTMSD+F+IG+
Sbjct: 63 GKTYNISGLIYESHPILPPSLSPPPPP--------DSVELKVFGIVNENGTMSDEFQIGD 114
Query: 122 YDPDLVET-------EWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
YD + ET E + D + T + ++E+C +M EYIPCLDNVEAIK+L S
Sbjct: 115 YDVESAETLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDNVEAIKRLNS 174
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T +GERFER+CP +G GLNC VP P+GY++PIPWPRSR+EVW+NNVPH++LVEDKGGQNW
Sbjct: 175 TARGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNW 234
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
I KE DKFKFPGGGTQFIHGADQYLDQI++M+PDI++G+H RVV+D GCGVASFGAYL+
Sbjct: 235 IYKENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDL+HCSRCRINWTRD
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+LTTRLCW LVKKEGYIAIW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NN+CYL+R AG PPLC+ +D+PDNVWYVDLKACITR+ ENGYGAN++ WP RL T
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANLAPWPARLLT 474
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK++ LRNVLDMRAGFGGFAA
Sbjct: 475 PPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIGLRNVLDMRAGFGGFAA 534
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
AL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDW
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDW 572
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/569 (63%), Positives = 435/569 (76%), Gaps = 26/569 (4%)
Query: 10 LFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPNLNKSFDISS 69
L KL A F+S + +L +SD FS Y SL ++ S +++
Sbjct: 16 LVKLIAFAFLSISTIFLFNHFSDS------FS------------YPSLPFPISSSSNVTE 57
Query: 70 LISQN-QSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIGEYDPDLVE 128
I N S+A+ P P P + PPP PP R GI+NE+G MSD FEIG +DPD ++
Sbjct: 58 AIQTNITSVAAVAPSPPPRPRLKISPPPLPPTVVRTGIINENGAMSDSFEIGGFDPDSID 117
Query: 129 TEWNGDRNGTEATKS-----FKITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGERFER 183
+ N + K F+I + ++C + +YIPCLDN E IK+L +TD+GE +ER
Sbjct: 118 ELKSATGNSSVEEKESPEVGFQIEKLKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENYER 177
Query: 184 HCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFK 243
HCP L+CL+P P GYK PI WP+SR+++W+NNVPH+RLVEDKGGQNWI +EKDKF
Sbjct: 178 HCP--KQSLDCLIPPPDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFV 235
Query: 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIA 303
FPGGGTQFIHGADQYLDQI++M+PDIT+G RV +D GCGVASFGA+L+ RN T+S+A
Sbjct: 236 FPGGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVA 295
Query: 304 PKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVN 363
PKDVHENQIQFALERG PAMVA FATRRL YPSQ+F++IHCSRCRINWTRDDGILLLEVN
Sbjct: 296 PKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVN 355
Query: 364 RMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCY 423
RMLRAGGYF WAAQPVYKHE+ +E WKEMLDLT R+CWEL+KKEGYIA+W+KP NNSCY
Sbjct: 356 RMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCY 415
Query: 424 LNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQ 483
++REAGT PPLC PDD+PD+VWYVD+K CITRLP+NGYGANVS WP RL P+RLQSIQ
Sbjct: 416 VSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGYGANVSTWPARLHDPPERLQSIQ 475
Query: 484 LDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDC 543
+DA+I+RKE+ KAES++W E++ESYVR WK+ KLRNVLDMRAGFGGFAAAL + DC
Sbjct: 476 MDAYISRKEIMKAESRFWLEVVESYVRVFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDC 535
Query: 544 WVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
WVMN+VPVSGFNTLPVIYDRGL G MHDW
Sbjct: 536 WVMNIVPVSGFNTLPVIYDRGLQGAMHDW 564
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/501 (45%), Positives = 302/501 (60%), Gaps = 50/501 (9%)
Query: 84 PSPAPVDPLPPPPPPPPPERFGIVNEDGT-----MSDDFEIGEYDPDLVETEWNGDRNGT 138
PS + D P P P P R V+ D T ++ E+GE
Sbjct: 35 PSLSTTDYYTPIPKSPIPHRIVDVSSDQTPQKMKLNTSLEVGEL---------------- 78
Query: 139 EATKSFKITRYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVP 197
++++C G+ +YIPCLDN AIKQLKS E ERHCP CL+P
Sbjct: 79 ---------KWDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCP--EPSPKCLLP 127
Query: 198 APKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQ 257
P YK P+PWP+SR+ +WY+NVPH +LVE K QNW+ KE + FPGGGTQF G
Sbjct: 128 LPDNYKPPVPWPKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTH 187
Query: 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317
Y++ I K +P I WG +IRVV+D GCGVASFG LL ++VITMS APKD HE QIQFALE
Sbjct: 188 YVEFIEKALPSIKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALE 247
Query: 318 RGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377
RG PA ++ T++L +PS AFDLIHC+RCR++W D G LLE+NR+LR GG+F W+A
Sbjct: 248 RGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSAT 307
Query: 378 PVYKHEEAQEEHWKEMLDLTTRLCWELVKK----EGY-IAIWKKPTNNSCYLNREAGTIP 432
PVY+ + W EM+ LT +CW++V K G + I++KPT+ SCY N+ + P
Sbjct: 308 PVYRDNDRDSRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCY-NKRSTQDP 366
Query: 433 PLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKE 492
PLCD + + WYV L C+++LP NV WPE P RL S++ + + E
Sbjct: 367 PLCDKKE-ANGSWYVPLAKCLSKLP----SGNVQSWPELW---PKRLVSVKPQSISVKAE 418
Query: 493 LFKAESKYWN-EIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551
K +++ W+ + + Y++ L +RNV+DM AGFGGFAAALI WVMNVVPV
Sbjct: 419 TLKKDTEKWSASVSDVYLKHLAVNWSTVRNVMDMNAGFGGFAAALIN--LPLWVMNVVPV 476
Query: 552 SGFNTLPVIYDRGLIGVMHDW 572
+TL V+YDRGLIGV HDW
Sbjct: 477 DKPDTLSVVYDRGLIGVYHDW 497
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/426 (49%), Positives = 276/426 (64%), Gaps = 16/426 (3%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDNV+AI+ L ST E ERHCP + CLVP P GYK PI WP+SR ++WY
Sbjct: 308 DYIPCLDNVQAIRSLPSTKHYEHRERHCP--DSPPTCLVPLPDGYKRPIEWPKSREKIWY 365
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NVPH++L E KG QNW+ + FPGGGTQF HGA Y+D I + VP I WG RV
Sbjct: 366 TNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPAIAWGKRSRV 425
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
V+D GCGVASFG +L R+VITMS+APKD HE Q+QFALERG PA+ A T RLP+P +
Sbjct: 426 VLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTTRLPFPGR 485
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FD++HC+RCR+ W + G LLLE+NR+LR GG+F W+A PVY+ + E WK M +L
Sbjct: 486 VFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIWKAMSELI 545
Query: 398 TRLCWELVKKEG------YIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKA 451
++CWELV +A ++KPT+N CY NR + +PP+C D+P+ W V L+A
Sbjct: 546 KKMCWELVSINKDTINGVGVATYRKPTSNECYKNR-SEPVPPICADSDDPNASWKVPLQA 604
Query: 452 CITRLPENGYGANVS---LWPERLRTSPDRLQSIQLDAF-IARKELFKAESKYWNEII-E 506
C+ PE+ WP RL +P L S Q + A E F A+ ++W ++ +
Sbjct: 605 CMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTK 664
Query: 507 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLI 566
SY+ L +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TL +IY+RGL
Sbjct: 665 SYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKV--WVMNVVPIDSPDTLAIIYERGLF 722
Query: 567 GVMHDW 572
G+ HDW
Sbjct: 723 GIYHDW 728
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/426 (49%), Positives = 278/426 (65%), Gaps = 16/426 (3%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN EAI +L+S E ERHCP + CLVP P+GYK I WP SR+++WY
Sbjct: 381 DYIPCLDNEEAIMKLRSRRHFEHRERHCPEDPP--TCLVPLPEGYKEAIKWPESRDKIWY 438
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH++L E KG QNW+ + FPGGGTQFIHGA Y+D + + + +I WG RV
Sbjct: 439 HNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRV 498
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
++D GCGVASFG +L R+VI MS+APKD HE Q+QFALER PA+ A ++RLP+PS+
Sbjct: 499 ILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSR 558
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FDLIHC+RCR+ W + G+LLLE+NRMLR GGYF W+A PVY+ E + WKEM LT
Sbjct: 559 VFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALT 618
Query: 398 TRLCWELV-----KKEGY-IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKA 451
LCWELV K G AI++KP N CY R+ PPLC +D+ + WYV L+A
Sbjct: 619 KSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNK-PPLCKNNDDANAAWYVPLQA 677
Query: 452 CITRLPEN--GYGANVSL-WPERLRTSPDRLQSIQLDAFIA-RKELFKAESKYWNEIIES 507
C+ ++P N G+ + WP RL+T P L S Q+ + F + ++W ++
Sbjct: 678 CMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKHVVSK 737
Query: 508 -YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLI 566
Y+ + +RNV+DMRA +GGFAAAL + WVMNVV ++ +TLP+IY+RGL
Sbjct: 738 VYMNEIGISWSNVRNVMDMRAVYGGFAAAL--KDLQVWVMNVVNINSPDTLPIIYERGLF 795
Query: 567 GVMHDW 572
G+ HDW
Sbjct: 796 GIYHDW 801
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/423 (49%), Positives = 278/423 (65%), Gaps = 20/423 (4%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN +AIK+LKS E ERHCP CLVP P+ YK P+PWP+SR+ +WY
Sbjct: 114 DYIPCLDNTKAIKKLKSKRNMEHRERHCPERSP--KCLVPLPQHYKVPLPWPQSRDMIWY 171
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH +LVE K QNW+ K F FPGGGTQF G Y++ I K +P + WG +RV
Sbjct: 172 DNVPHPKLVEYKKDQNWVRKSGPFFVFPGGGTQFKDGVIHYINFIQKTLPILDWGKKVRV 231
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
V+D GCGVASFG LL +NVITMS APKD HE QIQFALERG PA +A T++LP+P
Sbjct: 232 VLDVGCGVASFGGTLLDKNVITMSFAPKDEHEAQIQFALERGIPATLAVIGTQKLPFPDN 291
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
A+D+IHC+RCR++W G LLE+NR+LR GG+F W+A PVY+H+E WK M LT
Sbjct: 292 AYDVIHCARCRVHWHGYGGRPLLELNRVLRPGGFFVWSATPVYQHDEGHRNVWKTMESLT 351
Query: 398 TRLCWELVKKEGY----IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDN-VWYVDLKAC 452
T +CW++V + + I++KP ++SCY +R+ PPLC ++ N WY L C
Sbjct: 352 TSMCWKVVARTRFTKVGFVIYQKPDSDSCYESRKNKD-PPLCIEEETKKNSSWYTPLLTC 410
Query: 453 ITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIES---YV 509
+ +LP + G S WPERL +P L Q +E F+ +SK W+ ++ + Y
Sbjct: 411 LPKLPVSPIGKWPSGWPERLTETPVSLFREQ-----RSEESFREDSKLWSGVMSNIYLYS 465
Query: 510 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 569
A++W ++ NV+DM AG+GGFAAALI + WVMNV+PV G +TL I+DRGLIG+
Sbjct: 466 LAINW--TRIHNVMDMNAGYGGFAAALINKPL--WVMNVIPVEGEDTLSTIFDRGLIGIY 521
Query: 570 HDW 572
HDW
Sbjct: 522 HDW 524
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/425 (48%), Positives = 273/425 (64%), Gaps = 15/425 (3%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN +AIK+L +T E ERHCP +CLV P GYK I WP+SR ++WY
Sbjct: 250 DYIPCLDNWQAIKKLHTTMHYEHRERHCPEESP--HCLVSLPDGYKRSIKWPKSREKIWY 307
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NNVPH++L E KG QNW+ + FPGGGTQF +GA Y+D I + P I WG+ RV
Sbjct: 308 NNVPHTKLAEIKGHQNWVKMSGEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRV 367
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
++D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM+ T+RLP+P
Sbjct: 368 ILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGS 427
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E WK M +LT
Sbjct: 428 VFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELT 487
Query: 398 TRLCWELVK------KEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKA 451
+CW+LV E AI++KPT+N CY N+ PPLC D+ + W V L+A
Sbjct: 488 KAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCY-NKRPQNEPPLCKDSDDQNAAWNVPLEA 546
Query: 452 CITRLPENGYGANV---SLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ES 507
C+ ++ E+ ++WPER+ T+P+ L S + E F A+ + W I+ ++
Sbjct: 547 CMHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKA 606
Query: 508 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIG 567
Y+ + +RNV+DMRA +GGFAAAL + K WVMNVVPV +TLP+IY+RGL G
Sbjct: 607 YLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPVDAPDTLPIIYERGLFG 664
Query: 568 VMHDW 572
+ HDW
Sbjct: 665 IYHDW 669
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/441 (46%), Positives = 281/441 (63%), Gaps = 20/441 (4%)
Query: 144 FKITRYEMCPGSMREYIPCLDNVEAIKQLK---STDKGERFERHCPLNGTGLNCLVPAPK 200
F + +C E IPCLD I Q++ E +ERHCP NCL+P P
Sbjct: 71 FTPRSFPVCDDRHSELIPCLDR-NLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPN 129
Query: 201 GYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLD 260
GYK PI WP+SR+EVW N+PH+ L +K QNW+ + DK FPGGGT F +GAD+Y+
Sbjct: 130 GYKVPIKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIA 189
Query: 261 QIAKMV--PD--ITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFAL 316
+A M+ P+ + G +R V D GCGVASFG YLL +++TMS+AP DVH+NQIQFAL
Sbjct: 190 SMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFAL 249
Query: 317 ERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376
ERG PA + T+RLPYPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++
Sbjct: 250 ERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSS 309
Query: 377 QPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCD 436
Y +E W+EM L R+CW++ K IW+KP N CYL RE GT PPLC
Sbjct: 310 PEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCR 369
Query: 437 PDDNPDNVWYVDLKACITRLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKEL 493
D++PD VW V+++ACIT ++ + G+ ++ WP RL + P RL F +
Sbjct: 370 SDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTGM 424
Query: 494 FKAESKYWNEIIESYVRAL--HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551
F+ +++ W + +++Y L + +RN++DM+A G FAAAL E+ D WVMNVVP
Sbjct: 425 FEKDTELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPE 482
Query: 552 SGFNTLPVIYDRGLIGVMHDW 572
G NTL +IYDRGL+G +H W
Sbjct: 483 DGPNTLKLIYDRGLMGAVHSW 503
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/484 (44%), Positives = 291/484 (60%), Gaps = 26/484 (5%)
Query: 99 PPPERFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMRE 158
P ++ I E T S G + LVE++ ++ ++ +K+ P +
Sbjct: 202 PAGDQAEITKESSTGS-----GAWSTQLVESQ--NEKKAQVSSIKWKVCNVTAGP----D 250
Query: 159 YIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYN 218
YIPCLDN +AI++L ST E ERHCP CLV P+GYK I WP+SR ++WY
Sbjct: 251 YIPCLDNWQAIRKLHSTKHYEHRERHCPEESP--RCLVSLPEGYKRSIKWPKSREKIWYT 308
Query: 219 NVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVV 278
N+PH++L E KG QNW+ + FPGGGTQF +GA Y+D + + PDI WG+ RV+
Sbjct: 309 NIPHTKLAEVKGHQNWVKMSGEYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVI 368
Query: 279 MDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQA 338
+D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM T+RLP+P
Sbjct: 369 LDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSV 428
Query: 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTT 398
FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E WK M LT
Sbjct: 429 FDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTK 488
Query: 399 RLCWEL--VKK----EGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKAC 452
+CWEL +KK E AI++KP +N CY N + PPLC D+ + W V L+AC
Sbjct: 489 AMCWELMTIKKDELNEVGAAIYQKPMSNKCY-NERSQNEPPLCKDSDDQNAAWNVPLEAC 547
Query: 453 ITRLPENGYGANV---SLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ESY 508
I ++ E+ WPER+ T P L S + +E F A+ + W I+ +SY
Sbjct: 548 IHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSY 607
Query: 509 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGV 568
+ + +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TLP+IY+RGL G+
Sbjct: 608 LNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPIDSPDTLPIIYERGLFGI 665
Query: 569 MHDW 572
HDW
Sbjct: 666 YHDW 669
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 572 | ||||||
| 255566464 | 673 | ATP binding protein, putative [Ricinus c | 0.984 | 0.836 | 0.717 | 0.0 | |
| 224101039 | 664 | predicted protein [Populus trichocarpa] | 0.977 | 0.841 | 0.723 | 0.0 | |
| 449465844 | 678 | PREDICTED: probable methyltransferase PM | 0.987 | 0.833 | 0.695 | 0.0 | |
| 224109464 | 669 | predicted protein [Populus trichocarpa] | 0.979 | 0.837 | 0.721 | 0.0 | |
| 356569344 | 663 | PREDICTED: probable methyltransferase PM | 0.979 | 0.844 | 0.692 | 0.0 | |
| 297827583 | 689 | dehydration-responsive family protein [A | 0.979 | 0.812 | 0.681 | 0.0 | |
| 18405149 | 694 | putative methyltransferase PMT11 [Arabid | 0.982 | 0.809 | 0.665 | 0.0 | |
| 357492367 | 653 | hypothetical protein MTR_5g080720 [Medic | 0.958 | 0.839 | 0.665 | 0.0 | |
| 15239326 | 682 | putative methyltransferase PMT12 [Arabid | 0.973 | 0.816 | 0.679 | 0.0 | |
| 225449394 | 686 | PREDICTED: probable methyltransferase PM | 0.991 | 0.826 | 0.696 | 0.0 |
| >gi|255566464|ref|XP_002524217.1| ATP binding protein, putative [Ricinus communis] gi|223536494|gb|EEF38141.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/588 (71%), Positives = 485/588 (82%), Gaps = 25/588 (4%)
Query: 1 MKNPLSNTDLFK------LSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNG 53
MK+ +N DL K ++A +S TFFYLGK WS +G Q+++FFS+ T S
Sbjct: 1 MKSLNTNMDLLKTPLVLKITAFCLLSITFFYLGKHWSSNGYQQLIFFSTPTES------- 53
Query: 54 YVSLSPNLNKSFDISSLISQNQSLASP-----YIVPSPAPVDPLPPPPPPPPPERFGIVN 108
VS+SPNLNK F+I+ LI+QNQS P + P+PAP+D FG+++
Sbjct: 54 -VSISPNLNKPFNITDLIAQNQSQIVPDKTQNVVSPTPAPIDQNSVGSDSDSNRTFGVID 112
Query: 109 EDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKS---FK-ITRYEMCPGSMREYIPCLD 164
DG M+DDFE+GE+DP++VE+ W + E+ S FK I R+++CP SMRE IPCLD
Sbjct: 113 SDGKMTDDFEVGEFDPEIVES-WGNESGVVESGDSDVKFKGIKRFDLCPESMRERIPCLD 171
Query: 165 NVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSR 224
NVEAIK+LKST++GE+FERHCP G GLNCLVP PKGYK PIPWPRSR+EVW++NVPHSR
Sbjct: 172 NVEAIKELKSTERGEKFERHCPQEGKGLNCLVPPPKGYKQPIPWPRSRDEVWFSNVPHSR 231
Query: 225 LVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCG 284
LVEDKGGQNWI KEK+KFKFPGGGTQFIHGADQYL+QI+KMVP+I +G H RVV+D GCG
Sbjct: 232 LVEDKGGQNWIYKEKNKFKFPGGGTQFIHGADQYLNQISKMVPEIAFGSHTRVVLDVGCG 291
Query: 285 VASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 344
VASFGAYLL RNV+TMS+APKDVHENQIQFALERG PAMV AFAT RL YPSQAF++IHC
Sbjct: 292 VASFGAYLLSRNVLTMSVAPKDVHENQIQFALERGVPAMVVAFATHRLLYPSQAFEIIHC 351
Query: 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWEL 404
SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE EE W+EML+LTTRLCW L
Sbjct: 352 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEAILEEQWEEMLNLTTRLCWTL 411
Query: 405 VKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGAN 464
VKKEGYIAIW+KP NNSCYL+RE GT PPLCDPDDNPDNVWYVDLKACITRLPE+GYGAN
Sbjct: 412 VKKEGYIAIWQKPINNSCYLSREEGTKPPLCDPDDNPDNVWYVDLKACITRLPEDGYGAN 471
Query: 465 VSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLD 524
++ WP RL T PDRLQSIQLDA+I+RKELFKAESKYW EII YVRA HWKK KLRNVLD
Sbjct: 472 ITTWPARLHTPPDRLQSIQLDAYISRKELFKAESKYWYEIIAGYVRAWHWKKFKLRNVLD 531
Query: 525 MRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
M+AGFGGFAAALI+Q+FDCWV+NVVP+SG NTLPVIYDRGL+GVMHDW
Sbjct: 532 MKAGFGGFAAALIDQQFDCWVLNVVPISGPNTLPVIYDRGLLGVMHDW 579
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101039|ref|XP_002312116.1| predicted protein [Populus trichocarpa] gi|222851936|gb|EEE89483.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/578 (72%), Positives = 478/578 (82%), Gaps = 19/578 (3%)
Query: 4 PLSNTDL------FKLSALLFVSFTFFYLGKRWSDGN-QRILFFSSYTSSRTSQQNGYVS 56
PL+NTDL K++A +S TFFYLGK WS+G Q++LFFS+ +S +S
Sbjct: 3 PLTNTDLIKTPLILKITAFTLISITFFYLGKHWSNGGYQQLLFFSTPQNS--------IS 54
Query: 57 LSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPER-FGIVNEDGTMSD 115
+SPN ++SF+I+ L+S NQS + + P P P P P R FGI++ DG MSD
Sbjct: 55 ISPNNDRSFNITPLVSLNQSEQP--LTDQATTISPPPDESPLPDPNRTFGIIDSDGKMSD 112
Query: 116 DFEIGEYDPDLVETEWNGDRNGTEATKS-FKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
DFE GE+DPD+VE NG + + S F+ RYE+CP SMREYIPCLDNV+A+K+LKS
Sbjct: 113 DFEAGEFDPDIVENWGNGSEIESGSKDSRFRAERYELCPVSMREYIPCLDNVKALKRLKS 172
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T+KGERFERHCP G LNCLVP PKGY+ PIPWPRSR+EVWY+NVPHSRLVEDKGGQNW
Sbjct: 173 TEKGERFERHCPEKGDELNCLVPPPKGYRPPIPWPRSRDEVWYSNVPHSRLVEDKGGQNW 232
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
ISK KDKF FPGGGTQFIHGAD+YLDQI++MVPDI +G H RVV+D GCGVASFGAYLL
Sbjct: 233 ISKAKDKFTFPGGGTQFIHGADKYLDQISEMVPDIAFGRHTRVVLDVGCGVASFGAYLLS 292
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
R+V+TMSIAPKDVHENQIQFALERG PAMVAAFAT RLPYPSQAF+LIHCSRCRINWTRD
Sbjct: 293 RDVMTMSIAPKDVHENQIQFALERGVPAMVAAFATHRLPYPSQAFELIHCSRCRINWTRD 352
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYFAWAAQPVYKHE+ EE W+EML+LTTRLCWELVKKEGYIAIW
Sbjct: 353 DGILLLEVNRMLRAGGYFAWAAQPVYKHEQVLEEQWEEMLNLTTRLCWELVKKEGYIAIW 412
Query: 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NNSCYL+R+ G P LCD DD+PDNVWYVDLKACI+RLPENGYGANVS+WP RL T
Sbjct: 413 QKPLNNSCYLSRDTGAKPHLCDSDDDPDNVWYVDLKACISRLPENGYGANVSMWPSRLHT 472
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQSIQ ++FIARKEL KAE+K+W+E I YVRA HWKK KLRNV+DM+AGFGGFAA
Sbjct: 473 PPDRLQSIQYESFIARKELLKAENKFWSETIAGYVRAWHWKKFKLRNVMDMKAGFGGFAA 532
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
ALIEQ FDCWV+NVVPVSG NTLPV+YDRGL+GVMHDW
Sbjct: 533 ALIEQGFDCWVLNVVPVSGSNTLPVLYDRGLLGVMHDW 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465844|ref|XP_004150637.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] gi|449516433|ref|XP_004165251.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/582 (69%), Positives = 477/582 (81%), Gaps = 17/582 (2%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPNLN 62
+ L + +FK+SAL+ +S TFFYLGK WSDG +++FF+ T VS+SPN +
Sbjct: 8 DSLKSPSIFKISALILISLTFFYLGKHWSDGYPQLIFFTE-----TRYPPPSVSISPNHD 62
Query: 63 KSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPP----------ERFGIVNEDGT 112
F++SSLI N + +P S A P P PP +RFGIV+E+GT
Sbjct: 63 TLFNVSSLIELNLTREAPEKPLSSASAPLPSPILPSSPPPPTPPPSDSVQRFGIVDENGT 122
Query: 113 MSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKI--TRYEMCPGSMREYIPCLDNVEAIK 170
M+D+FE+G+ DP+L E N +GT+ + S KI ++ +CP SMREYIPCLDNV+AIK
Sbjct: 123 MADEFEVGDLDPELTENWGNETESGTDESGSAKIRIKKFALCPKSMREYIPCLDNVDAIK 182
Query: 171 QLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKG 230
QLKST+KGE+FERHCP +G GL+CLVPAPKGYK PIPWPRSR+EVW+NNVPH+RLV+DKG
Sbjct: 183 QLKSTEKGEKFERHCPDSGGGLSCLVPAPKGYKMPIPWPRSRDEVWFNNVPHTRLVDDKG 242
Query: 231 GQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA 290
GQNWIS++KDKFKFPGGGTQFIHGA++YLD I+K+VPD+ +G H RVV+D GCGVASFGA
Sbjct: 243 GQNWISRDKDKFKFPGGGTQFIHGANEYLDHISKIVPDVAFGSHTRVVLDIGCGVASFGA 302
Query: 291 YLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350
YLL RNV+TMSIAPKDVHENQIQFALERG PAMVAAF+TRRL YPSQAFDLIHCSRCRIN
Sbjct: 303 YLLSRNVVTMSIAPKDVHENQIQFALERGVPAMVAAFSTRRLLYPSQAFDLIHCSRCRIN 362
Query: 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
WTRDDG+LLLEV+RMLRAGGYFAWAAQPVYKHEEA E+ W+EM++LTTRLCW+ VKK+GY
Sbjct: 363 WTRDDGVLLLEVDRMLRAGGYFAWAAQPVYKHEEALEQQWEEMINLTTRLCWKFVKKDGY 422
Query: 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPE 470
IAIW+KP NNSCYL R+A PPLCD DD+PD VWYV LK CITRLPENG+G NV+ WP
Sbjct: 423 IAIWQKPMNNSCYLTRDAEVKPPLCDIDDDPDKVWYVKLKPCITRLPENGFGRNVTKWPA 482
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFG 530
RL+T PDRLQSIQ DA+I+R ELF AESKYWNEII SYVRALHWKK++LRNV+DMRAGFG
Sbjct: 483 RLQTPPDRLQSIQYDAYISRNELFTAESKYWNEIIGSYVRALHWKKIRLRNVMDMRAGFG 542
Query: 531 GFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
GFAAALI+ K D WVMNVVPVSG NTLPVIYDRGL+GV+HDW
Sbjct: 543 GFAAALIDHKLDSWVMNVVPVSGPNTLPVIYDRGLLGVLHDW 584
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109464|ref|XP_002315205.1| predicted protein [Populus trichocarpa] gi|222864245|gb|EEF01376.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/582 (72%), Positives = 482/582 (82%), Gaps = 22/582 (3%)
Query: 4 PLSNTD------LFKLSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYVS 56
PL NTD + K++A +S TFFYLGK WS+ G Q++LFFS+ +S +S
Sbjct: 3 PLINTDFIKTPQILKITAFALISITFFYLGKHWSNSGYQQLLFFSTPQNS--------IS 54
Query: 57 LSPNLNKSFDISSLISQNQSLASPY---IVPSPAPVDPLPPPPPPPPPER-FGIVNEDGT 112
+SPN +KSF+I+SLI NQS P I P+P + P P P P R FGI++ DG
Sbjct: 55 ISPNNDKSFNITSLIPPNQSDHPPTEQAINPTPPSIYPPPDESPLSDPNRTFGIIDSDGK 114
Query: 113 MSDDFEIGEYDPDLVETEWNGDRNGTEATKSFKIT--RYEMCPGSMREYIPCLDNVEAIK 170
M+DDFE+GE+DPD+ E W + A+ +FK+ +YE+CPGSMREYIPCLDNVEAIK
Sbjct: 115 MTDDFEVGEFDPDIAEN-WGNETEIESASTNFKVRVRKYELCPGSMREYIPCLDNVEAIK 173
Query: 171 QLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKG 230
+LK T+KGERFERHCP G GLNCLVP PKGY+ PIPWPRSR+EVWY+NVPH+RL +DKG
Sbjct: 174 RLKLTEKGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPRSRDEVWYSNVPHTRLADDKG 233
Query: 231 GQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGA 290
GQNWISKEK+KFKFPGGGTQFIHGAD+YLDQIA+MVPDIT+GHH R+++D GCGVASFGA
Sbjct: 234 GQNWISKEKEKFKFPGGGTQFIHGADKYLDQIAQMVPDITFGHHTRMILDVGCGVASFGA 293
Query: 291 YLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350
YLL RNV+TMSIAPKDVHENQIQFALERG PAMVAAFAT RL YPSQAF+LIHCSRCRIN
Sbjct: 294 YLLSRNVMTMSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFELIHCSRCRIN 353
Query: 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE EE W EML+LTT LCWELVKKEGY
Sbjct: 354 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEHVLEEQWAEMLNLTTHLCWELVKKEGY 413
Query: 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPE 470
IAIWKKP NN+CYL+R+ G IPPLCDPDD+PDNVWYVDLKACI+RLPENGYGANV WP
Sbjct: 414 IAIWKKPLNNNCYLSRDTGAIPPLCDPDDDPDNVWYVDLKACISRLPENGYGANVPTWPS 473
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFG 530
RL T PDRLQSIQ +++IARKEL KAE+K+W+E I YVRA HWKK KLRNV+DM+AGFG
Sbjct: 474 RLHTPPDRLQSIQYESYIARKELLKAENKFWSETIAGYVRAWHWKKFKLRNVMDMKAGFG 533
Query: 531 GFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
GFAAALI+Q FDCWV+NVVPVSG NTLPV+YDRGL+GVMHDW
Sbjct: 534 GFAAALIDQGFDCWVLNVVPVSGSNTLPVLYDRGLLGVMHDW 575
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569344|ref|XP_003552862.1| PREDICTED: probable methyltransferase PMT11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/576 (69%), Positives = 470/576 (81%), Gaps = 16/576 (2%)
Query: 1 MKNPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPN 60
++ PL+ K++A F++ TFFY GK WSDG Q+++FF+ S S N +VS SPN
Sbjct: 6 LRTPLT----LKIAAFFFIAVTFFYFGKHWSDGYQQLVFFTQ-RSDPDSNSNPFVSTSPN 60
Query: 61 LNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIG 120
KSF++S+LI N A P P P + E+ G+VNE+GTMSD+FE+G
Sbjct: 61 NAKSFNVSALIENNTQPAPPENAPPPPAPEE-------GSIEKLGVVNENGTMSDEFEVG 113
Query: 121 EYDPDLVETEWN----GDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKSTD 176
++DP +V+ N + G+ + F I ++ +CP M EYIPCLDN + I++L ST+
Sbjct: 114 DFDPGMVDQWVNETQVDESEGSSSDVGFGIKKFGLCPREMSEYIPCLDNEDEIRKLPSTE 173
Query: 177 KGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWIS 236
KGERFERHCP G GLNCLVPAP GY+TPIPWPRSR+EVWYNNVPH+RLVEDKGGQNWIS
Sbjct: 174 KGERFERHCPEQGRGLNCLVPAPNGYRTPIPWPRSRDEVWYNNVPHTRLVEDKGGQNWIS 233
Query: 237 KEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRN 296
++KDKFKFPGGGTQFIHGA++YLD I+KM+PDIT+G HIRVV+D GCGVASFGAYLL RN
Sbjct: 234 RDKDKFKFPGGGTQFIHGANEYLDHISKMIPDITFGKHIRVVLDVGCGVASFGAYLLSRN 293
Query: 297 VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG 356
V+TMS+APKDVHENQIQFALERG PAM AAFATRRL YPSQAFDL+HCSRCRINWTRDDG
Sbjct: 294 VVTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLVHCSRCRINWTRDDG 353
Query: 357 ILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKK 416
ILLLEVNRMLRAGGYF WAAQPVYKHEE EE W+EML+LTTRLCW +KK+GYIA+W+K
Sbjct: 354 ILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWEEMLNLTTRLCWNFLKKDGYIAVWQK 413
Query: 417 PTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSP 476
P++NSCY +REAGT PP+CDP D+PDNVWYVDLKACI+ LP+NGYGANV+ WP RL+T P
Sbjct: 414 PSDNSCYRDREAGTKPPMCDPSDDPDNVWYVDLKACISELPKNGYGANVTEWPARLQTPP 473
Query: 477 DRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAAL 536
DRLQSI+LDAF +R ELF+AESKYWNEII SYVR LHWK+++LRNV+DMRAGFGGFAAAL
Sbjct: 474 DRLQSIKLDAFTSRSELFRAESKYWNEIIASYVRVLHWKEIRLRNVMDMRAGFGGFAAAL 533
Query: 537 IEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
I Q D WVMNVVPVSG NTLPVIYDRGLIGVMHDW
Sbjct: 534 INQNLDSWVMNVVPVSGPNTLPVIYDRGLIGVMHDW 569
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827583|ref|XP_002881674.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297327513|gb|EFH57933.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/602 (68%), Positives = 476/602 (79%), Gaps = 42/602 (6%)
Query: 4 PLSNTDLFK------LSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYVS 56
PL N DL K +SAL+FV+ FFYLGK WSD G Q+++FFSS TS + + VS
Sbjct: 3 PLPNGDLLKSPTLIKISALVFVTVAFFYLGKHWSDDGYQQLVFFSSSTSRSSIPE---VS 59
Query: 57 LSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPP--------------------P 96
+SPN N+ F++S++I N + + PA + PP P
Sbjct: 60 VSPNSNRVFNLSAIIPTNHTE-----IEIPATIQQQPPSVVKVEANPPPPPPSPPPPSPP 114
Query: 97 PPPPPERFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKS------FKITRYE 150
PP P + FGIV+E+G MSDDFE+GE + D VE +W EA + +I ++
Sbjct: 115 PPGPVKSFGIVDENGVMSDDFEVGEVESDTVE-DWGNQTEIVEAKRDGDSKARVRIKKFG 173
Query: 151 MCPGSMREYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPR 210
MCP SMREYIPCLDN +AIK+LKST++GERFERHCP G GLNCLVP PKGY+ PIPWP+
Sbjct: 174 MCPESMREYIPCLDNTDAIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPK 233
Query: 211 SRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDIT 270
SR+EVW++NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KMV DIT
Sbjct: 234 SRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDIT 293
Query: 271 WGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330
+G HIRV MD GCGVASFGAYLL R+V+T+S+APKDVHENQIQFALERG PAM AAFATR
Sbjct: 294 FGKHIRVAMDVGCGVASFGAYLLSRDVLTLSVAPKDVHENQIQFALERGVPAMAAAFATR 353
Query: 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390
RL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE W
Sbjct: 354 RLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQW 413
Query: 391 KEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLK 450
EML+LTT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD ++PDNVWY +LK
Sbjct: 414 TEMLNLTTSLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESEDPDNVWYTNLK 473
Query: 451 ACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVR 510
CI+R+PENGYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YVR
Sbjct: 474 PCISRIPENGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVR 533
Query: 511 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH 570
AL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVMH
Sbjct: 534 ALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMH 593
Query: 571 DW 572
DW
Sbjct: 594 DW 595
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18405149|ref|NP_030521.1| putative methyltransferase PMT11 [Arabidopsis thaliana] gi|75097411|sp|O22285.1|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gi|2642157|gb|AAB87124.1| expressed protein [Arabidopsis thaliana] gi|15450749|gb|AAK96646.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gi|21700885|gb|AAM70566.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gi|330254624|gb|AEC09718.1| putative methyltransferase PMT11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/607 (66%), Positives = 471/607 (77%), Gaps = 45/607 (7%)
Query: 3 NPLSNTDLFK------LSALLFVSFTFFYLGKRWSD-GNQRILFFSSYTSSRTSQQNGYV 55
PL+N DLFK +SAL+FV+ FFYLGK WSD G Q+++FFSS TS + + V
Sbjct: 2 KPLTNGDLFKSPTLIKISALVFVTVAFFYLGKHWSDDGYQQLVFFSSSTSGSSIPE---V 58
Query: 56 SLSPNLNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPE------------- 102
S+SPN N+ F++S++I N + + PA + PP +
Sbjct: 59 SVSPNSNRVFNLSAIIPTNHTQ-----IEIPATIRQQPPSVVADTEKVKVEANPPPPPPP 113
Query: 103 ------------RFGIVNEDGTMSDDFEIGEYDPDLVE-----TEWNGDRNGTEATKSFK 145
FGIV+ +G MSDDFE+GE + D VE TE ++ ++ +
Sbjct: 114 SPSPPPPPGPVKSFGIVDANGVMSDDFEVGEVESDTVEDWGNQTEIVEAKSDGDSKARVR 173
Query: 146 ITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTP 205
I ++ MCP SMREYIPCLDN + IK+LKST++GERFERHCP G GLNCLVP PKGY+ P
Sbjct: 174 IKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQP 233
Query: 206 IPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKM 265
IPWP+SR+EVW++NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KM
Sbjct: 234 IPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKM 293
Query: 266 VPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA 325
V DIT+G HIRV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM A
Sbjct: 294 VSDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAA 353
Query: 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385
AFATRRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A
Sbjct: 354 AFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPA 413
Query: 386 QEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVW 445
EE W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD D+PDNVW
Sbjct: 414 LEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVW 473
Query: 446 YVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII 505
Y +LK CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII
Sbjct: 474 YTNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEII 533
Query: 506 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL 565
YVRAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL
Sbjct: 534 GGYVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 566 IGVMHDW 572
+GVMHDW
Sbjct: 594 LGVMHDW 600
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357492367|ref|XP_003616472.1| hypothetical protein MTR_5g080720 [Medicago truncatula] gi|355517807|gb|AES99430.1| hypothetical protein MTR_5g080720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/583 (66%), Positives = 466/583 (79%), Gaps = 35/583 (6%)
Query: 1 MKNPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNGYVSLSPN 60
MK S K +AL V+ TFFYLGK WS+ +Q+ L F +T++ T+ Q +S+SPN
Sbjct: 1 MKPSTSADPFIKTAALFTVAVTFFYLGKHWSNRSQQQLIF--FTTTTTTDQ---ISISPN 55
Query: 61 LNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIG 120
NK F+IS++I+ NQ+ P ++ G++NEDGTMSD+FE+G
Sbjct: 56 FNKFFNISAIINPNQT-------------------PETVKIKKSGVLNEDGTMSDEFEVG 96
Query: 121 EYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGER 180
E+DPD V+ + ++ + K+ ++E+C GSM EYIPCLDNV+ I++L+S ++GER
Sbjct: 97 EFDPDFVDEAQSDVKDNSNDEVKLKVKKFELCKGSMSEYIPCLDNVDEIRKLESVERGER 156
Query: 181 FERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKD 240
FERHCP+ NCLVPAPKGY+ PIPWPRSR+EVWY+NVPH+RLVEDKGGQNWI ++K+
Sbjct: 157 FERHCPVEEKRFNCLVPAPKGYREPIPWPRSRDEVWYSNVPHTRLVEDKGGQNWIRRDKN 216
Query: 241 KFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITM 300
KFKFPGGGTQFIHGADQYLD I+KMVPDIT+G +IRV +D GCGVASFGAYLL RNVITM
Sbjct: 217 KFKFPGGGTQFIHGADQYLDHISKMVPDITFGQNIRVALDVGCGVASFGAYLLSRNVITM 276
Query: 301 SIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLL 360
S+APKD+HENQIQFALERG PAMVAAFATRRL YPSQAFDLIHCSRCRINWTRDDGILLL
Sbjct: 277 SVAPKDIHENQIQFALERGVPAMVAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLL 336
Query: 361 EVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNN 420
E NRMLRAGGYF WAAQPVYKHE+ EE W+EM++LTTRLCW+ +KK+GY+AIW+KP +N
Sbjct: 337 EANRMLRAGGYFVWAAQPVYKHEQNLEEQWEEMINLTTRLCWKFLKKDGYVAIWQKPFDN 396
Query: 421 SCYLNREAGTIPPLCDPDDNPDNVW-----------YVDLKACITRLPENGYGANVSLWP 469
SCYLNREA T PPLCD ++PDN+W YV+LKACI++LPENGYG N++ WP
Sbjct: 397 SCYLNREAETKPPLCDITEDPDNIWYSVLAFPINFTYVNLKACISQLPENGYGVNLTKWP 456
Query: 470 ERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGF 529
RL+TSPDRLQSI+LDA ++RKELFKAESKYWNE+I SYVRA WK M+LRNV+DMRAGF
Sbjct: 457 ARLQTSPDRLQSIKLDALLSRKELFKAESKYWNEVIASYVRAYRWKTMRLRNVIDMRAGF 516
Query: 530 GGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
GGFAAALI+Q D WVMNVVPVSG NTLPVIYDRGLIGVMHDW
Sbjct: 517 GGFAAALIDQNLDSWVMNVVPVSGPNTLPVIYDRGLIGVMHDW 559
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239326|ref|NP_196224.1| putative methyltransferase PMT12 [Arabidopsis thaliana] gi|75262411|sp|Q9FG39.1|PMTC_ARATH RecName: Full=Probable methyltransferase PMT12 gi|10257485|dbj|BAB10206.1| ankyrin-like protein [Arabidopsis thaliana] gi|51536506|gb|AAU05491.1| At5g06050 [Arabidopsis thaliana] gi|58652086|gb|AAW80868.1| At5g06050 [Arabidopsis thaliana] gi|110740549|dbj|BAE98380.1| ankyrin like protein [Arabidopsis thaliana] gi|332003576|gb|AED90959.1| putative methyltransferase PMT12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/578 (67%), Positives = 469/578 (81%), Gaps = 21/578 (3%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNGYVSLSPNL 61
N L N+ FK+SA + +S F+LGK WS DG +R++FFS+ S ++ V+LSP+
Sbjct: 8 NLLRNSIFFKISAFVLISVACFFLGKHWSEDGFRRLIFFSAEPS-----RSPIVALSPDF 62
Query: 62 NKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPPPPPPPERFGIVNEDGTMSDDFEIGE 121
K+++IS LI ++ + P + P P P + FGIVNE+GTMSD+F+IG+
Sbjct: 63 GKTYNISGLIYESHPILPPSLSPPPPP--------DSVELKVFGIVNENGTMSDEFQIGD 114
Query: 122 YDPDLVET-------EWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
YD + ET E + D + T + ++E+C +M EYIPCLDNVEAIK+L S
Sbjct: 115 YDVESAETLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDNVEAIKRLNS 174
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T +GERFER+CP +G GLNC VP P+GY++PIPWPRSR+EVW+NNVPH++LVEDKGGQNW
Sbjct: 175 TARGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNW 234
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
I KE DKFKFPGGGTQFIHGADQYLDQI++M+PDI++G+H RVV+D GCGVASFGAYL+
Sbjct: 235 IYKENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDL+HCSRCRINWTRD
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+LTTRLCW LVKKEGYIAIW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 415 KKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NN+CYL+R AG PPLC+ +D+PDNVWYVDLKACITR+ ENGYGAN++ WP RL T
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANLAPWPARLLT 474
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK++ LRNVLDMRAGFGGFAA
Sbjct: 475 PPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIGLRNVLDMRAGFGGFAA 534
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
AL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDW
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDW 572
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449394|ref|XP_002282557.1| PREDICTED: probable methyltransferase PMT11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/589 (69%), Positives = 476/589 (80%), Gaps = 22/589 (3%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWSDGNQRILFFSSYTSSRTSQQNG--YVSLSPN 60
+P L +S + VSF FFY+GK WS+G Q+++F YTS +T +G + +SPN
Sbjct: 8 DPRRAPSLLTISTFVVVSFAFFYVGKHWSNGYQQLIF---YTSRQTPMASGAPTIGISPN 64
Query: 61 LNKSFDISSLISQNQSLASPYIVPSPAPVDPLPPPP-------------PPPPPERFGIV 107
N +FD+SS+I++NQ+L S P+P PP P + FGIV
Sbjct: 65 FNMTFDVSSMIAKNQTLDSTLPSPAPISSPAPAPPAPIPSPAPAPPAHLAPGSIKTFGIV 124
Query: 108 NEDGTMSDDFEIGEYDPDLVETEWNGD--RNGTEATKSFK--ITRYEMCPGSMREYIPCL 163
+E+GTM+++FE+G+YDP+ VE NG G + SF+ I +++MCP +MREYIPCL
Sbjct: 125 DENGTMAEEFEVGDYDPEFVENWGNGSDAEVGGSSGGSFRFGIKKFKMCPETMREYIPCL 184
Query: 164 DNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHS 223
DN EAI+ LKST GE+FERHCP GLNCLVPAPKGY+TPIPWP+SR+EVW++NVPH+
Sbjct: 185 DNEEAIRNLKSTKNGEKFERHCPERSRGLNCLVPAPKGYRTPIPWPKSRDEVWFSNVPHT 244
Query: 224 RLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGC 283
+LVEDKGGQNWIS +K+KFKFPGGGTQFIHGADQYLDQI+KMVPDI +G H RVV+D GC
Sbjct: 245 KLVEDKGGQNWISVDKNKFKFPGGGTQFIHGADQYLDQISKMVPDIAFGRHTRVVLDVGC 304
Query: 284 GVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 343
GVASFGAYLL RNVIT+SIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDLIH
Sbjct: 305 GVASFGAYLLSRNVITLSIAPKDVHENQIQFALERGVPAMVAAFVTRRLLYPSQAFDLIH 364
Query: 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWE 403
CSRCRI+WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE EE WKEM++LTTRLCWE
Sbjct: 365 CSRCRIDWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEENLEEQWKEMVNLTTRLCWE 424
Query: 404 LVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 463
LVKKEGYIAIW+KP NNSCYLNR+A T PPLCDPDD+PD+VWYVDLKACITRLPE+GYGA
Sbjct: 425 LVKKEGYIAIWQKPFNNSCYLNRKAATKPPLCDPDDDPDDVWYVDLKACITRLPEDGYGA 484
Query: 464 NVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVL 523
N+ WP RL+ PDRLQSI++DA+I+RKELFKAE KYW EII+ Y R L WK KLRNVL
Sbjct: 485 NLPTWPGRLQNYPDRLQSIRMDAYISRKELFKAEYKYWKEIIDGYYRVLKWKNFKLRNVL 544
Query: 524 DMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
DMRAGFGGFAAAL E+K DCWV+NVVPVSG NTLPVIYDRGLIGVMHDW
Sbjct: 545 DMRAGFGGFAAALTERKVDCWVLNVVPVSGPNTLPVIYDRGLIGVMHDW 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 572 | ||||||
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.818 | 0.674 | 0.745 | 1e-215 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.973 | 0.816 | 0.660 | 7.2e-210 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.818 | 0.714 | 0.684 | 1.3e-189 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.716 | 0.696 | 0.490 | 1.5e-108 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.767 | 0.529 | 0.470 | 1.7e-107 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.715 | 0.456 | 0.480 | 2.2e-105 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.783 | 0.581 | 0.452 | 9.5e-105 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.751 | 0.690 | 0.452 | 2.5e-104 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.727 | 0.684 | 0.456 | 1.4e-103 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.772 | 0.574 | 0.449 | 1.8e-103 |
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1936 (686.6 bits), Expect = 1.0e-215, Sum P(2) = 1.0e-215
Identities = 354/475 (74%), Positives = 400/475 (84%)
Query: 104 FGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEA-----TKS-FKITRYEMCPGSMR 157
FGIV+ +G MSDDFE+GE + D VE +W EA +K+ +I ++ MCP SMR
Sbjct: 127 FGIVDANGVMSDDFEVGEVESDTVE-DWGNQTEIVEAKSDGDSKARVRIKKFGMCPESMR 185
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
EYIPCLDN + IK+LKST++GERFERHCP G GLNCLVP PKGY+ PIPWP+SR+EVW+
Sbjct: 186 EYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWF 245
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH+RLVEDKGGQNWIS++K+KFKFPGGGTQFIHGADQYLDQ++KMV DIT+G HIRV
Sbjct: 246 SNVPHTRLVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQMSKMVSDITFGKHIRV 305
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM AAFATRRL YPSQ
Sbjct: 306 AMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQ 365
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
AFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE W EML+LT
Sbjct: 366 AFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLT 425
Query: 398 TRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLP 457
LCW+LVKKEGY+AIW+KP NN CYL+REAGT VWY +LK CI+R+P
Sbjct: 426 ISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIP 485
Query: 458 ENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKM 517
E GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YVRAL WKKM
Sbjct: 486 EKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKWKKM 545
Query: 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
KLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVMHDW
Sbjct: 546 KLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDW 600
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2029 (719.3 bits), Expect = 7.2e-210, P = 7.2e-210
Identities = 382/578 (66%), Positives = 455/578 (78%)
Query: 3 NPLSNTDLFKLSALLFVSFTFFYLGKRWS-DGNQRILFFSSYTSSRTSQQNGYVSLSPNL 61
N L N+ FK+SA + +S F+LGK WS DG +R++FFS+ S ++ V+LSP+
Sbjct: 8 NLLRNSIFFKISAFVLISVACFFLGKHWSEDGFRRLIFFSAEPS-----RSPIVALSPDF 62
Query: 62 NKSFDISSLISQNQSLASPYIVXXXXXXXXXXXXXXXXXXERFGIVNEDGTMSDDFEIGE 121
K+++IS LI ++ + P + + FGIVNE+GTMSD+F+IG+
Sbjct: 63 GKTYNISGLIYESHPILPPSL--------SPPPPPDSVELKVFGIVNENGTMSDEFQIGD 114
Query: 122 YDPDLVET-------EWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKS 174
YD + ET E + D + T + ++E+C +M EYIPCLDNVEAIK+L S
Sbjct: 115 YDVESAETLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDNVEAIKRLNS 174
Query: 175 TDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNW 234
T +GERFER+CP +G GLNC VP P+GY++PIPWPRSR+EVW+NNVPH++LVEDKGGQNW
Sbjct: 175 TARGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNW 234
Query: 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP 294
I KE DKFKFPGGGTQFIHGADQYLDQI++M+PDI++G+H RVV+D GCGVASFGAYL+
Sbjct: 235 IYKENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 295 RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354
RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YPSQAFDL+HCSRCRINWTRD
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 355 DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIW 414
DGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+LTTRLCW LVKKEGYIAIW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 415 KKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGYGANVSLWPERLRT 474
+KP NN+CYL+R AG VWYVDLKACITR+ ENGYGAN++ WP RL T
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGYGANLAPWPARLLT 474
Query: 475 SPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAA 534
PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK++ LRNVLDMRAGFGGFAA
Sbjct: 475 PPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIGLRNVLDMRAGFGGFAA 534
Query: 535 ALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
AL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDW
Sbjct: 535 ALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDW 572
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1822 (646.4 bits), Expect = 1.3e-189, Sum P(2) = 1.3e-189
Identities = 325/475 (68%), Positives = 385/475 (81%)
Query: 103 RFGIVNEDGTMSDDFEIGEYDPDLVETEWNGDRNGTEATKS-----FKITRYEMCPGSMR 157
R GI+NE+G MSD FEIG +DPD ++ + N + K F+I + ++C +
Sbjct: 92 RTGIINENGAMSDSFEIGGFDPDSIDELKSATGNSSVEEKESPEVGFQIEKLKLCDKTKI 151
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN E IK+L +TD+GE +ERHCP L+CL+P P GYK PI WP+SR+++W+
Sbjct: 152 DYIPCLDNEEEIKRLNNTDRGENYERHCPKQS--LDCLIPPPDGYKKPIQWPQSRDKIWF 209
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NNVPH+RLVEDKGGQNWI +EKDKF FPGGGTQFIHGADQYLDQI++M+PDIT+G RV
Sbjct: 210 NNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMIPDITFGSRTRV 269
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
+D GCGVASFGA+L+ RN T+S+APKDVHENQIQFALERG PAMVA FATRRL YPSQ
Sbjct: 270 ALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQ 329
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
+F++IHCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+ +E WKEMLDLT
Sbjct: 330 SFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLT 389
Query: 398 TRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLP 457
R+CWEL+KKEGYIA+W+KP NNSCY++REAGT VWYVD+K CITRLP
Sbjct: 390 NRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLP 449
Query: 458 ENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKM 517
+NGYGANVS WP RL P+RLQSIQ+DA+I+RKE+ KAES++W E++ESYVR WK+
Sbjct: 450 DNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWKEF 509
Query: 518 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
KLRNVLDMRAGFGGFAAAL + DCWVMN+VPVSGFNTLPVIYDRGL G MHDW
Sbjct: 510 KLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDW 564
|
|
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 213/434 (49%), Positives = 278/434 (64%)
Query: 148 RYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPI 206
++++C G+ +YIPCLDN AIKQLKS E ERHCP CL+P P YK P+
Sbjct: 79 KWDLCKGAESVDYIPCLDNYAAIKQLKSRRHMEHRERHCPEPSP--KCLLPLPDNYKPPV 136
Query: 207 PWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMV 266
PWP+SR+ +WY+NVPH +LVE K QNW+ KE + FPGGGTQF G Y++ I K +
Sbjct: 137 PWPKSRDMIWYDNVPHPKLVEYKKEQNWVKKEGEFLVFPGGGTQFKFGVTHYVEFIEKAL 196
Query: 267 PDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAA 326
P I WG +IRVV+D GCGVASFG LL ++VITMS APKD HE QIQFALERG PA ++
Sbjct: 197 PSIKWGKNIRVVLDVGCGVASFGGSLLDKDVITMSFAPKDEHEAQIQFALERGIPATLSV 256
Query: 327 FATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 386
T++L +PS AFDLIHC+RCR++W D G LLE+NR+LR GG+F W+A PVY+ +
Sbjct: 257 IGTQQLTFPSNAFDLIHCARCRVHWDADGGKPLLELNRVLRPGGFFIWSATPVYRDNDRD 316
Query: 387 EEHWKEMLDLTTRLCWELVKK----EGY-IAIWKKPTNNSCYLNREAGTIXXXXXXXXXX 441
W EM+ LT +CW++V K G + I++KPT+ SCY R T
Sbjct: 317 SRIWNEMVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRS--TQDPPLCDKKEA 374
Query: 442 XXVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYW 501
WYV L C+++LP NV WPE P RL S++ + + E K +++ W
Sbjct: 375 NGSWYVPLAKCLSKLPSG----NVQSWPELW---PKRLVSVKPQSISVKAETLKKDTEKW 427
Query: 502 N-EIIESYVR--ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLP 558
+ + + Y++ A++W + RNV+DM AGFGGFAAALI WVMNVVPV +TL
Sbjct: 428 SASVSDVYLKHLAVNWSTV--RNVMDMNAGFGGFAAALIN--LPLWVMNVVPVDKPDTLS 483
Query: 559 VIYDRGLIGVMHDW 572
V+YDRGLIGV HDW
Sbjct: 484 VVYDRGLIGVYHDW 497
|
|
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 216/459 (47%), Positives = 286/459 (62%)
Query: 129 TEWNGDRNGTEATKSF--KIT-RYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKGERFERH 184
T+ +N EA K K+ ++ +C + +YIPCLDNV+AI+ L ST E ERH
Sbjct: 275 TQATESKNEKEAQKGSGDKLDYKWALCNTTAGPDYIPCLDNVQAIRSLPSTKHYEHRERH 334
Query: 185 CPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKF 244
CP + CLVP P GYK PI WP+SR ++WY NVPH++L E KG QNW+ + F
Sbjct: 335 CP--DSPPTCLVPLPDGYKRPIEWPKSREKIWYTNVPHTKLAEYKGHQNWVKVTGEYLTF 392
Query: 245 PGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAP 304
PGGGTQF HGA Y+D I + VP I WG RVV+D GCGVASFG +L R+VITMS+AP
Sbjct: 393 PGGGTQFKHGALHYIDFIQESVPAIAWGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAP 452
Query: 305 KDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR 364
KD HE Q+QFALERG PA+ A T RLP+P + FD++HC+RCR+ W + G LLLE+NR
Sbjct: 453 KDEHEAQVQFALERGIPAISAVMGTTRLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNR 512
Query: 365 MLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVK--KE---GY-IAIWKKPT 418
+LR GG+F W+A PVY+ + E WK M +L ++CWELV K+ G +A ++KPT
Sbjct: 513 VLRPGGFFVWSATPVYQKKTEDVEIWKAMSELIKKMCWELVSINKDTINGVGVATYRKPT 572
Query: 419 NNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY--GAN-VSLWPERLRTS 475
+N CY NR + W V L+AC+ PE+ G+ WP RL +
Sbjct: 573 SNECYKNRSE-PVPPICADSDDPNASWKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKA 631
Query: 476 PDRLQSIQLDAF-IARKELFKAESKYWNEII-ESYVRALHWKKMKLRNVLDMRAGFGGFA 533
P L S Q + A E F A+ ++W ++ +SY+ L +RNV+DMRA +GGFA
Sbjct: 632 PFWLSSSQTGVYGKAAPEDFSADYEHWKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFA 691
Query: 534 AALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
AAL + K WVMNVVP+ +TL +IY+RGL G+ HDW
Sbjct: 692 AALRDLKV--WVMNVVPIDSPDTLAIIYERGLFGIYHDW 728
|
|
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 205/427 (48%), Positives = 273/427 (63%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN EAI +L+S E ERHCP + CLVP P+GYK I WP SR+++WY
Sbjct: 381 DYIPCLDNEEAIMKLRSRRHFEHRERHCPEDPP--TCLVPLPEGYKEAIKWPESRDKIWY 438
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
+NVPH++L E KG QNW+ + FPGGGTQFIHGA Y+D + + + +I WG RV
Sbjct: 439 HNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSLKNIAWGKRTRV 498
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
++D GCGVASFG +L R+VI MS+APKD HE Q+QFALER PA+ A ++RLP+PS+
Sbjct: 499 ILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSKRLPFPSR 558
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLT 397
FDLIHC+RCR+ W + G+LLLE+NRMLR GGYF W+A PVY+ E + WKEM LT
Sbjct: 559 VFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIWKEMSALT 618
Query: 398 TRLCWELV-----KKEGY-IAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKA 451
LCWELV K G AI++KP N CY R+ WYV L+A
Sbjct: 619 KSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNK-PPLCKNNDDANAAWYVPLQA 677
Query: 452 CITRLPENGY--GANVSL-WPERLRTSPDRLQSIQLDAF--IARKELFKAESKYWNEIIE 506
C+ ++P N G+ + WP RL+T P L S Q+ + A ++ F + ++W ++
Sbjct: 678 CMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRD-FTTDYEHWKHVVS 736
Query: 507 S-YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL 565
Y+ + +RNV+DMRA +GGFAAAL + WVMNVV ++ +TLP+IY+RGL
Sbjct: 737 KVYMNEIGISWSNVRNVMDMRAVYGGFAAAL--KDLQVWVMNVVNINSPDTLPIIYERGL 794
Query: 566 IGVMHDW 572
G+ HDW
Sbjct: 795 FGIYHDW 801
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 210/464 (45%), Positives = 284/464 (61%)
Query: 120 GEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMR-EYIPCLDNVEAIKQLKSTDKG 178
G + LVE++ + +K ++ C + +YIPCLDN +AIK+L +T
Sbjct: 211 GAWSTQLVESQNEKKAQQSSISKDQSSYGWKTCNVTAGPDYIPCLDNWQAIKKLHTTMHY 270
Query: 179 ERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKE 238
E ERHCP +CLV P GYK I WP+SR ++WYNNVPH++L E KG QNW+
Sbjct: 271 EHRERHCPEESP--HCLVSLPDGYKRSIKWPKSREKIWYNNVPHTKLAEIKGHQNWVKMS 328
Query: 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVI 298
+ FPGGGTQF +GA Y+D I + P I WG+ RV++D GCGVASFG YL R+V+
Sbjct: 329 GEHLTFPGGGTQFKNGALHYIDFIQQSHPAIAWGNRTRVILDVGCGVASFGGYLFERDVL 388
Query: 299 TMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGIL 358
+S APKD HE Q+QFALERG PAM+ T+RLP+P FDLIHC+RCR+ W + G L
Sbjct: 389 ALSFAPKDEHEAQVQFALERGIPAMLNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKL 448
Query: 359 LLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV--KKEGY----IA 412
LLE+NR LR GG+F W+A PVY+ E WK M +LT +CW+LV KK+ A
Sbjct: 449 LLELNRALRPGGFFVWSATPVYRKNEEDSGIWKAMSELTKAMCWKLVTIKKDKLNEVGAA 508
Query: 413 IWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY--GAN-VSLWP 469
I++KPT+N CY N+ W V L+AC+ ++ E+ GA ++WP
Sbjct: 509 IYQKPTSNKCY-NKRPQNEPPLCKDSDDQNAAWNVPLEACMHKVTEDSSKRGAVWPNMWP 567
Query: 470 ERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ESYVRALHWKKMKLRNVLDMRAG 528
ER+ T+P+ L S + E F A+ + W I+ ++Y+ + +RNV+DMRA
Sbjct: 568 ERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKTIVSKAYLNDMGIDWSNVRNVMDMRAV 627
Query: 529 FGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
+GGFAAAL + K WVMNVVPV +TLP+IY+RGL G+ HDW
Sbjct: 628 YGGFAAALKDLKL--WVMNVVPVDAPDTLPIIYERGLFGIYHDW 669
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 2.5e-104, Sum P(2) = 2.5e-104
Identities = 205/453 (45%), Positives = 278/453 (61%)
Query: 134 DRNGTEATKSFKITR-YEMCPGSMREYIPCLDNVEAIKQLK-STDKG--ERFERHCPLNG 189
D + A S + + + +C E IPCLD I Q++ D E +ERHCP
Sbjct: 68 DDSVANAEDSLVVAKSFPVCDDRHSEIIPCLDR-NFIYQMRLKLDLSLMEHYERHCPPPE 126
Query: 190 TGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGT 249
NCL+P P GYK PI WP+SR+EVW N+PH+ L ++K QNW+ ++ +K FPGGGT
Sbjct: 127 RRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGT 186
Query: 250 QFIHGADQYLDQIAKMVP---DITWGH-HIRVVMDAGCGVASFGAYLLPRNVITMSIAPK 305
F +GAD+Y+ IA M+ D+ +R V+D GCGVASFGAYLL +++TMS+AP
Sbjct: 187 HFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPN 246
Query: 306 DVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRM 365
DVH+NQIQFALERG PA + T+RLPYPS++F+ HCSRCRI+W + DG+LLLE++R+
Sbjct: 247 DVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRV 306
Query: 366 LRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLN 425
LR GGYFA+++ Y +E + WKEM L R+CW + K +W+KP +N CYL
Sbjct: 307 LRPGGYFAYSSPEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLE 366
Query: 426 REAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY---GANVSLWPERLRTSPDRLQSI 482
RE GT V V ++ACIT ++ + G+ ++ WP RL +SP RL
Sbjct: 367 REPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADF 426
Query: 483 --QLDAFIARKELFKAE-SKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ 539
D F EL+K + YWN ++ S V K +RN++DM+A G FAAAL ++
Sbjct: 427 GYSTDMFEKDTELWKQQVDSYWN-LMSSKV-----KSNTVRNIMDMKAHMGSFAAALKDK 480
Query: 540 KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
D WVMNVV G NTL +IYDRGLIG H+W
Sbjct: 481 --DVWVMNVVSPDGPNTLKLIYDRGLIGTNHNW 511
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 199/436 (45%), Positives = 272/436 (62%)
Query: 149 YEMCPGSMREYIPCLDNVEAIKQLK-STDKG--ERFERHCPLNGTGLNCLVPAPKGYKTP 205
+ +C E IPCLD I Q++ D E +ERHCP NCL+P P GYK P
Sbjct: 76 FPVCDDRHSELIPCLDR-NLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVP 134
Query: 206 IPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKM 265
I WP+SR+EVW N+PH+ L +K QNW+ + DK FPGGGT F +GAD+Y+ +A M
Sbjct: 135 IKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANM 194
Query: 266 V--PD--ITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAP 321
+ P+ + G +R V D GCGVASFG YLL +++TMS+AP DVH+NQIQFALERG P
Sbjct: 195 LNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIP 254
Query: 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYK 381
A + T+RLPYPS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++ Y
Sbjct: 255 ASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYA 314
Query: 382 HEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXX 441
+E W+EM L R+CW++ K IW+KP N CYL RE GT
Sbjct: 315 QDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDP 374
Query: 442 XXVWYVDLKACITRLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAES 498
VW V+++ACIT ++ + G+ ++ WP RL + P RL F +F+ ++
Sbjct: 375 DAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTGMFEKDT 429
Query: 499 KYWNEIIESYVRAL--HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNT 556
+ W + +++Y L + +RN++DM+A G FAAAL E+ D WVMNVVP G NT
Sbjct: 430 ELWRQRVDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPEDGPNT 487
Query: 557 LPVIYDRGLIGVMHDW 572
L +IYDRGL+G +H W
Sbjct: 488 LKLIYDRGLMGAVHSW 503
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 208/463 (44%), Positives = 279/463 (60%)
Query: 120 GEYDPDLVETEWNGDRNGTEATKSFKITRYEMCPGSMREYIPCLDNVEAIKQLKSTDKGE 179
G + LVE++ ++ ++ +K+ P +YIPCLDN +AI++L ST E
Sbjct: 218 GAWSTQLVESQ--NEKKAQVSSIKWKVCNVTAGP----DYIPCLDNWQAIRKLHSTKHYE 271
Query: 180 RFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISKEK 239
ERHCP CLV P+GYK I WP+SR ++WY N+PH++L E KG QNW+
Sbjct: 272 HRERHCPEESP--RCLVSLPEGYKRSIKWPKSREKIWYTNIPHTKLAEVKGHQNWVKMSG 329
Query: 240 DKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVIT 299
+ FPGGGTQF +GA Y+D + + PDI WG+ RV++D GCGVASFG YL R+V+
Sbjct: 330 EYLTFPGGGTQFKNGALHYIDFLQESYPDIAWGNRTRVILDVGCGVASFGGYLFDRDVLA 389
Query: 300 MSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILL 359
+S APKD HE Q+QFALERG PAM T+RLP+P FDLIHC+RCR+ W + G LL
Sbjct: 390 LSFAPKDEHEAQVQFALERGIPAMSNVMGTKRLPFPGSVFDLIHCARCRVPWHIEGGKLL 449
Query: 360 LEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWEL--VKKEGY----IAI 413
LE+NR LR GG+F W+A PVY+ E WK M LT +CWEL +KK+ AI
Sbjct: 450 LELNRALRPGGFFVWSATPVYRKTEEDVGIWKAMSKLTKAMCWELMTIKKDELNEVGAAI 509
Query: 414 WKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITRLPENGY--GAN-VSLWPE 470
++KP +N CY N + W V L+ACI ++ E+ GA WPE
Sbjct: 510 YQKPMSNKCY-NERSQNEPPLCKDSDDQNAAWNVPLEACIHKVTEDSSKRGAVWPESWPE 568
Query: 471 RLRTSPDRLQSIQLDAFIARKELFKAESKYWNEII-ESYVRALHWKKMKLRNVLDMRAGF 529
R+ T P L S + +E F A+ + W I+ +SY+ + +RNV+DMRA +
Sbjct: 569 RVETVPQWLDSQEGVYGKPAQEDFTADHERWKTIVSKSYLNGMGIDWSYVRNVMDMRAVY 628
Query: 530 GGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 572
GGFAAAL + K WVMNVVP+ +TLP+IY+RGL G+ HDW
Sbjct: 629 GGFAAALKDLKL--WVMNVVPIDSPDTLPIIYERGLFGIYHDW 669
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O22285 | PMTB_ARATH | 2, ., 1, ., 1, ., - | 0.6655 | 0.9825 | 0.8097 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 572 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 8e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 6e-04 | |
| pfam05308 | 248 | pfam05308, Mito_fiss_reg, Mitochondrial fission re | 0.002 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 723 bits (1869), Expect = 0.0
Identities = 251/421 (59%), Positives = 299/421 (71%), Gaps = 10/421 (2%)
Query: 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWY 217
+YIPCLDN AIK L S ++ E ERHCP + L CLVP P GYKTPIPWP+SR++VWY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 218 NNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRV 277
NVPH++L E+KGGQNW+ E DKF+FPGGGTQF HGAD Y+D +A+M+PDI WG +R
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
+D GCGVASFGAYLL R+V+TMS APKDVHE Q+QFALERG PAM+ TRRLPYPS+
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDL 396
+FD+ HCSRC I W +DGILLLEV+R+LR GGYF + PVY + EE +E WK M L
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEAL 240
Query: 397 TTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRL 456
LCW+LV K+G IAIW+KP NNSCY RE G PPLC D+PD WYV ++ACIT L
Sbjct: 241 AKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPL 300
Query: 457 PEN---GYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALH 513
PE G + WPERL P RL S Q E FKA+++ W + Y R L
Sbjct: 301 PEVSHEVGGGWLEKWPERLTAVPPRLASGQ--IGGVSAEAFKADTELWKRRVSKYKRLLK 358
Query: 514 --WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHD 571
K ++RNV+DM AGFGGFAAALI+ WVMNVVPV +TLPVIYDRGLIG+ HD
Sbjct: 359 LLIDKGRVRNVMDMNAGFGGFAAALIDDP--VWVMNVVPVDSPDTLPVIYDRGLIGIYHD 416
Query: 572 W 572
W
Sbjct: 417 W 417
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-09
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 280 DAGCGVASFGAYL---LPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 336
D GCG L V + D+ + A +R V A LP+P
Sbjct: 2 DVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKFVVGDAED-LPFPD 55
Query: 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373
++FD++ S ++ D L E+ R+L+ GG
Sbjct: 56 ESFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 279 MDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER------GAPAMVAAFATRRL 332
+D GCG + LL D+ ++ A ER V +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTG-VDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF 372
+FD++ S ++ D +L + R+L+ GG
Sbjct: 60 DLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAP------AMVAAFATRR 331
++D GCG L +++ D+ + ++ A ER +VA R
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGV--DISKEALELAKERLRDKGPKVRFVVADA--RD 56
Query: 332 LPYPSQAFDLIHCSRCRIN-WTRDDGILLL-EVNRMLRAGG 370
LP+ +FDL+ C+ ++ + LL E R+LR GG
Sbjct: 57 LPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 56 SLSPNLNKSFDISSLISQNQSLASPYIV-PSPAPVDPLPPPPPPPPP 101
S + S + S S I P+ PV +PPPPPPPPP
Sbjct: 146 EQSNSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPP 192
|
In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 572 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.83 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.83 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.66 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.61 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.6 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.53 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.52 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.51 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.48 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.48 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.46 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.46 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.46 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.45 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.44 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.44 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.43 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.43 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.42 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.41 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.38 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.38 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.37 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.36 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.36 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.33 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.32 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.29 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.28 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.25 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.25 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.25 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.23 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.23 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.22 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.22 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.2 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.19 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.18 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.18 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.18 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.18 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.18 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.16 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.16 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.14 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.14 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.13 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.13 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.13 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.12 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.11 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.11 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.1 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.09 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.08 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.07 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.07 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.07 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.07 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.06 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.06 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.06 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.05 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.05 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.03 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.03 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.02 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.01 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.99 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.99 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.98 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.95 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.95 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.94 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.93 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.92 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.9 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.9 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.89 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.88 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.88 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.87 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.87 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.87 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.85 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.82 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.81 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.81 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.79 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.77 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.74 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.73 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.73 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.69 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.68 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.68 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.68 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.67 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.67 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.67 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.6 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.6 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.57 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.56 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.55 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.54 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.54 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.52 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.52 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.51 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.5 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.48 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.44 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.44 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.43 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.39 | |
| PLN02366 | 308 | spermidine synthase | 98.38 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.35 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.34 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.34 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.32 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.32 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.31 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.3 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.28 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.27 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.26 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.26 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.26 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.26 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.22 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.2 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.19 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.19 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.14 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.14 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.14 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.06 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.03 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.02 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.98 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.95 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.91 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.91 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.91 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.9 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.9 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.87 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.87 | |
| PLN02476 | 278 | O-methyltransferase | 97.85 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.82 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.81 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.81 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.81 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.79 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.79 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.73 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.73 | |
| PLN02823 | 336 | spermine synthase | 97.72 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.71 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.68 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.63 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.62 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.6 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.6 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.6 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.56 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.55 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.55 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.49 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.49 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.48 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.46 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.4 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.38 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.34 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.34 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.33 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.29 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.28 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.27 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.27 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.24 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.22 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.18 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.15 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.12 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.09 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.09 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.06 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.01 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.97 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.93 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.91 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.9 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.88 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.78 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.78 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.66 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.54 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.46 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.41 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.3 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.21 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.19 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.15 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.05 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.98 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.91 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.85 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.81 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 95.71 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.53 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.49 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.44 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.26 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.21 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.04 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.98 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.28 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.93 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.88 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.86 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.79 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 93.76 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.25 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 92.56 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 92.5 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.24 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 92.22 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 92.15 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.12 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 92.07 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.05 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 91.67 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.65 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 91.43 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 91.0 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.69 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 89.64 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 89.13 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.67 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 88.0 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.93 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 87.91 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 86.47 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 83.67 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 83.6 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 83.48 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 83.14 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 82.65 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 82.23 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 82.12 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 81.83 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 81.76 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 81.34 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 80.5 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-113 Score=908.52 Aligned_cols=411 Identities=60% Similarity=1.115 Sum_probs=389.1
Q ss_pred cccccCCcHHHHHhcccCccccccccCCCCCCCCCccccCCCCCCCCCCCCCCCCCccccCCCCCccccccccCCCchhc
Q 008262 158 EYIPCLDNVEAIKQLKSTDKGERFERHCPLNGTGLNCLVPAPKGYKTPIPWPRSRNEVWYNNVPHSRLVEDKGGQNWISK 237 (572)
Q Consensus 158 ~y~pC~d~~~~~~~~~~~~~~~~~er~Cp~~~~~~~Clv~~P~~Y~~P~~wP~srd~~W~~nvp~~~L~~~k~~qnWv~~ 237 (572)
|||||+|+.++++++++++++||+|||||+.+++++||||+|++|+.|++||+|||++||+|+||+.|+++|+.||||+.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~ 317 (572)
+|++|+|||||++|++|++.|+++|.++++.+..++..+++||+|||+|+|+++|++++|+++.+++.+.+++++|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 99999999999999999999999999999865567888999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCC-CCHHHHHHHHHHHHhh
Q 008262 318 RGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDL 396 (572)
Q Consensus 318 rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~-~tl~EL~~~w~~~e~~ 396 (572)
||+++++.....++|||++++||+|||+.|++.|..+...+|.|++|+|||||+|+++.+|++ .+.+++.+.|.+++++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 999998887778999999999999999999999999889999999999999999999999999 7788999999999999
Q ss_pred hhhhchhhhhccCcEEEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccC---CcCCCCCCCCCCCC
Q 008262 397 TTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPEN---GYGANVSLWPERLR 473 (572)
Q Consensus 397 ~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~---~~Ga~~~~wp~rl~ 473 (572)
++.+||+.+.++++++||+||.++.|+..++.+..+++|+.+++++.+||.+|++||+.+++. ..|.++.+||+||.
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 999999999999999999999999999999888899999988999999999999999999965 34557889999999
Q ss_pred CCHHHHHHHHHhHHHHHHHHhhhcchhHHHHHHHHHHhcc--CCCCcEEeeecccccchhHHHHhhcCCCCceeeeccCC
Q 008262 474 TSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 551 (572)
Q Consensus 474 ~~p~rl~~~~~~~Y~~~~e~f~~d~~~w~~~v~~Y~~~l~--~~~~~~rnvmdm~a~~ggfaaal~~~~~~~wvmnvvp~ 551 (572)
+.|+||....+ .+...|.|.+|+++|+++|++|+++++ +++++|||||||||+||||||||++++ ||||||||+
T Consensus 321 ~~P~rl~~~~~--~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~ 396 (506)
T PF03141_consen 321 AVPPRLSSGSI--PGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPV 396 (506)
T ss_pred cCchhhhcCCc--CCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCC--ceEEEeccc
Confidence 99999987321 122369999999999999999999988 889999999999999999999999986 599999999
Q ss_pred CCCCCccceeccccccccccC
Q 008262 552 SGFNTLPVIYDRGLIGVMHDW 572 (572)
Q Consensus 552 ~~~~tl~~i~~rglig~~hdw 572 (572)
.++|||||||||||||+||||
T Consensus 397 ~~~ntL~vIydRGLIG~yhDW 417 (506)
T PF03141_consen 397 SGPNTLPVIYDRGLIGVYHDW 417 (506)
T ss_pred CCCCcchhhhhcccchhccch
Confidence 999999999999999999999
|
; GO: 0008168 methyltransferase activity |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-21 Score=189.69 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=184.1
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
+++..++++.+-++ .+....++|||||.|...+.|..+ +++-+|.|..|+..+ +-+...++.....+.|.|.|
T Consensus 56 eeig~rlaDrvfD~--kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~L 131 (325)
T KOG2940|consen 56 EEIGDRLADRVFDC--KKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFL 131 (325)
T ss_pred HHHHHHHHHHHHHH--hhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcc
Confidence 44555666666554 356678999999999999999887 788899999887443 22333445555667788999
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIA 412 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~ 412 (572)
+|.+++||+|+++. ..||.+|.+..+.+|...|||+|.|+.+.+ +.+++.||+-+.+-. .++..|++.
T Consensus 132 df~ens~DLiisSl-slHW~NdLPg~m~~ck~~lKPDg~Fiasml-ggdTLyELR~slqLA----------elER~GGiS 199 (325)
T KOG2940|consen 132 DFKENSVDLIISSL-SLHWTNDLPGSMIQCKLALKPDGLFIASML-GGDTLYELRCSLQLA----------ELEREGGIS 199 (325)
T ss_pred cccccchhhhhhhh-hhhhhccCchHHHHHHHhcCCCccchhHHh-ccccHHHHHHHhhHH----------HHHhccCCC
Confidence 99999999999885 499999999999999999999999999876 889999998765322 123444444
Q ss_pred Eeeccch---hHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCCcCCCCCCCCCCCCCCHHHHHHHHHhHHHH
Q 008262 413 IWKKPTN---NSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIA 489 (572)
Q Consensus 413 iw~kpl~---~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~~Ga~~~~wp~rl~~~p~rl~~~~~~~Y~~ 489 (572)
..-.|+. +.+.++.+|||..+.+| .+.+.+.|+.+.++|.+|+ ++|.+...|.+.....|..+.+.. ++|.
T Consensus 200 phiSPf~qvrDiG~LL~rAGF~m~tvD--tDEi~v~Yp~mfeLm~dLq--~MgEsn~~~~Rn~~l~Ret~vAaa-AiY~- 273 (325)
T KOG2940|consen 200 PHISPFTQVRDIGNLLTRAGFSMLTVD--TDEIVVGYPRMFELMEDLQ--GMGESNAALNRNAILNRETMVAAA-AIYQ- 273 (325)
T ss_pred CCcChhhhhhhhhhHHhhcCcccceec--ccceeecCchHHHHHHHHH--hhcccchhhccCccccHHHHHHHH-HHHH-
Confidence 4444543 57889999999999887 8889999999999999999 888877777777677888888877 7897
Q ss_pred HHHHhhhcchhHHHHHH-HHHHhcc
Q 008262 490 RKELFKAESKYWNEIIE-SYVRALH 513 (572)
Q Consensus 490 ~~e~f~~d~~~w~~~v~-~Y~~~l~ 513 (572)
+.|+.+++...+.++ .|..+|+
T Consensus 274 --smya~e~~~iPATfqiiy~iGWk 296 (325)
T KOG2940|consen 274 --SMYATEDGTIPATFQIIYMIGWK 296 (325)
T ss_pred --HHhcCCCCCcceeEEEEEEEccC
Confidence 899999998777766 5555554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=182.34 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
+....+.+.+.++ ..+..+|||+|||+|.++..|... +|+++|+++.|+.. ++++.....+...|.+.+
T Consensus 27 q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~-----a~~~~~~~~~~~~d~~~~ 97 (251)
T PRK10258 27 QRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQ-----ARQKDAADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHH-----HHhhCCCCCEEEcCcccC
Confidence 4455566666665 235678999999999999888765 89999999987743 333332223445678889
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIA 412 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~ 412 (572)
|+++++||+|+|+.+ +||..++..+|.++.|+|||||.++++++ +..+..|+++.|..++...+.. .
T Consensus 98 ~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~el~~~~~~~~~~~~~~--~--------- 164 (251)
T PRK10258 98 PLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTL-VQGSLPELHQAWQAVDERPHAN--R--------- 164 (251)
T ss_pred cCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeC-CCCchHHHHHHHHHhccCCccc--c---------
Confidence 999999999998865 78889999999999999999999999985 7788899888886554321111 0
Q ss_pred EeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCCcCCCCCCCCCCCCCCHHHHHHHH
Q 008262 413 IWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPERLRTSPDRLQSIQ 483 (572)
Q Consensus 413 iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~~Ga~~~~wp~rl~~~p~rl~~~~ 483 (572)
+. +..+...++++.++. + ..+..+..|.++.++|++||.+|+++....+.++ ..+|.+++++.
T Consensus 165 -~~-~~~~l~~~l~~~~~~---~--~~~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~-~~~~~~~~~~~ 227 (251)
T PRK10258 165 -FL-PPDAIEQALNGWRYQ---H--HIQPITLWFDDALSAMRSLKGIGATHLHEGRDPR-ILTRSQLQRLQ 227 (251)
T ss_pred -CC-CHHHHHHHHHhCCce---e--eeeEEEEECCCHHHHHHHHHHhCCCCCCCCCCCC-CCcHHHHHHHH
Confidence 11 112334455555553 2 3677899999999999999954444323333333 66788887765
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=154.49 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=90.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~ 331 (572)
...+.+.+.+. ..++.+|||||||||.++..+++. +|+++|+|+.|+..+.... .+.+.. ..+...|++.
T Consensus 38 ~Wr~~~i~~~~----~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~-~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 38 LWRRALISLLG----IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKL-KKKGVQNVEFVVGDAEN 112 (238)
T ss_pred HHHHHHHHhhC----CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHh-hccCccceEEEEechhh
Confidence 34444555544 236799999999999999998876 7999999999996665333 232322 4456678999
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|||+|++||+|.++.. ++...|.+.+|+|++|+|||||.+++..+
T Consensus 113 LPf~D~sFD~vt~~fg-lrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 113 LPFPDNSFDAVTISFG-LRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCCCccCEEEeeeh-hhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999987 55558999999999999999999988865
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=151.76 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.++.+|||+|||||.++..++++ .|+++|+|+.|+..++............+...|++.||+++++||+|+|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 45689999999999999888764 7999999999997776544433222455666789999999999999999987
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+. +|...+|+|++|+|||||.+++.++
T Consensus 126 lrn~-~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNF-PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG--SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhh-CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 5555 8899999999999999999998864
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=141.57 Aligned_cols=180 Identities=17% Similarity=0.261 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
+......+.+.+.... .....+|||||||+|.++..+++. +++++|+++.++..+..... ....+...|.+
T Consensus 16 q~~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~ 90 (240)
T TIGR02072 16 QREMAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchh
Confidence 3344555555555321 123478999999999998888765 68999999877643332111 12234556778
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCc
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~ 410 (572)
.+++++++||+|+++.+ +||..++..+|.++.++|||||.++++++ ......++...+... .. .
T Consensus 91 ~~~~~~~~fD~vi~~~~-l~~~~~~~~~l~~~~~~L~~~G~l~~~~~-~~~~~~~~~~~~~~~-----~~--~------- 154 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFSTF-GPGTLHELRQSFGQH-----GL--R------- 154 (240)
T ss_pred hCCCCCCceeEEEEhhh-hhhccCHHHHHHHHHHHcCCCcEEEEEeC-CccCHHHHHHHHHHh-----cc--C-------
Confidence 88888899999999877 56668889999999999999999999974 566666555443210 00 0
Q ss_pred EEEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCCcC
Q 008262 411 IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYG 462 (572)
Q Consensus 411 i~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~~G 462 (572)
+ .+..+...++.++ |....+. .......|.+...+++.++.+|.+
T Consensus 155 ---~-~~~~~~~~~l~~~-f~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~ 199 (240)
T TIGR02072 155 ---Y-LSLDELKALLKNS-FELLTLE--EELITLSFDDPLDVLRHLKKTGAN 199 (240)
T ss_pred ---C-CCHHHHHHHHHHh-cCCcEEE--EEEEEEeCCCHHHHHHHHHHhccC
Confidence 0 1122345566666 7665544 566778899999999999955543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=125.90 Aligned_cols=90 Identities=27% Similarity=0.465 Sum_probs=70.4
Q ss_pred EEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 279 MDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 279 LDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
||+|||+|.++..|++. +|+++|+++.++.. ++++.. ...+...+.+.+|+++++||+|+|..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999998876 79999999887643 333322 1225566789999999999999999886666 8
Q ss_pred ChHHHHHHHHHhccCCeEEEE
Q 008262 354 DDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 354 d~~~~L~ei~RvLKPGG~lv~ 374 (572)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=140.99 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.+.+.+.+. ..+..+|||||||+|..+..|+.. +|+++|+++.++..+...... .....+...|...+|++
T Consensus 41 ~~~~l~~l~----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 41 TTKILSDIE----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHHhCC----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCC
Confidence 555666654 246689999999999988888653 799999999887554432221 11233445567788899
Q ss_pred CCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|++..+++|+.. +...+|++++|+|||||+|+++..
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999888788753 678999999999999999999864
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-14 Score=141.68 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHH--HHcCC-CcEEEeccccCCCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFA--LERGA-PAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A--~~rg~-~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..+++. +|+|+|+|+.|+..+..+.. ..... ...+...|.+.+|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45689999999999988877653 79999999999976653322 11122 234556678999999999999999
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+++++ .++..+|+|++|+|||||++++.+.
T Consensus 152 ~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNV-VDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccC-CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8875555 7899999999999999999999975
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=146.27 Aligned_cols=122 Identities=16% Similarity=0.279 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHhcccc-ccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEec
Q 008262 254 GADQYLDQIAKMVPDI-TWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAF 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i-~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~ 327 (572)
.+..+++++.+.+..- ....+..+|||||||+|.++..|++. +|+|+|+++.++..+.. .+.+.+. ...+...
T Consensus 97 aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~ 175 (340)
T PLN02244 97 AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVA 175 (340)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEc
Confidence 4445566666655410 00145678999999999999888764 89999999988865543 3444444 2345566
Q ss_pred cccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|...+|+++++||+|+|..+++|+ .|...++++++|+|||||.|++++.
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGEHM-PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CcccCCCCCCCccEEEECCchhcc-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 788899999999999999887787 7889999999999999999999863
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=137.60 Aligned_cols=184 Identities=19% Similarity=0.203 Sum_probs=112.2
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
..+.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.|+..+ +++.....+...|.+.+.
T Consensus 19 ~~~~ll~~~~----~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~~~~~~~~~d~~~~~ 89 (258)
T PRK01683 19 PARDLLARVP----LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRLPDCQFVEADIASWQ 89 (258)
T ss_pred HHHHHHhhCC----CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhCCCCeEEECchhccC
Confidence 4445555554 245689999999999999888764 799999999877443 333223334455666554
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhcc-CcEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKE-GYIA 412 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~-g~i~ 412 (572)
++++||+|+|+.+ +||..+...+++++.++|||||.+++..+ ....... .. .+........|...-.. +...
T Consensus 90 -~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~~~~~~~-~~~~~~~-~~---~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 90 -PPQALDLIFANAS-LQWLPDHLELFPRLVSLLAPGGVLAVQMP-DNLDEPS-HV---LMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred -CCCCccEEEEccC-hhhCCCHHHHHHHHHHhcCCCcEEEEECC-CCCCCHH-HH---HHHHHHccCchHHHhccccccC
Confidence 4569999999876 56768889999999999999999999853 2221111 11 12222222223322111 1010
Q ss_pred EeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCC
Q 008262 413 IWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENG 460 (572)
Q Consensus 413 iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~ 460 (572)
...........++.++|+...+. .......|.+..+++..++.++
T Consensus 163 ~~~~~~~~~~~~l~~~g~~v~~~---~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T PRK01683 163 APLPPPHAYYDALAPAACRVDIW---HTTYYHPMPSAQAIVEWVKGTG 207 (258)
T ss_pred cCCCCHHHHHHHHHhCCCceeee---eeeeeeecCCchhhhhhhhhcc
Confidence 01111224566777888754222 3345567778888888777443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=143.14 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..|+.. +|+|+|+++.++..++.. +...+. ...+...+++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4568999999999999988765 799999999988666533 222221 23345556788888888999999999887
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .|+..+|.++.|+|||||.+++++.
T Consensus 210 Hv-~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HV-ANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hc-CCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 77 7889999999999999999999974
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=140.62 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=84.8
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHH-HcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~-~rg~~~~~~~~d~e~LPf 334 (572)
.+.+...+.. ..+++|||||||+|.++..+++. .|+|+|+|+.++.+....... .......+...+.+.+|+
T Consensus 111 ~~~l~~~l~~----l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSP----LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 3444555542 34589999999999999988775 599999999887543221111 112234455567888988
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|..+++|. .++..+|++++++|||||.|++.+.
T Consensus 187 -~~~FD~V~s~~vl~H~-~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHR-RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -cCCcCEEEECChhhcc-CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 7899999999887776 7889999999999999999999864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-14 Score=129.90 Aligned_cols=94 Identities=31% Similarity=0.582 Sum_probs=75.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||||||+|.++..|.+. +++|+|+++.++.. . .......+....+.++++||+|+|+.+++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 45689999999999999999877 89999999977643 1 111222223344567899999999988666
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .++..+|+++.++|||||+++++++
T Consensus 91 ~-~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 91 L-PDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp S-SHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred c-ccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 6 7899999999999999999999985
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=138.29 Aligned_cols=165 Identities=19% Similarity=0.328 Sum_probs=106.0
Q ss_pred CCCCCCCCCccccCCCCCCCCCCC-CCCCCCccccCCCCCccccccccCCCchhccCCeeeccCCCccccccHHHHHHHH
Q 008262 184 HCPLNGTGLNCLVPAPKGYKTPIP-WPRSRNEVWYNNVPHSRLVEDKGGQNWISKEKDKFKFPGGGTQFIHGADQYLDQI 262 (572)
Q Consensus 184 ~Cp~~~~~~~Clv~~P~~Y~~P~~-wP~srd~~W~~nvp~~~L~~~k~~qnWv~~~g~~~~Fpggg~~f~~g~~~~i~~L 262 (572)
.|+.. +|+..+.+||..-++ |.+.. ..+ ......+..+. .|...| .|....+..++.+
T Consensus 20 ~C~~~----h~fd~a~~Gy~~ll~~~~~~~--------~~~-----~d~~~~~~ar~---~fl~~g-~y~~l~~~i~~~l 78 (272)
T PRK11088 20 ICPQN----HQFDCAKEGYVNLLPVQHKRS--------KDP-----GDNKEMMQARR---AFLDAG-HYQPLRDAVANLL 78 (272)
T ss_pred EcCCC----CCCccccCceEEeccccccCC--------CCC-----CcCHHHHHHHH---HHHHCC-ChHHHHHHHHHHH
Confidence 78875 489999999988766 32221 000 01111122111 222221 2333333443444
Q ss_pred HHhccccccCCCCCEEEEECCCCchhHHHhccC-------CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 263 AKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 263 ~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.+.+. ....+|||+|||+|.++..|++. .++|+|+|+.++. .|.++.....+...+...+|++
T Consensus 79 ~~~l~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~-----~A~~~~~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 79 AERLD-----EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIK-----YAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHhcC-----CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH-----HHHHhCCCCeEEEeecccCCCc
Confidence 44433 34578999999999998887643 4899999988774 4444444445556678899999
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+++||+|++... ...+.|++|+|||||+|++.+ |...++.++++
T Consensus 149 ~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~-p~~~~l~el~~ 192 (272)
T PRK11088 149 DQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVT-PGPRHLFELKG 192 (272)
T ss_pred CCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEe-CCCcchHHHHH
Confidence 999999997543 234689999999999999997 47777777654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=136.55 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=83.8
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc------CCeEEEeCCccchHHHHHHHHHHcCC--CcEE
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGA--PAMV 324 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~------~~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~ 324 (572)
.+++...+.+...+... ..+..+|||||||+|.++..++. .+|+++|+|+.|+..++.+... .+. ...+
T Consensus 37 p~y~~~~~~~~~~~~~~--~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~ 113 (247)
T PRK15451 37 PGYSNIISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDV 113 (247)
T ss_pred CChHHHHHHHHHHHHHh--CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEE
Confidence 34444444444333322 23567899999999998877654 2799999999999777655443 222 2344
Q ss_pred EeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 325 ~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...+...++++ .+|+|+++.+++++..+ ...++++++|+|||||.|++++.
T Consensus 114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 114 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 55566777764 49999998776665332 25899999999999999999863
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=135.88 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=89.4
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.+.+|||||||-|.++..|+.. +|+|+|+++.++..++ ..|.+.++...+....+++|-...++||+|+|..+++|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 5689999999999999999887 8999999999987665 456666665445455567776666899999999999999
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEECCCCCCHH
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE 384 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~ 384 (572)
+|+..+++.+.+.+||||.+++++ +..++.
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~ST--inrt~k 167 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLST--INRTLK 167 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEec--cccCHH
Confidence 899999999999999999999998 455544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=131.55 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+..+|||||||+|.++..++++ +++|+|+|+.|+..++....... .....+...|...++++ .+|+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 35678999999999998777642 69999999999876654333211 12334555677777765 58999998
Q ss_pred cccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++++.. +...++++++|+|||||.|+++..
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 77555532 236899999999999999999964
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=129.22 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L 332 (572)
.+.+.+.+. ..+..+|||+|||+|.++..+++. +|+|+|+++.++..++...+ ..+.. ..+...|.+.+
T Consensus 34 ~~~~l~~l~----~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 34 RKDTMKRMN----VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMEL 108 (231)
T ss_pred HHHHHHhcC----CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcC
Confidence 344555554 245689999999999998887653 79999999988866554433 23333 33445567788
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
++++++||+|++..+ +|+.++...++.++.|+|||||++++.+. ...+...++..
T Consensus 109 ~~~~~~fD~V~~~~~-l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~~~~~~ 163 (231)
T TIGR02752 109 PFDDNSFDYVTIGFG-LRNVPDYMQVLREMYRVVKPGGKVVCLET-SQPTIPGFKQL 163 (231)
T ss_pred CCCCCCccEEEEecc-cccCCCHHHHHHHHHHHcCcCeEEEEEEC-CCCCChHHHHH
Confidence 888899999998876 45558889999999999999999998864 33344444443
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-13 Score=136.34 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=81.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...+.+.+. ..+..+|||||||+|.++..|+++ +|+|+|+|+.|+.. ++++++. +...|.+.++
T Consensus 18 ~~~ll~~l~----~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~-----a~~~~~~--~~~~d~~~~~- 85 (255)
T PRK14103 18 FYDLLARVG----AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAA-----ARERGVD--ARTGDVRDWK- 85 (255)
T ss_pred HHHHHHhCC----CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHhcCCc--EEEcChhhCC-
Confidence 445555554 245689999999999999888764 79999999988743 4444433 4445666664
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++++||+|+|+.+ +||..++..++++++++|||||++++..
T Consensus 86 ~~~~fD~v~~~~~-l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 PKPDTDVVVSNAA-LQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCCCceEEEEehh-hhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 5689999999877 5566888999999999999999999985
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=126.51 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=105.6
Q ss_pred CEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEEecccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LP-fp~~sFDlI~ss~~l~h 350 (572)
..||++|||||..-.+.... +|+++|.++.|-.-+....+..+..... +..++.+++| ++++|+|.|+|..++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 45899999999766665532 8999999999876665555555544444 5556789999 89999999999988666
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhcCC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGT 430 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aGF 430 (572)
. .|+.+.|.|+.|+|||||.+++-.+ +.....-+...|++..+-. |..... +.. |.. +....+.++.|
T Consensus 158 v-e~~~k~L~e~~rlLRpgG~iifiEH-va~~y~~~n~i~q~v~ep~----~~~~~d--GC~-ltr---d~~e~Leda~f 225 (252)
T KOG4300|consen 158 V-EDPVKQLNEVRRLLRPGGRIIFIEH-VAGEYGFWNRILQQVAEPL----WHLESD--GCV-LTR---DTGELLEDAEF 225 (252)
T ss_pred c-CCHHHHHHHHHHhcCCCcEEEEEec-ccccchHHHHHHHHHhchh----hheecc--ceE-Eeh---hHHHHhhhccc
Confidence 6 8999999999999999999999987 6666555555555443332 333331 111 211 34556667777
Q ss_pred CCCccC
Q 008262 431 IPPLCD 436 (572)
Q Consensus 431 ~~p~cd 436 (572)
+...|.
T Consensus 226 ~~~~~k 231 (252)
T KOG4300|consen 226 SIDSCK 231 (252)
T ss_pred ccchhh
Confidence 766554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=129.27 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=85.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----------CeEEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQA 338 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiSp~dl~~a~~~~A~~rg~~----~~~~~~d~e~LPfp~~s 338 (572)
....++||++||||..+..+++. +|+++|+++.|+.... +.+.++++. ..+...|+|.|||++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 45689999999999888777653 6999999999997665 445445543 34555689999999999
Q ss_pred eeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
||+.++.+.+-.| .++.+.|+|++|+|||||+|.+-.++
T Consensus 178 ~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred ceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 9999998876666 89999999999999999999988753
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.7e-13 Score=137.65 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=81.9
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHH-HHHHHcCCCcEEEeccccCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQI-QFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~-~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
+.+...+. ..++++|||||||+|.++..++.. .|+|+|.|+.|+.+... +..........+...+.+.++..
T Consensus 111 ~~~l~~l~----~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLS----PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcC----CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 34444444 235689999999999988877665 59999999988754321 11111112233444567788764
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+||+|+|..+++|+ .++..+|++++|+|||||.|++.+.
T Consensus 187 -~~FD~V~s~gvL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -CCcCEEEEcchhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999887777 8889999999999999999999874
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=131.73 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-CCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP-fp~~sFDlI~ss~~ 347 (572)
....+|||+|||+|.++..|++. +|+++|+++.|+..++. .+.+.+.. ..+...+.+.++ +.+++||+|+|..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 34579999999999999999887 89999999999876653 33344432 234444555553 66789999999987
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++| ..++..+|.++.|+|||||++++..
T Consensus 122 l~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEW-VADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHh-hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 554 4888999999999999999999875
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=139.46 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+..+|||||||+|.++..|+.. +|+|+|+|+.++..+... +........+...|...+++++++||+|+|..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 45679999999999888877764 799999999887655432 22222234455567778888888999999998877
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .++..+|.+++|+|||||.+++++.
T Consensus 344 h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 344 HI-QDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 77 7889999999999999999999964
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=113.76 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=74.8
Q ss_pred CCEEEEECCCCchhHHHhcc--C--CeEEEeCCccchHHHHHHHHHHcC-CCcEEEeccc-cCCCCCCCCeeEEEecc-c
Q 008262 275 IRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERG-APAMVAAFAT-RRLPYPSQAFDLIHCSR-C 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~d~-e~LPfp~~sFDlI~ss~-~ 347 (572)
..+|||||||+|.++..+++ . +|+|+|+++.++..++........ ....+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 57899999999999999888 3 899999999999777655533222 2334555555 33333 35699999987 4
Q ss_pred ccccc--CChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWT--RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~--~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..++. .+...+++++.+.|+|||+|++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33332 334689999999999999999986
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=127.71 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||||||||.++..|++. +|+|+|+|+.|+..+. ++. . ....+.+.+|+++++||+|+|+.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~-----~~~-~--~~~~d~~~lp~~d~sfD~v~~~~~l~- 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL-----VAD-D--KVVGSFEALPFRDKSFDVVMSSFALH- 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH-----hcc-c--eEEechhhCCCCCCCEEEEEecChhh-
Confidence 3578999999999999888765 7999999999985543 222 1 23457889999999999999998754
Q ss_pred ccCChHHHHHHHHHhccCCe
Q 008262 351 WTRDDGILLLEVNRMLRAGG 370 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG 370 (572)
+..|+..+++|++|+|||.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ccCCHHHHHHHHHHHhcCce
Confidence 45899999999999999953
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=125.33 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..|+++ +|+|+|+|+.++..++.. +...+.. ..+...|...++++ ++||+|+|+.++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 4578999999999999999887 899999999988766543 3344443 23334456666664 67999999977555
Q ss_pred ccC-ChHHHHHHHHHhccCCeEEEEE
Q 008262 351 WTR-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 351 w~~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.. +...++.++.++|||||++++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 432 3469999999999999996654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-12 Score=119.25 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP--fp~~sFDlI~ss 345 (572)
+..+|||+|||+|.++..|++ .+++|+|+++.++..+.. .+.+.+.. ..+...|.++++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 467899999999999999883 279999999999866653 44445555 456666777777 66 899999998
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++ ++..+...+|+++.++|++||.++++..
T Consensus 81 ~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 81 GVL-HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp STG-GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Cch-hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 775 5558888999999999999999999974
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-12 Score=124.58 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..|+++ +|+++|+++.++..+.. .+...++.......+...++++ ++||+|+|+.+++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 3578999999999999999876 89999999998866553 3444555433334455555554 689999998876665
Q ss_pred cC-ChHHHHHHHHHhccCCeEEEEE
Q 008262 352 TR-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 352 ~~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.. +...++++++|+|||||++++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33 3468999999999999996665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-12 Score=127.08 Aligned_cols=103 Identities=23% Similarity=0.281 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++.. +|+++|+++.++..++.. ....+.. ..+...+.+.+++++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35689999999999866544432 699999999988666543 3333443 2344457888899889999999886
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ +|+..+...++.++.|+|||||+|++++.
T Consensus 155 v-~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 V-INLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred c-ccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5 55658888999999999999999999864
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-13 Score=115.70 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=55.9
Q ss_pred EEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CC-CCCCeeEEEecccccccc
Q 008262 279 MDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PY-PSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 279 LDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-Pf-p~~sFDlI~ss~~l~hw~ 352 (572)
||||||+|.++..+++. +++++|+|+.|+..++.+................... .. ..++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999998888765 8999999999995544444432222222222222222 11 22699999999886666
Q ss_pred CChHHHHHHHHHhccCCeEE
Q 008262 353 RDDGILLLEVNRMLRAGGYF 372 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~l 372 (572)
++...++++++++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 89899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=121.48 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=86.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
..+.+.+.+.+. ..+..+|||+|||+|.++..+++. +++++|+++.++..+... .........+...+.+
T Consensus 5 ~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLA----VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccc
Confidence 344555666555 245689999999999998887643 799999999877544432 1111223344455677
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++++++||+|++..++.|+ .++..++.++.++|||||++++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 788888999999999886666 7889999999999999999999863
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=127.08 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=87.0
Q ss_pred eccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC
Q 008262 243 KFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG 319 (572)
Q Consensus 243 ~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg 319 (572)
.|+.+...+...+...++.+.+.+. ..++.+|||||||.|.++..++++ +|+|+++|......++ +.+.++|
T Consensus 35 ~~~~~~~~Le~AQ~~k~~~~~~~~~----l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~g 109 (273)
T PF02353_consen 35 YFDEGDDTLEEAQERKLDLLCEKLG----LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAG 109 (273)
T ss_dssp --SSTT--HHHHHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCST
T ss_pred ecCCchhhHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcC
Confidence 3455555566677778888888776 367899999999999999999987 8999999876553332 4445566
Q ss_pred CCc--EEEeccccCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEE
Q 008262 320 APA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 320 ~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. .+...|..+++ .+||.|+|..++.|... +...+|+++.++|||||.+++.+
T Consensus 110 l~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 110 LEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 543 34444555554 39999999999999853 45799999999999999999875
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=124.65 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=99.6
Q ss_pred eccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC
Q 008262 243 KFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG 319 (572)
Q Consensus 243 ~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg 319 (572)
.|+.+...+...+...++.+++.+. ..++.+|||||||.|.++.+++++ +|+|+++|+.+...++ +.++++|
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~----L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~g 119 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLG----LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARG 119 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcC----CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcC
Confidence 4666655666777778888888877 468899999999999999999887 8999999998775554 4455566
Q ss_pred CC--cEEEeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEECCCCC
Q 008262 320 AP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 320 ~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~P~~~ 381 (572)
.. ..+.. .+.+...+.||-|+|..++.|.... .+.+|..++++|+|||.+++-+.....
T Consensus 120 l~~~v~v~l---~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 120 LEDNVEVRL---QDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred CCcccEEEe---ccccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 65 22322 3333334559999999999998653 479999999999999999998753333
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-11 Score=114.50 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
++.+|||||||+|.++..++. .+|+++|.++.++..++. .++..+.. ..+...+.+.++. .++||+|+|...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 368999999999998887764 289999999998876654 34444554 3344456666766 679999998642
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+...++.+++++|||||.+++..
T Consensus 122 ----~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ----ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 456889999999999999999986
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-11 Score=126.76 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||||||+|.++..+++. +|+++|+++.|+..+..... ..+ ..+...|.+.+++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~--i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKE--CKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccC--CeEEeccHHhCCCCCCceeEEEEcChh
Confidence 34579999999999988777543 79999999988865544322 112 234556788899999999999998876
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++ .+...+|++++|+|||||.+++..+
T Consensus 189 ~~~-~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYW-PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhC-CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 666 7888999999999999999988753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-11 Score=132.04 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--fp~~sFDlI~ss~~ 347 (572)
++.+|||+|||+|.++..++.. +|+|+|+|+.|+..++.+. ...+....+...|...++ +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 4579999999999988777643 8999999999887665432 223333334445667777 78899999999887
Q ss_pred ccccc------------CChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWT------------RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~------------~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++|. .+...+|++++|+|||||.+++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 66653 234689999999999999999986
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-12 Score=109.52 Aligned_cols=92 Identities=29% Similarity=0.534 Sum_probs=69.0
Q ss_pred EEEECCCCchhHHHhcc-------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc-cc
Q 008262 278 VMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC-RI 349 (572)
Q Consensus 278 VLDIGCGtG~~a~~L~~-------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~-l~ 349 (572)
|||+|||+|..+..+.+ ..++++|+++.|+..+..... +.+....+...|...+++.+++||+|+|+.+ +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~-~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS-EDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH-HTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch-hcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999988877763 379999999999866654333 3556666777788889988899999999655 55
Q ss_pred cccCC-hHHHHHHHHHhccCCe
Q 008262 350 NWTRD-DGILLLEVNRMLRAGG 370 (572)
Q Consensus 350 hw~~d-~~~~L~ei~RvLKPGG 370 (572)
|+.++ ...+|+++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 54322 2689999999999998
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-11 Score=123.48 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
..+|||+|||+|.++..|++. +|+|+|+|+.++..++ +.+...++...+...|....++ +++||+|+|+.++++..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 358999999999999998876 8999999998886554 4455556644444445555555 68999999987766553
Q ss_pred C-ChHHHHHHHHHhccCCeEEEEE
Q 008262 353 R-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 353 ~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
. +...+++++.|+|||||++++.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 3468999999999999997765
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-11 Score=120.48 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=112.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc-CC--CcEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GA--PAMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r-g~--~~~~~~~d~e~L 332 (572)
-+++...+++ -.+++|||||||.|+++..|+.+ .|+|+|.++.-. .+-+++++. +. .........+.|
T Consensus 104 W~rl~p~l~~----L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 104 WDRLLPHLPD----LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred HHHHHhhhCC----cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhc
Confidence 3455556653 35789999999999999888876 699999887543 332333322 22 222333467899
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhch-hhhhccCcE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCW-ELVKKEGYI 411 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w-~~v~~~g~i 411 (572)
|. .++||+|+|..++.|- .++-..|.++...|+|||.+++.|.-+.+.... .++- ...++..
T Consensus 178 p~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~-------------~L~P~~rYa~m~-- 240 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLVIDGDENT-------------VLVPEDRYAKMR-- 240 (315)
T ss_pred cc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCce-------------EEccCCcccCCC--
Confidence 87 7899999999998898 888999999999999999999998633332110 0000 0111111
Q ss_pred EEeeccch-hHHHHHHhcCCCCCccCCC------CCCcc--ccCCCHHHHHhh
Q 008262 412 AIWKKPTN-NSCYLNREAGTIPPLCDPD------DNPDN--VWYVDLKACITR 455 (572)
Q Consensus 412 ~iw~kpl~-~~c~ll~~aGF~~p~cd~~------~~~~~--~wY~~l~~~L~~ 455 (572)
-+|--|.. ....+++++||....|-.. ++..+ ..+.|+.+.|.+
T Consensus 241 nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~~SL~dFLDp 293 (315)
T PF08003_consen 241 NVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMDFQSLEDFLDP 293 (315)
T ss_pred ceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcCcccHHHhcCC
Confidence 13444433 4677889999987655211 11122 345666666654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=121.90 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc-----CCCcEEEe
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-----GAPAMVAA 326 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r-----g~~~~~~~ 326 (572)
+....++.+.+.+.... ..+..+|||||||+|.++..|++. +|+|+|+|+.|+..++.+..... .....+..
T Consensus 125 ~~~~~v~~~l~~l~~~~-~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 125 GHAQTVEKVLLWLAEDG-SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 44455566666654210 124579999999999999999876 79999999999976664433210 11223333
Q ss_pred ccccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhh
Q 008262 327 FATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV 405 (572)
Q Consensus 327 ~d~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v 405 (572)
.|.+.+ +++||+|+|..+++|+..+. ..++..+.+ +.+||. +++..|. +.. ...+..+... |.
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~--~~~--~~~l~~~g~~-----~~-- 267 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPK--TLY--YDILKRIGEL-----FP-- 267 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCc--chH--HHHHHHHHhh-----cC--
Confidence 344333 58899999999988885443 345555554 556555 4554332 211 1111111110 11
Q ss_pred hccCcEEEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHH
Q 008262 406 KKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACI 453 (572)
Q Consensus 406 ~~~g~i~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L 453 (572)
........|..+..+...+++++||.+..+. ......+|.-+.+|.
T Consensus 268 g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~--~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 268 GPSKATRAYLHAEADVERALKKAGWKVARRE--MTATQFYFSRLLEAV 313 (315)
T ss_pred CCCcCceeeeCCHHHHHHHHHHCCCEEEEEE--EeecceeHHhhhhhc
Confidence 1111122344455677889999999876544 444555665555553
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.2e-11 Score=116.03 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..|++. +++|+|+|+.++..+ +++.....+...++.. |+++++||+|+|+.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A-----~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKA-----KAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHH-----HhhCCCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 4578999999999988887653 799999999887444 3322222334445555 88899999999999988
Q ss_pred cccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.++ ...+++++.|++ ++++++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 88533 368999999998 56888875
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=101.82 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
...+|||+|||+|.++..++++ +|+++|+++.++..+..... ..+.. ..+...+... ++...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4579999999999999888764 79999999988866654333 33333 2333333333 3333468999998754
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ....+++++.+.|||||+|+++.
T Consensus 98 ~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22 23689999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-11 Score=116.26 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccc-cCCC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~-e~LP--fp~~sFDlI~ss 345 (572)
+..+|||||||+|.++..+++. +|+++|+++.++..+..+.. ..+.. ..+...++ +.++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 4678999999999998887654 79999999998876654333 33433 34455566 6666 778899999987
Q ss_pred cccccccCC--------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d--------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+ .+|... ...+++++.++|||||.|++++.
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 444321 36799999999999999999863
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=109.10 Aligned_cols=113 Identities=17% Similarity=0.214 Sum_probs=81.9
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
+.+.+.+.+. ..+..+|||+|||+|.++..++.. +++++|+++.++..+..... ......+...+...+
T Consensus 27 ~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 27 WRRRAVKLIG----VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHHHHhc----cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence 3444444443 235689999999999998887654 69999999876654433222 111233445567777
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++++||+|+++..+++. .+...+++++.++|+|||.+++.+.
T Consensus 101 ~~~~~~~D~i~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNV-TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCCcEEEEEEeeeeCCc-ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8877899999998775444 7889999999999999999998764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-11 Score=116.87 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=75.4
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
++|||||||+|.++..+++. +|+|+|+++.++..+... ....+.. ..+...|....+++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 36999999999988888653 799999999877555433 2333432 23444455555664 5899999988877
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .+...+|+++.++|||||++++++.
T Consensus 79 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HI-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hC-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76 7789999999999999999999864
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=115.12 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--------fp~~sF 339 (572)
.+..+|||||||+|.++..++++ .|+++|+++ |. . .....+...|+...+ +.+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~-----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----P-----IVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----C-----CCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 45679999999999999888664 699999987 21 0 012334445655542 567899
Q ss_pred eEEEeccccccccCCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~-----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+|+.+ .++..++ ..+|.++.++|||||.|++..+
T Consensus 119 D~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998754 5554332 3589999999999999999864
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=120.05 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+.. ..+....+........+..+++||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999988777654 79999999998876654433 33443222111111234456799999987542
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....++.++.++|||||+|+++..
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2236789999999999999999974
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=112.74 Aligned_cols=101 Identities=19% Similarity=0.338 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..++||+|||.|..+.+|+++ .|+++|.|+..+... .+.|.+.++.......|.+...++ +.||+|+|..++.+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 4579999999999999999998 899999999877654 467777888766666677777765 689999988776666
Q ss_pred cCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
..+. +.++..+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 5544 589999999999999999864
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-11 Score=120.81 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-----E--EEeccccCCCCCCCCeeEEEec
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-----M--VAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-----~--~~~~d~e~LPfp~~sFDlI~ss 345 (572)
+++|||+|||+|.++..|+.. +|+|+|++..|+..+... +....... . +...+.+.+ .+.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence 478999999999999999876 899999999988666544 22111100 1 111122333 3459999999
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+++|. .|+..++..+.+.|||||.+++++
T Consensus 166 evleHV-~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 166 EVLEHV-KDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHH-hCHHHHHHHHHHHhCCCCceEeee
Confidence 999999 899999999999999999999998
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.5e-10 Score=110.05 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
+..+|||+|||+|.++..++. .+++++|+++.++..++....... .....+...+...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 457899999999998877754 379999999988765554333211 11233444566777777789999999877
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++ .+...+|.++.++|+|||.+++.+.
T Consensus 131 l~~~-~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNV-PDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccC-CCHHHHHHHHHHhccCCcEEEEEEe
Confidence 5555 7889999999999999999988764
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-10 Score=107.92 Aligned_cols=105 Identities=21% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
++.+|||+|||+|.++..++.. +|+++|.++.++..+.. .+++.+.. ..+...+.+.++ .+++||+|+|..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 3679999999999888776532 79999999988765443 33444543 344555666664 357999999864
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
+ .+...+++.+.++|||||.+++.. ......++.
T Consensus 118 --~-~~~~~~~~~~~~~LkpgG~lvi~~--~~~~~~~~~ 151 (181)
T TIGR00138 118 --L-ASLNVLLELTLNLLKVGGYFLAYK--GKKYLDEIE 151 (181)
T ss_pred --h-hCHHHHHHHHHHhcCCCCEEEEEc--CCCcHHHHH
Confidence 2 455778999999999999999884 344444433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=123.63 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
..+...++.+.+.+. ..++.+|||||||+|.++..+++. +|+|+|+|+.++..+.... .+....+...|.
T Consensus 150 ~Aq~~k~~~l~~~l~----l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~ 222 (383)
T PRK11705 150 EAQEAKLDLICRKLQ----LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECch
Confidence 344455666666654 246689999999999999888764 7999999998775544322 123333333344
Q ss_pred cCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+ +++||+|+|..+++|... +...+++++.|+|||||++++.+.
T Consensus 223 ~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 223 RDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 443 478999999888777632 346899999999999999999864
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6e-11 Score=115.94 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=88.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...|...++ ....++|.|+|||+|..+..|.++ .|+|+|-|+.|+ ..|+.+.+...+...|+..+.
T Consensus 19 a~dLla~Vp----~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-----a~Aa~rlp~~~f~~aDl~~w~- 88 (257)
T COG4106 19 ARDLLARVP----LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-----AKAAQRLPDATFEEADLRTWK- 88 (257)
T ss_pred HHHHHhhCC----ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-----HHHHHhCCCCceecccHhhcC-
Confidence 445666666 346789999999999999999987 899999999888 445566666667666776665
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++..+|+++++. .+||.+|...+|..+...|.|||.|.+..+
T Consensus 89 p~~~~dllfaNA-vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 89 PEQPTDLLFANA-VLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCCccchhhhhh-hhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 457899999875 599999999999999999999999999953
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=110.38 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~ 329 (572)
+.....+.+.+.+.. ...+..+|||+|||+|.++..++.. .|+|+|+++.++..++.+... .+. ...+...+.
T Consensus 37 ~~~~~~~~~~~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPK--DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECCh
Confidence 344555566666652 0235689999999999999999866 799999999988666544332 232 234444555
Q ss_pred cCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEE
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.++ ++||+|++..+++|+.. +...++.++.+++++++++.++
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5554 78999999888777743 3468899999999988777654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=127.72 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=81.1
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc--CCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR--RLPYP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e--~LPfp 335 (572)
..+.+.+. ..+..+|||||||+|.++..|++. +|+|+|+++.++..+.. .........+...|.. .++++
T Consensus 27 ~~il~~l~----~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLP----PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcC----ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCC
Confidence 44455554 234568999999999999999876 89999999998854422 1111112233344443 57788
Q ss_pred CCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|+.+++|+..+ ...++.+++|+|||||++++...
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8999999999887776433 36899999999999999999753
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-10 Score=110.29 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e 330 (572)
.....+.+.+.+.... ..+..+|||||||+|.++..|++. .|+++|+++.++..++..... .+. ...+...+
T Consensus 45 ~~~~~~~~~~~l~~~~-~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d-- 120 (230)
T PRK07580 45 HQRMRDTVLSWLPADG-DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC--
Confidence 3444555555554310 134578999999999999988765 799999999998776654433 222 22233333
Q ss_pred CCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv 373 (572)
++..+++||+|+|..+++|+..+ ...++.++.+.+++++.+.
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 45556899999999887787432 2578888888776555443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=117.47 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCch----hHHHhcc---------CCeEEEeCCccchHHHHHHHH---HHcCC-----------------
Q 008262 274 HIRVVMDAGCGVAS----FGAYLLP---------RNVITMSIAPKDVHENQIQFA---LERGA----------------- 320 (572)
Q Consensus 274 ~~~~VLDIGCGtG~----~a~~L~~---------~~V~gvDiSp~dl~~a~~~~A---~~rg~----------------- 320 (572)
+..+|||+|||||. ++..|++ .+|+|+|+|+.|+..+....- .-+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45789999999994 4444432 269999999999866653210 00011
Q ss_pred -------CcEEEeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 321 -------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 -------~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+...|....+++.++||+|+|.++++|+... ...++.+++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1234445666777778899999999888877422 2489999999999999999973
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=110.59 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC---CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP---fp~~sFDlI~ss 345 (572)
...+|||||||+|.++..++.+ +|+|+|+++.++..+.... ...++.+ .+...|+..++ +++++||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~-~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKA-NKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHH-HHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4468999999999999888765 7999999998886665433 3344433 34444555443 456799999987
Q ss_pred cccccccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. .+|.... ..++.++.|+|||||.|++.+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 54 5554331 4789999999999999999873
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=112.09 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH------------HcCCCcEEEeccccCCCCC-CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL------------ERGAPAMVAAFATRRLPYP-SQA 338 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~------------~rg~~~~~~~~d~e~LPfp-~~s 338 (572)
+..+|||+|||.|..+..|+++ +|+|+|+|+..+..+..+... .++....+...|...++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 4579999999999999999988 899999999877543211100 0112233445566555532 357
Q ss_pred eeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 339 FDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
||+|+...+++|+..+. ..++..+.++|||||++++.++
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 99999888888885554 5799999999999998766643
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-10 Score=110.31 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
-+.++.++-++++. ++.....-|||||||+|..+..|.+. ..+|+|+|+.|++.+..+.. + ...+.+.+ -+-
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~-e--gdlil~DM-G~G 105 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL-E--GDLILCDM-GEG 105 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh-h--cCeeeeec-CCC
Confidence 34556666666665 22345788999999999999998876 78999999999966653111 1 22334444 389
Q ss_pred CCCCCCCeeEEEeccccccccCCh-------H----HHHHHHHHhccCCeEEEEEECC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDD-------G----ILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~-------~----~~L~ei~RvLKPGG~lv~st~P 378 (572)
+||.+++||.+++.. +++|.-+. . .++..++.+|++|+..++...|
T Consensus 106 lpfrpGtFDg~ISIS-AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 106 LPFRPGTFDGVISIS-AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CCCCCCccceEEEee-eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 999999999999874 47875332 1 5677899999999999999643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-10 Score=120.03 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC----cEEEecccc
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATR 330 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~----~~~~~~d~e 330 (572)
.+.+.+.++. ....+|||+|||+|.++..++++ +|+++|+++.++..++.+... .+.. ..+...|..
T Consensus 217 trllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEcccc
Confidence 3445556652 22368999999999999888765 799999999888666544432 2221 122222321
Q ss_pred CCCCCCCCeeEEEecccccccc--CC--hHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWT--RD--DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~--~d--~~~~L~ei~RvLKPGG~lv~st 376 (572)
. .++.++||+|+|+..+++-. .+ ...++.++.++|||||.|++..
T Consensus 292 ~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 13456899999987754321 11 2478999999999999999985
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-10 Score=110.36 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=73.3
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY 334 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPf 334 (572)
+...+...|+ ....+++||+|||.|.++..|+.+ .++++|+|+..+..+....+ +.+ ..+...+... ..
T Consensus 31 ~~~~l~aaLp----~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~~~~V~~~~~dvp~-~~ 102 (201)
T PF05401_consen 31 YRATLLAALP----RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---GLPHVEWIQADVPE-FW 102 (201)
T ss_dssp HHHHHHHHHT----TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T-SSEEEEES-TTT---
T ss_pred HHHHHHHhcC----ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---CCCCeEEEECcCCC-CC
Confidence 3334444455 356688999999999999999998 89999999876644332222 222 2333433322 25
Q ss_pred CCCCeeEEEeccccccccC--ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~--d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|.+.||+|+++.++..+.+ +...++..+...|+|||.|++.+.
T Consensus 103 P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 103 PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7899999999998666643 235789999999999999999863
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-10 Score=117.85 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=78.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
.+.+.+.++. ....+|||+|||+|.++..++++ +|+++|+++.++..++.... ..++...+...|.. ..
T Consensus 185 t~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~--~~ 257 (342)
T PRK09489 185 SQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVF--SD 257 (342)
T ss_pred HHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEcccc--cc
Confidence 3444555542 22357999999999999888764 79999999998877664443 34454444433332 22
Q ss_pred CCCCeeEEEeccccccccC----ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTR----DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~----d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++.||+|+|+..+++... ....++.++.+.|||||.|++...
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3578999999977544221 236899999999999999999864
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-10 Score=109.68 Aligned_cols=101 Identities=25% Similarity=0.365 Sum_probs=77.6
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-fp 335 (572)
+.|+++++ ++.+|||+|||.|.+..+|.+. ...|+|+++.. +..+.++|++......+ +.|. |+
T Consensus 5 ~~I~~~I~------pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~-----v~~cv~rGv~Viq~Dld-~gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIE------PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDN-----VAACVARGVSVIQGDLD-EGLADFP 72 (193)
T ss_pred HHHHHHcC------CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHH-----HHHHHHcCCCEEECCHH-HhHhhCC
Confidence 44555555 5689999999999999999875 67899887754 46677889886554443 4565 99
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++||.|+++.++.+. .++..+|.|+.|+ |...+++.
T Consensus 73 d~sFD~VIlsqtLQ~~-~~P~~vL~EmlRV---gr~~IVsF 109 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAV-RRPDEVLEEMLRV---GRRAIVSF 109 (193)
T ss_pred CCCccEEehHhHHHhH-hHHHHHHHHHHHh---cCeEEEEe
Confidence 9999999999886555 8889999999777 55676663
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=103.90 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..+..... ..+....+...|.... ..++||+|+++...++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~--~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKG--VRGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEcccccc--cCCcccEEEECCCCCCC
Confidence 3468999999999999988876 69999999998866654443 3344333444444333 24699999998765544
Q ss_pred cCC--------------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRD--------------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d--------------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+ ...++.++.|+|||||.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 221 24679999999999999999863
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=104.80 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEecc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d 328 (572)
...+++.+.+.+..........+|||+|||+|.+...|++. .++|+|.|+..+.-|+ ..|..++..+ .+.+.|
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEee
Confidence 34556666555542212334458999999999999999986 5999999998775443 5677677764 455566
Q ss_pred ccCCCCCCCCeeEEEecccc--ccccCCh-----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 329 TRRLPYPSQAFDLIHCSRCR--INWTRDD-----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l--~hw~~d~-----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
+..-.+..+.||+|+--..+ +.++++. ..++..+.++|+|||+|+|+. +++|..||.+.+
T Consensus 127 I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f 193 (227)
T KOG1271|consen 127 ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEF 193 (227)
T ss_pred ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHH
Confidence 65556778899999865533 2222222 367889999999999999997 899999887754
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=115.57 Aligned_cols=100 Identities=23% Similarity=0.310 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-CCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~-~sFDlI~ss~~l 348 (572)
.++++|||+|||+|.++...+.. .|+|+|+.|..+..++ +.++.+++...........+..+. +.||+|+++-.+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 46799999999999988776654 7999999998775555 455555555311111112222333 599999998542
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. -...+..++.+.|||||++++|..
T Consensus 240 ~----vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 240 E----VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred H----HHHHHHHHHHHHcCCCceEEEEee
Confidence 2 226899999999999999999973
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-10 Score=106.78 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=74.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP 333 (572)
.+.|.+.+... ...+|||+|||+|.++..++.. +|+++|+++.++..++. .+...+.. ..+...|.. -.
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~-n~~~n~~~~v~~~~~d~~-~~ 93 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR-NAERNGLENVEVVQSDLF-EA 93 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH-HHHHTTCTTEEEEESSTT-TT
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHhcCcccccccccccc-cc
Confidence 33445555421 4578999999999999988876 59999999988755543 33444554 333333321 12
Q ss_pred CCCCCeeEEEeccccccccCC-----hHHHHHHHHHhccCCeEEEEEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRD-----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d-----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.++++||+|+|+.- .+...+ ...++.++.+.|||||.|++..
T Consensus 94 ~~~~~fD~Iv~NPP-~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 94 LPDGKFDLIVSNPP-FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CCTTCEEEEEE----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeEEEEccc-hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 34689999999876 333233 2588999999999999997764
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-10 Score=124.89 Aligned_cols=123 Identities=24% Similarity=0.396 Sum_probs=98.0
Q ss_pred CCCCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.+..+.|+|+..|.|.|+++|.+..|..|...|. ..........+||+-..+... +|.++..+++||+||+..++-.+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhh
Confidence 3567899999999999999999998888887775 445556777889887766654 78999888999999999877666
Q ss_pred cCC--hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhh
Q 008262 352 TRD--DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELV 405 (572)
Q Consensus 352 ~~d--~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v 405 (572)
... ...+|.|++|+|||||++++.+. .....++..+++.+.|+..
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~---------~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDT---------VDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEecc---------HHHHHHHHHHHHhCcceEE
Confidence 433 35899999999999999999864 3444566777888888643
|
; GO: 0008168 methyltransferase activity |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=102.43 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~ 329 (572)
.+.....+.+.+. ..+..+|||+|||+|.++..++.+ +|+++|+++.++..++.... ..+... .+...+.
T Consensus 16 ~~~~r~~~~~~l~----~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~ 90 (187)
T PRK08287 16 KEEVRALALSKLE----LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEA 90 (187)
T ss_pred hHHHHHHHHHhcC----CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCc
Confidence 3333444445554 235679999999999998877653 79999999988866554333 333332 2333333
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. .++ .++||+|++.... .....++.++.++|+|||++++..
T Consensus 91 ~-~~~-~~~~D~v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 91 P-IEL-PGKADAIFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred h-hhc-CcCCCEEEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 2 233 3689999987542 234678999999999999999875
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=109.99 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..++.. .|+++|+++.++..+..+. ...++...+. ++..+.+||+|+|+...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCcH--
Confidence 5689999999999988877654 5999999999886665433 3334321111 11122379999987432
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....++.++.++|||||+++++..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2235789999999999999999964
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-09 Score=104.53 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+....+...|... .+++++||+|+|+.....
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4578999999999998887664 7999999998876554333 3334433344444433 245679999999753221
Q ss_pred ccC----------------C----hHHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTR----------------D----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~----------------d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
-.. + ...++.++.++|||||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111 0 2457889999999999999864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=108.85 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHhcc--------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.+..+|||||||+|.++..|++ .+|+|+|+++.|+..++.... ..+. .+...+.+.+++++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-~~~~--~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-RPGV--TFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-cCCC--eEEEEecccccccCCCccEEEE
Confidence 3567899999999998877753 179999999988855443211 1122 2333345667777889999999
Q ss_pred ccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
+.+++|. ++. ..+|+++.|++| |.+++..
T Consensus 136 ~~~lhh~-~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHL-DDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecC-ChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9887776 553 479999999998 5555654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=106.62 Aligned_cols=102 Identities=16% Similarity=0.269 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCC-CCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP-SQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp-~~sFDlI~ss~~l~ 349 (572)
...+|||+|||+|.++..+++. .++++|+++.++..++..... .+. ...+...+...++.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4678999999999998887655 799999999887655543332 333 233444455555543 47899999988755
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+. .++..+|.++.++|+|||.+++++.
T Consensus 124 ~~-~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 HV-PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hC-CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 55 7889999999999999999998863
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-09 Score=105.16 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=73.4
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEecccc
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATR 330 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e 330 (572)
....+.+.+. ..+..+|||||||+|..+..+++ .+|+++|+++.++..++.+. ...+.. ..+...|..
T Consensus 60 ~~~~~~~~l~----~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIE----PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcC----CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcc
Confidence 3445555554 24567999999999998877654 27999999998876655333 334432 234444554
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
......++||+|++.....+. ..++.++|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 433345799999988664433 357889999999998874
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=107.60 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=104.8
Q ss_pred CCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHH--HHHHHcCCCcEEEeccccCC--CCCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQI--QFALERGAPAMVAAFATRRL--PYPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~--~~A~~rg~~~~~~~~d~e~L--Pfp~~sFDlI~ 343 (572)
+..+||+||||.|....-+++. .|.++|.|+..+.-... ++... ...+.+...+...+ |...+++|+|+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-RVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-hhcccceeccchhccCCCCcCccceEE
Confidence 3348999999999877777654 68999999976532211 11111 12233444333333 46789999999
Q ss_pred eccccccccCCh-HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHH
Q 008262 344 CSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSC 422 (572)
Q Consensus 344 ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c 422 (572)
+..++....++. ..++.+++++|||||.+++.+. +...+..++-. -.+.+..++....+++..|-.+..+.-
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY-g~~DlaqlRF~------~~~~i~~nfYVRgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY-GRYDLAQLRFK------KGQCISENFYVRGDGTRAYFFTEEELD 222 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec-ccchHHHHhcc------CCceeecceEEccCCceeeeccHHHHH
Confidence 999888776665 5899999999999999999975 33333333321 122333455667788998999988888
Q ss_pred HHHHhcCCCCC
Q 008262 423 YLNREAGTIPP 433 (572)
Q Consensus 423 ~ll~~aGF~~p 433 (572)
.++.++||...
T Consensus 223 ~~f~~agf~~~ 233 (264)
T KOG2361|consen 223 ELFTKAGFEEV 233 (264)
T ss_pred HHHHhcccchh
Confidence 89999999553
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=113.12 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=77.6
Q ss_pred ccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEE
Q 008262 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA 325 (572)
Q Consensus 249 ~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~ 325 (572)
..|..|...-.+..++.|..+ ..++.+|||+|||+|.++...+.. +|+++|+++..+..++ +.+..+++...+.
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIE 214 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEE
T ss_pred CcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEE
Confidence 445555555444455555443 245689999999999877655443 7999999998775555 4455566655333
Q ss_pred eccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 326 ~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.... .....+.||+|+++-... -...++.++.++|+|||+|++|..
T Consensus 215 v~~~--~~~~~~~~dlvvANI~~~----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 215 VSLS--EDLVEGKFDLVVANILAD----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ESCT--SCTCCS-EEEEEEES-HH----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEe--cccccccCCEEEECCCHH----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 2222 223358999999875422 225788889999999999999975
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=106.63 Aligned_cols=103 Identities=15% Similarity=0.284 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-fp~~sFDlI~ss~~l~ 349 (572)
.+..+|||||||+|.++..+.+. +++++|+++.++..+..... ..+....+...+...++ ..++.||+|+++.++.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 35678999999999998888766 79999999987765543332 22333333334444443 3457999999998866
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|. .+...+|.++.++|+|||.++++..
T Consensus 126 ~~-~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HV-PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cc-CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 66 7888999999999999999999864
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=114.69 Aligned_cols=102 Identities=18% Similarity=0.289 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC--CCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL--PYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~L--Pfp~~sFDlI~ss 345 (572)
.....+||||||+|.++..++.+ .++|+|+++.++..+..+ +...++.+. +...|+..+ .++++++|.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 34568999999999999988865 899999999888766543 445565543 344455443 4788999999987
Q ss_pred cccccccCCh------HHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDD------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~------~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ..|.... ..++.++.|+|+|||.+.+.|
T Consensus 200 FP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 200 FP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 5664332 479999999999999999987
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-09 Score=103.47 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d 328 (572)
....+++.+.+.+. ....+|||+|||+|.++..++.. +++++|+++.++..+.. .+...+.. ..+...+
T Consensus 72 ~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d 145 (251)
T TIGR03534 72 DTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSD 145 (251)
T ss_pred ChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECc
Confidence 44556666666554 23468999999999999888764 79999999988865553 33344444 3344444
Q ss_pred ccCCCCCCCCeeEEEecccccc------ccCC-------------------hHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRIN------WTRD-------------------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~h------w~~d-------------------~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ++++++||+|+|+...+. +..+ ...++.++.++|+|||.+++..
T Consensus 146 ~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 146 WFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 433 456789999998653221 1100 1257889999999999999975
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-10 Score=114.65 Aligned_cols=99 Identities=22% Similarity=0.280 Sum_probs=76.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CCC-CCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RLP-YPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e-~LP-fp~~sFDlI~ss~~l 348 (572)
+..+++||+|||||.++..|... .++|+|+|.+|+ +.|.+++.--...+.+.. -++ ..++.||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl-----~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENML-----AKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHH-----HHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 45899999999999999999887 899999998877 666677653322222222 122 346789999998875
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+ .+.+.++.-+...|+|||.|.||..
T Consensus 199 ~Yl-G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 PYL-GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred Hhh-cchhhHHHHHHHhcCCCceEEEEec
Confidence 544 7889999999999999999999953
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=110.27 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=86.2
Q ss_pred eeccCCCcccccc-HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH
Q 008262 242 FKFPGGGTQFIHG-ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 242 ~~Fpggg~~f~~g-~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~ 316 (572)
+.|-....+|.++ .|.-.+-|++.++. ....+|||+|||.|.++..|++. +++-+|++...+..++.+.+
T Consensus 129 ~~~~t~pGVFS~~~lD~GS~lLl~~l~~----~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~- 203 (300)
T COG2813 129 LTFKTLPGVFSRDKLDKGSRLLLETLPP----DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA- 203 (300)
T ss_pred eEEEeCCCCCcCCCcChHHHHHHHhCCc----cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-
Confidence 3444444455433 23334456666663 23348999999999999999876 78999999877755554433
Q ss_pred HcCCCc-EEEeccccCCCCCCCCeeEEEeccccccccCChH----HHHHHHHHhccCCeEEEEEEC
Q 008262 317 ERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG----ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 317 ~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~----~~L~ei~RvLKPGG~lv~st~ 377 (572)
..++.. .+...+ -..+..+ +||+|+|+.-++.-..-.. +++.+..+.|++||.|++...
T Consensus 204 ~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 204 ANGVENTEVWASN-LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HcCCCccEEEEec-ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 344444 333322 3334444 9999999988654433233 899999999999999999964
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=103.42 Aligned_cols=87 Identities=24% Similarity=0.287 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-C-CCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-L-PYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-L-Pfp~~sFDlI~ss~~l 348 (572)
+..+|||||||+|.++..+++. .++|+|+++.++.. +..++... ...+.+. + ++++++||+|+|+.++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~-----a~~~~~~~--~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLA-----CVARGVNV--IQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHH-----HHHcCCeE--EEEEhhhcccccCCCCcCEEEEhhHh
Confidence 3468999999999999888654 67999999876633 33444432 2334433 4 4778899999999875
Q ss_pred ccccCChHHHHHHHHHhccC
Q 008262 349 INWTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKP 368 (572)
+|. .++..+|+++.|++++
T Consensus 86 ~~~-~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 86 QAT-RNPEEILDEMLRVGRH 104 (194)
T ss_pred HcC-cCHHHHHHHHHHhCCe
Confidence 555 8889999999887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=105.91 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC----------------CcEEEeccccCCCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP 335 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~----------------~~~~~~~d~e~LPfp 335 (572)
+..+|||+|||.|..+..|+++ +|+|+|+|+..+..+. .++++ ...+...|...++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4579999999999999999988 8999999998775432 23332 123344455555432
Q ss_pred -CCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 336 -SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 336 -~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
...||+|+...+++|+..+. ..++..+.++|||||.+++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 25899999888878885544 58999999999999975554
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-09 Score=103.11 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=73.6
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e 330 (572)
.....+.+.+. ..+..+|||||||+|.++..|+.. +|+++|+++.++..++.... ..+.. ..+...|..
T Consensus 63 ~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~-~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK-KLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcc
Confidence 34445555554 246689999999999998776543 79999999988866654333 33443 344444555
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.+.||+|++.....+ ....+.+.|||||.|++..
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 44445688999998754322 2346778999999998863
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-09 Score=107.41 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC-CCCCCCC----eeEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR-LPYPSQA----FDLI 342 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~-LPfp~~s----FDlI 342 (572)
+..+|||+|||+|..+..|++. +|+++|+|+.|+..++.+..... ++.......|+.+ ++++... ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4578999999999988877644 79999999999977766554432 2333333445544 4444332 2344
Q ss_pred EeccccccccC-ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 343 HCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 343 ~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
++..++.++.. +...+|++++++|+|||.|++... .......+..+|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d-~~~~~~~~~~aY 190 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD-LVKDPAVLEAAY 190 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc-CCCCHHHHHHhh
Confidence 44334344422 224799999999999999999854 344444444443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=102.61 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=73.1
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~ 331 (572)
....+.+.+. ..+..+|||||||+|.++..|++. .|+++|+++.++..+.. .+.+.+... .+...|...
T Consensus 65 ~~~~~~~~l~----~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 65 MVAMMTELLE----LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHhC----CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCccc
Confidence 3445555554 246689999999999999888764 39999999988866553 334445433 333445444
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.....+.||+|++..... .+...+.+.|+|||+|++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEE
Confidence 333346899999875432 33456889999999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=98.49 Aligned_cols=113 Identities=17% Similarity=0.062 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~ 329 (572)
.......+.+.+. ..+..+|||+|||+|.++..++. .+|+++|+++.++..++.+. .+.+... .+...|+
T Consensus 25 ~~~v~~~l~~~l~----~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~-~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 25 KREVRLLLISQLR----LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC-DRFGVKNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCeEEEECch
Confidence 3344444555554 24567999999999999887753 27999999998886665433 3344432 3333343
Q ss_pred cC-CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~-LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ++.....+|.|+... ..+...++.++.++|+|||++++...
T Consensus 100 ~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 22 222223467765421 23457899999999999999999863
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-09 Score=107.44 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=67.1
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEE-------eccccCCCCCCCCeeEEEecc
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVA-------AFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-------~~d~e~LPfp~~sFDlI~ss~ 346 (572)
+.++|+|||+|..++.+++. +|+|+|+++.|+ +.+.+.. +...+ ..+...|--.++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL-----~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAML-----KVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHH-----HHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999766777766 899999998877 4554332 22111 112233333489999999998
Q ss_pred ccccccCChHHHHHHHHHhccCCe-EEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGG-YFAWA 375 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG-~lv~s 375 (572)
| +|| -|.+.++++++|+||+.| .+.+-
T Consensus 109 a-~HW-Fdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 A-VHW-FDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred h-HHh-hchHHHHHHHHHHcCCCCCEEEEE
Confidence 8 899 577999999999999877 55444
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=106.84 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++++ +++++|+ +.++..+. +.+.+.+.. ..+...|....+++ .+|+|+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEh
Confidence 45689999999999999888766 6889997 45554333 344444543 23444455555555 369999888
Q ss_pred ccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++|..+. ..+|++++++|||||.+++.+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888885443 5799999999999999999974
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=105.96 Aligned_cols=104 Identities=22% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.++.+|||+|||+|.++..++.. .++|+|+++.|+..+..+. ...+... .+...|...+|+.+++||+|+++....
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 45678999999999887665433 8999999999987665443 3344443 455567888998888999999964221
Q ss_pred c-------ccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 N-------WTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 h-------w~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ...+ ...+|.++.|+|||||++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1 1111 36899999999999999999864
|
This family is found exclusively in the Archaea. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=105.73 Aligned_cols=102 Identities=7% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHh-cc-----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYL-LP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L-~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+++|||||||.|.++..+ +. ..++|+|+++.++..++.......++. ..+...|...++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999977443332 21 169999999988876664443334432 345445554443234789999998
Q ss_pred ccccccc-CChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++++|. .+...+|.++.+.|+|||+|++.+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 778885 567899999999999999999985
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=85.25 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=69.1
Q ss_pred EEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC-CCCCeeEEEecccccccc
Q 008262 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-PSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf-p~~sFDlI~ss~~l~hw~ 352 (572)
++||+|||+|.++..++.. +++++|+++..+..++............+...+...... ..++||+|++..++.++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999888862 899999998766444321111111122233334444432 457899999988755534
Q ss_pred CChHHHHHHHHHhccCCeEEEEE
Q 008262 353 RDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.....++..+.+.|||||.++++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 66689999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-08 Score=94.21 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+..+|||+|||+|.++..++.+ +|+++|+++.++..++.... ..+.. ..+...|... ++.+++||+|+++...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 4578999999999999888766 89999999988765543332 23332 2233333322 3455689999987543
Q ss_pred cccc----------------CC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWT----------------RD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~----------------~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.. .+ ...+++++.++|||||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3211 01 2457999999999999998875
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=96.42 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--------fp~~sF 339 (572)
.++.+|||+|||+|.++..++.+ +|+++|+++.+ ...+ ..+...|..... +++++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~--i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN--VDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC--ceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 45689999999999988777543 59999999853 1112 223333443322 456789
Q ss_pred eEEEecccc---ccccCC-------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCR---INWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l---~hw~~d-------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+|..+. .+|..+ ...+|.++.++|+|||.+++..+
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 999986431 123222 25789999999999999999753
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=100.27 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=58.5
Q ss_pred CCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
+...|-|+|||.+.++..+.+. .|...|+.... ..+...|+..+|+++++.|+++++.++ ..
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSL--MG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSL--MG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----S
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhh--hC
Confidence 4468999999999999888765 79999987531 225566889999999999999986543 34
Q ss_pred CChHHHHHHHHHhccCCeEEEEEE
Q 008262 353 RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+...++.|+.|+|||||.|+|+.
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEEE
Confidence 688999999999999999999996
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-08 Score=95.79 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccC-CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~-~-~~~~~~d~e~-LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..++. .+|+++|+++.++..++.+ +...++ . ..+...+... ++...+.||+|++
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4668999999999998876543 2799999999888655533 333442 2 2333334433 3333468999997
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ..+...++.++.++|||||.+++..
T Consensus 118 ~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 532 2456789999999999999999864
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-08 Score=97.35 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=70.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp 335 (572)
...+.+.+. ..+..+|||+|||+|.++..|+.. +|+++|+++.++..+...+.. .+... .+...+.......
T Consensus 67 ~~~l~~~l~----~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLE----LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-LGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcC----CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH-CCCCceEEEECCcccCCCc
Confidence 344445554 245689999999999988876654 799999998877655543333 34432 3333343221113
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.||+|++.....+ +..++.+.|+|||.+++..
T Consensus 142 ~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 142 YAPFDRILVTAAAPE-------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEE
Confidence 478999998754322 3456789999999999985
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=99.35 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----LPfp~~sFDlI~s 344 (572)
.++.+|||+|||+|.++..|++. .|+++|+++.|+.... +.++++ ........|... .++. ++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 46689999999999999888775 6999999999886544 344433 122233334432 1223 56999996
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ..+ ....++.++.|+|||||.++++.
T Consensus 148 d~~-~p~--~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 148 DVA-QPN--QAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred CCC-Chh--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 422 111 11356899999999999999973
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.4e-09 Score=91.26 Aligned_cols=100 Identities=27% Similarity=0.389 Sum_probs=69.2
Q ss_pred CEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC--CCCCCeeEEEecccc
Q 008262 276 RVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP--YPSQAFDLIHCSRCR 348 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LP--fp~~sFDlI~ss~~l 348 (572)
.+|||+|||+|.++..+++ .+++++|+++..+..+...... .+. ...+...|...+. +++++||+|+++.-.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5799999999988877764 3899999999766444433332 332 3445555655554 678999999998765
Q ss_pred ccccCC-------hHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRD-------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d-------~~~~L~ei~RvLKPGG~lv~st 376 (572)
...... ...+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 533211 2478999999999999999875
|
... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=96.36 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
.+.+++.+...+. ..+..+|||+|||+|.++..++.. .|+++|+++.++..++............+...|..
T Consensus 93 te~l~~~~~~~~~----~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 93 TEELVEWALEALL----LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF 168 (275)
T ss_pred cHHHHHHHHHhcc----ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 3445555543333 235578999999999988888754 79999999988866554433111112233333332
Q ss_pred CCCCCCCCeeEEEeccccccc------c-------------------CChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINW------T-------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw------~-------------------~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ++.+++||+|+|+...+.. . .....++.++.++|||||++++..
T Consensus 169 ~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 169 E-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred C-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 2335799999986432211 0 011367888889999999999974
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-08 Score=98.10 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.....|-|+|||.+.++. ..+ .|+.+|+.+. ...+...|+.++|++++|.|+++++. .-.
T Consensus 179 ~~~~vIaD~GCGEakiA~--~~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CL--SLM 239 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--SERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCL--SLM 239 (325)
T ss_pred cCceEEEecccchhhhhh--ccccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeH--hhh
Confidence 345679999999998875 222 8999988653 22345567899999999999999754 444
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+...++.|++|+||+||.|+++.
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEe
Confidence 5788999999999999999999996
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-07 Score=100.85 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
..+..++.+.+.+. +..+|||+|||+|.++..++.. +|+++|+|+.++..++.+. ...+....+...|.
T Consensus 237 eTE~LVe~aL~~l~------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa-~~~g~rV~fi~gDl 309 (423)
T PRK14966 237 ETEHLVEAVLARLP------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA-ADLGARVEFAHGSW 309 (423)
T ss_pred cHHHHHHHhhhccC------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEEcch
Confidence 44555666555443 2358999999999998877642 7999999999987665443 33444444444454
Q ss_pred cCCCC-CCCCeeEEEecccccccc--------------------CCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLPY-PSQAFDLIHCSRCRINWT--------------------RDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LPf-p~~sFDlI~ss~~l~hw~--------------------~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
....+ ..++||+|+|+...+.-. .+. ..++.++.+.|+|||++++..
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33222 245899999976432110 011 256777788999999998874
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=95.99 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHH------------HHHcCCCcEEEeccccCCCCC---C
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQF------------ALERGAPAMVAAFATRRLPYP---S 336 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~------------A~~rg~~~~~~~~d~e~LPfp---~ 336 (572)
+..+||+.|||.|.-+..|+++ +|+|+|+|+..+.....+. ...++....+...|...++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4579999999999999999988 8999999998775543211 011233445666677777532 2
Q ss_pred CCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 337 QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.||+|+-..+++++.++. ..+.+.+.++|+|||.+++.++
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 5899999888888886665 5899999999999999888753
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=93.49 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred EEEeCCccchHHHHHHHHHHc--C-CCcEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEE
Q 008262 298 ITMSIAPKDVHENQIQFALER--G-APAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 298 ~gvDiSp~dl~~a~~~~A~~r--g-~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~ 374 (572)
+|+|+|+.|+..++.+..... + ....+...|++.+|+++++||+|++..+++++ .|...+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 489999999976653332111 1 12345566889999999999999998775555 8899999999999999999999
Q ss_pred EEC
Q 008262 375 AAQ 377 (572)
Q Consensus 375 st~ 377 (572)
.+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 875
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-08 Score=96.56 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
...++||||+|.|..+..|+.. +|++.++|+.|. ..-+++|.... +..++.-.+..||+|.|.+++- =
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr-----~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLD-R 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMR-----WRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLD-R 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHH-----HHHHhCCCeEE----ehhhhhccCCceEEEeehhhhh-c
Confidence 5678999999999999999876 899999998875 44455776432 2223333356899999998744 4
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.+|..+|+++++.|+|+|.++++.
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4888999999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=96.21 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccC-CCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRR-LPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-----g~~~~~~~~d~e~-LPfp~~sFDlI 342 (572)
.++++||+||||+|.++..+++. +|+++|+++.++..+...+.... .....+...|... +....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45689999999999999988765 69999999988866554333211 1122333344322 33346789999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
++... .++.... ..+++++.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 98643 4442221 477899999999999999864
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=95.05 Aligned_cols=103 Identities=21% Similarity=0.324 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP--fp~~sFDlI~ss 345 (572)
...+|||+|||+|.++..++++ +|++||+.+.+...++...+.. ++. ..+...|...+. ....+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 4789999999999999999887 7999999998876666555442 221 234444555543 334579999998
Q ss_pred cccccccC-----------------ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTR-----------------DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~-----------------d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.-...-.. +.+.+++-+.++|||||++.+...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 75433222 235788889999999999999964
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.8e-08 Score=101.64 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc------C----CCcEEEeccccC------CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------G----APAMVAAFATRR------LPY 334 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r------g----~~~~~~~~d~e~------LPf 334 (572)
+..+|||||||-|.-....... .++|+|++...+.++..+...-+ . ..+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999988655444443 79999999998887776652211 1 223333333321 222
Q ss_pred CCCCeeEEEeccccccccCChH---HHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st~ 377 (572)
....||+|-|-.++|+...... .+|..+.+.|||||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2359999999988777666653 699999999999999999975
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-08 Score=100.07 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~---LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..+++. .|+++|+++.+.. ..++.+..+. .......|+.. +....++||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~-NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRP-NIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcC-CCEEEECCccChhhhhcccCCCCEEEE
Confidence 56689999999999999998875 5999999986542 3334444431 22233334322 2223468999998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
... + .++...++.++.++|||||+|++.
T Consensus 209 Dva--~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA--Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC--C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 743 2 123346777999999999999996
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=93.96 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|... ++++++||+|+|+.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3468999999999999888764 799999999888666543 3444543 2334444321 234568999999732
Q ss_pred ccc----------ccCC--------------hHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RIN----------WTRD--------------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~h----------w~~d--------------~~~~L~ei~RvLKPGG~lv~st 376 (572)
... +..+ ...++.++.++|+|||++++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111 0001 1367889999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-07 Score=94.52 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d 328 (572)
.+..++.+.+.+.. ..+..+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|
T Consensus 98 te~lv~~~l~~~~~---~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 98 TEELVEKALASLIS---QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSN 173 (284)
T ss_pred cHHHHHHHHHHhhh---cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECc
Confidence 44555555444321 122268999999999988888753 799999999888665543 3333443 3343334
Q ss_pred ccCCCCCCCCeeEEEeccccc------------cccC------------ChHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRI------------NWTR------------DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~------------hw~~------------d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... +++.+.||+|+|+.-.+ ++.+ ....++.++.+.|+|||++++..
T Consensus 174 ~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 174 LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 322 34445899999973211 1101 12368899999999999999885
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=100.86 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++...+. .+...+....+...|...++ +..++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~-n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRE-NLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45689999999999988887654 79999999998866653 33444554445555665554 3457899999543
Q ss_pred c-c----------ccccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 C-R----------INWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~-l----------~hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. . ..|.... ..+|.++.++|||||++++++-
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 1 1122121 2689999999999999999973
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=89.61 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~ 337 (572)
+.+.+.+. ..+..+|||||||+|.++..++++ +|+++|+++.++...+..... .....+...|...+++++.
T Consensus 3 ~~i~~~~~----~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 3 DKIVRAAN----LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred HHHHHhcC----CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcccc
Confidence 34444444 234578999999999999999886 899999999877555433321 1123455567788888777
Q ss_pred CeeEEEeccccccccCChHHHHHHHHHh--ccCCeEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGILLLEVNRM--LRAGGYFAWA 375 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~L~ei~Rv--LKPGG~lv~s 375 (572)
.||.|+++.. .+.. ...+..+.+. +.++|.|++.
T Consensus 77 ~~d~vi~n~P-y~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 77 QPYKVVGNLP-YNIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCCEEEECCC-cccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 8999998744 3432 2334433332 4588888777
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.3e-07 Score=90.02 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
.....++.+...+.. .....+|||+|||+|.++..++.. +|+++|+++.++..++.+. ...+. .+...|.
T Consensus 69 ~Te~Lv~~~l~~~~~---~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~~--~~~~~D~ 142 (251)
T TIGR03704 69 RTEFLVDEAAALARP---RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAGG--TVHEGDL 142 (251)
T ss_pred cHHHHHHHHHHhhcc---cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCC--EEEEeec
Confidence 345556655554431 123458999999999998887643 7999999998886655443 33332 2333343
Q ss_pred cC-CCC-CCCCeeEEEecccccccc---------------------CC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RR-LPY-PSQAFDLIHCSRCRINWT---------------------RD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~-LPf-p~~sFDlI~ss~~l~hw~---------------------~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ++- ..+.||+|+++.-.+... .+ ...++..+.++|||||.+++..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 32 221 135799999986432110 01 1267777889999999999986
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=98.04 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC------CCcEEEeccc------cCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG------APAMVAAFAT------RRLPYPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg------~~~~~~~~d~------e~LPfp~~ 337 (572)
.+...+||+|||-|.-+...... .++|+||+...+.+++.++-.-++ ..+.+..+|+ +.+++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 35577999999998655544443 899999998888777654432221 2334444442 34566666
Q ss_pred CeeEEEeccccccccCCh---HHHHHHHHHhccCCeEEEEEEC
Q 008262 338 AFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+||+|-|-+|+|.-.... ..+|.++.+.|||||+|+-+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 799999988854433333 3799999999999999988853
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=91.84 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=68.0
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+|||+|||+|.++..++.. +|+++|+++.++..++.+ +...+.. ..+...|... .+++++||+|+|+.-.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999998888754 799999999988666543 3334442 3334444322 23456899999974211
Q ss_pred c------------ccC--------C----hHHHHHHHHHhccCCeEEEEEE
Q 008262 350 N------------WTR--------D----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 h------------w~~--------d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
. +.+ + ...++.++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 100 1 1367899999999999999975
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=95.25 Aligned_cols=106 Identities=12% Similarity=-0.012 Sum_probs=70.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~L 332 (572)
...+.+.+. ..+..+|||||||+|.++..+++. .|+++|+++.++..++. .+...+... .+...|....
T Consensus 69 ~a~ll~~L~----i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 69 MALFMEWVG----LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHhcC----CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhc
Confidence 344444443 235679999999999999888753 49999999988865553 333445443 3334454444
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+.||+|++..... .....+.+.|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~-------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVD-------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchH-------HhHHHHHHhcCCCCEEEEEe
Confidence 44446899999864322 23345788999999998864
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-07 Score=97.40 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC----CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP----YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP----fp~~sFDlI 342 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++...+.+ +...|... .+...|...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45689999999999888777653 699999999988666543 34455543 34445665554 446789999
Q ss_pred Eecc-c----cccccCC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSR-C----RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~-~----l~hw~~d----------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++.. | .++-.++ ...+|.++.++|||||+++.+|-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9632 1 1111111 24789999999999999999973
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=97.21 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEE--EeccccCCCC--CCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRRLPY--PSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~--~~~d~e~LPf--p~~sFDlI~s 344 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++.....+ +...|....+ ...+....++ ..++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n-~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYEN-LKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH-HHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45689999999999888776653 799999999988666543 3344554322 2233333333 4678999995
Q ss_pred c----cc-cccccCC----------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 S----RC-RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s----~~-l~hw~~d----------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .. .++-.++ ...+|.++.++|||||.|++++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 21 1111111 24799999999999999999974
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-07 Score=92.14 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=73.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~ 331 (572)
.|.+.+...+.. ...+++|||||||+|.++..++.. +|+++|+++.++..++..+.... .....+...|...
T Consensus 52 ~y~~~m~~~l~~---~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 52 AYTRAMMGFLLF---NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 455555433321 235678999999999999887654 79999999987755443332211 1122333344322
Q ss_pred -CCCCCCCeeEEEeccccc-cccC--ChHHHHHHHHHhccCCeEEEEEE
Q 008262 332 -LPYPSQAFDLIHCSRCRI-NWTR--DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 -LPfp~~sFDlI~ss~~l~-hw~~--d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.-..++||+|++...-. .... ....+++++.++|+|||.+++..
T Consensus 129 ~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 129 YIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 222246899999753211 1111 12589999999999999999863
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.4e-07 Score=91.32 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++.....+. ...+... .+...|...++...+.||.|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANI-NRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45688999999999988776542 7999999999886655443 3345443 334445555555556799999632
Q ss_pred c-c--cc----------ccC--------ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 C-R--IN----------WTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~-l--~h----------w~~--------d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
- . -. |.. ....+|.++.++|||||+++.++-
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 0 11 111 112589999999999999999974
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=88.81 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=67.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
.++++||+||||+|.++..++.. +++++|+++.++..+...+....+ ....+...|. +-+....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999988887654 699999999877655443322111 1112222232 11222257899999
Q ss_pred eccccccccCC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
+... .+.... ...+++.+.++|+|||.+++..
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 8643 333222 2578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.9e-07 Score=97.33 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-CCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP-fp~~sFDlI~ss 345 (572)
.++.+|||+|||+|..+.++++. .|+++|+++.++.....+ +...|... .+...|...++ +.+++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n-~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH-AKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 45678999999999877666542 799999999988666543 44456543 34445666665 456789999963
Q ss_pred cc---cccccCCh------------------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RC---RINWTRDD------------------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~---l~hw~~d~------------------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ...+..++ ..+|.++.+.|||||.++++|-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 21 11111111 3568999999999999999973
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-07 Score=98.45 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEec-
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCS- 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss- 345 (572)
.++.+|||+|||+|..+..+++ ..|+++|+++.++..++. .+...|+.. .+...|...++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 3567899999999987766654 279999999999866553 444456543 34444555554 45789999952
Q ss_pred ---ccc-------ccccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 ---RCR-------INWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ---~~l-------~hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
... ..|..+. ..+|.++.++|||||.+++++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 211 1121111 2589999999999999999984
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-06 Score=88.35 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=73.0
Q ss_pred EEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
+|||||||+|..+..++.. +|+++|+|+..+.-+. +.+...++....... ..-+.--.+.||+|+|+.-.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~-~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQ-SDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEe-eecccccCCceeEEEeCCCCCCCc
Confidence 7999999999999888875 7999999998775554 344555543322222 122221234899999987443321
Q ss_pred ----------CCh--------------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 353 ----------RDD--------------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 353 ----------~d~--------------~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
.++ ..++.++.+.|+|||.+++.. +....+++.+.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~--g~~q~~~v~~~ 249 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI--GLTQGEAVKAL 249 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE--CCCcHHHHHHH
Confidence 011 267888999999999999985 55555544443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.3e-07 Score=88.49 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT 329 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~ 329 (572)
.....++.+.+. ..++.+|||||||+|++++.|+.. .|+++|..+.....++..++. .+.. ..+...|.
T Consensus 58 P~~~a~~l~~L~----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg 132 (209)
T PF01135_consen 58 PSMVARMLEALD----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHTT----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-G
T ss_pred HHHHHHHHHHHh----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcch
Confidence 344455556665 357789999999999998877753 589999999766555544443 3443 33444443
Q ss_pred c-CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 R-RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e-~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. .++ ....||.|++..... +.+ ..+.+.||+||++++--
T Consensus 133 ~~g~~-~~apfD~I~v~~a~~----~ip---~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWP-EEAPFDRIIVTAAVP----EIP---EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTG-GG-SEEEEEESSBBS----S-----HHHHHTEEEEEEEEEEE
T ss_pred hhccc-cCCCcCEEEEeeccc----hHH---HHHHHhcCCCcEEEEEE
Confidence 2 232 346899999875532 212 34566799999999874
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=88.09 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=69.3
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccC-CC--CCCCCeeEEEeccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRR-LP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~-LP--fp~~sFDlI~ss~~ 347 (572)
..+||||||.|.+...++.. .++|+|+...-+..+. +.+...++.+. +...|+.. +. ++++++|.|+....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 48999999999998888765 7999999987776554 44445566664 33344444 33 56799999997654
Q ss_pred cccccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..|...- ..+|.++.++|+|||.+.+.|-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5553321 3899999999999999999983
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=97.63 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=66.3
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+|||+|||+|.++..++.. +|+++|+|+.++..+..+. ...++. ..+...|... .++.++||+|+|+...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999998877643 7999999998886665443 333432 2233333211 2345689999996532
Q ss_pred cccc---------------------CCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWT---------------------RDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~---------------------~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
+... .+. ..++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2110 111 246778899999999999874
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-07 Score=91.49 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
...+|||+|||+|.++..++.+ +|+++|+++.++..+ +++.....+...|...+. .+++||+|+++..+.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~A-----r~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIG-----KRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 3468999999999998777543 799999999877443 333223334445555554 346899999988776
Q ss_pred cccCC-------------------hHHHHHHHHHhccCCeEEEEE
Q 008262 350 NWTRD-------------------DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 350 hw~~d-------------------~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.... ....+....++|+|+|.+.+.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 64221 135667778889999977665
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=94.12 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP--fp~~sFDlI~s 344 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...+... .+...|...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE-NAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35678999999999988777653 79999999988765543 344455543 34444555442 33 78999997
Q ss_pred ccccc-----------cccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRI-----------NWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~-----------hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..-.. .|.... ..+|.++.++|||||.++.++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 53111 011111 2579999999999999999873
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-06 Score=78.80 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEe-cc-ccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FA-TRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~-~d-~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+++|||||||+.+..++.. +|+++|-++..+.... +.+...+.++.... .+ -+.|+-.+ +||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECC
Confidence 56789999999999999888722 8999998887664433 33444456654333 22 24444222 799999776
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ...+.+|+.+...|||||.+++..
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 5 455899999999999999999985
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-06 Score=87.71 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc----CCCcEEEeccccC-CC-CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LP-YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~d~e~-LP-fp~~sFDlI 342 (572)
.++++||+||||.|.+++.+++. +|+.+|+++.++..+...+.... .....+...|... +. .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999999999988875 68889999876654443332211 1122333334321 11 235789999
Q ss_pred EeccccccccCC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
++... .++... ...+++.+.++|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98633 333222 1368999999999999998764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-06 Score=89.40 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred ccCCCccccccHH-HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHH--HH-
Q 008262 244 FPGGGTQFIHGAD-QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FA- 315 (572)
Q Consensus 244 Fpggg~~f~~g~~-~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~--~A- 315 (572)
|-.|..++...-+ .|.+.|....- . ....+++||+||||+|..++.+++. +|+++|+++.++..+..- +.
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvhp~m-~-~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVHPIM-S-KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EECCeeccccccHHHHHHHHHHHHH-H-hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 3344445544333 34444443211 1 1245689999999999988888764 799999999877544420 00
Q ss_pred HHc----CCCcEEEeccccC-CCCCCCCeeEEEeccccccccC---C--hHHHHHHHHHhccCCeEEEEEE
Q 008262 316 LER----GAPAMVAAFATRR-LPYPSQAFDLIHCSRCRINWTR---D--DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 316 ~~r----g~~~~~~~~d~e~-LPfp~~sFDlI~ss~~l~hw~~---d--~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+ .....+...|... +.-..+.||+|++... ..... . ...++..+++.|+|||.|+...
T Consensus 199 ~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred hccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 001 1122233333322 3444578999998732 22111 1 1468999999999999998874
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.8e-06 Score=94.11 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHH--HHHHc-----CCCcEEEeccccC-CCCCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FALER-----GAPAMVAAFATRR-LPYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~--~A~~r-----g~~~~~~~~d~e~-LPfp~~sFD 340 (572)
.++++|||||||+|..+..+++. +|+++|+++.+++.++.. +.... .....+...|... +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45689999999999999888754 799999999887554431 11100 1122233334333 333357899
Q ss_pred EEEeccccccccCCh-----HHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~-----~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++... ..+.... ..+++++.++|||||.+++..
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9998743 3332221 368899999999999999875
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=93.89 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEecccc--
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR-- 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e-- 330 (572)
....+.+.+.+. ..+..+|||+|||+|.++..|+.. .|+|+|+++.++..+..+ +...+.. ..+...|..
T Consensus 283 e~l~~~vl~~l~----~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n-~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLD----PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAREN-ARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhc----CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHHcCCCceEEEEeChHHh
Confidence 345555555543 245579999999999999998876 799999999998766543 3344443 334444443
Q ss_pred --CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 --RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 --~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++.+++||+|++...... ....+..+.+ ++|++.++++..
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 23455678999998654222 2345555555 799999999974
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=87.52 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
...++|||||+|.|.++..++++ +++.+|+-. .+ +.+.+ .....+...|.. -++|. +|+|+.+.++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~-----~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VI-----EQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HH-----CCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hh-----hcccc-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 45679999999999999998876 678888732 22 33333 223345555554 55664 9999999999
Q ss_pred ccccCCh-HHHHHHHHHhccCC--eEEEEEEC
Q 008262 349 INWTRDD-GILLLEVNRMLRAG--GYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~-~~~L~ei~RvLKPG--G~lv~st~ 377 (572)
++|.++. ..+|+++++.|+|| |.+++.+.
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9996544 48999999999999 99999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-06 Score=83.76 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-------C---------cEEEeccccCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-------P---------AMVAAFATRRLPY 334 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-------~---------~~~~~~d~e~LPf 334 (572)
....+||+.|||.|.-...|+++ +|+|+|+|+..+..+. .+++. . ..+...|.-.++-
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~----~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF----EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH----HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH----HHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 45578999999999999999988 8999999987654332 22221 1 1233445555543
Q ss_pred CC-CCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 335 PS-QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 335 p~-~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
.. +.||+|+-..+++.+.++. ..+.+.+.++|+|||.+++.
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 22 4799999887777776555 58999999999999995444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=83.26 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc----EEE
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA----MVA 325 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~----~~~ 325 (572)
..+.+++.|.+.++. ...+|||||||||.-+.+++.+ .-.-.|..+..+ ........+.+.++ ...
T Consensus 10 Nk~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~l 83 (204)
T PF06080_consen 10 NKDPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLAL 83 (204)
T ss_pred CHhHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEe
Confidence 344566666666652 2236999999999888777766 233334444321 11223334444332 222
Q ss_pred eccccCCCC------CCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 326 AFATRRLPY------PSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 326 ~~d~e~LPf------p~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.......+. ..++||+|+|.++ +|+.+-. ..+|+.+.++|++||.|++..+
T Consensus 84 Dv~~~~w~~~~~~~~~~~~~D~i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 84 DVSAPPWPWELPAPLSPESFDAIFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ecCCCCCccccccccCCCCcceeeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 222222333 3569999999987 6664443 5899999999999999999964
|
The function of this family is unknown. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=82.53 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEecc-ccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFA-TRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d-~e~LPf 334 (572)
.-.+.+.|. ..+..+|||||||+|+.++.|++. +|+++|..+.....+..+ -...|..+ .+...| ..-+|
T Consensus 61 vA~m~~~L~----~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~-L~~lg~~nV~v~~gDG~~G~~- 134 (209)
T COG2518 61 VARMLQLLE----LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN-LETLGYENVTVRHGDGSKGWP- 134 (209)
T ss_pred HHHHHHHhC----CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH-HHHcCCCceEEEECCcccCCC-
Confidence 344555554 356799999999999999988876 899999888655444333 33445543 233333 23333
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+...||.|+...+.-.. +. .+.+.||+||.+++-.
T Consensus 135 ~~aPyD~I~Vtaaa~~v----P~---~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 135 EEAPYDRIIVTAAAPEV----PE---ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCcCEEEEeeccCCC----CH---HHHHhcccCCEEEEEE
Confidence 23789999987653333 22 2456899999999864
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=85.66 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCEEEEECCCCchhHHHhcc-------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 275 IRVVMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
..+|||+|||+|.++..++. .+|+++|+++.++..++ +......+...|....++ +++||+|+|+.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar-----~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK-----RIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH-----hhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 46899999999999886653 27999999988764443 222223344455555444 568999999876
Q ss_pred ccccc-CC----------hHHHHHHHHHhccCCeEE
Q 008262 348 RINWT-RD----------DGILLLEVNRMLRAGGYF 372 (572)
Q Consensus 348 l~hw~-~d----------~~~~L~ei~RvLKPGG~l 372 (572)
..... .+ ...++..+.|++++|+.+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 54221 11 135788888878888763
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.1e-06 Score=81.90 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=73.3
Q ss_pred cccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC-cEEEec
Q 008262 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAF 327 (572)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~ 327 (572)
+...+...+.+.+.+... ....+|||+|||+|.++..++.+ +|+++|.++..+..+.. .++..+.. ..+...
T Consensus 34 Rp~~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~-Nl~~~~~~~v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV---IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIK-NLATLKAGNARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhh---cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEEc
Confidence 445666666666665421 23578999999999999754332 89999999876654443 33333433 233333
Q ss_pred cccC-CCCCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEEC
Q 008262 328 ATRR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~-LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st~ 377 (572)
|... ++...++||+|++..-... .-...++..+.. .|+|+|.+++...
T Consensus 110 D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 4332 3323457999998865211 112344554444 3799999999853
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-06 Score=87.91 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC-CCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPf-p~~sFDlI~ss~~l~ 349 (572)
+..+|||+|||+|.++..++.. +|+|+|+++.++..+. +.+...++. ..+...|.+.+.. ..+.||+|++..-.-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 3578999999999999999876 7999999999886655 344445553 3444555555432 345799999874411
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....+.++...++|++.+++++.
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEECC
Confidence 112334444555789999999874
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=87.12 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC-C---CCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL-P---YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~L-P---fp~~sFDlI~ 343 (572)
++.+|||+|||+|.++...+.. +|+++|+++.++..+..+.+ ..++. ..+...|+... . -..++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~-~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3578999999999988664432 79999999998866654433 34442 23444444332 1 1246899999
Q ss_pred ecccccccc--------CChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 344 CSRCRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 344 ss~~l~hw~--------~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+..-...-. .+...++..+.++|+|||.|+..+....-+.+++.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~ 351 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQK 351 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHH
Confidence 985432211 112345567889999999999865333344444444
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.1e-06 Score=84.97 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=75.6
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccC-CC--CCCCCeeEEEeccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRR-LP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~-LP--fp~~sFDlI~ss~~ 347 (572)
..+||||||.|.+...++.+ .++||++...-+.++ .+.+.+.++ ...+...|+.. |. +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~-l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA-LKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH-HHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 57999999999999999877 799999988766444 466777788 54454445433 33 35569999997765
Q ss_pred cccccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
..|...- ..+++.+.++|+|||.|.+.|
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6665432 389999999999999999997
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=85.74 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
...++||.|+|.|..+..|+-. .|-.+|..+..+..+.............+.....+.+..+.+.||+|.+--|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 5678999999999999877655 6777777776665444322222222223333456766555679999999999999
Q ss_pred ccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
+.++. -.+|+.+...|+|+|.+++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 96443 599999999999999999985
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.1e-06 Score=82.75 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccC-CC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~-LP-----fp~~sFD 340 (572)
+.++|||||||+|..+..|+. .+|+++|+++..+..++..+ .+.++.. .+...++.. ++ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 468999999999975554433 27999999998775555443 3344432 233333322 22 1246899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++..- ......++.++.+.|||||.+++..
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9997532 1333688999999999999998764
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-06 Score=86.59 Aligned_cols=103 Identities=23% Similarity=0.401 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCc----hhHHHhcc------C---CeEEEeCCccchHHHHHHH------------HHHc------C-C-
Q 008262 274 HIRVVMDAGCGVA----SFGAYLLP------R---NVITMSIAPKDVHENQIQF------------ALER------G-A- 320 (572)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~------~---~V~gvDiSp~dl~~a~~~~------------A~~r------g-~- 320 (572)
..-+|+..||++| +++..|.+ . +|+|+|+++..+..|.... ..++ + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5578999999999 55555555 1 7999999998876654210 0011 0 0
Q ss_pred --------CcEEEeccccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 321 --------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 --------~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
...+...+.-..+.+.+.||+|+|.++++.+..+. ..++..+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11222333333233457899999999999885544 589999999999999999973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-06 Score=95.28 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCCCCCCeeEEEeccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
+++|||+|||+|.++..++.. +|+++|+|+.++..++.+... .++. ..+...|..+ +.-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999999999999988865 699999999988766654443 3443 2344444322 2111468999998653
Q ss_pred cccc----------cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINW----------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw----------~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...- ..+...++..+.++|+|||.+++++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2211 12234678889999999999999863
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=68.87 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=67.0
Q ss_pred EEEECCCCchh--HHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC--CCCCC-CCeeEEEeccccc
Q 008262 278 VMDAGCGVASF--GAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR--LPYPS-QAFDLIHCSRCRI 349 (572)
Q Consensus 278 VLDIGCGtG~~--a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~--LPfp~-~sFDlI~ss~~l~ 349 (572)
+||+|||+|.. ...+... .++++|+++.++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444442 688899998877552222211 2221 1233334443 78876 489999 666666
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6645 78999999999999999999864
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.1e-06 Score=87.82 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCEEEEECCCCc----hhHHHhccC--------CeEEEeCCccchHHHHHHH----H--------HHcCC----------
Q 008262 275 IRVVMDAGCGVA----SFGAYLLPR--------NVITMSIAPKDVHENQIQF----A--------LERGA---------- 320 (572)
Q Consensus 275 ~~~VLDIGCGtG----~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~----A--------~~rg~---------- 320 (572)
.-+|+..||.|| +++..|.+. +|+|+|++...+..++... . .++..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999 455544431 6999999998887665321 0 00000
Q ss_pred ---------CcEEEeccccCCCCC-CCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 321 ---------PAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 321 ---------~~~~~~~d~e~LPfp-~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
...+...+....+++ .+.||+|+|.++++|+..+. ..++..+++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 011222233332333 57899999999988885443 58999999999999999887
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-05 Score=76.68 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.++.+|||.|.|+|.++.+|+.. +|++.|+-+.....|..++... ++. ..+...|....-+++ .||.|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEecccccccccc-ccCEEEEc
Confidence 57899999999999999999842 8999999887665555444432 332 233334554444443 89999954
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ +++-.++..+.++|||||.+++-.+
T Consensus 171 -m-----p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 171 -L-----PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -C-----CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 3 7888999999999999999998863
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=80.66 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=57.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-----CCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-----LPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-----LPfp~~sFDlI~ 343 (572)
.+..+|||+|||||.|+..+++. .|+++|+++.|+.....+. ... .+...+++. ++..-..+|+++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-----~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-----ERVKVLERTNIRYVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-----CCeeEeecCCcccCCHhHcCCCceeeeEEE
Confidence 35679999999999999999876 7999999998775422211 111 111112222 221223677777
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.+ ..|..+.++|+| |.+++-.
T Consensus 149 iS~~---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 149 ISLI---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eehH---------hHHHHHHHHhCc-CeEEEEc
Confidence 6533 258889999999 8776653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-06 Score=82.05 Aligned_cols=101 Identities=18% Similarity=0.380 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH----HcCCC------------------------
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGAP------------------------ 321 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~----~rg~~------------------------ 321 (572)
....+|||||-.|.++..+++. .|+|+||.+..++.|..+... +....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4567999999999998888765 799999999877555432110 00000
Q ss_pred -------------cEEEeccccCCCCCCCCeeEEEecccc----ccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 322 -------------AMVAAFATRRLPYPSQAFDLIHCSRCR----INWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 322 -------------~~~~~~d~e~LPfp~~sFDlI~ss~~l----~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
+.+.. ..+-|.+....||+|.|-... +.|.++. ..+|..+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle-~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLE-SDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEe-cchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 011122345679999986432 3453443 48999999999999999987
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=86.37 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC----CCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~----LPfp~~sFDlI~ss 345 (572)
.+..+|||+|||+|.++..|+.. .|+++|+++.++..++.+ +...+..+ .+...|.+. +++.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n-~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQN-AELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHH-HHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34578999999999999999875 799999999988666543 33344433 344445433 23445689999976
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...... ...++..+. .|+|++.++++.
T Consensus 370 PPr~G~---~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 370 PPRKGC---AAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred cCCCCC---CHHHHHHHH-hcCCCEEEEEcC
Confidence 442111 245666555 489999988885
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.5e-05 Score=79.75 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHhcccc----ccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-
Q 008262 253 HGADQYLDQIAKMVPDI----TWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM- 323 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i----~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~- 323 (572)
.+...|+..+.++|... ...+...++||||||+|.+...|+.+ +++|+|+++..+..++...+...++...
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35678888888776421 11235678999999999766665543 7999999998887776555543133321
Q ss_pred -E-EeccccCC----CCCCCCeeEEEeccccccc
Q 008262 324 -V-AAFATRRL----PYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 324 -~-~~~d~e~L----Pfp~~sFDlI~ss~~l~hw 351 (572)
+ ...+...+ ..+.+.||+|+|+.-++.-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 1 11121121 1246789999999765443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=88.21 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC--CCCCCeeEEEe
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP--YPSQAFDLIHC 344 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LP--fp~~sFDlI~s 344 (572)
+.....+||||||.|.+...++.. .++|+|+...-+..+. ..+.+.++.+... ..+.+.+. ++++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 345678999999999999888876 7999999987654444 3445566665433 23333222 67899999998
Q ss_pred ccccccccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
++. ..|.... ..+|..+.++|||||.+.+.|
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 765 6664422 389999999999999999997
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.7e-06 Score=84.57 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
....+||+|||.|-.+..=-...++|+|++...+ ..++..+.. ..+..|+-.+|+.+.+||.+++..+++|+..
T Consensus 45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~-----~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLL-----GGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred CcceeeecccCCcccCcCCCcceeeecchhhhhc-----cccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 3578999999999554322222578888887644 334433432 3555678999999999999999988888865
Q ss_pred Ch--HHHHHHHHHhccCCeEEEEEE
Q 008262 354 DD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 354 d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ..+++|+.|+|||||..++..
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEE
Confidence 54 489999999999999987764
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.3e-05 Score=76.25 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcE--EEe-cc-ccCCC-CCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAA-FA-TRRLP-YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~--~~~-~d-~e~LP-fp~~sFDlI~ 343 (572)
..++|||||.+.|+.+..|+.. +++++|+++.+...++..+++ .|+... ... .| .+.+. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4689999999999888887764 699999999887666654443 444331 222 12 22222 4568999999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.- +.-.+.+.+|..+.++|||||.+++..
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 53 444555899999999999999999875
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.1e-05 Score=79.10 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
...++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++......... .....+...|...++
T Consensus 15 ~~~~~~iv~~~~----~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 15 DRVVDRIVEYAE----DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD 88 (258)
T ss_pred HHHHHHHHHhcC----CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC
Confidence 345666666654 235688999999999999999886 799999999887555433221 112334455677776
Q ss_pred CCCCCeeEEEeccccccc
Q 008262 334 YPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw 351 (572)
++ .||.|+++.. .++
T Consensus 89 ~~--~~d~Vv~NlP-y~i 103 (258)
T PRK14896 89 LP--EFNKVVSNLP-YQI 103 (258)
T ss_pred ch--hceEEEEcCC-ccc
Confidence 65 4899998855 444
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00023 Score=69.41 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=76.7
Q ss_pred HHHHHHHHHhccccccCCC-CCEEEEECCCCch----hHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccc
Q 008262 256 DQYLDQIAKMVPDITWGHH-IRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFAT 329 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~-~~~VLDIGCGtG~----~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~ 329 (572)
+.+..++.+.+.-...-.. ..+++|||+|.|. ++..+.+.+++-+|-...-. ......+.+.++.+ .+....+
T Consensus 29 ~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~nv~v~~~R~ 107 (184)
T PF02527_consen 29 EIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSNVEVINGRA 107 (184)
T ss_dssp HHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SSEEEEES-H
T ss_pred HHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCCEEEEEeee
Confidence 3444455554432221122 2289999999994 44444455899998876533 12224455667764 3444445
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
+. +....+||+|++..+ .....++.-+.+.|++||.+++.- +....+|+.++
T Consensus 108 E~-~~~~~~fd~v~aRAv-----~~l~~l~~~~~~~l~~~G~~l~~K--G~~~~~El~~~ 159 (184)
T PF02527_consen 108 EE-PEYRESFDVVTARAV-----APLDKLLELARPLLKPGGRLLAYK--GPDAEEELEEA 159 (184)
T ss_dssp HH-TTTTT-EEEEEEESS-----SSHHHHHHHHGGGEEEEEEEEEEE--SS--HHHHHTH
T ss_pred cc-cccCCCccEEEeehh-----cCHHHHHHHHHHhcCCCCEEEEEc--CCChHHHHHHH
Confidence 55 445689999998866 566889999999999999998875 55666665554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=80.50 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=57.4
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++..+...... ....+...|...+++
T Consensus 29 ~i~~~i~~~l~----~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAG----PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcC----CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCH
Confidence 34556666554 245678999999999999999886 899999999888655432211 233455567777776
Q ss_pred CCCCeeEEEecc
Q 008262 335 PSQAFDLIHCSR 346 (572)
Q Consensus 335 p~~sFDlI~ss~ 346 (572)
++-.+|.|+++.
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 543368888774
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.6e-05 Score=83.88 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhccccccCC----CCCEEEEECCCCchhHHHhcc--------CCeEEEeCCccchHHHHHHHHHHcCC--
Q 008262 255 ADQYLDQIAKMVPDITWGH----HIRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGA-- 320 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~----~~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiSp~dl~~a~~~~A~~rg~-- 320 (572)
++.|-+.+.+.|.+..... +...|||||||+|.+....++ .+|++|+-++......+ +.....+.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~ 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCC
Confidence 3445555555554432222 246899999999987643322 28999999886543322 23233443
Q ss_pred CcEEEeccccCCCCCCCCeeEEEeccccccccCC-h-HHHHHHHHHhccCCeEEE
Q 008262 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD-D-GILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 321 ~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~-~~~L~ei~RvLKPGG~lv 373 (572)
...+...+++.+..+ ..+|+|+|-.+ ..+..+ . ...|....|.|||||.++
T Consensus 242 ~V~vi~~d~r~v~lp-ekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 KVTVIHGDMREVELP-EKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TEEEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEeCcccCCCCC-CceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 345566678888766 48999997543 333322 2 578899999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.7e-05 Score=81.36 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-CCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-PYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L-Pfp~~sFDlI~ss~~l~ 349 (572)
...+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.. ..+...|.+.+ +-..+.||+|++..-.-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 3478999999999999988866 7999999998886555 334444543 33444454432 21124699999875532
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ...++..+. .++|++.++++..
T Consensus 312 G~---~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---cHHHHHHHH-hcCCCeEEEEEeC
Confidence 11 134555554 5899999999974
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=83.13 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEE--eccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA--AFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~--~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+.++|||+|||||.++..-++. .|+++|.|... +-..+.++..+....+. ....+++.+|-+..|+|+|-.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5689999999999888766655 89999998743 34446666666655333 23355555557899999986542
Q ss_pred cccc-C-ChHHHHHHHHHhccCCeEEEEE
Q 008262 349 INWT-R-DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~-~-d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.... + -...+|-.=.+-|+|||.++=+
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 2221 1 1245666678999999997533
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.9e-05 Score=77.07 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=67.6
Q ss_pred CCCEEEEECCCCc----hhHHHhccC---------CeEEEeCCccchHHHHHH----HHHHcCCCc--------------
Q 008262 274 HIRVVMDAGCGVA----SFGAYLLPR---------NVITMSIAPKDVHENQIQ----FALERGAPA-------------- 322 (572)
Q Consensus 274 ~~~~VLDIGCGtG----~~a~~L~~~---------~V~gvDiSp~dl~~a~~~----~A~~rg~~~-------------- 322 (572)
..-+|+-.||+|| +++..|.+. +|+|.|++...+..|..- ....++++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4678999999999 444443321 799999999888666531 111122110
Q ss_pred -----------EEEeccccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 323 -----------MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 323 -----------~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
.+...+.-.-++..+.||+|+|.++++.+.... ..++...+..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 111111111121446799999999988885554 48999999999999999987
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.1e-05 Score=89.05 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=71.0
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc--------------CC--CcEEEeccccCCCC
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER--------------GA--PAMVAAFATRRLPY 334 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r--------------g~--~~~~~~~d~e~LPf 334 (572)
..+|||+|||+|.++..++.. +|+++|+++.++..+..+..... .. ...+...|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 468999999999998888754 69999999998876665544311 01 123333343221 2
Q ss_pred CC--CCeeEEEecccccccc---------------------------------CCh----HHHHHHHHHhccCCeEEEEE
Q 008262 335 PS--QAFDLIHCSRCRINWT---------------------------------RDD----GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 335 p~--~sFDlI~ss~~l~hw~---------------------------------~d~----~~~L~ei~RvLKPGG~lv~s 375 (572)
.. ..||+|+|+.-.+.-. .|. ..++.++.++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 3699999986422100 111 36788889999999999988
Q ss_pred ECCCCCCHHHHH
Q 008262 376 AQPVYKHEEAQE 387 (572)
Q Consensus 376 t~P~~~tl~EL~ 387 (572)
. ++..-+.+.
T Consensus 278 i--G~~q~~~v~ 287 (1082)
T PLN02672 278 M--GGRPGQAVC 287 (1082)
T ss_pred E--CccHHHHHH
Confidence 5 444444333
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=77.90 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-C----CCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-Y----PSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LP-f----p~~sFD 340 (572)
+.++|||||||+|..+..++.. .|+++|.++.....+...+ ++.|+. ..+...++ +.|+ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4689999999999988887753 6999999997665554433 344553 22333332 3232 1 136899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+.-. .......++..+.++|+|||.+++..
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 999643 22344789999999999999998874
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=74.57 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ .|+++|+++.++..+...... .....+...|...+++
T Consensus 16 ~i~~~i~~~~~----~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 16 SVIQKIVEAAN----VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHhcC----CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh
Confidence 34556666554 245689999999999999999886 799999999877554432211 1223344556777766
Q ss_pred CCCCee---EEEecc
Q 008262 335 PSQAFD---LIHCSR 346 (572)
Q Consensus 335 p~~sFD---lI~ss~ 346 (572)
+ +|| +|+++.
T Consensus 90 ~--~~d~~~~vvsNl 102 (253)
T TIGR00755 90 P--DFPKQLKVVSNL 102 (253)
T ss_pred h--HcCCcceEEEcC
Confidence 4 566 777664
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.3e-05 Score=74.05 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LP-----fp~~sFD 340 (572)
+.++||+|||++|+.+..|++. +|+++|+++.....++ +..+..|.. ..+...++ +-++ ...+.||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4589999999999888888753 7999999997665444 344444443 22333332 2222 1236899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+.-. ...+...++..+.++|+|||.+++..
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 999653 33344688999999999999999884
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00029 Score=71.85 Aligned_cols=133 Identities=16% Similarity=0.243 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEec--
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF-- 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~-- 327 (572)
..++..+.+.+.+....+ .....+||+|||+|..+..|+.. .|+++|.|+..+.-+. +.++..++...+.+.
T Consensus 129 ETEE~V~~Vid~~~~~~~-~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEH-SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhh-cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEec
Confidence 345666666666653322 23347999999999877766654 8999999987664333 233333332222111
Q ss_pred -----cccCCCCCCCCeeEEEeccccccccCCh--------------------------HHHHHHHHHhccCCeEEEEEE
Q 008262 328 -----ATRRLPYPSQAFDLIHCSRCRINWTRDD--------------------------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 328 -----d~e~LPfp~~sFDlI~ss~~l~hw~~d~--------------------------~~~L~ei~RvLKPGG~lv~st 376 (572)
.....+...+.+|+++|+.-.+.- +|. ..++.-+.|.|+|||.+.+..
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~-dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRK-DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccc-cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 123344567899999998743221 110 145666789999999999986
Q ss_pred CCCCCCHHHHHHHH
Q 008262 377 QPVYKHEEAQEEHW 390 (572)
Q Consensus 377 ~P~~~tl~EL~~~w 390 (572)
. .......+...|
T Consensus 286 ~-~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 286 V-ERKEHSYLVRIW 298 (328)
T ss_pred c-ccccCcHHHHHH
Confidence 3 233334445544
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.7e-05 Score=78.70 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHh--ccCCeEEEeCCccchHHHHHHHHHHcCCCcE-EE-eccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYL--LPRNVITMSIAPKDVHENQIQFALERGAPAM-VA-AFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L--~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~-~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.++..|||==||||.+.... ....++|.|++..|+..+..++..- ++... +. ..|+..+|+++++||.|+|-.-.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y-~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYY-GIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhh-CcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 46679999999999887554 4458999999999887766555433 23322 23 33889999998899999986421
Q ss_pred c-----ccc--CC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 I-----NWT--RD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~-----hw~--~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .-. ++ ...+|..+.++||+||++++..+
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 110 11 24889999999999999999974
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.2e-05 Score=76.51 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc----C----------
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----G---------- 319 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r----g---------- 319 (572)
..+++.|.+.++.........+||-=|||.|.++..++.+ .+.|.|+|..|+-.. ++.... +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 4556666666653222345678999999999999999988 899999999887433 222111 0
Q ss_pred ----------C-----C------------c-EEEeccccCCCCCC---CCeeEEEeccccccccCChHHHHHHHHHhccC
Q 008262 320 ----------A-----P------------A-MVAAFATRRLPYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 320 ----------~-----~------------~-~~~~~d~e~LPfp~---~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKP 368 (572)
+ + . ....+|...+-.++ ++||.|++. .++.-..+.-.+|..|.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHHHHHHHHHHHHhcc
Confidence 0 0 0 00111111111123 699999977 4466667778999999999999
Q ss_pred CeEEEEEEC
Q 008262 369 GGYFAWAAQ 377 (572)
Q Consensus 369 GG~lv~st~ 377 (572)
||+++=..+
T Consensus 195 gG~WIN~GP 203 (270)
T PF07942_consen 195 GGYWINFGP 203 (270)
T ss_pred CCEEEecCC
Confidence 998766654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00019 Score=74.40 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=77.9
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC---------CCcEE
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG---------APAMV 324 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg---------~~~~~ 324 (572)
.-.+++.+++.+.++ .+++||-||-|.|.+++.+++. +++.+|+.+..+ +.+++.- ....+
T Consensus 61 ~yhEml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-----~~ar~~l~~~~~~~~dpRv~i 134 (282)
T COG0421 61 IYHEMLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-----ELARKYLPEPSGGADDPRVEI 134 (282)
T ss_pred HHHHHHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-----HHHHHhccCcccccCCCceEE
Confidence 334444455543333 3479999999999999999886 789999988655 4443321 11112
Q ss_pred Eecc-ccCCCCCCCCeeEEEeccccccccCC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 008262 325 AAFA-TRRLPYPSQAFDLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 325 ~~~d-~e~LPfp~~sFDlI~ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~ 393 (572)
...| .+-+.-..++||+|++... -...+. ...+++.++|+|+++|.++..+...+...+++...+..+
T Consensus 135 ~i~Dg~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~ 207 (282)
T COG0421 135 IIDDGVEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNV 207 (282)
T ss_pred EeccHHHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH
Confidence 2222 2223323348999997632 331110 158999999999999999998432222334444444333
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=70.98 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=58.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCC--C-CCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRL--P-YPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~L--P-fp~~sFD 340 (572)
..+.+|||||||+|..+..++.. .|+..|..+ -+ +.....+...+ ....+...+= +.+ . ...+.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 46689999999999666555443 899999887 33 22222332222 1112222110 111 1 2346899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+++.++. .....+.++.-+.++|+++|.++++..
T Consensus 122 ~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999998844 435567899999999999999888753
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=67.61 Aligned_cols=102 Identities=20% Similarity=0.140 Sum_probs=64.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCch-hHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVAS-FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~-~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.+.|.+.++ ..+..++||||||+|. ++..|.+. +|+++|+++..+ +.+++.+.... ..|...-.+.
T Consensus 5 ~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~~~~~~~v--~dDlf~p~~~ 73 (134)
T PRK04148 5 AEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAV-----EKAKKLGLNAF--VDDLFNPNLE 73 (134)
T ss_pred HHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhCCeEE--ECcCCCCCHH
Confidence 344555554 2345789999999995 88888876 899999998643 55666655433 2333332221
Q ss_pred -CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 -SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 -~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-+.+|+|.+.+. ..+....+.++.+.+ |.-+++...
T Consensus 74 ~y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 74 IYKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred HHhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 367999998765 233355666666544 555666643
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00047 Score=73.30 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc----CCCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
..+++||.||+|.|..++++++. +|+.+|+++..+..+...+.... .....+...|. .-+.-..++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35689999999999999887764 68999999977644433222110 11222333332 22333457899999
Q ss_pred eccccccccCC------hHHHHH-HHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRD------DGILLL-EVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d------~~~~L~-ei~RvLKPGG~lv~st 376 (572)
+. +...+... ...+++ .+.+.|+|||.+++..
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 76 32322111 136777 8999999999998764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00041 Score=70.63 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-c-EEEeccccCCCCC---CCCeeE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-A-MVAAFATRRLPYP---SQAFDL 341 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~-~~~~~d~e~LPfp---~~sFDl 341 (572)
..++.+|||.|.|+|+++..|+.. .|+..|+.+.....++.++.. .++. + .+...|...-.|. ++.||.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccE
Confidence 367899999999999999888853 799999988777666655544 3443 2 3334454333332 368999
Q ss_pred EEeccccccccCChHHHHHHHHHhc-cCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRML-RAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvL-KPGG~lv~st~ 377 (572)
|+.- + +++-.++..+.++| |+||.++.-.+
T Consensus 117 vfLD-l-----p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 117 VFLD-L-----PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEE-S-----SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEe-C-----CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 9854 3 67778999999999 99999988764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=76.43 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=59.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LP 333 (572)
.+++.+.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+...++... .....+...|....+
T Consensus 23 ~i~~~Iv~~~~----~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAA----IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcC----CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 45566666554 245678999999999999999876 79999999988866654443321 112334445555444
Q ss_pred CCCCCeeEEEeccccccc
Q 008262 334 YPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw 351 (572)
+ ..||.|+++.. .++
T Consensus 99 ~--~~~d~VvaNlP-Y~I 113 (294)
T PTZ00338 99 F--PYFDVCVANVP-YQI 113 (294)
T ss_pred c--cccCEEEecCC-ccc
Confidence 4 36899998743 444
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=68.31 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=89.5
Q ss_pred CCCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCCCcE--EEeccc---cCCCCCCCCee
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAM--VAAFAT---RRLPYPSQAFD 340 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~~~~--~~~~d~---e~LPfp~~sFD 340 (572)
.+..-+||||.||.|......++. +|.-.|+++..+...+ +.++++|+... +...|+ +.+.--+-..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 356678999999999654443332 6888899998775444 66778887653 443332 22221234568
Q ss_pred EEEeccccccccCCh---HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeecc
Q 008262 341 LIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKP 417 (572)
Q Consensus 341 lI~ss~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kp 417 (572)
+++.+....-+ +|- ...|..+.++|.|||+++.+..|-...++-+.... ........|. .-.++
T Consensus 212 l~iVsGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~L---tsHr~g~~Wv---------MRrRs 278 (311)
T PF12147_consen 212 LAIVSGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVL---TSHRDGKAWV---------MRRRS 278 (311)
T ss_pred EEEEecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHH---hcccCCCceE---------EEecC
Confidence 99988775555 553 36799999999999999999754333333222211 0000001121 12333
Q ss_pred chhHHHHHHhcCCCC
Q 008262 418 TNNSCYLNREAGTIP 432 (572)
Q Consensus 418 l~~~c~ll~~aGF~~ 432 (572)
-.++-.+..++||.-
T Consensus 279 q~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 279 QAEMDQLVEAAGFEK 293 (311)
T ss_pred HHHHHHHHHHcCCch
Confidence 345667888999964
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00079 Score=65.79 Aligned_cols=116 Identities=12% Similarity=-0.045 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~ 329 (572)
.+...+.+...+... -...+|||++||+|.++..++.+ .|+++|.++..+...+.+ +...+.. ..+...|.
T Consensus 33 ~~~vrea~f~~l~~~---~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N-~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 33 TRVVRELFFNILRPE---IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKEN-LALLKSGEQAEVVRNSA 108 (189)
T ss_pred hHHHHHHHHHHHHHh---cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHhCCcccEEEEehhH
Confidence 344445555555422 24578999999999999998876 699999998766544433 3333332 23444444
Q ss_pred -cCCC-C--CCCCeeEEEeccccccccCChHHHHHHHH--HhccCCeEEEEEE
Q 008262 330 -RRLP-Y--PSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 376 (572)
Q Consensus 330 -e~LP-f--p~~sFDlI~ss~~l~hw~~d~~~~L~ei~--RvLKPGG~lv~st 376 (572)
+.+. + ....||+|+...-.. . .....++..+. .+|+++|.+++..
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~-~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFF-N-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCC-C-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2222 1 122478888754422 1 22244444443 4789999888874
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00054 Score=66.65 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCEEEEECCCCchhHH--HhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGA--YLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~--~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+++|+|+|||||.++. .++.. .|+++|+.+..+..+. +.+.+.+....+...|..+. ...||.++.+.-+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 56789999999997654 44443 8999999998774443 44444444445555555554 467899998877665
Q ss_pred ccCCh-HHHHHHHHHhc
Q 008262 351 WTRDD-GILLLEVNRML 366 (572)
Q Consensus 351 w~~d~-~~~L~ei~RvL 366 (572)
|.... ..+|..+.++-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 54433 24555444443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=77.73 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=66.5
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEeccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
..+|||++||+|.++..++.. .|+++|+++..+..++. .++..++... +...|...+-...+.||+|++...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 358999999999999888643 69999999987754443 3333444432 444454443211467999997632
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+..++..+.+.+++||+++++.
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 334578888788999999999994
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=8.8e-05 Score=79.45 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+...++|+|||.|....++.. .+++|+|.++..+......... .++. ..+...+.-..||+++.||.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 445799999999977766654 3899999988765444332221 1111 123444677889999999999999887
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.|. ++...++.|++|+++|||+++...
T Consensus 189 ~~~-~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 189 CHA-PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ccC-CcHHHHHHHHhcccCCCceEEeHH
Confidence 777 888999999999999999997763
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=4.7e-05 Score=74.61 Aligned_cols=120 Identities=20% Similarity=0.298 Sum_probs=80.3
Q ss_pred ccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC
Q 008262 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP 321 (572)
Q Consensus 244 Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~ 321 (572)
|-|.|.||.-..++..+.|.---+ .++..+.++||+|+|.|..+..++.. +|.+.++|..|. ...+.++..
T Consensus 84 ~lgrGsMFifSe~QF~klL~i~~p--~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr-----~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRKLLVIGGP--AWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMR-----DRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHHHHHHhcCCC--ccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHH-----HHHhhcCCc
Confidence 445556654445554444332223 23566789999999999999999887 788888877665 333344433
Q ss_pred cEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccC-CeEEEEE
Q 008262 322 AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRA-GGYFAWA 375 (572)
Q Consensus 322 ~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKP-GG~lv~s 375 (572)
..- . .+.--.+-.||+|.|.++ +.-+.++..+|++++.+|+| .|..+++
T Consensus 157 Vl~-~---~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLT-E---IEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eee-e---hhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 211 1 111112346999999876 55557889999999999999 8998887
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=73.02 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCchhHHHhc-cC--CeEEEeCCccchHHHHH--------------HHH-HHcCC--------------
Q 008262 273 HHIRVVMDAGCGVASFGAYLL-PR--NVITMSIAPKDVHENQI--------------QFA-LERGA-------------- 320 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~-~~--~V~gvDiSp~dl~~a~~--------------~~A-~~rg~-------------- 320 (572)
.++.++||||||.-..-..-+ +. +|+..|.++....+-.. +.. ...|.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 346789999999965432222 22 79999998876643221 111 00010
Q ss_pred CcEEEeccccC-CCCCC-----CCeeEEEeccccccccCChH---HHHHHHHHhccCCeEEEEEE
Q 008262 321 PAMVAAFATRR-LPYPS-----QAFDLIHCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 ~~~~~~~d~e~-LPfp~-----~sFDlI~ss~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st 376 (572)
...+...|... -|+.. ..||+|++..|+...+.+.. .+++++.++|||||+|++..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01122234333 23332 35999999999999888874 88999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00044 Score=65.91 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
....++.++..+. ..++.-|||+|.|||.++..++.+ .+++++.++.-.+ ...++.....+..+|+
T Consensus 33 Ss~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~-----~L~~~~p~~~ii~gda 103 (194)
T COG3963 33 SSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVC-----HLNQLYPGVNIINGDA 103 (194)
T ss_pred cHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHH-----HHHHhCCCccccccch
Confidence 3445566666655 245678999999999999999887 6889988885432 2222322222444444
Q ss_pred cCCC-----CCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLP-----YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LP-----fp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
..+. +.+..||.|+|..-+..+.... -.+|+++...|++||-++--+
T Consensus 104 ~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 104 FDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4443 5677899999976655553333 388999999999999998765
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00094 Score=74.04 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEE--
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIH-- 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LP-fp~~sFDlI~-- 343 (572)
.++.+|||++||.|.=+.++++. .|++.|+++.-+...+ +.+...|+.+. +...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46789999999999766555443 6999999987664433 33344566553 3334544443 3346799999
Q ss_pred --eccccccccCCh------------------HHHHHHHHHhccCCeEEEEEE
Q 008262 344 --CSRCRINWTRDD------------------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 --ss~~l~hw~~d~------------------~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.. -.+..++ ..+|..+.+.|||||+++.+|
T Consensus 191 aPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 6532 1122222 378889999999999999997
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00033 Score=71.36 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEecc-ccCCCC------CCCCe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLPY------PSQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d-~e~LPf------p~~sF 339 (572)
+.++||+||+++|.-+..|+.. +|+++|..+.....+...+ .+.|+.. .+...+ .+.|+- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4578999999999877777643 7999999986654444333 3344332 222222 233331 13689
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|+.- +.......++..+.+.|+|||.+++-.
T Consensus 158 D~iFiD----adK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 158 DFIFVD----ADKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cEEEec----CCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999964 333344688889999999999998863
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=67.22 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHH---HHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQI---QFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~---~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.++++||=||.|.|..++.+++. +|+-||+.+..+..+.. ..+..- .....+.. ... .-..++||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcC
Confidence 56799999999999999999987 79999999876633322 111101 11111111 111 11236899999763
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ....+++.++|+|+|||.++...
T Consensus 148 ~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C------CChHHHHHHHHhcCCCcEEEECC
Confidence 2 34788899999999999999975
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00044 Score=68.15 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCCCEEEEECCCCchhHHHhc----cC--CeEEEeCCccchHHHHHHHHH-----------HcCCCcEEEeccccCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLL----PR--NVITMSIAPKDVHENQIQFAL-----------ERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~----~~--~V~gvDiSp~dl~~a~~~~A~-----------~rg~~~~~~~~d~e~LPfp 335 (572)
.++.+.||+|.|+|+++..++ .. .++|+|.-+..+..+....-+ +++ ...+++.|....--+
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~-~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG-ELSIVVGDGRKGYAE 159 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC-ceEEEeCCccccCCc
Confidence 467889999999998876554 22 348998877554333222111 111 223445555555556
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...||.|||... .....+++...|++||.+++--
T Consensus 160 ~a~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 788999998633 2456677788999999998863
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0017 Score=62.74 Aligned_cols=111 Identities=17% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
....+||||||+|..+..|+.. -..++|++|..+ ++..+.|+..+........|... ....++.|+++-+.-.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCc
Confidence 3577999999999988888776 367889999755 44445565554432222222111 1223788888766532
Q ss_pred cc--------------cc--CCh----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 349 IN--------------WT--RDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 349 ~h--------------w~--~d~----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
.. |. .+. .+++.++..+|.|.|.|++... ..+..+|+-
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~-~~N~p~ei~ 178 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL-RANKPKEIL 178 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh-hhcCHHHHH
Confidence 21 32 222 2677788899999999999864 334444433
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00044 Score=72.88 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
.....+|+|.|.|..+..++.. +|-++++....+.+++.+.+ .|+.....+ ..+++|-. |+|++-.+++||
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gd-mfq~~P~~----daI~mkWiLhdw 249 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGD-MFQDTPKG----DAIWMKWILHDW 249 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccc-ccccCCCc----CeEEEEeecccC
Confidence 3578999999999999888776 67777776655544433333 333332222 23445533 599999999999
Q ss_pred cCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++. ..+|++|+..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 6544 5999999999999999999864
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00089 Score=73.30 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=78.3
Q ss_pred EEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 277 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
++|-+|||.-.+...+.+. .|+.+|+|+..+.......++++. ...+...|+..+.|++++||+|+--..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~-~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERP-EMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCc-ceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888775 899999999877555544443322 223445578999999999999999888777766
Q ss_pred ChH---------HHHHHHHHhccCCeEEEEEEC
Q 008262 354 DDG---------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 354 d~~---------~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. ..+.++.|+|++||.++..+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 543 457999999999999887764
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=62.62 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=63.7
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR- 331 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~- 331 (572)
+.++.+...-+ ..+...+|||+||++|.|+..++++ .|+|+|+.+.... .....+.. .......+.
T Consensus 9 L~ei~~~~~~~-~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~~~~i~~d~~~~~~~~~i 81 (181)
T PF01728_consen 9 LYEIDEKFKIF-KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QNVSFIQGDITNPENIKDI 81 (181)
T ss_dssp HHHHHHTTSSS--TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEBTTGGGEEEEHSHHG
T ss_pred HHHHHHHCCCC-CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cceeeeecccchhhHHHhh
Confidence 44444444422 1225689999999999999999876 6999999885210 00000000 000000111
Q ss_pred ---CCCCCCCeeEEEecccccccc----CCh-------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 332 ---LPYPSQAFDLIHCSRCRINWT----RDD-------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 332 ---LPfp~~sFDlI~ss~~l~hw~----~d~-------~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
++-..+.||+|+|-.+ .... .|. ...+.-+.+.|||||.|++..+-.... .++..
T Consensus 82 ~~~~~~~~~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~~~~~ 150 (181)
T PF01728_consen 82 RKLLPESGEKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-EELIY 150 (181)
T ss_dssp GGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-HHHHH
T ss_pred hhhccccccCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-HHHHH
Confidence 1112268999998752 2221 122 144455567899999999987643333 34443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=65.77 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc--C--CeEEEeCCccchHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~--~--~V~gvDiSp~dl~~a~~~~ 314 (572)
|=.|.+.-...+|..+...-..++.+.+. ++.+|||+-||.|.|+..++. + .|+++|++|..+... .+.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~N 144 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KEN 144 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HHH
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HHH
Confidence 33444444445555554444456665543 568999999999999988887 3 699999999766433 344
Q ss_pred HHHcCCCc--EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEE
Q 008262 315 ALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 315 A~~rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv 373 (572)
++..++.. .....|...+.- .+.||-|++... .....+|..+.+++|+||.+-
T Consensus 145 i~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 44445543 234456665544 789999997642 233568889999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00032 Score=70.07 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc----CC---CcEEEeccccCC--CCCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER----GA---PAMVAAFATRRL--PYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r----g~---~~~~~~~d~e~L--Pfp~~sFD 340 (572)
+.+.+|||.-.|-|+++...+++ .|+.++.++.-+ +.|.-+ ++ ...+...|+.++ .|.|.+||
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 46789999999999999888776 788888888655 333222 11 112333344332 37899999
Q ss_pred EEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+-..-.+...... ..+..|++|+|||||.++-.+
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 998654333332333 589999999999999987653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00084 Score=64.99 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc--C--C---------eEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP--R--N---------VITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~--~--~---------V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~ 337 (572)
.+...+||-=||+|++..+.+. . . ++|.|+++.++..+..+ +...+.. ..+...|...+++.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccC
Confidence 4567899999999988754322 2 3 67999999988766544 3444543 2455557888998788
Q ss_pred CeeEEEeccccccccCCh-------HHHHHHHHHhccCCeEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDD-------GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~-------~~~L~ei~RvLKPGG~lv~s 375 (572)
++|.|+++.-.-.-.... ..++.++.|+|++...++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999986432211111 26789999999994444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=66.10 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCCCCCCC-CeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQ-AFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~LPfp~~-sFDlI 342 (572)
.++++||-||-|.|..++.+++. +|+.+|+++..+.-+..-+..... ....+...|. .-+.-..+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46799999999999999999875 699999999766444332222111 1223333332 11222234 89999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
+.-.. ....... ..+++.+.++|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 97543 2221221 489999999999999999875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.002 Score=66.62 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc---C--CeEEEeCCccchHHHHHHHHHHcC-CCcE--EEecc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---R--NVITMSIAPKDVHENQIQFALERG-APAM--VAAFA 328 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~---~--~V~gvDiSp~dl~~a~~~~A~~rg-~~~~--~~~~d 328 (572)
..+.++...+++ -.+++|||+|||+|.......+ . +++++|.|+.|+.-+.. ...... .... ....-
T Consensus 20 ~vl~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~-l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 20 RVLSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR-LLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH-HHhcccccccchhhhhhh
Confidence 445566666553 3568999999999965444332 2 79999999988754332 222111 1110 00001
Q ss_pred ccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+.+++. ..|+|++++++..+.... ..+++.+-+.+.+ +|++.++
T Consensus 95 ~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 95 RDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 1223333 239999999988875421 2555555555554 8888864
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0018 Score=64.43 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=59.7
Q ss_pred CCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC---CCCCeeEEEecccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY---PSQAFDLIHCSRCRIN 350 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf---p~~sFDlI~ss~~l~h 350 (572)
.-++|||||=+......-... +|+.||+.+.. +. +...|.-..|. +++.||+|.|+.+ +.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~--------------~~-I~qqDFm~rplp~~~~e~FdvIs~SLV-LN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH--------------PG-ILQQDFMERPLPKNESEKFDVISLSLV-LN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC--------------CC-ceeeccccCCCCCCcccceeEEEEEEE-Ee
Confidence 368999998855433222222 79999998742 11 22223333333 4679999999966 66
Q ss_pred ccCCh---HHHHHHHHHhccCCeE-----EEEEE
Q 008262 351 WTRDD---GILLLEVNRMLRAGGY-----FAWAA 376 (572)
Q Consensus 351 w~~d~---~~~L~ei~RvLKPGG~-----lv~st 376 (572)
+.+++ ..+++.+++.|+|+|. |++..
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 66877 3899999999999999 88875
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0038 Score=65.98 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcCCCcEE--Eeccc----cCCCC--CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPAMV--AAFAT----RRLPY--PSQ 337 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~--~~~d~----e~LPf--p~~ 337 (572)
+...++|+|||.|.=+..|++. .++++|+|...+..+..+..........+ ..++. ..++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3468999999999654444332 58999999988877665555222221211 11121 22321 123
Q ss_pred CeeEEEeccccccccCCh--HHHHHHHHH-hccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 338 AFDLIHCSRCRINWTRDD--GILLLEVNR-MLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~--~~~L~ei~R-vLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
...+|+.-...+.-.+.. ..+|+++.+ .|+|||.|++..- .......+..+|
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D-~~k~~~~l~~AY 210 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD-GCKDPDKVLRAY 210 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC-CCCCHHHHHHHh
Confidence 467777655444332333 388999999 9999999999842 333344444444
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0069 Score=59.95 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
+...+.+|.+...- -.++.+|+|||+-.|+|++.++++ .|+++|+-|..... + ..+...|.
T Consensus 29 Aa~KL~el~~k~~i---~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq~d~ 94 (205)
T COG0293 29 AAYKLLELNEKFKL---FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQGDI 94 (205)
T ss_pred HHHHHHHHHHhcCe---ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEeeec
Confidence 33445555555432 256789999999999999988776 49999999865421 1 22333332
Q ss_pred cCCC--------CCCCCeeEEEeccc---cccccCChH-------HHHHHHHHhccCCeEEEEEECCCCC
Q 008262 330 RRLP--------YPSQAFDLIHCSRC---RINWTRDDG-------ILLLEVNRMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 330 e~LP--------fp~~sFDlI~ss~~---l~hw~~d~~-------~~L~ei~RvLKPGG~lv~st~P~~~ 381 (572)
..-+ +....+|+|+|-.. ..++..|.. .++.-+.++|+|||.|++..+-+..
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 2211 23445799997542 234433432 5566677899999999999763333
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.01 Score=63.03 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.++.++|||||++|.|+..|+++ .|++||..+.+- ..... ....+...+ ....| +.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~L~~~-~~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------SLMDT-GQVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------hhhCC-CCEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 46789999999999999999988 799999766321 11111 222233333 23333 2578999998754
Q ss_pred cccCChHHHHHHHHHhccCC--eEEEEEE-CCCCCCHHHHHHHHHHH
Q 008262 350 NWTRDDGILLLEVNRMLRAG--GYFAWAA-QPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPG--G~lv~st-~P~~~tl~EL~~~w~~~ 393 (572)
..+..++.-+.+-|..| ..+++.- +|.....++.++....+
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 56677777788888766 4555552 34445555555544333
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0018 Score=69.60 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=61.6
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-CC-CC--------------C
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP-YP--------------S 336 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-LP-fp--------------~ 336 (572)
.+|||++||+|.++..|+.. .|+++|+++.++..+.. .+...++.. .+...|... ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988875 79999999998866553 344445533 344444332 11 10 1
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
..||+|+...-.-.+ ...++..+. +|++.++++..|
T Consensus 287 ~~~D~v~lDPPR~G~---~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPRAGL---DDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCCCCC---cHHHHHHHH---ccCCEEEEEeCH
Confidence 258999976442111 134444444 479999999753
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=70.66 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=60.4
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-CC-------C---C-----C
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP-------Y---P-----S 336 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-LP-------f---p-----~ 336 (572)
.+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...++.. .+...|.+. ++ + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 46999999999999988875 89999999998866653 344455533 344444333 11 1 0 1
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..||+|+...-.-.+ ...++..+ ++|++.+++++.
T Consensus 278 ~~~d~v~lDPPR~G~---~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 278 YNCSTIFVDPPRAGL---DPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred CCCCEEEECCCCCCC---cHHHHHHH---HcCCcEEEEEcC
Confidence 237999865432111 13444444 348999999974
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=67.51 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
-..+.|||+|||+|.++...+.. +|.+++.|. |...++. ......+.. .++.+.+|++.+| +..|+|++-.+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~-Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPM 252 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK-LVASNNLADRITVIPGKIEDIELP-EKVDVIISEPM 252 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH-HHhcCCccceEEEccCccccccCc-hhccEEEeccc
Confidence 35688999999999877555443 899998776 4433332 222223222 2333346777666 68999998665
Q ss_pred cccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 348 RINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 348 l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
..-+.++. -.....++|.|||.|..+=+
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 33332221 23344567999999998644
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0042 Score=67.26 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=74.4
Q ss_pred CCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccc-cCCC---CCCCCeeEEEe
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFAT-RRLP---YPSQAFDLIHC 344 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~-e~LP---fp~~sFDlI~s 344 (572)
+++|||+=|=||.|+.+.+.. +|++||+|...+.-+..++.. +++. ..+...|+ +-|. -....||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 689999999999988776654 899999999877655544433 3432 23444342 2222 12348999997
Q ss_pred cccccc--------ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 345 SRCRIN--------WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 345 s~~l~h--------w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
-.-... ...+...++..+.++|+|||.+++++-...-..+++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~ 347 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFL 347 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHH
Confidence 653322 1233358899999999999999999743344444433
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0017 Score=67.65 Aligned_cols=117 Identities=19% Similarity=0.242 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----------CCeEEEeCCccchHHHHHHHHHHcCCCc--
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------RNVITMSIAPKDVHENQIQFALERGAPA-- 322 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----------~~V~gvDiSp~dl~~a~~~~A~~rg~~~-- 322 (572)
....+.+.+++. .....+|||-.||+|.|...+.+ .+++|+|+++....-+...... ++...
T Consensus 32 ~~i~~l~~~~~~----~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~ 106 (311)
T PF02384_consen 32 REIVDLMVKLLN----PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSN 106 (311)
T ss_dssp HHHHHHHHHHHT----T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBG
T ss_pred HHHHHHHHhhhh----ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccc
Confidence 344555555554 34567899999999998766543 2799999998776555544433 22211
Q ss_pred -EEEeccccCCC-CC-CCCeeEEEeccccccc--cC-----C------------h-HHHHHHHHHhccCCeEEEEEEC
Q 008262 323 -MVAAFATRRLP-YP-SQAFDLIHCSRCRINW--TR-----D------------D-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 323 -~~~~~d~e~LP-fp-~~sFDlI~ss~~l~hw--~~-----d------------~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+...|.-..+ +. .+.||+|+++.-+... .. + . -.++..+.+.|++||.+.+..+
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 13333322222 22 5789999998754332 10 0 0 1578889999999999877754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0042 Score=62.18 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=65.4
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc---EEEeccccCCC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRLP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~---~~~~~d~e~LP-----fp~~sFD 340 (572)
.++++||||.=||.-+..++.. .|+++|+........ .++.+..|... .+.....+.|+ .+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 3588999998888654444432 899999988655333 23334344322 12211223332 3578999
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++. -||-.+....+.++.++||+||.+++..
T Consensus 152 faFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 152 FAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 9984 6675555789999999999999999874
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0045 Score=68.02 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=83.0
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~ 316 (572)
+-.+.|+.+ .|-.......+.|.+...+.....+..++||+=||.|.|+..|+++ +|+|+|+++.++..++ +.|+
T Consensus 260 ~~~~~~~~~--sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~ 336 (432)
T COG2265 260 GVSFQISPR--SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAA 336 (432)
T ss_pred ceEEEeCCC--CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHH
Confidence 344444432 4444444444455444433322345678999999999999999977 8999999998886555 5566
Q ss_pred HcCCCc-EEEeccccCCCC---CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 317 ERGAPA-MVAAFATRRLPY---PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 317 ~rg~~~-~~~~~d~e~LPf---p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..++.+ .+...+.+++.- ....+|.|+...-.-.. ..-+.+....++|-..+++|+.
T Consensus 337 ~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~----~~~~lk~l~~~~p~~IvYVSCN 397 (432)
T COG2265 337 ANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA----DREVLKQLAKLKPKRIVYVSCN 397 (432)
T ss_pred HcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCC----CHHHHHHHHhcCCCcEEEEeCC
Confidence 666664 444455555542 23578999954321111 2233334446788999999974
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=62.52 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=76.6
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~ 314 (572)
.|..+..|.+ ...+...+...+.|...|... .-.+.++||+-||+|.++...+.+ .|+.+|.++..+...+ +.
T Consensus 9 kgr~l~~p~~-~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N 84 (183)
T PF03602_consen 9 KGRKLKTPKG-DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KN 84 (183)
T ss_dssp TT-EEE-TT---TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HH
T ss_pred CCCEecCCCC-CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HH
Confidence 3445555544 223445566677777777632 125689999999999999988776 7999999986553333 23
Q ss_pred HHHcCCCc--EEEecc-ccCCC---CCCCCeeEEEeccccccccCChHHHHHHHH--HhccCCeEEEEEEC
Q 008262 315 ALERGAPA--MVAAFA-TRRLP---YPSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 377 (572)
Q Consensus 315 A~~rg~~~--~~~~~d-~e~LP---fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~--RvLKPGG~lv~st~ 377 (572)
+...+... .+...| ...+. .....||+|+...-.... .....++..+. ..|+++|.+++-..
T Consensus 85 ~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~-~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 85 LEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKG-LYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSC-HHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccc-hHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33334332 233333 22222 246899999987542221 10256677666 79999999999863
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0031 Score=64.59 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp 335 (572)
.++++.+... ..+...|||||+|.|.++..|+++ .|+++++++.++..-....+ ......+...|+-...++
T Consensus 18 v~~kIv~~a~----~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 18 VIDKIVEAAN----ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHhcC----CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 3667776665 234789999999999999999988 89999999866533222222 112233445566666665
Q ss_pred CC-CeeEEEecc
Q 008262 336 SQ-AFDLIHCSR 346 (572)
Q Consensus 336 ~~-sFDlI~ss~ 346 (572)
+- .++.|+++.
T Consensus 92 ~l~~~~~vVaNl 103 (259)
T COG0030 92 SLAQPYKVVANL 103 (259)
T ss_pred hhcCCCEEEEcC
Confidence 43 688999773
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=58.93 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHhccccccCCC-CCEEEEECCCCchhHH----HhccCCeEEEeCCccchHHHHHHHHHHcCCCc-EEEec
Q 008262 254 GADQYLDQIAKMVPDITWGHH-IRVVMDAGCGVASFGA----YLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAF 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~-~~~VLDIGCGtG~~a~----~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~ 327 (572)
..+-+.+++.+.+.-...... ..+++|||+|.|.=+. ...+.+|+-+|-..+-+. --.+.+.+.++++ .+...
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~-FL~~~~~eL~L~nv~i~~~ 124 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIA-FLREVKKELGLENVEIVHG 124 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHH-HHHHHHHHhCCCCeEEehh
Confidence 345556666665542221222 5899999999994333 333447887776654321 1123445667774 34444
Q ss_pred cccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
-+|.+.-....||+|+|..+ .+...++.=+...||+||.+++.
T Consensus 125 RaE~~~~~~~~~D~vtsRAv-----a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 125 RAEEFGQEKKQYDVVTSRAV-----ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred hHhhcccccccCcEEEeehc-----cchHHHHHHHHHhcccCCcchhh
Confidence 45555421111999998865 56678888899999999987654
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=57.48 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=82.8
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~ 314 (572)
+|..+.+|.+ ...+...+...+.|...|... .-.+.++||+=+|+|.++...+.+ .++.+|.+.........+
T Consensus 10 kgr~L~~p~~-~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N- 85 (187)
T COG0742 10 KGRKLKTPDG-PGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN- 85 (187)
T ss_pred cCCcccCCCC-CCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH-
Confidence 3445566654 233556677788888888631 135789999999999999988887 799999887655333322
Q ss_pred HHHcC--CCcEEEecccc-CCCCCCC--CeeEEEeccccccccCChHHHHHH--HHHhccCCeEEEEEEC
Q 008262 315 ALERG--APAMVAAFATR-RLPYPSQ--AFDLIHCSRCRINWTRDDGILLLE--VNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 315 A~~rg--~~~~~~~~d~e-~LPfp~~--sFDlI~ss~~l~hw~~d~~~~L~e--i~RvLKPGG~lv~st~ 377 (572)
....+ ....+...|.. -|+-... .||+|+.-.-...-.-+....+.. -...|+|+|.+++-..
T Consensus 86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 33333 22333333333 2222222 499999876533111111233333 4577999999999863
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0068 Score=63.10 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CC-C-CCCCeeEEEec
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP-Y-PSQAFDLIHCS 345 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~-LP-f-p~~sFDlI~ss 345 (572)
+++|||+=|=||.|+.+.+.. +|++||.|...+..+..+.+. .++. ..+...|+.. +. . ..+.||+|++.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 579999999999998875544 799999999888666655444 3432 2333334321 21 0 24689999986
Q ss_pred ccccc-----ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRIN-----WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~h-----w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.-... ...+...++..+.++|+|||.+++++.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 54332 112335788899999999999988764
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.003 Score=59.04 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHH--hcc-CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAY--LLP-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~--L~~-~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
..++..+-+...+ -.+++++|+|||.|.+... +.+ +.|+|+|+.+..+.-. .+.+.+..+...+...++..+
T Consensus 34 asM~~~Ih~Tygd----iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf-~rNaeEfEvqidlLqcdildl 108 (185)
T KOG3420|consen 34 ASMLYTIHNTYGD----IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIF-TRNAEEFEVQIDLLQCDILDL 108 (185)
T ss_pred HHHHHHHHhhhcc----ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHH-hhchHHhhhhhheeeeeccch
Confidence 3344444444443 3578899999999976632 223 3899999999766333 234444444444555566666
Q ss_pred CCCCCCeeEEEeccc
Q 008262 333 PYPSQAFDLIHCSRC 347 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~ 347 (572)
-+..+.||.++.+.-
T Consensus 109 e~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 109 ELKGGIFDTAVINPP 123 (185)
T ss_pred hccCCeEeeEEecCC
Confidence 666688999987754
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=65.96 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCCEEEEECCCCchhHHHhcc------------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-cc-CC---CCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLP------------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TR-RL---PYPS 336 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~------------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e-~L---Pfp~ 336 (572)
...+|||.|||+|.|...+++ .+++|+|+++..+..+.............+...+ .. .+ .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 346899999999988776643 2578888888666544433322211111111111 00 01 1112
Q ss_pred CCeeEEEeccccc
Q 008262 337 QAFDLIHCSRCRI 349 (572)
Q Consensus 337 ~sFDlI~ss~~l~ 349 (572)
+.||+|+++.-..
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999987544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.013 Score=60.11 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=56.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--c--EEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--A--MVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~--~~~~~d~e 330 (572)
..+++|.+... .++...|||+|-|||.++..|++. +|+++++++.|+.+-.... .|.+ . .+...|.-
T Consensus 45 ~v~~~I~~ka~----~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 45 LVIDQIVEKAD----LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHHHhccC----CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccc
Confidence 34555555444 367789999999999999999987 8999999999885544322 2333 2 23333433
Q ss_pred CCCCCCCCeeEEEeccccccc
Q 008262 331 RLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw 351 (572)
..++ -.||.++++.- .++
T Consensus 118 K~d~--P~fd~cVsNlP-yqI 135 (315)
T KOG0820|consen 118 KTDL--PRFDGCVSNLP-YQI 135 (315)
T ss_pred cCCC--cccceeeccCC-ccc
Confidence 3333 36999997633 444
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.035 Score=56.95 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=68.3
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR 331 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~ 331 (572)
+..|..+|. ..++.+||+-|.|+|+++.+++.. .++..|+...-..++..++.. .++.. .+..-|...
T Consensus 94 ia~I~~~L~----i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLE----IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE-HGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhc----CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH-hCCCcceEEEEeeccc
Confidence 445555665 357899999999999998888765 789998866544444444433 33332 233334544
Q ss_pred CCC--CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 332 LPY--PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LPf--p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
..| .+..+|.|+.. + +.+-.++--++.+||-+|.-+.+
T Consensus 169 ~GF~~ks~~aDaVFLD-l-----PaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFLD-L-----PAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred CCccccccccceEEEc-C-----CChhhhhhhhHHHhhhcCceEEe
Confidence 444 36789999854 2 44455666777799988754444
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.011 Score=63.81 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=65.2
Q ss_pred CEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-CCCCCCeeEEEecccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-PYPSQAFDLIHCSRCR 348 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L-Pfp~~sFDlI~ss~~l 348 (572)
-+|||+.||+|..+..++.+ .|+++|+++..+..... .++..+.. ..+...|...+ ....+.||+|....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~-N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKN-NVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999887754 59999999976644333 33333443 23333343332 22235799999653
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+ ..+..++..+.+.++.||++.++
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 34458999999999999999999
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.025 Score=57.01 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEE-EeccccCCC---CCCCCeeEEEe
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLP---YPSQAFDLIHC 344 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~-~~~d~e~LP---fp~~sFDlI~s 344 (572)
..+++.+||||.-||.|+..++++ .|+++|..-..++. .......... ...+...+. +. +..|+|+|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~ 150 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVI 150 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEE
Confidence 457799999999999999999987 89999998764422 1222222211 111222222 22 36789998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
--+++.. ..+|-.+..+|+++|.++.-.-
T Consensus 151 DvSFISL----~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 151 DVSFISL----KLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred EeehhhH----HHHHHHHHHhcCCCceEEEEec
Confidence 7665544 7899999999999999887643
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.019 Score=57.15 Aligned_cols=111 Identities=14% Similarity=0.246 Sum_probs=69.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc--ccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFA--TRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d--~e~ 331 (572)
.+.+.+++.+. .++++||.||-|-|...-.+.++ .-+.++..+.-+ +.+...+... -.+++.... ...
T Consensus 89 piMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~e-k~nViil~g~WeDv 161 (271)
T KOG1709|consen 89 PIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWRE-KENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccccc-ccceEEEecchHhh
Confidence 45555555554 46789999999999888888776 344566666322 2222222111 112222111 122
Q ss_pred CC-CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 332 LP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LP-fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
++ ++++.||-|.-.....+. +|...+.+.+.|+|||+|.|-+-
T Consensus 162 l~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 23 568899999965333444 77788999999999999998665
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.031 Score=59.55 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=82.2
Q ss_pred CccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--
Q 008262 248 GTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-- 322 (572)
Q Consensus 248 g~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~-- 322 (572)
..+|..+-..-..++++... .+.+|||+=||.|.|+..++.. .|+++|++|..+.... +.++.+++..
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v 240 (341)
T COG2520 168 KVYFSPRLSTERARVAELVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRV 240 (341)
T ss_pred HeEECCCchHHHHHHHhhhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCcccee
Confidence 34454444444455666655 3689999999999999887765 5999999997664433 3444444443
Q ss_pred EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 323 MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 323 ~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+|........+.||-|++... .+...++..+.+.||+||.+.+-.+
T Consensus 241 ~~i~gD~rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 241 EPILGDAREVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eEEeccHHHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 2344566666655588999997643 3446788889999999999988864
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.039 Score=51.13 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----C---CeEEEeCCccchHHHHHHHHHHcC--C-CcE-EEeccccCCCCCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----R---NVITMSIAPKDVHENQIQFALERG--A-PAM-VAAFATRRLPYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~---~V~gvDiSp~dl~~a~~~~A~~rg--~-~~~-~~~~d~e~LPfp~~sFD 340 (572)
.+..+|+|+|||.|+++..|+. . .|+++|..+..+..+. ..+++.+ . ... +...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 5678899999999999998887 3 8999999987654433 3333333 1 111 1111111111 145566
Q ss_pred EEEeccccccccCChH-HHHHHHHHhccCCeEEEEE
Q 008262 341 LIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~-~~L~ei~RvLKPGG~lv~s 375 (572)
+++. +|.+.+.. .+|+...+ ++-.+++.
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEE
Confidence 6663 67777774 55555444 55555444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.01 Score=63.61 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=40.2
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA 322 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~ 322 (572)
.+.+.+.+.+. ..+ .+|||+=||+|.++..|++. +|+|+|+.+.++..+. +.|...++.+
T Consensus 184 ~l~~~~~~~l~----~~~-~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n 245 (352)
T PF05958_consen 184 KLYEQALEWLD----LSK-GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHCT----T-T-TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--S
T ss_pred HHHHHHHHHhh----cCC-CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCc
Confidence 44444555554 222 37999999999999999987 8999999998886655 4555566654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.037 Score=55.46 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--C--CCCCeeEE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--Y--PSQAFDLI 342 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--f--p~~sFDlI 342 (572)
..++.+||-+|..+|..-.++.+- .|+++++|+... ...+..|+.|. +++-.....+.| | --+.+|+|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~--NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP--NIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST--TEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC--ceeeeeccCCChHHhhcccccccEE
Confidence 356789999999999777666553 699999999654 44457777764 222222112233 1 13489999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++. + ...+....++.++...||+||.++++.
T Consensus 148 ~~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 148 FQD-V--AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEE----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec-C--CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 976 2 221333578888999999999999984
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0099 Score=62.18 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
++++.+.+. ..++..+||.+||.|..+..+++. .|+|+|.++.++..+...... .-...+...+...+.
T Consensus 8 l~Evl~~L~----~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 8 LDEVVDALA----IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK 81 (296)
T ss_pred HHHHHHhhC----CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH
Confidence 455555554 235579999999999999888865 699999999888665433322 112233333333322
Q ss_pred --CCC--CCeeEEEecc
Q 008262 334 --YPS--QAFDLIHCSR 346 (572)
Q Consensus 334 --fp~--~sFDlI~ss~ 346 (572)
.+. .++|.|++..
T Consensus 82 ~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 82 EVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHcCCCccCEEEECC
Confidence 111 2799999754
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0019 Score=60.93 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=42.9
Q ss_pred ccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+|.++|.|+|.+..++.|+.-+. ..++++++|+|||||+|-++.+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 466789999999999999999986554 4899999999999999999964
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.17 Score=54.34 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=65.9
Q ss_pred CCCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CC-CCCeeE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YP-SQAFDL 341 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP--fp-~~sFDl 341 (572)
..++.+|||+-++.|.=+.++++. .|+++|.++.-+.. ..+..+..|..+ .+...|...++ .. .+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~-l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKR-LRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHH-HHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 456799999999999655444443 36999999865533 334445556665 33333444443 22 235999
Q ss_pred EEecc----c-ccc------ccCCh----------HHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSR----C-RIN------WTRDD----------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~----~-l~h------w~~d~----------~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.-. . .++ |.... ..+|..+.++|||||.|+.+|
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99532 1 111 21111 178899999999999999997
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.027 Score=58.85 Aligned_cols=122 Identities=9% Similarity=0.109 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHH--HHHHHHcCC----------
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQ--IQFALERGA---------- 320 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~--~~~A~~rg~---------- 320 (572)
+..++++|..+.+........-+||-=|||.|.++..|+.. .+.|-++|--|+--.. ++..+..+-
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 45678888888775433445667999999999999999876 5556677766653221 111111110
Q ss_pred ---------------Cc-------------EEEeccc-cCCC--CCCCCeeEEEeccccccccCChHHHHHHHHHhccCC
Q 008262 321 ---------------PA-------------MVAAFAT-RRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAG 369 (572)
Q Consensus 321 ---------------~~-------------~~~~~d~-e~LP--fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPG 369 (572)
+. .++.+|. +-.+ -..++||+|+.+ .++.-..+.-.+|..|..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc-fFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC-FFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE-EEeechHHHHHHHHHHHHhccCC
Confidence 00 0000110 0001 112469999976 33555556668999999999999
Q ss_pred eEEEEEEC
Q 008262 370 GYFAWAAQ 377 (572)
Q Consensus 370 G~lv~st~ 377 (572)
|+++=..+
T Consensus 290 GvWiNlGP 297 (369)
T KOG2798|consen 290 GVWINLGP 297 (369)
T ss_pred cEEEeccc
Confidence 99986654
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.029 Score=55.65 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc---C-CeEEEeCCccchHHHHH--HH----HHHcCCC---
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---R-NVITMSIAPKDVHENQI--QF----ALERGAP--- 321 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~---~-~V~gvDiSp~dl~~a~~--~~----A~~rg~~--- 321 (572)
.-..+..+.+.+. ..+....+|||||.|....+.+- . ..+|+++.+.-...+.. +. ....+..
T Consensus 27 ~~~~~~~il~~~~----l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 102 (205)
T PF08123_consen 27 SPEFVSKILDELN----LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGK 102 (205)
T ss_dssp HHHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---E
T ss_pred CHHHHHHHHHHhC----CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3344555555554 24678999999999965433332 2 59999998863322221 11 1112221
Q ss_pred cEEEeccccCCCCC---CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 322 AMVAAFATRRLPYP---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 322 ~~~~~~d~e~LPfp---~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+...|.-..++. -..-|+|+++... +.++....|.+....||+|-+++ ++.
T Consensus 103 v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 103 VELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp EEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred ceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 11222222111110 0246999998642 33455677788888999988875 543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.042 Score=59.49 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCEEEEECCCCchhHHHhcc-------------------CCeEEEeCCccchHHHHHHHHHH-------------cCCCc
Q 008262 275 IRVVMDAGCGVASFGAYLLP-------------------RNVITMSIAPKDVHENQIQFALE-------------RGAPA 322 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~-------------------~~V~gvDiSp~dl~~a~~~~A~~-------------rg~~~ 322 (572)
..+|+|+|||+|..+..+.. -+|.--|+-.+|...-......- .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999965543321 14555677777765433322110 11111
Q ss_pred EEEec---cccCCCCCCCCeeEEEeccccccccCC
Q 008262 323 MVAAF---ATRRLPYPSQAFDLIHCSRCRINWTRD 354 (572)
Q Consensus 323 ~~~~~---d~e~LPfp~~sFDlI~ss~~l~hw~~d 354 (572)
.+..+ ....--||+++.+++||+.+ +||...
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceeccc
Confidence 22211 11222278999999999876 788763
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.034 Score=56.94 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
....++.+.+.+. ..+...|||||+|+|.++..|++. +|+++|+++.....-...+. ......+...|...+
T Consensus 15 ~~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 15 DPNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 3456777777775 236789999999999999999876 89999999865422221111 122334555566666
Q ss_pred CCCC---CCeeEEEeccccccccCChHHHHHHHHHhccC
Q 008262 333 PYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRA 368 (572)
Q Consensus 333 Pfp~---~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKP 368 (572)
..+. +.-..|+++.- + .-...++.++...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlP---y-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLP---Y-NISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEET---G-TGHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEec---c-cchHHHHHHHhhcccc
Confidence 6543 45667776532 2 2224666666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.053 Score=53.27 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHhc--cC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLL--PR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~--~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
-.+++|||+|.|+|..+..-+ .. .|+..|+.|... .+..-.+..++....+... +.+- .+..||+|+.+.++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~--d~~g-~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHA--DLIG-SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeec--cccC-CCcceeEEEeeceec
Confidence 356899999999996554433 33 788889987433 3222233444543333322 2333 678999999876533
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEECCCCCCH
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE 383 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl 383 (572)
.- ..-..++. +.+.|+-.|.-++..-|.-..+
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 22 22235555 8888877777777654554443
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.1 Score=55.40 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc---EEEecc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA---MVAAFA 328 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~---~~~~~d 328 (572)
..++.|....+++ ..++|||+|.|.|.-..++-+- +++.++.|+. +.+.-...+..-.... .-....
T Consensus 100 asL~~L~~~~~df----apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 100 ASLDELQKRVPDF----APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHhCCCc----CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccc
Confidence 4455565566543 5677999999988655544432 5555666652 3222222222211110 000111
Q ss_pred ccCCCCC-CCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYP-SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp-~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++++++ ...|++|+...-+++-.... ...++.+..++.|||.|++...
T Consensus 175 ~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 175 EDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 3456654 35677776544333332221 2478888899999999999964
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.096 Score=61.18 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCchhHHHhcc----------------------------------------------CCeEEEeCCccch
Q 008262 274 HIRVVMDAGCGVASFGAYLLP----------------------------------------------RNVITMSIAPKDV 307 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----------------------------------------------~~V~gvDiSp~dl 307 (572)
+...++|-+||+|.+....+. ..++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 457899999999987754321 1489999999988
Q ss_pred HHHHHHHHHHcCCCc--EEEeccccCCCCC--CCCeeEEEeccccccccCC---hHHHHHHH---HHhccCCeEEEEEE
Q 008262 308 HENQIQFALERGAPA--MVAAFATRRLPYP--SQAFDLIHCSRCRINWTRD---DGILLLEV---NRMLRAGGYFAWAA 376 (572)
Q Consensus 308 ~~a~~~~A~~rg~~~--~~~~~d~e~LPfp--~~sFDlI~ss~~l~hw~~d---~~~~L~ei---~RvLKPGG~lv~st 376 (572)
..+..+ +...|+.. .+...|...++.+ .++||+|+++.-...-..+ ...+..++ .+.+.+|+.+++.+
T Consensus 270 ~~A~~N-~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKN-ARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHH-HHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 666543 33445532 3445566666543 3579999998653322221 22333333 34444888887765
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.012 Score=51.36 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=36.5
Q ss_pred EEECCCCchhHHHhccC-------CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-CCCCCeeEEEeccc
Q 008262 279 MDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-YPSQAFDLIHCSRC 347 (572)
Q Consensus 279 LDIGCGtG~~a~~L~~~-------~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LP-fp~~sFDlI~ss~~ 347 (572)
||||+..|..+..+++. +++++|..+. . +...+..++.+.. ..+...+. +.++ ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999877776653 5899999874 1 1111222222222 22333322 1222 2357999999753
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 333244567889999999999999875
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.11 Score=51.37 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=24.8
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCcc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPK 305 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~ 305 (572)
-.+.|||||.|.+...|... -++|++|--.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K 95 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK 95 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHH
Confidence 45899999999999998876 6889887543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.15 Score=53.05 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=64.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEe-ccccCC-C-CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FATRRL-P-YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~-~d~e~L-P-fp~~sFDlI~s 344 (572)
.++.+|||+.+|.|.=+.++++. .|++.|++..-+..-. +.++..|....... .|...+ + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46688999999999655444432 7999999987553332 34445566554333 333333 2 22346999995
Q ss_pred cc-c--cccccCCh------------------HHHHHHHHHhc----cCCeEEEEEE
Q 008262 345 SR-C--RINWTRDD------------------GILLLEVNRML----RAGGYFAWAA 376 (572)
Q Consensus 345 s~-~--l~hw~~d~------------------~~~L~ei~RvL----KPGG~lv~st 376 (572)
.. | ...+..++ ..+|..+.+.| ||||+++.+|
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 22 1 11111111 16888999999 9999999998
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.24 Score=52.99 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=77.4
Q ss_pred eccCCCcccccc-HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH
Q 008262 243 KFPGGGTQFIHG-ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE 317 (572)
Q Consensus 243 ~Fpggg~~f~~g-~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~ 317 (572)
-+-.|+.||... ..+|-+.+.- +........++||-+|.|.|.-+++|++. +|+-+|++|.|++-+....+..
T Consensus 259 LYldG~LQfsTrDe~RYhEsLV~--pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr 336 (508)
T COG4262 259 LYLDGGLQFSTRDEYRYHESLVY--PALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLR 336 (508)
T ss_pred EEEcCceeeeechhhhhhheeee--cccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhh
Confidence 445566777442 3345444421 21111245689999999999999999876 7999999999986544222211
Q ss_pred c---C----CCcEEEecccc-CCCCCCCCeeEEEeccccccccCCh-----HHHHHHHHHhccCCeEEEEEE
Q 008262 318 R---G----APAMVAAFATR-RLPYPSQAFDLIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 318 r---g----~~~~~~~~d~e-~LPfp~~sFDlI~ss~~l~hw~~d~-----~~~L~ei~RvLKPGG~lv~st 376 (572)
. + ....+...|+- -+.-..+.||.|+...- ..-.+.. ..+..-+.|.|+++|.+++..
T Consensus 337 ~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 337 ALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 1 1 11223333322 22234568999995421 1111111 256677889999999999984
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.18 Score=53.72 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+++.+|+=+|+| .|.++.+++.. +|+++|.++. ..+.|++.|....+...+.+...--.+.||+|+.. +
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~-----K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-v- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEE-----KLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-V- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChH-----HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-C-
Confidence 567889999988 34677777663 8999998874 44778777765544422222222112349999964 2
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
. ...+.+..+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788889999999999999754
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.25 Score=52.59 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC--------------------CeEEEeCCccchHHHHHHHHHHc----CCCcEEEec-
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALER----GAPAMVAAF- 327 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~- 327 (572)
.+.-+|+|+||..|..+..+... +|+--|+-.+|...-........ .....+..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45568999999999655443221 46666888887754332221110 022223221
Q ss_pred --cccCCCCCCCCeeEEEeccccccccC
Q 008262 328 --ATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 328 --d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
....-=||++|.|+++|+.+ +||..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEech-hhhcc
Confidence 22222378999999999866 77765
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.36 Score=49.83 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCc--hhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-------------CC
Q 008262 274 HIRVVMDAGCGVA--SFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-------------LP 333 (572)
Q Consensus 274 ~~~~VLDIGCGtG--~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-------------LP 333 (572)
..+..||||||-- ....++++ .+|+-+|..|.-+..++.-.+....-...+...|..+ |.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5688999999943 23333432 2899999999655333221221111012343334222 22
Q ss_pred CCCCCeeEEEeccccccccCC---hHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d---~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
| ++..=+++ ..+ +|+..| +..++..+...|.||.+|+++..
T Consensus 148 ~-~rPVavll-~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 F-DRPVAVLL-VAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-TS--EEEE-CT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred C-CCCeeeee-eee-eccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2 34444444 335 444444 46999999999999999999964
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.16 Score=48.61 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=62.8
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEE-ec----cccCCCCCCCCeeE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVA-AF----ATRRLPYPSQAFDL 341 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~-~~----d~e~LPfp~~sFDl 341 (572)
.+++||++|.|--.++..|... .|.-.|-....+ ..++....++.. ..-+ +. ...+.....+.||+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv--rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV--RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH--HHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 3478999999965555555433 566666654433 222333222210 0001 00 01122234568999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCH
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE 383 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl 383 (572)
|+|+.| ..+.+.-..+..-|.+.|||.|.-++..+--..++
T Consensus 107 IlaADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL 147 (201)
T KOG3201|consen 107 ILAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSL 147 (201)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccchH
Confidence 999998 44434457889999999999999888865333333
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.23 Score=47.61 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=40.1
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-C-CCCCC-eeEEEecc
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-P-YPSQA-FDLIHCSR 346 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~L-P-fp~~s-FDlI~ss~ 346 (572)
..|||+.||.|..+.+++.. .|+++|+++..+.-++ ..|+..|+. ..+...|...+ + +.... ||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999987 7999999997664333 345555543 23334443222 1 11122 89999764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.67 Score=50.07 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCchhHHHhccC-------------------------------------------CeEEEeCCccchHHH
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-------------------------------------------NVITMSIAPKDVHEN 310 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-------------------------------------------~V~gvDiSp~dl~~a 310 (572)
+...++|-=||+|.+....+-. .++|+|+++.++..+
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 3468999999999887543321 166999999998665
Q ss_pred HHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccc-cccCC--h----HHHHHHHHHhccCCeEEEEEEC
Q 008262 311 QIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI-NWTRD--D----GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 311 ~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~-hw~~d--~----~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ..|+..|+. ..+...|...++-+-+.+|+|+|+.-.- -+... . ..+.+.+.+.++--+.+++++.
T Consensus 271 k-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 271 K-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred H-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 5 456666765 3455567777764447999999986321 11111 1 2445566788888889999874
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.14 Score=46.62 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHH
Q 008262 277 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ 313 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~ 313 (572)
++||+|||.|.++..++.. +|+++|.++.+....+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 4899999999998887754 599999999877554433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.15 Score=49.88 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=60.3
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc----CCCc-EEEeccccCCCCCCCCeeEEEecccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----GAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r----g~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+.|+|+|+|.++...+.. +|++++..|.-. ..|.+. |..+ .+...|+....| ...|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 56999999999887665554 899999988532 334333 2222 344455555566 567999986431
Q ss_pred ccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 349 INWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
-.+..+. ...+..+...||-+|.++=.
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccccH
Confidence 2222222 36777788889999887543
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.79 Score=45.51 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC----CCCCCeeEEE
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP----YPSQAFDLIH 343 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP----fp~~sFDlI~ 343 (572)
..++.+||=+|+.+|....++.+- .++++++|+....+ .+..|.+|.. ++-.....+.| .-=+..|+|+
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R~N--i~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKRPN--IIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhCCC--ceeeecccCCcHHhhhhcccccEEE
Confidence 467889999999999877777654 59999999987644 4466666532 22211112333 1134689999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+.- .-.+....+..++...||+||+++++
T Consensus 151 ~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 151 QDV---AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred Eec---CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 652 22122357888899999999988887
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.58 Score=49.13 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHhccccccC-CCCCEEEEECCCCch----hHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEE---
Q 008262 254 GADQYLDQIAKMVPDITWG-HHIRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA--- 325 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~-~~~~~VLDIGCGtG~----~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~--- 325 (572)
+...|+..|.++|...... ...-++||||||..- ++..+..-+++|.|+++..+..|+....+..++...+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 5567888888877642111 124679999999873 33333344899999999888777655554424432221
Q ss_pred eccccC----CCCCCCCeeEEEeccccccc
Q 008262 326 AFATRR----LPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 326 ~~d~e~----LPfp~~sFDlI~ss~~l~hw 351 (572)
..+... +--+.+.||+.+|+.-++.-
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred cCCccccchhhhcccceeeEEecCCccccC
Confidence 111111 22235689999998764443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.3 Score=48.23 Aligned_cols=104 Identities=15% Similarity=0.293 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCCch----hHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEE
Q 008262 272 GHHIRVVMDAGCGVAS----FGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLI 342 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~----~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LP---fp~~sFDlI 342 (572)
.+++.+|||+-+-.|. .++.|... .|++.|.+..-+. ...+.+...|+.+.+. ..|...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 4678899999999883 33344444 6788887765442 2334455567665443 34555554 554 89999
Q ss_pred E----ecccccc-------ccCC----------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 H----CSRCRIN-------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~----ss~~l~h-------w~~d----------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. |+..-+- |... ..++|..+...+++||+|+.+|-
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 8 4441111 1111 12788889999999999999984
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.68 Score=46.00 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=60.7
Q ss_pred EEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-E-E-EeccccCCCCCCCCeeEEEecccccc
Q 008262 278 VMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-M-V-AAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 278 VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~-~-~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
|.||||--|.+..+|.++ .++++|+++.-+..+....+. .++.. . + ...+.+.++- .+..|.|+...+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--G-GG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCC-CCCCCEEEEecCCHH
Confidence 689999999999999987 699999999888777655554 44332 1 2 2222344432 223788887665222
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
. ...+|.+....++..-.|++.- .....++|+
T Consensus 79 l---I~~ILe~~~~~~~~~~~lILqP---~~~~~~LR~ 110 (205)
T PF04816_consen 79 L---IIEILEAGPEKLSSAKRLILQP---NTHAYELRR 110 (205)
T ss_dssp H---HHHHHHHTGGGGTT--EEEEEE---SS-HHHHHH
T ss_pred H---HHHHHHhhHHHhccCCeEEEeC---CCChHHHHH
Confidence 2 2467777777787777898883 244455554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.76 Score=47.73 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCCEEEEECCCCchhHHHhc-cC-----CeEEEeCCccchHHHHHHHHH---HcCCCcEEEeccccCCCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLL-PR-----NVITMSIAPKDVHENQIQFAL---ERGAPAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~-~~-----~V~gvDiSp~dl~~a~~~~A~---~rg~~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.+++|+=||||.=-++..+. +. .|+++|+++.....++ +... ..+....+...|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 45699999999764444333 22 5889999987664443 2222 1122234444455555544468999997
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.....--..+...+|.++.+.++||..+++..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 64422222355799999999999999999885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.34 Score=53.92 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCEEEEECCCCchhHHHhcc------C--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecc
Q 008262 275 IRVVMDAGCGVASFGAYLLP------R--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~------~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
...|+-+|.|-|-+....++ + ++++++-.|..+..-+...-..-.-...+...|+..++-+....|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 45689999999966544332 2 78899988876532221111111123345556788888556899999965
Q ss_pred ccccccCCh--HHHHHHHHHhccCCeEEEEE
Q 008262 347 CRINWTRDD--GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 347 ~l~hw~~d~--~~~L~ei~RvLKPGG~lv~s 375 (572)
.+..+.++. +..|.-+.+.|||+|..+=+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 445554433 69999999999999987654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.43 E-value=1.4 Score=43.41 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc----------cCCCCCC
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT----------RRLPYPS 336 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~----------e~LPfp~ 336 (572)
..+..+|||+||..|+|+....++ -|.|+|+-.... -.|... +...|. |. .+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p---------~~Ga~~-i~~~dvtdp~~~~ki~e~--lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP---------PEGATI-IQGNDVTDPETYRKIFEA--LPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC---------CCCccc-ccccccCCHHHHHHHHHh--CCC
Confidence 356789999999999999887766 588998754311 112111 111121 22 356
Q ss_pred CCeeEEEecccccccc----CChH-------HHHHHHHHhccCCeEEEEEE
Q 008262 337 QAFDLIHCSRCRINWT----RDDG-------ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~----~d~~-------~~L~ei~RvLKPGG~lv~st 376 (572)
...|+|+|.. +..-. .|.. .+|.-....++|+|.|+.-.
T Consensus 135 r~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 135 RPVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CcccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 8899999753 22211 1112 23444456778999999985
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.86 Score=45.01 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchH-------HHHHHHHHHcCCCcE-EEeccccCCC------
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVH-------ENQIQFALERGAPAM-VAAFATRRLP------ 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~-------~a~~~~A~~rg~~~~-~~~~d~e~LP------ 333 (572)
+++.+|+|+=-|.|.|++.+... .|++. .+.++. ......+++....+. ......-.++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~--~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY--VPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEe--cchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 56789999999999999988765 34443 232221 111111222211110 0000111122
Q ss_pred -CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 -YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 -fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+..++|.++.... +| ......+..++++.|||||.+++.++
T Consensus 125 ~~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 22334444443322 33 23346899999999999999999865
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.28 Score=54.48 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=54.1
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~ 316 (572)
+-.|+|+-+ ..| ......++.|...+.+.........+||+=||||.++..++.+ .|+|+++++..+..|. ..|.
T Consensus 350 ~ltF~iSp~-AFF-Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~ 426 (534)
T KOG2187|consen 350 GLTFRISPG-AFF-QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQ 426 (534)
T ss_pred CeEEEECCc-hhh-ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcch
Confidence 445555432 223 3333445555555554443455688999999999999999987 8999999998775554 4555
Q ss_pred HcCCCc
Q 008262 317 ERGAPA 322 (572)
Q Consensus 317 ~rg~~~ 322 (572)
..|+.+
T Consensus 427 ~NgisN 432 (534)
T KOG2187|consen 427 INGISN 432 (534)
T ss_pred hcCccc
Confidence 666654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.39 Score=42.97 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIA 303 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiS 303 (572)
.+.....|||||+|.+..-|... .-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 45678999999999988877766 45566543
|
; GO: 0008168 methyltransferase activity |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.2 Score=44.88 Aligned_cols=39 Identities=23% Similarity=0.587 Sum_probs=27.5
Q ss_pred CeeEEEecccc--cc--ccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCR--IN--WTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l--~h--w~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
.||+|.|..+. +| |.++. ..+|+.+++.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999987543 22 22221 379999999999999999983
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.67 E-value=2.2 Score=39.97 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=47.0
Q ss_pred CeEEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccCCC-C-CCCCeeEEEeccccccccC-----Ch---HHHHHHHH
Q 008262 296 NVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRRLP-Y-PSQAFDLIHCSRCRINWTR-----DD---GILLLEVN 363 (572)
Q Consensus 296 ~V~gvDiSp~dl~~a~~~~A~~rg~-~-~~~~~~d~e~LP-f-p~~sFDlI~ss~~l~hw~~-----d~---~~~L~ei~ 363 (572)
+|+++|+-+..+......... .+. . ..+...+-+.+. + +.+.+|+|+-+...+.-.+ .+ -.+++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~-~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE-AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH-TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHh-cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 478999888777555443333 333 2 223333333443 2 2358999997754433211 11 27899999
Q ss_pred HhccCCeEEEEEECCCCC
Q 008262 364 RMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 364 RvLKPGG~lv~st~P~~~ 381 (572)
++|+|||.+.+...++..
T Consensus 80 ~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHEEEEEEEEEEE--STC
T ss_pred HhhccCCEEEEEEeCCCC
Confidence 999999999999754433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.2 Score=49.05 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=66.9
Q ss_pred CCCCEEEEECCCCc--hhHHHhccC----CeEEEeCCccchHHHHHHHHH--HcCCCcEEE-eccccCCCCC-CCCeeEE
Q 008262 273 HHIRVVMDAGCGVA--SFGAYLLPR----NVITMSIAPKDVHENQIQFAL--ERGAPAMVA-AFATRRLPYP-SQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG--~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~--~rg~~~~~~-~~d~e~LPfp-~~sFDlI 342 (572)
..+..++|+|.|.| .++..++-+ .+..||.+-.|......+.-. +.|.....- ..--..+|.. .+.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 35677889988876 444444433 688889888776443332221 222211111 1112456644 4569999
Q ss_pred EeccccccccCChH---HHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 343 HCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 343 ~ss~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
+|++.+++...... ..-.-+.+..++||++++........++-+.++
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~ea 328 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEA 328 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHH
Confidence 99988777644332 223335677899999999864223333434443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.93 E-value=8.6 Score=38.75 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=74.6
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
.+..+++.+.. ..++.||||--|++..+|.+. .+++.|+++.-+..+..++.+...... +.+.-..-|+
T Consensus 6 RL~~va~~V~~------~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~-i~vr~~dgl~ 78 (226)
T COG2384 6 RLTTVANLVKQ------GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSER-IDVRLGDGLA 78 (226)
T ss_pred HHHHHHHHHHc------CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcce-EEEeccCCcc
Confidence 35566666652 344999999999999999876 688999999888766555554333222 2221122233
Q ss_pred -CC-CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 334 -YP-SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 334 -fp-~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+. +..+|.|+...+.-.. ...+|.+-.+.|+.==+|++. | .....+||+
T Consensus 79 ~l~~~d~~d~ivIAGMGG~l---I~~ILee~~~~l~~~~rlILQ--P-n~~~~~LR~ 129 (226)
T COG2384 79 VLELEDEIDVIVIAGMGGTL---IREILEEGKEKLKGVERLILQ--P-NIHTYELRE 129 (226)
T ss_pred ccCccCCcCEEEEeCCcHHH---HHHHHHHhhhhhcCcceEEEC--C-CCCHHHHHH
Confidence 33 3479999876552211 246777777777765677776 2 344555555
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.17 Score=52.36 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=26.2
Q ss_pred CeeEEEeccccccccCChHHH-HHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGIL-LLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~-L~ei~RvLKPGG~lv~st 376 (572)
.||+|.++..+... ...... .......++++|.++.+.
T Consensus 196 ~ydlIlsSetiy~~-~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSI-DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCc-chhhhhHhhhhhhcCCccchhhhhh
Confidence 68888887765544 333333 666777888999988774
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=86.47 E-value=2.5 Score=43.23 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
..+.+|||||||.--++...... .++|.|++..++.- -..+....+.+..+...|...- .+....|+.+..-+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~-l~~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF-LNAFLAVLGVPHDARVRDLLSD-PPKEPADLALLLKT 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH-HHHHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEET-
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH-HHHHHHhhCCCcceeEeeeecc-CCCCCcchhhHHHH
Confidence 35789999999999888766554 79999999876522 2233344455544444332222 24567899986543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=83.67 E-value=0.84 Score=43.76 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCeeEEEecccccccc----CCh------HHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWT----RDD------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~----~d~------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++||.+.|..++.|.. .|+ ...+.++.++|||||.|+++.+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999877766642 111 3889999999999999999964
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.60 E-value=4 Score=42.93 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=55.3
Q ss_pred CCCEEEEECCC-CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEec--cccCCCCCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCG-VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAF--ATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCG-tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~--d~e~LPfp~~sFDlI~ss~ 346 (572)
+..+||-+||| .|.++..++.. .|+++|.++. ..+.+++.|....+... +..++.-..+.||+|+...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR-----SLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH-----HHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence 46789989986 35555555543 4778877653 34667776654322111 1111111123589998542
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ....+..+.++||+||.+++..
T Consensus 244 G-------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 244 G-------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1356788899999999999875
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.48 E-value=4.1 Score=41.61 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
..+..|..-+.++ +..+..+||=+|+++|..-.+..+- -|+++++|+..- ...+..|+.|-...-+.. | .+
T Consensus 140 KLAA~I~gGvdni-hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkRtNiiPIiE-D-Ar 215 (317)
T KOG1596|consen 140 KLAAGILGGVDNI-HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKRTNIIPIIE-D-AR 215 (317)
T ss_pred HHHHHhhcCccce-eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhccCCceeeec-c-CC
Confidence 3333443333332 3467899999999999776666554 689999987532 333456665532111211 2 23
Q ss_pred CCC----CCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 332 LPY----PSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LPf----p~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
.|. .-.-.|+|++. + .- +|. ..+..++.-.||+||.|+++.
T Consensus 216 hP~KYRmlVgmVDvIFaD-v--aq-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 216 HPAKYRMLVGMVDVIFAD-V--AQ-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CchheeeeeeeEEEEecc-C--CC-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 332 12367888864 2 11 233 466778899999999999995
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=4.7 Score=45.52 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc---------CCC------
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR---------RLP------ 333 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e---------~LP------ 333 (572)
.++.+||=+|||. |..+...+.. .|+++|.++. ..+.+++.|..........+ .+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~-----rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE-----VAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 3578999999997 4444444333 7889988764 33566666544221111000 000
Q ss_pred ----CCC--CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 ----YPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 ----fp~--~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+ +.+|+|+.... ..-...+..+.+++.+.+||||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 46999997532 22212333446999999999999988753
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=82.65 E-value=4.7 Score=43.27 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-----C-CC-CCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----L-PY-PSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-----L-Pf-p~~sFD 340 (572)
.+..+||.+|||. |.++..+++. .|++++.++.. .+.+++.+... +......+ + .+ ..+.+|
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~-----~~~~~~~~~~~-vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPER-----LEMARSHLGAE-TINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH-----HHHHHHcCCcE-EEcCCcchHHHHHHHHHcCCCCCC
Confidence 3567899999987 7777666654 37888777543 35555552111 21111110 1 12 234699
Q ss_pred EEEeccccc--------------cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRI--------------NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~--------------hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+...... +-..+....+.++.+.|+++|.+++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 998642100 111234568899999999999998875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.23 E-value=1.8 Score=43.78 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCEEEEECCCCchhHHHhccC-------------CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-------C-
Q 008262 275 IRVVMDAGCGVASFGAYLLPR-------------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-------P- 333 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~-------------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-------P- 333 (572)
..+++|+-...|+|+..|.++ .|++||+-+... -.| ......|+... .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I~G--V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------IEG--VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------cCc--eEEeecccCCHhHHHHHHHH
Confidence 578999999999998877643 289999876311 111 11222233221 1
Q ss_pred CCCCCeeEEEeccc----cccccCCh------HHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRC----RINWTRDD------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~----l~hw~~d~------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|..+..|+|+|... -+|=.++. -.+|.-..++|||||.|+.--+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 44567899998763 12211111 1455667889999999987754
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.12 E-value=3.2 Score=42.18 Aligned_cols=110 Identities=12% Similarity=0.203 Sum_probs=61.6
Q ss_pred eeeccCCCcc-ccccHHHHHHHHHHhcccccc--CCCCCEEEEECCCCchh----HHHhccCCeEEEeCCccchHHHHHH
Q 008262 241 KFKFPGGGTQ-FIHGADQYLDQIAKMVPDITW--GHHIRVVMDAGCGVASF----GAYLLPRNVITMSIAPKDVHENQIQ 313 (572)
Q Consensus 241 ~~~Fpggg~~-f~~g~~~~i~~L~~~L~~i~~--~~~~~~VLDIGCGtG~~----a~~L~~~~V~gvDiSp~dl~~a~~~ 313 (572)
++.||.|-.- .-.|...|+..|+++|..-.. .++.-++||||.|.--. +...-.-+.+|.|+++..++.++..
T Consensus 42 ~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 42 YWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred EecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHH
Confidence 3456654211 124677889999988863211 23456799998876532 2222222788999998877766654
Q ss_pred HHHHcCCCcEE---EeccccC-CC---CCCCCeeEEEecccccc
Q 008262 314 FALERGAPAMV---AAFATRR-LP---YPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 314 ~A~~rg~~~~~---~~~d~e~-LP---fp~~sFDlI~ss~~l~h 350 (572)
.....++...+ ..-+... ++ -..+.||++.|+.-++.
T Consensus 122 i~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 122 ISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 44432332211 1111111 11 12678999999976543
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=81.83 E-value=17 Score=39.34 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCc----hhHHHhccC-------CeEEEeC----CccchHHH---HHHHHHHcCCCcEEEec---cccC
Q 008262 273 HHIRVVMDAGCGVA----SFGAYLLPR-------NVITMSI----APKDVHEN---QIQFALERGAPAMVAAF---ATRR 331 (572)
Q Consensus 273 ~~~~~VLDIGCGtG----~~a~~L~~~-------~V~gvDi----Sp~dl~~a---~~~~A~~rg~~~~~~~~---d~e~ 331 (572)
.+.-.|+|+|.|.| .+...|+.+ +||+++. +...+.+. -.++|+..|++..+... ..+.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 45567999999999 566677765 6999988 44334333 33677777887655542 2222
Q ss_pred C-----CCCCCCeeEEEeccccccccCC------hHHHHHHHHHhccCCeEEEEE
Q 008262 332 L-----PYPSQAFDLIHCSRCRINWTRD------DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 L-----Pfp~~sFDlI~ss~~l~hw~~d------~~~~L~ei~RvLKPGG~lv~s 375 (572)
+ ...++..=+|-|...++|...+ +...+....|.|+|.-..+..
T Consensus 189 l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2 2233444444455445555422 234566778899999666554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.76 E-value=5.4 Score=42.63 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=58.3
Q ss_pred CCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-----CCCCC-CCeeEEE
Q 008262 275 IRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----LPYPS-QAFDLIH 343 (572)
Q Consensus 275 ~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-----LPfp~-~sFDlI~ 343 (572)
..+|+=+|||+ |.++..+++. .|+.+|.++. +.+.|++.+....+.....+. +.... ..||+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~-----Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE-----RLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-----HHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 34899999996 7776555554 7888888765 446776643222222111110 11122 3699998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-... ...++.++.+++||||.+++...
T Consensus 244 e~~G-------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 244 EAVG-------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ECCC-------CHHHHHHHHHHhcCCCEEEEEec
Confidence 4322 25689999999999999999874
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=81.34 E-value=4.8 Score=41.45 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI~ 343 (572)
....+||..|+| .|..+..++.. +|++++.++.. .+.+++.+....+...+ ... ....+.+|+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~-----~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEK-----LELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHH-----HHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEE
Confidence 345788888876 46666666654 67777666532 24455555433222111 010 12346799998
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ....+.++.+.|+++|.++...
T Consensus 238 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 238 DFVG-------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ECCC-------CHHHHHHHHHHhhcCCEEEEEC
Confidence 5321 1457889999999999998764
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.50 E-value=19 Score=37.18 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCEEEEECCCCchhHHHhccC--------CeEEEeCCccchHHHHHHHHHHcC-CCcEEEecc----ccCCCCCCCCeeE
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERG-APAMVAAFA----TRRLPYPSQAFDL 341 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--------~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~d----~e~LPfp~~sFDl 341 (572)
..+.+|+|.|+-.=++.|++. ..+.+|++..-+.....+...+.. ++..-...+ ...+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 678999999998666655543 688999999777666655555442 222111112 12233 222222
Q ss_pred -EEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 342 -IHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 -I~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
++....+..+.++. ..+|.++...|+||-+|++-.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22233445554544 589999999999999999985
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 572 | |||
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-07 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 9e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 3e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 7e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 8e-06 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 8e-06 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 1e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 3e-05 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 4e-05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 5e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 8e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 1e-04 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 2e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 3e-04 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 3e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 3e-04 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 3e-04 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 6e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 7e-04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 8e-04 |
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 6e-08
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 25/151 (16%)
Query: 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQ 311
A ++ KM+PD + V+D GCG Y + V+ + D+ E
Sbjct: 29 AAGEWHELKKMLPDFN----QKTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERM 79
Query: 312 IQFALERGAPAMVAAFA--TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAG 369
+ A + +V + A++++ S +++ + +V L++
Sbjct: 80 LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSS 138
Query: 370 GYF----------AWAAQPVYKHEEAQEEHW 390
G F A Q Y E + HW
Sbjct: 139 GSFIFSVEHPVFTADGRQDWYTDETGNKLHW 169
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 250 QFIHGADQYLDQ--IAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PRNVITMSIAP 304
+ I G D + + M+P++ G ++D GCG F + V+ +
Sbjct: 21 RSIEGLDGAAEWPALRAMLPEVG-GLR---IVDLGCGFGWFCRWAHEHGASYVLGL---- 72
Query: 305 KDVHENQIQFALERGAPAMVA---AFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLE 361
D+ E + A G + A + L P +FDL + S +++ D L
Sbjct: 73 -DLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLA-LHYVEDVARLFRT 129
Query: 362 VNRMLRAGGYFAWAAQ-PVYKHEEAQEEHWKE 392
V++ L GG+F ++ + P+Y
Sbjct: 130 VHQALSPGGHFVFSTEHPIYMAPARPGWAIDA 161
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 9e-07
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 278 VMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335
V+D G G + +L R V+ + D + ++ A E+G +V A A LP+P
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKA-EDLPFP 111
Query: 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390
S AF+ + +++ + E+ R+L G Y + E
Sbjct: 112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD 166
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMV-AAFAT---RRLP 333
V+D CGV F L + + D+ E+ I+ A E F R+L
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLS 98
Query: 334 YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 392
+ + FD + +++ + + EV R+L+ G F + + +E
Sbjct: 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVV 158
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 3e-06
Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 18/156 (11%)
Query: 228 DKGGQNWISKEKDKFKFPGGGTQFIHGAD-QYLDQIAKMVPDITWGHHIRVVMDAGCGVA 286
K + W + GG +H D + +P GH +D G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGGMDH-VHDVDIEGSRNFIASLP----GHGTSRALDCGAGIG 105
Query: 287 SFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RRLPYPSQAFD 340
LL + + + ++ ++ A A V F P +D
Sbjct: 106 RITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160
Query: 341 LIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFAWA 375
LI I T D + + L GY +
Sbjct: 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 277 VVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 336
V++D GCG + YLL I D++ ++ E+ + + P
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCI---DINVIALKEVKEKFDSVITLSDP---KEIPD 73
Query: 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA---WAAQ-----PVYKHEEAQEE 388
+ D I + + D ++ EV R+L+ G W + P +++
Sbjct: 74 NSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKD 132
Query: 389 HWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCY 423
+ + + + + K+ T+ +
Sbjct: 133 YMGWFSNFVVEKRFNPTPYH-FGLVLKRKTSEGHH 166
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 5/125 (4%)
Query: 276 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335
V+ D G G + L + + ++ + Q A+ +A L P
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN-LALP 91
Query: 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395
++ D + I+ E+ R++R G +++ + +
Sbjct: 92 DKSVDGVISILA-IHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
Query: 396 LTTRL 400
R
Sbjct: 151 DALRF 155
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-06
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 33/179 (18%)
Query: 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPK------- 305
G+ + + + ++T + D GCG G T+ +A
Sbjct: 28 PGSPEATRKAVSFINELTDDAK---IADIGCGT---GG-------QTLFLADYVKGQITG 74
Query: 306 -DVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRDDGIL 358
D+ + I+ E A A LP+ ++ DLI S I +
Sbjct: 75 IDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIW-SEGAI-YNIGFERG 132
Query: 359 LLEVNRMLRAGGYFA---WAAQPVYKHEEAQEEHWKEMLDLTT-RLCWELVKKEGYIAI 413
+ E ++ L+ GG+ A + + E ++ +++ C + +++ GY
Sbjct: 133 MNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPT 191
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 37/193 (19%)
Query: 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPK-------- 305
G+ + + + ++T + D GCG G TM +A
Sbjct: 29 GSPEVTLKALSFIDNLTEKSL---IADIGCGT---GG-------QTMVLAGHVTGQVTGL 75
Query: 306 DVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRDDGILL 359
D I + + T LP+ ++ DLI N + G L
Sbjct: 76 DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERG--L 133
Query: 360 LEVNRMLRAGGYFA--WAAQPVYKHEEAQEEHWK----EMLDLTTRLCWELVKKEGYIAI 413
E + L+ GGY A + + + W E+ + ++ + K GY+ +
Sbjct: 134 NEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQV--AKIHKAGYLPV 191
Query: 414 WKKPTNNSCYLNR 426
+C+ +
Sbjct: 192 ATFILPENCWTDH 204
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 278 VMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRL 332
V+D GCG L + + D+ E IQ ERG + + L
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGV-----DISEVMIQKGKERGEGPDLSFIKGDLSS-L 110
Query: 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 392
P+ ++ F+ I + WT + L E+ R+L++ GY A + + +E +
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAI--LGPTAKPRENSYPR 167
Query: 393 MLD 395
+
Sbjct: 168 LYG 170
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER--GAPAMVAAFATRRLPYP 335
++D G G + +L + + ++ A + L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVTFHHGTI--TDLSDS 99
Query: 336 SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFA 373
+ + + I+ + L+ + + GG
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 13/137 (9%)
Query: 278 VMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA-FAT---R 330
V+D G G + + ++ + Q++ A + R
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISDLQLKKAENFSRENNFKLNISKGDIR 81
Query: 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389
+LP+ ++ ++ + ++D + E+ R+L+ GG + E
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEK 141
Query: 390 WKEMLDLTTRLCWELVK 406
E L +++
Sbjct: 142 IGEGEFLQLERGEKVIH 158
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS 336
++DAGCG G YL + + D+ I +A + A V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT---DLDPILIDYAKQDFPEARWVVGDL-SVDQISE 105
Query: 337 QAFDLIHCSRCRINWTRDDGIL--LLEVNRMLRAGGYF 372
FDLI + + + +DG L ++R L A G
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRA 143
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVH 308
I+ + ++L + + P+ T +D G G+ LL R V + I +
Sbjct: 60 INSSRKFLQRFLREGPNKT---GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV 116
Query: 309 ENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNRMLR 367
+ + E + ++D+I + T L LR
Sbjct: 117 QAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 176
Query: 368 AGGYFA 373
G
Sbjct: 177 PNGIIV 182
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 23/143 (16%)
Query: 242 FKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NV- 297
++ G D+ D++ ++ D+ G V+D GCG+ L V
Sbjct: 33 WEDAGADVSVDDATDRLTDEMIALL-DVRSGDR---VLDVGCGIGKPAVRLATARDVRVT 88
Query: 298 -ITMSIAPKDVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRCRIN 350
I++S Q+ A R A +A T LP+ +FD + +
Sbjct: 89 GISIS-------RPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHH 141
Query: 351 WTRDDGILLLEVNRMLRAGGYFA 373
D G L E+ R+LR GG A
Sbjct: 142 M-PDRGRALREMARVLRPGGTVA 163
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 20/166 (12%)
Query: 249 TQFIHG-----ADQYLDQIAKMVPDITWGHHIR---VVMDAGCGVASFGAYLLPRNVITM 300
T+++HG A + +Q + + V++AGCG+ + +L +N
Sbjct: 4 TEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQ-TVILAKNNPDA 62
Query: 301 SIAPKDVHENQIQFALERGAPAMVAAFATRR-----LPYPSQAFDLIHCSRCRINWTRDD 355
I D+ ++ A E + + LP+ +FD I + +
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV-LEHLQSP 121
Query: 356 GILLLEVNRMLRAGGYFA-----WAAQPVYKHEEAQEEHWKEMLDL 396
L + ++L+ GG + + + E W ++ +
Sbjct: 122 EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRV 167
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAF---ATRRLPY 334
V+D GCG L R + + + D + A GA + A
Sbjct: 56 VLDLGCGEGWLLRALADRGIEAVGV---DGDRTLVDAARAAGAGEVHLASYAQLAEAKVP 112
Query: 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ-PVYKHEEAQEEHWKE 392
+ +DLI C+ + D LL + +L GG P + ++ W+E
Sbjct: 113 VGKDYDLI-CANFALLHQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWRE 169
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS 336
+++ G G + L + + + + R A V A+ LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEA-LPFPG 93
Query: 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373
++FD++ + + D +LLE R+LR GG
Sbjct: 94 ESFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 276 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 335
V+D GCG + + DV + I+ A +R ++ RLP+
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRYPQVTFCVASSHRLPFS 145
Query: 336 SQAFDLIHCSRCRIN------WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388
+ D I + G ++ V+ H E+
Sbjct: 146 DTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQ 204
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPS 336
+++ GCG +L + D A R G P F +L
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLF--HQLD-AI 100
Query: 337 QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFA 373
A+D + C ++ RD+ +L + R L+ GG F
Sbjct: 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 27/168 (16%)
Query: 242 FKFPGGGTQFIHGADQYLDQIAKMV---PDITWGHHIRVVMDAGCGVASFGAYLLPR--- 295
+K P + + + + +A + + +D G G +L+ +
Sbjct: 50 YKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAK---GLDLGAGYGGAARFLVRKFGV 106
Query: 296 NV--ITMSIAPKDVHENQIQFALERGAPAMVAAFAT------RRLPYPSQAFDLIHCSRC 347
++ + ++ Q + E A +A T +P ++D I S+
Sbjct: 107 SIDCLNIA-------PVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI-WSQD 158
Query: 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395
+ D + E R+L+ G A K + + + +LD
Sbjct: 159 AFLHSPDKLKVFQECARVLKPRGVMAITD--PMKEDGIDKSSIQPILD 204
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 26/202 (12%)
Query: 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALE 317
Y KM+ + G +V D GCG + + I D+ I+ A
Sbjct: 21 YPSDFYKMIDEYHDGERKLLV-DVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79
Query: 318 RGAPAMVAAFATR-------------RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR 364
+ Q D+I C +W D
Sbjct: 80 IKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVEC-AHWF-DFEKFQRSAYA 137
Query: 365 MLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYL 424
LR G A ++ + + + E DL + + Y W++P L
Sbjct: 138 NLRKDGTIA-----IWGYADPIFPDYPEFDDLMIEVPYGKQGLGPY---WEQPGR--SRL 187
Query: 425 NREAGTIPPLCDPDDNPDNVWY 446
+ + ++
Sbjct: 188 RNMLKDSHLDPELFHDIQVSYF 209
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 26/136 (19%)
Query: 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFA 315
+ + + ++DAGCG R V ++++ Q F
Sbjct: 105 AEFLMDHLGQAGPDDT---LVDAGCGRGGSMVMAHRRFGSRVEGVTLSA-----AQADFG 156
Query: 316 LERGAPAMVAAFAT------RRLPYPSQAFDLIHC--SRCRINWTRDDGILLLEVNRMLR 367
R + P+ A S ++ L E +R L+
Sbjct: 157 NRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHD----LFSEHSRFLK 212
Query: 368 AGGYFA---WAAQPVY 380
GG + P Y
Sbjct: 213 VGGRYVTITGCWNPRY 228
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYP- 335
V++AGCG A P+ + D ++ A A + LP
Sbjct: 52 VLEAGCGHGPDAARFGPQAARWAAY---DFSPELLKLARANAPHADVYEWNGKGELPAGL 108
Query: 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395
F LI R + +L + + +F +Y E L
Sbjct: 109 GAPFGLIVSRRGPTSV-------ILRLPELAAPDAHF------LYVGPRLNVPEVPERLA 155
Query: 396 LTTRLCWELVKKEGYIAIWKKPT 418
W++V ++ + PT
Sbjct: 156 AVG---WDIVAEDHVSVLAHAPT 175
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 18/146 (12%)
Query: 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331
D GCG + L R + + D ++ ++ A +R
Sbjct: 35 LNGYDLGCGPGNSTELLTDRYGVNVITGI-----DSDDDMLEKAADRLPNTNFGKADLAT 89
Query: 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW-------AAQPVYKHEE 384
P+Q DL++ + W D +L ++ L +GG A + HE
Sbjct: 90 WK-PAQKADLLYANAV-FQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHET 147
Query: 385 AQEEHWKEMLDLTTRLCWELVKKEGY 410
A WK+ L Y
Sbjct: 148 ADGGPWKDAFSGGGLRRKPLPPPSDY 173
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 35/158 (22%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
V+D GC + GA + I + + A E+ ++ T +PY +
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIETMDMPYEEE 92
Query: 338 AFDLIHCS--------------RCRINWTRDDGILLLEV-NRMLRA------GGYFAWAA 376
FD + + + + + +G++L + N + G + +
Sbjct: 93 QFDCVIFGDVLEHLFDPWAVIEKVK-PYIKQNGVILASIPNVSHISVLAPLLAGNWTYTE 151
Query: 377 QPVYKHEEAQEEHWK-----EMLDLTTRLCWELVKKEG 409
+ H + EML + + + + K +
Sbjct: 152 YGLLDK-----THIRFFTFNEMLRMFLKAGYSISKVDR 184
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 17/151 (11%), Positives = 39/151 (25%), Gaps = 18/151 (11%)
Query: 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKD 306
F+ D + + V++ G + +L V + D
Sbjct: 24 ATFVPYMDSAAPAALERLRAGNIRGD---VLELASGTGYWTRHLSGLADRVTAL-----D 75
Query: 307 VHENQIQFALERGAPAMVAAFAT-RRLPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNR 364
I A G + P + +D + + + D V
Sbjct: 76 GSAEMIAEAGRHGLDNVEFRQQDLFDWT-PDRQWDAVFFAHWLAHVPDDRFEAFWESVRS 134
Query: 365 MLRAGGYF-----AWAAQPVYKHEEAQEEHW 390
+ GG + + + ++++ E
Sbjct: 135 AVAPGGVVEFVDVTDHERRLEQQDDSEPEVA 165
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 278 VMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT----- 329
+D G G + L + ++ + D ++ + AL+ A A +
Sbjct: 47 CIDIGSGPGALSIALAKQSDFSIRAL-----DFSKHMNEIALKNIADANLNDRIQIVQGD 101
Query: 330 -RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 373
+P DLI SR + + D E+ R+L++GG
Sbjct: 102 VHNIPIEDNYADLI-VSRGSVFFWEDVATAFREIYRILKSGGKTY 145
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 572 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.61 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.61 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.59 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.58 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.57 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.56 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.52 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.52 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.52 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.51 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.51 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.5 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.5 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.5 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.5 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.49 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.48 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.48 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.47 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.47 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.47 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.46 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.46 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.46 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.46 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.45 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.45 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.44 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.44 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.43 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.43 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.42 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.42 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.42 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.42 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.42 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.41 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.41 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.41 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.41 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.41 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.41 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.4 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.4 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.4 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.39 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.38 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.38 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.37 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.37 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.37 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.37 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.36 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.36 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.35 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.35 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.33 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.33 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.33 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.33 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.32 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.31 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.3 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.3 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.29 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.28 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.28 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.28 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.27 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.27 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.27 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.26 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.25 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.25 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.24 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.23 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.23 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.22 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.22 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.22 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.22 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.21 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.21 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.2 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.2 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.2 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.19 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.19 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.18 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.18 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.18 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.18 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.18 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.17 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.17 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.16 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.16 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.15 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.15 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.14 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.14 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.14 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.14 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.14 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.13 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.12 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.12 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.12 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.11 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.11 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.11 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.11 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.11 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.1 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.1 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.09 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.09 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.09 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.08 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.06 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.06 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.06 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.06 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.06 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.06 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.05 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.05 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.05 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.04 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.04 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.03 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.03 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.03 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.02 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.02 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.01 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.01 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.01 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.01 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.0 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.0 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.0 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.0 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.99 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.99 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.99 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.98 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.98 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.98 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.98 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.97 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.97 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.97 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.97 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.96 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.95 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.95 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.95 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.95 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.94 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.94 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.94 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.94 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.94 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.93 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.92 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.91 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.91 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.91 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.91 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.9 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.9 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.89 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.89 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.88 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.88 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.87 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.87 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.87 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.87 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.87 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.87 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.86 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.86 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.85 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.85 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.83 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.82 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.8 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.8 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.8 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.8 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.79 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.77 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.77 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.76 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.75 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.74 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.73 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.73 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.72 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.71 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.7 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.69 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.69 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.68 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.68 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.67 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.67 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.66 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.66 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.66 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.64 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.63 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.63 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.61 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.61 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.58 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.57 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.57 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.55 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.54 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.54 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.49 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.46 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.44 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.42 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.41 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.41 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.39 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.38 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.38 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.32 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.31 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.23 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.17 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.15 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.1 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.09 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.02 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.01 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.0 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.99 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.98 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.94 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.84 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.84 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.81 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.8 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.78 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.74 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.67 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.66 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.65 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.65 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.61 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.55 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.53 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.49 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.43 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.27 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.26 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.25 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.21 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.17 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.16 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.97 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.86 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.44 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.35 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.32 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.93 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.75 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.56 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 94.73 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.23 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.91 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 89.62 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 87.68 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 87.38 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 87.04 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 87.03 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 86.74 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 85.89 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 85.75 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 85.6 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 85.47 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 85.07 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 84.98 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 84.91 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 84.39 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 84.38 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 83.83 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.69 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 83.42 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 83.14 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 83.09 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 83.02 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 82.23 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 82.05 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 81.69 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 81.07 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 80.92 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 80.72 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 80.47 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 80.43 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=149.63 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=109.1
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp 335 (572)
++.+.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+.. .+...+.. ..+...|.+.+|++
T Consensus 26 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQIAA----LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHHT----CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHhC----CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEEecHHhCCCC
Confidence 445555554 246789999999999999999876 89999999998866653 33344543 44556688899999
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEee
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWK 415 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~ 415 (572)
+++||+|+|+.+++|+ +++..+|.++.|+|||||+|++.+. .......+...+..++... ..... ..
T Consensus 101 ~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~--~~ 167 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN-SAPENDAFDVFYNYVEKER---------DYSHH--RA 167 (260)
T ss_dssp TTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE-EBCSSHHHHHHHHHHHHHH---------CTTCC--CC
T ss_pred CCCEEEEEEhhhhHhc-CCHHHHHHHHHHHcCCCCEEEEEEc-CCCCCHHHHHHHHHHHHhc---------Ccccc--CC
Confidence 9999999999886666 8889999999999999999999853 2222233333222222111 00111 11
Q ss_pred ccchhHHHHHHhcCCCCCccC
Q 008262 416 KPTNNSCYLNREAGTIPPLCD 436 (572)
Q Consensus 416 kpl~~~c~ll~~aGF~~p~cd 436 (572)
....+...+++++||....+.
T Consensus 168 ~~~~~~~~~l~~aGf~~~~~~ 188 (260)
T 1vl5_A 168 WKKSDWLKMLEEAGFELEELH 188 (260)
T ss_dssp CBHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEEE
Confidence 223456678889999765443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-16 Score=155.23 Aligned_cols=120 Identities=17% Similarity=0.250 Sum_probs=90.3
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
+..+.|.+..+ ...+|||||||+|.++..|++. +|+|+|+|+.|+. .|++ .....+...+.+.+|+
T Consensus 28 ~l~~~l~~~~~------~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~-----~a~~-~~~v~~~~~~~e~~~~ 95 (257)
T 4hg2_A 28 ALFRWLGEVAP------ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIR-----QALR-HPRVTYAVAPAEDTGL 95 (257)
T ss_dssp HHHHHHHHHSS------CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHH-----TCCC-CTTEEEEECCTTCCCC
T ss_pred HHHHHHHHhcC------CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhh-----hhhh-cCCceeehhhhhhhcc
Confidence 34445554443 3468999999999999999887 8999999998773 3322 2334566668899999
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHH
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 390 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w 390 (572)
++++||+|+|..+ +||. +...++.|+.|+|||||.|++.+........++....
T Consensus 96 ~~~sfD~v~~~~~-~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~ 149 (257)
T 4hg2_A 96 PPASVDVAIAAQA-MHWF-DLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVV 149 (257)
T ss_dssp CSSCEEEEEECSC-CTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHH
T ss_pred cCCcccEEEEeee-hhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHH
Confidence 9999999999877 5774 6789999999999999999988653333344444433
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=147.31 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=105.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+..+|||||||+|.++..+++. +|+++|+++.++..+.... ...+.. ..+...|.+.+++++++||+|+|..+++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 98 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFA-QEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 98 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHH-HHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence 46789999999999999999876 8999999999886655433 334443 4455667888999999999999998877
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhcC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAG 429 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aG 429 (572)
|+ .+...+|.++.|+|||||++++.+.... ...++...+..++.... ..+. ......+...+++++|
T Consensus 99 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~ll~~aG 165 (239)
T 1xxl_A 99 HF-SDVRKAVREVARVLKQDGRFLLVDHYAP-EDPVLDEFVNHLNRLRD---------PSHV--RESSLSEWQAMFSANQ 165 (239)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEECBC-SSHHHHHHHHHHHHHHC---------TTCC--CCCBHHHHHHHHHHTT
T ss_pred hc-cCHHHHHHHHHHHcCCCcEEEEEEcCCC-CChhHHHHHHHHHHhcc---------cccc--CCCCHHHHHHHHHHCC
Confidence 77 7889999999999999999999864222 22333333322221110 0111 1123345677888999
Q ss_pred CCCCcc
Q 008262 430 TIPPLC 435 (572)
Q Consensus 430 F~~p~c 435 (572)
|....+
T Consensus 166 f~~~~~ 171 (239)
T 1xxl_A 166 LAYQDI 171 (239)
T ss_dssp EEEEEE
T ss_pred CcEEEE
Confidence 976544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=147.95 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
.++.+|||||||+|.++..|+++ +|+|+|+|+.|+..++.... ..+. ...+...|+..+|++ .||+|+|
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~-~~~~~~~v~~~~~D~~~~~~~--~~d~v~~ 145 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID-AYKAPTPVDVIEGDIRDIAIE--NASMVVL 145 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHH-TSCCSSCEEEEESCTTTCCCC--SEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHH-hhccCceEEEeeccccccccc--cccccee
Confidence 56789999999999998888754 69999999999976664433 2332 344556678888774 6999999
Q ss_pred ccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+++++ ++. ..+|++++|+|||||.|++++.
T Consensus 146 ~~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 146 NFTLQFL-EPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeeeec-CchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 8875555 433 4789999999999999999874
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-15 Score=144.06 Aligned_cols=185 Identities=16% Similarity=0.135 Sum_probs=118.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
.....+.+.+. ..+..+|||||||+|.++..+++. +|+++|+++.++.. ++++.....+...|.+.+
T Consensus 20 ~~~~~l~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~~~~~~d~~~~ 90 (259)
T 2p35_A 20 RPARDLLAQVP----LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEK-----AADRLPNTNFGKADLATW 90 (259)
T ss_dssp HHHHHHHTTCC----CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHH-----HHHHSTTSEEEECCTTTC
T ss_pred HHHHHHHHhcC----CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHhCCCcEEEECChhhc
Confidence 34455666554 245678999999999998888754 89999999987744 333333445566678888
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccC-cE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEG-YI 411 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g-~i 411 (572)
+ ++++||+|+|+.+++ +..+...+|.++.|+|||||+++++++ ...... ....+..+.. ...|....... ..
T Consensus 91 ~-~~~~fD~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~ 163 (259)
T 2p35_A 91 K-PAQKADLLYANAVFQ-WVPDHLAVLSQLMDQLESGGVLAVQMP-DNLQEP-THIAMHETAD---GGPWKDAFSGGGLR 163 (259)
T ss_dssp C-CSSCEEEEEEESCGG-GSTTHHHHHHHHGGGEEEEEEEEEEEE-CCTTSH-HHHHHHHHHH---HSTTGGGC------
T ss_pred C-ccCCcCEEEEeCchh-hCCCHHHHHHHHHHhcCCCeEEEEEeC-CCCCcH-HHHHHHHHhc---CcchHHHhcccccc
Confidence 8 788999999987744 448889999999999999999999974 222211 1111222211 11232221110 00
Q ss_pred EEeeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcccCC
Q 008262 412 AIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPENG 460 (572)
Q Consensus 412 ~iw~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~~~~ 460 (572)
........+...+++++||..... .......|.+...++..++..|
T Consensus 164 ~~~~~~~~~~~~~l~~aGf~v~~~---~~~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKSSRVDVW---HTVYNHPMKDADSIVEWVKGTG 209 (259)
T ss_dssp -CCCCCHHHHHHHHGGGEEEEEEE---EEEEEEEESCHHHHHHHHTTTT
T ss_pred ccCCCCHHHHHHHHHhcCCceEEE---EEEeeeccCCchHHhhhhhcCc
Confidence 001122334677889999964332 2344567789999999998444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-14 Score=141.90 Aligned_cols=122 Identities=24% Similarity=0.333 Sum_probs=95.4
Q ss_pred cccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEE
Q 008262 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMV 324 (572)
Q Consensus 250 ~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~ 324 (572)
.+........+.+.+.+. ..+..+|||||||+|.++..+++. +|+++|+++.++..+.. .+...+.. ..+
T Consensus 41 ~~~~~~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~ 115 (273)
T 3bus_A 41 SVDDATDRLTDEMIALLD----VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANA-RATAAGLANRVTF 115 (273)
T ss_dssp CHHHHHHHHHHHHHHHSC----CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEE
T ss_pred CHHHHHHHHHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceEE
Confidence 334455666677777665 246789999999999999888753 89999999988865543 33334442 445
Q ss_pred EeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 325 ~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...|...+|+++++||+|+|..+++|+ .+...+|.++.|+|||||+++++++
T Consensus 116 ~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 116 SYADAMDLPFEDASFDAVWALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCTTTS-SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EECccccCCCCCCCccEEEEechhhhC-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 566788899999999999999886666 7889999999999999999999874
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=144.21 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=89.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
.+++.+.+.+..+ .+..+|||||||+|.++..|++. +|+|+|+++.++..++.. +...+....+...|...
T Consensus 8 ~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 8 DYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATE 83 (284)
T ss_dssp HHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTT
T ss_pred HHHHHHHHHHhcc---CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhh
Confidence 4455555555432 46789999999999999999864 699999999888655433 22333344566667888
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++ ++||+|+|..+++|+ .+...++++++|+|||||++++..+
T Consensus 84 ~~~~-~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 84 IELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp CCCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCcC-CCeeEEEECChhhcC-CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 8884 799999999886666 8889999999999999999999874
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-14 Score=132.61 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~ 329 (572)
.....+.+.+.+. .+..+|||||||+|.++..|++. +|+++|+++.++..+..... ..+. ...+...|.
T Consensus 29 ~~~~~~~~~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~d~ 102 (219)
T 3dlc_A 29 YPIIAENIINRFG-----ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA-DANLNDRIQIVQGDV 102 (219)
T ss_dssp HHHHHHHHHHHHC-----CCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECBT
T ss_pred cHHHHHHHHHhcC-----CCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-hccccCceEEEEcCH
Confidence 4455556655554 12239999999999999988874 89999999988866654333 3343 244566678
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+++++++||+|+|..+++|+ .+...+|.++.|+|||||.+++++.
T Consensus 103 ~~~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 103 HNIPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp TBCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHCCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEec
Confidence 8899999999999999887777 8889999999999999999999873
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=137.72 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=85.9
Q ss_pred HHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCC
Q 008262 261 QIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337 (572)
Q Consensus 261 ~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~ 337 (572)
.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.++..+..... .....+...|.+.++++++
T Consensus 35 ~l~~~~~----~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~ 107 (253)
T 3g5l_A 35 ELKKMLP----DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPD 107 (253)
T ss_dssp HHHTTCC----CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTT
T ss_pred HHHHhhh----ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCC
Confidence 4444544 246789999999999999998876 79999999987744332211 2334566667888999899
Q ss_pred CeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+||+|+|..+++|+ .+...+|+++.|+|||||.++++..
T Consensus 108 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 108 AYNVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp CEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeEEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999999886666 8889999999999999999999863
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=143.71 Aligned_cols=170 Identities=9% Similarity=0.055 Sum_probs=108.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||||||+|.++..+++. +|+|+|+++.++..+ +++.....+...|.+.+++ +++||+|+|+.+++|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a-----~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~ 129 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKA-----RQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHW 129 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHH-----HHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGG
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHH-----HhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhh
Confidence 45679999999999999988765 899999999887443 3332233455567888887 589999999877554
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhcCC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGT 430 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aGF 430 (572)
..++..+|.++.|+|||||++++.++ ......++...+..... ...|......... ......+...+++++||
T Consensus 130 -~~d~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~l~~aGf 202 (279)
T 3ccf_A 130 -VKEPEAAIASIHQALKSGGRFVAEFG-GKGNIKYILEALYNALE---TLGIHNPQALNPW--YFPSIGEYVNILEKQGF 202 (279)
T ss_dssp -CSCHHHHHHHHHHHEEEEEEEEEEEE-CTTTTHHHHHHHHHHHH---HHTCCCGGGGCCC--CCCCHHHHHHHHHHHTE
T ss_pred -CcCHHHHHHHHHHhcCCCcEEEEEec-CCcchHHHHHHHHHHHH---hcCCccccCcCce--eCCCHHHHHHHHHHcCC
Confidence 48899999999999999999999874 44444444444432221 1122111100000 11123346678889999
Q ss_pred CCCccCCCCCCccccCC-CHHHHHhhcc
Q 008262 431 IPPLCDPDDNPDNVWYV-DLKACITRLP 457 (572)
Q Consensus 431 ~~p~cd~~~~~~~~wY~-~l~~~L~~L~ 457 (572)
....+. .......+. +...++..++
T Consensus 203 ~~~~~~--~~~~~~~~~~~~~~~~~~l~ 228 (279)
T 3ccf_A 203 DVTYAA--LFNRPTTLAEGEFGMANWIQ 228 (279)
T ss_dssp EEEEEE--EEECCEECSSGGGHHHHHHH
T ss_pred EEEEEE--EecccccccCCHHHHHHHHH
Confidence 765443 222333343 3444444443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-14 Score=138.65 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d 328 (572)
.....++.+.+.+. ..+..+|||||||+|.++..|++. +|+|+|+++.++..+.. .+...++. ..+...|
T Consensus 20 ~~~~~~~~l~~~~~----~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~~d 94 (256)
T 1nkv_A 20 FTEEKYATLGRVLR----MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIHND 94 (256)
T ss_dssp CCHHHHHHHHHHTC----CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESC
T ss_pred CCHHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECC
Confidence 34556677777665 246689999999999999888754 89999999998866653 33444543 4556667
Q ss_pred ccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+.+++ +++||+|+|..+++|+ .+...+|.++.|+|||||+++++++
T Consensus 95 ~~~~~~-~~~fD~V~~~~~~~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 95 AAGYVA-NEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CTTCCC-SSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHhCCc-CCCCCEEEECCChHhc-CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 888887 7899999998887666 6889999999999999999999863
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=139.01 Aligned_cols=102 Identities=18% Similarity=0.316 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.+..+|||||||+|.++..+++. +|+++|+++.++..+... +...+.. ..+...|...+++++++||+|+|+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN-TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 46789999999999999888754 799999999888665543 3334443 44556678889999999999999988
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.|+ .++..+|.++.|+|||||++++..
T Consensus 115 l~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHL-QSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 6666 888999999999999999999986
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=133.50 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=98.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||||||+|.++..|++. +|+|+|+++.++..+ +++.. ...+...|...++++ ++||+|+|..+++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a-----~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIA-----KEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHH-----HHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHH-----HHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 5679999999999999999876 899999999877443 33322 334556678888888 99999999988666
Q ss_pred ccCChHH--HHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhc
Q 008262 351 WTRDDGI--LLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREA 428 (572)
Q Consensus 351 w~~d~~~--~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~a 428 (572)
+ .+... +|.++.|+|||||.++++++ ..............+... .+....... ...+..+..+...+++++
T Consensus 119 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 119 L-TDDEKNVAIAKYSQLLNKGGKIVFADT-IFADQDAYDKTVEAAKQR----GFHQLANDL-QTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp S-CHHHHHHHHHHHHHHSCTTCEEEEEEE-CBSSHHHHHHHHHHHHHT----TCHHHHHHH-HHSCCCBHHHHHHHHHHT
T ss_pred C-ChHHHHHHHHHHHHhcCCCCEEEEEec-cccChHHHHHHHHHHHhC----CCccchhhc-chhhcCCHHHHHHHHHHC
Confidence 6 66655 99999999999999999974 444444433332222111 111000000 000111334567788999
Q ss_pred CCCCCcc
Q 008262 429 GTIPPLC 435 (572)
Q Consensus 429 GF~~p~c 435 (572)
||.....
T Consensus 192 Gf~v~~~ 198 (220)
T 3hnr_A 192 GFHVTFT 198 (220)
T ss_dssp TEEEEEE
T ss_pred CCEEEEe
Confidence 9965433
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=135.52 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||||||+|.++..|++. +|+|+|+++.++..+ +++.. ...+...+.+.+ +++++||+|+|..+++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a-----~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHA-----QGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEH 115 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHH-----HHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHH-----HHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHh
Confidence 4568999999999999999877 899999999877443 33322 344555567776 46789999999998777
Q ss_pred ccCChHHHHHHHH-HhccCCeEEEEEECCCCCCH
Q 008262 351 WTRDDGILLLEVN-RMLRAGGYFAWAAQPVYKHE 383 (572)
Q Consensus 351 w~~d~~~~L~ei~-RvLKPGG~lv~st~P~~~tl 383 (572)
+ .++..+|+++. |+|||||+++++++ .....
T Consensus 116 ~-~~~~~~l~~~~~~~LkpgG~l~i~~~-~~~~~ 147 (250)
T 2p7i_A 116 I-DDPVALLKRINDDWLAEGGRLFLVCP-NANAV 147 (250)
T ss_dssp C-SSHHHHHHHHHHTTEEEEEEEEEEEE-CTTCH
T ss_pred h-cCHHHHHHHHHHHhcCCCCEEEEEcC-ChHHH
Confidence 7 78899999999 99999999999974 44443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=137.43 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~ 329 (572)
.......+.+.+.. ..+..+|||||||+|.++..+++. +|+|+|+++.++..+.. .+...++. ..+...|.
T Consensus 30 ~~~~~~~~l~~l~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 30 SPEVTLKALSFIDN---LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp CHHHHHHHHTTCCC---CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCT
T ss_pred CHHHHHHHHHhccc---CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHH-HHHHcCCCcCcEEEEcCh
Confidence 34455566666652 246789999999999999999876 79999999998866654 33444543 45666688
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+++++++||+|+|..+++|+ +...+|+++.++|||||++++++.
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8899989999999999887777 789999999999999999999863
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=140.32 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=95.0
Q ss_pred cccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEe
Q 008262 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAA 326 (572)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~ 326 (572)
........+.+.+.++......+..+|||||||+|.++..|++. +|+|+|+++.++..+.... ...+. ...+..
T Consensus 60 ~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~~ 138 (297)
T 2o57_A 60 REASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYN-NQAGLADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HhcCCCcceEEEE
Confidence 34455666777776610001246689999999999999888764 8999999998886665433 33343 244556
Q ss_pred ccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 327 FATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 327 ~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.|...+|+++++||+|+|..+++|+ .+...+|.++.|+|||||+|+++++
T Consensus 139 ~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 139 GSFLEIPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcccCCCCCCCEeEEEecchhhhc-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 6788899999999999999887777 7789999999999999999999964
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=135.72 Aligned_cols=116 Identities=13% Similarity=0.220 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
.....+.+.+.+.. ..+..+|||||||+|.++..+++. +|+++|+++.++..+..... ..+ ...+...|..
T Consensus 28 ~~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~-~~~~~~~d~~ 102 (234)
T 3dtn_A 28 FDDFYGVSVSIASV---DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR-GNL-KVKYIEADYS 102 (234)
T ss_dssp HHHHHHHHHHTCCC---SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTC-SCT-TEEEEESCTT
T ss_pred HHHHHHHHHHHhhc---CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhc-cCC-CEEEEeCchh
Confidence 34445556666652 245689999999999999888764 79999999987754432211 112 3455666788
Q ss_pred CCCCCCCCeeEEEeccccccccCChH--HHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~--~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++++ ++||+|+|..+++|+ .+.. .+|+++.|+|||||.+++++.
T Consensus 103 ~~~~~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 103 KYDFE-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp TCCCC-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCC-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 88887 899999999887777 5544 599999999999999999975
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=135.89 Aligned_cols=117 Identities=16% Similarity=0.259 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d 328 (572)
+.......+.+.+..+ .+..+|||||||+|.++..+++. +|+|+|+++.++..+.. .+...++. ..+...|
T Consensus 29 ~~~~~~~~~l~~l~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d 104 (257)
T 3f4k_A 29 GSPEATRKAVSFINEL---TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADRVKGITGS 104 (257)
T ss_dssp CCHHHHHHHHTTSCCC---CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECC
T ss_pred CCHHHHHHHHHHHhcC---CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECC
Confidence 3445566666666532 45679999999999999888765 89999999988866553 34444544 4556667
Q ss_pred ccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.+++++++||+|+|..+++|+ +...+|.++.|+|||||++++++
T Consensus 105 ~~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 105 MDNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp TTSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88999999999999999887776 68899999999999999999996
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-14 Score=137.83 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
......+.+.+.++.+ .+..+|||||||+|.++..+++. +|+|+|+++.++ +.++++ ..+...+...
T Consensus 24 ~~~~~~~~~~~~l~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~---~~~~~~d~~~ 92 (240)
T 3dli_A 24 SRELVKARLRRYIPYF---KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMI-----KFCEGK---FNVVKSDAIE 92 (240)
T ss_dssp CHHHHHHHHGGGGGGT---TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHH-----HHHHTT---SEEECSCHHH
T ss_pred CHHHHHHHHHHHHhhh---cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHH-----HHHHhh---cceeeccHHH
Confidence 4455566666665543 45688999999999999888775 899999998766 444444 3344445555
Q ss_pred C--CCCCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 008262 332 L--PYPSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (572)
Q Consensus 332 L--Pfp~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~P~~~tl~E 385 (572)
+ ++++++||+|+|..+++|+ .+. ..+|+++.|+|||||+++++++ ......+
T Consensus 93 ~~~~~~~~~fD~i~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~ 148 (240)
T 3dli_A 93 YLKSLPDKYLDGVMISHFVEHL-DPERLFELLSLCYSKMKYSSYIVIESP-NPTSLYS 148 (240)
T ss_dssp HHHTSCTTCBSEEEEESCGGGS-CGGGHHHHHHHHHHHBCTTCCEEEEEE-CTTSHHH
T ss_pred HhhhcCCCCeeEEEECCchhhC-CcHHHHHHHHHHHHHcCCCcEEEEEeC-CcchhHH
Confidence 4 7888999999999887777 543 7999999999999999999975 4454443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=131.21 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=103.1
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC------CcEEEeccccCCCCCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA------PAMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~------~~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
+..+|||+|||+|.++..+++. +|+++|+++.++..++. .+...+. ...+...+...+++++++||+|+|.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAET-AARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4679999999999999998876 89999999987754432 2222232 1345556788889889999999999
Q ss_pred cccccccCChH---HHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhh-hhhhchhhhh-ccC--cEEEeeccc
Q 008262 346 RCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDL-TTRLCWELVK-KEG--YIAIWKKPT 418 (572)
Q Consensus 346 ~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~-~~~l~w~~v~-~~g--~i~iw~kpl 418 (572)
.+++|+ .++. .+|+++.|+|||||.+++.++............+...... .....|.... ..+ ....+....
T Consensus 109 ~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 109 AFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp SCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred chhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 887766 6666 8999999999999999999753333333333322111111 0000010000 000 122233445
Q ss_pred hhHHHHHHhcCCCCCcc
Q 008262 419 NNSCYLNREAGTIPPLC 435 (572)
Q Consensus 419 ~~~c~ll~~aGF~~p~c 435 (572)
.+...+++++||....+
T Consensus 188 ~~l~~ll~~aGf~~~~~ 204 (235)
T 3sm3_A 188 KELVFLLTDCRFEIDYF 204 (235)
T ss_dssp HHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 56777889999966443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-14 Score=136.64 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=78.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHH------------cCCCcEEEeccccCCCCCC-C
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE------------RGAPAMVAAFATRRLPYPS-Q 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~------------rg~~~~~~~~d~e~LPfp~-~ 337 (572)
.+..+|||+|||+|..+..|+++ +|+|+|+|+.|+..++.+.... ......+...|+..+++.+ +
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 35689999999999999999875 8999999999986654322110 1223456666888888765 8
Q ss_pred CeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
+||+|++..+++|+..+ ...++++++|+|||||++++.+
T Consensus 101 ~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999998777666432 2479999999999999855543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-14 Score=141.88 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCchhHHH----hcc----CC--eEEEeCCccchHHHHHHHHHHcCCCcE---EEeccccCCC------
Q 008262 273 HHIRVVMDAGCGVASFGAY----LLP----RN--VITMSIAPKDVHENQIQFALERGAPAM---VAAFATRRLP------ 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~----L~~----~~--V~gvDiSp~dl~~a~~~~A~~rg~~~~---~~~~d~e~LP------ 333 (572)
.+..+|||||||+|.++.. ++. .. ++++|+|+.|+..+..+.+...++... +...+.+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 3457899999999976543 322 12 399999999997766444332244332 2233334433
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++++||+|+|+.+++|+ +|+..+|++++|+|||||+|++...
T Consensus 131 ~~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp TCCCCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeeec-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 668999999999886655 8999999999999999999999853
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=134.69 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=108.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||||||+|.++..+++. +|+|+|+++.++..+.... ........+...|.+.+++++++||+|+|..+++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~- 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH- 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG-
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchh-
Confidence 45689999999999999998876 8999999998885544332 1112234556667888999899999999987754
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEECCCC--CCHHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhc
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQPVY--KHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREA 428 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~P~~--~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~a 428 (572)
+..+...++.++.|+|||||++++.. +.. .....+...+..+... .++. ..... ......+...+++++
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~--~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEGW-DQAEASPEWTLQERWRAFAAE---EGFP---VERGL--HAKRLKEVEEALRRL 186 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEE-EEECCCHHHHHHHHHHHHHHH---HTCC---CCCCH--HHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEEe-cCCCccHHHHHHHHHHHHHHH---hCCC---ccccc--ccCCHHHHHHHHHHc
Confidence 44788999999999999999999882 122 1112233333332221 1111 00000 011122355678899
Q ss_pred CCCCCccCCCCCCccccCCCHHHHHhhcc
Q 008262 429 GTIPPLCDPDDNPDNVWYVDLKACITRLP 457 (572)
Q Consensus 429 GF~~p~cd~~~~~~~~wY~~l~~~L~~L~ 457 (572)
||....+. ... .....+...++..+.
T Consensus 187 Gf~~~~~~--~~~-~~~~~~~~~~~~~~~ 212 (263)
T 2yqz_A 187 GLKPRTRE--VAR-WREERTPREALEALS 212 (263)
T ss_dssp TCCCEEEE--EEE-EEEEECHHHHHHHHH
T ss_pred CCCcceEE--Eee-eecCCCHHHHHHHHH
Confidence 99765432 111 112346777777665
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=135.38 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcC---CCcEEEec
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG---APAMVAAF 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg---~~~~~~~~ 327 (572)
+.....+.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.++ +.++++. ....+...
T Consensus 39 ~~~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~~ 109 (266)
T 3ujc_A 39 GGLEATKKILSDIE----LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-----NMANERVSGNNKIIFEAN 109 (266)
T ss_dssp THHHHHHHHTTTCC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-----HHHHHTCCSCTTEEEEEC
T ss_pred chHHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-----HHHHHHhhcCCCeEEEEC
Confidence 44455566665554 346789999999999999888764 899999999776 4444442 23445566
Q ss_pred cccCCCCCCCCeeEEEecccccccc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|...+++++++||+|+|..+++|+. .+...+|.++.|+|||||.+++.++
T Consensus 110 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 110 DILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 7888899999999999998866663 4557999999999999999999974
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=137.78 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=88.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
.+.+.+.+.+. ..+..+|||||||+|.++..|++. +|+|+|+++.++ +.++++. ...+...|.+.+++
T Consensus 21 ~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~-~~~~~~~d~~~~~~ 90 (261)
T 3ege_A 21 RIVNAIINLLN----LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMR-----QQAVVHP-QVEWFTGYAENLAL 90 (261)
T ss_dssp HHHHHHHHHHC----CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHH-----HSSCCCT-TEEEECCCTTSCCS
T ss_pred HHHHHHHHHhC----CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHH-----HHHHhcc-CCEEEECchhhCCC
Confidence 45666666665 246789999999999999999876 899999998765 3333332 44566678888999
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++||+|+|..+++|+ .+...+|++++|+|| ||++++.+.
T Consensus 91 ~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 91 PDKSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp CTTCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCCCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 99999999999887777 889999999999999 998888764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=130.73 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||+|||+|.++..+++. +|+++|+++.++..+...... .+.. ..+...|...+++++++||+|+|+.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK-LGLKNVEVLKSEENKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-HTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-cCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence 45679999999999988887653 799999999988766644433 3433 4556667888899999999999998
Q ss_pred ccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++|+ .+...++.++.|+|||||.+++.+.
T Consensus 115 ~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 115 TFHEL-SEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp CGGGC-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhc-CCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 87777 7889999999999999999999863
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=136.40 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
....++..+.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+...... . ....+...+.+
T Consensus 77 ~~~~~~~~~l~~l~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~ 150 (254)
T 1xtp_A 77 VDIEGSRNFIASLP----GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-M-PVGKFILASME 150 (254)
T ss_dssp HHHHHHHHHHHTST----TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-S-SEEEEEESCGG
T ss_pred HHHHHHHHHHHhhc----ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-C-CceEEEEccHH
Confidence 33445555555554 345789999999999999888765 599999999887544322211 1 22345556778
Q ss_pred CCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++++++||+|+|..+++|+.. +...+|.++.|+|||||++++++.
T Consensus 151 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 151 TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 88988899999999998777742 357999999999999999999973
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=132.47 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc--CCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER--GAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r--g~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..+++. +|+++|+++.++. .++++ .....+...|...+++++++||+|+|..+++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQ-----KGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHH-----HHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHH-----HHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence 4579999999999999999877 8999999987763 34433 2334455667888999899999999998877
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+ .+...+|.++.++|||||++++++.
T Consensus 128 ~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 128 WT-EEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp SS-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-cCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 77 8889999999999999999999974
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=131.24 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=82.1
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
..+|||||||+|.++..|++. +|+|+|+++.++ +.++++.....+...|...+++++++||+|+|..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLV-----ELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHH-----HHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 478999999999999999876 899999998877 4444444445566677888888889999999998888874
Q ss_pred -CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 353 -RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 353 -~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+...+|+++.++|||||+++++.+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3668999999999999999999974
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=135.09 Aligned_cols=98 Identities=20% Similarity=0.358 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||||||+|.++..|++. +|+|+|+++.++..+ +++.... +...+.+.+++++++||+|+|..+++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a-----~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVA-----REKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHH-----HHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHH-----HhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 5679999999999999999876 799999999877443 3333223 5556788899988999999998888899
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+...+|.++.|+|||||.++++++
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 78889999999999999999999874
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=146.77 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=111.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc----C----CCcEEEeccccCC------C
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER----G----APAMVAAFATRRL------P 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r----g----~~~~~~~~d~e~L------P 333 (572)
.+..+|||||||+|.++..|++. +|+|+|+++.++..+........ | ....+...|.+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 35689999999999988877653 79999999988866554333210 2 2345556677776 8
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAI 413 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~i 413 (572)
+++++||+|+|+.+++|+ .+...+|+++.|+|||||+|++++........+........ |.... .+
T Consensus 162 ~~~~~fD~V~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--------~~~~~-~~---- 227 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLS-TNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL--------YGECL-GG---- 227 (383)
T ss_dssp CCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHH--------HHTTC-TT----
T ss_pred CCCCCEEEEEEccchhcC-CCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHH--------hhccc-cc----
Confidence 999999999999875555 88999999999999999999998642222211111100000 10000 00
Q ss_pred eeccchhHHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcc
Q 008262 414 WKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLP 457 (572)
Q Consensus 414 w~kpl~~~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~ 457 (572)
.....+...+++++||...... ........+.++..++.++.
T Consensus 228 -~~~~~~~~~ll~~aGF~~v~~~-~~~~~~~~~~~~~~~l~~~~ 269 (383)
T 4fsd_A 228 -ALYLEDFRRLVAEAGFRDVRLV-SVGPVDVSDPQLRKLVPDVQ 269 (383)
T ss_dssp -CCBHHHHHHHHHHTTCCCEEEE-EEEEECCCCHHHHTTSTTCC
T ss_pred -CCCHHHHHHHHHHCCCceEEEE-eccccccCCHhHHHHhcCCc
Confidence 0112356678889999765332 24556667777777777766
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-13 Score=127.76 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
+..+|||||||+|.++..+ .. +|+++|+++.++.. ++++.....+...+.+.+++++++||+|+|..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~-----a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAV-----GRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV- 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHH-----HHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTC-
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHH-----HHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhc-
Confidence 5689999999999999988 55 89999999987744 3333233445566788899989999999999886666
Q ss_pred CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 353 RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 353 ~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++..+|.++.|+|||||.++++++
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 7889999999999999999999975
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=136.17 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCCchhHHHhc---cC--CeEEEeCCccchHHHHHHHHHH--cCCCcEEEeccccCCCCCC------CCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLL---PR--NVITMSIAPKDVHENQIQFALE--RGAPAMVAAFATRRLPYPS------QAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~---~~--~V~gvDiSp~dl~~a~~~~A~~--rg~~~~~~~~d~e~LPfp~------~sF 339 (572)
.+..+|||||||+|.++..|+ .. +|+|+|+++.++..+....... ......+...|.+.+++++ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 367899999999999999988 33 8999999999886665443332 1234456667888888877 899
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
|+|+|..+++|+ +...++.++.|+|||||.|++.
T Consensus 115 D~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 115 DMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 999999875555 8899999999999999999984
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-13 Score=136.73 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=89.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP 333 (572)
.+.+.+.+.. ..+..+|||||||+|.++..|+++ +|+|+|+++.++..+.. .+...++. ..+...|.+.++
T Consensus 105 ~~~l~~~l~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 105 AEFLMDHLGQ---AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR-RARELRIDDHVRSRVCNMLDTP 180 (312)
T ss_dssp HHHHHTTSCC---CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHHhcc---CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhcCC
Confidence 3445555542 246789999999999999888764 89999999988866654 33444543 456667888999
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++++||+|+|..+++|+ +...+|.++.|+|||||++++.+.
T Consensus 181 ~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CCTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999887777 489999999999999999999864
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=127.62 Aligned_cols=97 Identities=22% Similarity=0.356 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||||||+|.++..|++. +|+++|+++.++..+.... +.. +...+...++ ++++||+|+|+.+++|+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~----~~~--~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL----GRP--VRTMLFHQLD-AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----TSC--CEECCGGGCC-CCSCEEEEEECSCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----CCc--eEEeeeccCC-CCCcEEEEEecCchhhc
Confidence 4679999999999999999876 8999999998775444322 332 3344677787 78999999999887777
Q ss_pred cC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. +...+|+++.|+|||||+++++..
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 32 557999999999999999999964
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=135.70 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC-CCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP-YPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LP-fp~~sFDlI~ss~~l 348 (572)
+..+|||||||+|.++..|++. +|+|+|+++.++..+... +...+. ...+...|...++ +.+++||+|+|..++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQA-AEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 4579999999999999999876 899999999888665533 333343 2345556777777 788999999999886
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+ .++..+|.++.|+|||||++++...
T Consensus 147 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 147 EWV-ADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcc-cCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 666 8889999999999999999999964
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=129.18 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||||||+|.++..|++. +|+++|+++.++..+...... . ....+...|...++ ++++||+|+|+.+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR-W-SHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-C-SSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-C-CCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 45679999999999999999887 899999999887554432211 1 13445566777777 6789999999988766
Q ss_pred ccCCh---HHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~---~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ .++ ..+|.++.++|||||+++++++
T Consensus 127 ~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 127 L-EDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp S-SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 6 665 4779999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=131.40 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||||||+|.++..|++. +|+++|+++.++..+.............+...|...+++++++||+|+|..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 5789999999999999988875 7999999998886554332221111233555677888888889999999988777
Q ss_pred ccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ .+. ..+|.++.|+|||||+++++++
T Consensus 159 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 L-TDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp S-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 7 553 4899999999999999999864
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-14 Score=149.53 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEE---Eecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMV---AAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~---~~~d 328 (572)
....+++.+.+.+. ..+..+|||||||+|.++..|++. +|+|+|+|+.++ +.|++++..... ...+
T Consensus 91 ~~~~~~~~l~~~~~----~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~~~~~ 161 (416)
T 4e2x_A 91 HFAMLARDFLATEL----TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVA-----AKAREKGIRVRTDFFEKAT 161 (416)
T ss_dssp HHHHHHHHHHHTTT----CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHH-----HHHHTTTCCEECSCCSHHH
T ss_pred HHHHHHHHHHHHhC----CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHH-----HHHHHcCCCcceeeechhh
Confidence 34455666665554 245689999999999999999877 899999998776 555555554322 1234
Q ss_pred ccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+.+++++++||+|+|..+++|+ .++..+|++++|+|||||+|++.++
T Consensus 162 ~~~l~~~~~~fD~I~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 162 ADDVRRTEGPANVIYAANTLCHI-PYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp HHHHHHHHCCEEEEEEESCGGGC-TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcccCCCCEEEEEECChHHhc-CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 55677778999999999998887 7899999999999999999999864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=137.52 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH-----------------HcCCCcEEEeccccCCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL-----------------ERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~-----------------~rg~~~~~~~~d~e~LPf 334 (572)
+..+|||+|||+|..+..|+++ +|+|+|+|+.++..++.+... ..+....+...|+..+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 5679999999999999999877 799999999988655332210 011334566678888887
Q ss_pred CC-CCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PS-QAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~-~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+ ++||+|++..+++++..+ ...+++++.|+|||||+|++.+
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 64 899999998877776433 3579999999999999997654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=124.12 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..+++. +|+++|+++.++..+..... ..+. ...+...|...+++ +++||+|+|..+++|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKS-IENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH-hCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 4579999999999999988876 89999999988866654333 3344 34455567788888 789999999988777
Q ss_pred ccC-ChHHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTR-DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~-d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. +...++.++.++|||||++++.+
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 632 55799999999999999988765
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=133.23 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=88.9
Q ss_pred ccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEE
Q 008262 251 FIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVA 325 (572)
Q Consensus 251 f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~ 325 (572)
+...+...++.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.++..+... +...+. ...+.
T Consensus 45 l~~a~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~-~~~~~~~~~~~~~ 119 (287)
T 1kpg_A 45 LQEAQIAKIDLALGKLG----LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQL-VANSENLRSKRVL 119 (287)
T ss_dssp HHHHHHHHHHHHHTTTT----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHTCCCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCCCCeEEE
Confidence 33445556666666664 246689999999999999888743 899999999888655433 233333 23444
Q ss_pred eccccCCCCCCCCeeEEEecccccccc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 326 AFATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 326 ~~d~e~LPfp~~sFDlI~ss~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..|.+.+| ++||+|+|..+++|+. .+...+|.++.|+|||||.+++.++
T Consensus 120 ~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 120 LAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp ESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 55666665 7899999999888885 4668999999999999999999874
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-13 Score=135.63 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=87.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT 329 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~ 329 (572)
..+.+.+.+.+.. .+..+|||||||+|.++..|++. +|+|+|+|+.++..+..+...... ....+...+.
T Consensus 43 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 43 AEYKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHhcc----cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 4445555555542 34679999999999999999887 799999999988666543322111 1223445566
Q ss_pred cCCC---CCCCCeeEEEec-cccccccCC-------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLP---YPSQAFDLIHCS-RCRINWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LP---fp~~sFDlI~ss-~~l~hw~~d-------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..++ +++++||+|+|. .+++|+ .+ ...+|++++|+|||||+|+++.+
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHL-PDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGS-CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhc-CccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6777 788999999998 676776 66 68999999999999999999964
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-13 Score=132.19 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=83.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...+.+.+.+... ..+..+|||||||+|.++..|++. +|+|+|+++.++. .++++.....+...|...+++
T Consensus 35 ~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~-----~a~~~~~~~~~~~~d~~~~~~ 107 (263)
T 3pfg_A 35 REAADLAALVRRH--SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLA-----IARRRNPDAVLHHGDMRDFSL 107 (263)
T ss_dssp HHHHHHHHHHHHH--CTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHH-----HHHHHCTTSEEEECCTTTCCC
T ss_pred HHHHHHHHHHHhh--CCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHH-----HHHhhCCCCEEEECChHHCCc
Confidence 3344444444332 134589999999999999999887 7999999988774 444443344566667888887
Q ss_pred CCCCeeEEEecc-cccccc--CChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSR-CRINWT--RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~-~l~hw~--~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++||+|+|.. +++|+. .+...+|+++.++|||||+|++..
T Consensus 108 -~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 108 -GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp -SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 68999999987 666653 244689999999999999999974
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=129.11 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC------CcEEE
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA------PAMVA 325 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~------~~~~~ 325 (572)
....+.+.+.+.. .+..+|||||||+|.++..|++. +|+|+|+++.++..+..... ..+. ...+.
T Consensus 15 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~ 89 (217)
T 3jwh_A 15 QQRMNGVVAALKQ----SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-RLRLPRNQWERLQLI 89 (217)
T ss_dssp HHHHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT-TCCCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH-HhcCCcccCcceEEE
Confidence 4445556666552 35679999999999999998864 79999999988866553322 2222 24455
Q ss_pred eccccCCCCCCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 326 ~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
..|...++.++++||+|+|..+++|+ .+. ..+++++.|+|||||+++++.
T Consensus 90 ~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 90 QGALTYQDKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ECCTTSCCGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eCCcccccccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 55667777777899999999887777 544 699999999999999777764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-13 Score=126.93 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCchhH-HHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFG-AYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a-~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++ ..+... +|+++|+++.++..+..... ..+....+...|...+++++++||+|+|..+++|
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSR-ENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHH-HHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH-hcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 4579999999999874 444333 79999999998876654333 3334444556678888988899999999888777
Q ss_pred cc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+. .+...++.++.|+|||||+++++++
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 73 3457999999999999999999974
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=128.35 Aligned_cols=116 Identities=9% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC------CcEE
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA------PAMV 324 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~------~~~~ 324 (572)
.....+.+.+.+.. .+..+|||||||+|.++..|++. +|+|+|+++.++..+...... .+. ...+
T Consensus 14 ~~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 14 NQQRLGTVVAVLKS----VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKI-DRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTG-GGSCHHHHTTEEE
T ss_pred hHHHHHHHHHHHhh----cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHh-hccccccCcceEE
Confidence 34445555555542 35679999999999999999864 799999999888665543322 222 3345
Q ss_pred EeccccCCCCCCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 325 ~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
...|...+++++++||+|+|..+++|+ .++ ..+++++.++|||||+++.+.
T Consensus 89 ~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 89 FQSSLVYRDKRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EECCSSSCCGGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EeCcccccccccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 556777778778899999999987777 544 689999999999999776653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=127.78 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=83.7
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP 335 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp 335 (572)
...+.+.+..+ .+..+|||||||+|.++..|++. +|+++|+++.++. .+++.+. ...+...|...+ ++
T Consensus 34 ~~~~~~~l~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~-----~a~~~~~~~~~~~~~d~~~~-~~ 104 (218)
T 3ou2_A 34 APAALERLRAG---NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIA-----EAGRHGLDNVEFRQQDLFDW-TP 104 (218)
T ss_dssp HHHHHHHHTTT---TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHH-----HHGGGCCTTEEEEECCTTSC-CC
T ss_pred HHHHHHHHhcC---CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHH-----HHHhcCCCCeEEEecccccC-CC
Confidence 34445555432 34579999999999999888765 8999999988774 4444553 344555677777 77
Q ss_pred CCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|+.+++|+ .+. ..+|+++.|+|||||.+++++.
T Consensus 105 ~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHV-PDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceeEEEEechhhcC-CHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8999999999887777 554 7899999999999999999975
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=133.67 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=89.3
Q ss_pred ccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEE
Q 008262 251 FIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVA 325 (572)
Q Consensus 251 f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~ 325 (572)
+...+...++.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.++..++.. +...++. ..+.
T Consensus 53 l~~a~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~ 127 (302)
T 3hem_A 53 LEEAQYAKRKLALDKLN----LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAM-FDEVDSPRRKEVR 127 (302)
T ss_dssp HHHHHHHHHHHHHHTTC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHcC----CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEE
Confidence 33445556666666664 346789999999999999888765 799999999888666543 3344543 3455
Q ss_pred eccccCCCCCCCCeeEEEeccccccccCCh---------HHHHHHHHHhccCCeEEEEEEC
Q 008262 326 AFATRRLPYPSQAFDLIHCSRCRINWTRDD---------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 326 ~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~---------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..|...+ +++||+|+|..+++|+ .++ ..+|.++.|+|||||.+++.+.
T Consensus 128 ~~d~~~~---~~~fD~v~~~~~~~~~-~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 128 IQGWEEF---DEPVDRIVSLGAFEHF-ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp ECCGGGC---CCCCSEEEEESCGGGT-TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred ECCHHHc---CCCccEEEEcchHHhc-CccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 5566655 6899999999887777 443 6999999999999999999974
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=126.43 Aligned_cols=103 Identities=19% Similarity=0.311 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..+++. +|+++|+++.++..+..... ..+....+...|...+++++++||+|+|+.+++++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAK-SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence 3679999999999999888876 89999999988866654333 33344456666788888888899999998773332
Q ss_pred -cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 -TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 -~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+...++.++.++|||||.+++..+
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 24557899999999999999999864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=122.46 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC-CCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP-YPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP-fp~~sFDlI~ss~~l 348 (572)
.+..+|||+|||+|.++..|++. +|+|+|+++.++..++.... ..+.. ..+...+.+.++ +.+++||+|+++...
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLS-DLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 35689999999999999999876 89999999999876654433 34443 333444555543 457899999987322
Q ss_pred ccc--------cCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 349 INW--------TRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 349 ~hw--------~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
++. ..+...++.++.|+|||||.+++...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 221 122247899999999999999998653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=124.53 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=78.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||+|||+|.++..+++. +|+++|+++.++.. ++++.....+...+ +++++++||+|+|..+++|
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~-----a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKE-----VKEKFDSVITLSDP---KEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHH-----HHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTT
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHH-----HHHhCCCcEEEeCC---CCCCCCceEEEEEccchhc
Confidence 35678999999999999999887 89999999877643 33333333444444 7788899999999988777
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ .+...+++++.|+|||||++++.+.
T Consensus 88 ~-~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 88 M-DDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 7 7889999999999999999999964
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=134.18 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR- 331 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~- 331 (572)
..+.+.+++.+. .++.+|||||||+|..+..+++. +|+++|+++.++..++. .+...+....+...+.+.
T Consensus 47 ~~~m~~~a~~~~-----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~-~~~~~~~~~~~~~~~a~~~ 120 (236)
T 3orh_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHH-HHhhCCCceEEEeehHHhh
Confidence 345566666554 46789999999999999999876 79999999988855543 333344444444444433
Q ss_pred -CCCCCCCeeEEEec-----cccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 332 -LPYPSQAFDLIHCS-----RCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 -LPfp~~sFDlI~ss-----~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.++++++||.|+.. ....|+ .+...++.++.|+|||||.|++.
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~~~~-~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccCCceEEEeeeecccchhhh-cchhhhhhhhhheeCCCCEEEEE
Confidence 35788999999853 222333 55679999999999999999875
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=127.25 Aligned_cols=119 Identities=20% Similarity=0.323 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
.....+.+.+.+... ..+..+|||||||+|.++..+++. +|+++|+++.++..+..... ..+....+...|...+
T Consensus 20 ~~~~~~~~~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~ 96 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR-SQGLKPRLACQDISNL 96 (246)
T ss_dssp HHHHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEECCCGGGC
T ss_pred HHHHHHHHHHHHHHh--CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHh-hcCCCeEEEecccccC
Confidence 344555566665522 235689999999999999998876 79999999998876654433 3343455666678888
Q ss_pred CCCCCCeeEEEecc-cccccc--CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSR-CRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~-~l~hw~--~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++ ++||+|+|.. +++|+. .+...+|.++.++|||||.++++.+
T Consensus 97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 877 8999999997 766663 3457999999999999999999863
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=126.77 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=83.9
Q ss_pred HHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCC
Q 008262 261 QIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYP 335 (572)
Q Consensus 261 ~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp 335 (572)
.+.+.+. ..+..+|||||||+|.++..+++. +|+++|+++.++. .++++.. ...+...|...++++
T Consensus 34 ~l~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~~~~~~~d~~~~~~~ 104 (243)
T 3bkw_A 34 ALRAMLP----EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLA-----RARAAGPDTGITYERADLDKLHLP 104 (243)
T ss_dssp HHHHHSC----CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHH-----HHHHTSCSSSEEEEECCGGGCCCC
T ss_pred HHHHhcc----ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHH-----HHHHhcccCCceEEEcChhhccCC
Confidence 3444554 235689999999999999888765 7999999987774 3443322 234555677888888
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|..+++|+ .+...+|.++.++|||||+++++++
T Consensus 105 ~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYV-EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp TTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceEEEEecccccc-chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 8999999999886666 7889999999999999999999863
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=120.27 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=84.6
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~ 331 (572)
...+.+.+.+. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+..... ..+.. ..+...|...
T Consensus 39 ~~~~~l~~~~~----~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 39 KGTKILVENVV----VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK-LNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHHCC----CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCTTSCEEEEECSTTT
T ss_pred hHHHHHHHHcc----cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECchhc
Confidence 45566666665 236689999999999999888875 89999999988866654333 33444 3444445544
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++++||+|+++..+++...+...++.++.++|||||.+++.+.
T Consensus 114 -~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 114 -NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 345679999999876443234557999999999999999999974
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=131.68 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
..+++.+.+.+. .+..+|||||||+|.++..|++. +|+++|+++.|+..++. .+...+....+...+.+.+
T Consensus 47 ~~~~~~l~~~~~-----~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 47 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHhhcC-----CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHh
Confidence 345555555443 35679999999999999999774 79999999998865553 2223333344555677777
Q ss_pred --CCCCCCeeEEEe-cccccccc----CChHHHHHHHHHhccCCeEEEEEE
Q 008262 333 --PYPSQAFDLIHC-SRCRINWT----RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 333 --Pfp~~sFDlI~s-s~~l~hw~----~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++++++||+|++ .... +.. .+...++.+++|+|||||+|++..
T Consensus 121 ~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 121 APTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 888999999998 4332 221 122377999999999999999875
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=124.60 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=78.5
Q ss_pred EEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc-C
Q 008262 277 VVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT-R 353 (572)
Q Consensus 277 ~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~-~ 353 (572)
+|||||||+|.++..|++. +|+++|+++.++..+..... ..+....+...|...+++++++||+|+|+. .|+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQ-EKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHH-HHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHH-hcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 9999999999999998876 89999999988866554333 334455566667788888889999999853 4542 3
Q ss_pred ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 354 DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 354 d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+...++.++.++|||||++++.++
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 457999999999999999999974
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=123.43 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=86.6
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC-CcEEEecc
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-PAMVAAFA 328 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d 328 (572)
...+...+.+.+.+.... ..+..+|||+|||+|.++..++.+ +|+++|+++.++..++.+.. ..+. ...+...|
T Consensus 24 p~~~~~~~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d 101 (189)
T 3p9n_A 24 PTTDRVRESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIE-ALGLSGATLRRGA 101 (189)
T ss_dssp --CHHHHHHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHH-HHTCSCEEEEESC
T ss_pred cCcHHHHHHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH-HcCCCceEEEEcc
Confidence 344555666666654321 135689999999999999876655 69999999998876664443 3344 33455556
Q ss_pred ccCCC--CCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEEC
Q 008262 329 TRRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LP--fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st~ 377 (572)
...++ +++++||+|+++...++...+...++.++.+ +|||||.+++...
T Consensus 102 ~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 102 VAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 55543 4578999999987644433566899999999 9999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=131.74 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=85.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcC----CCcEEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG----APAMVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~e 330 (572)
.....+.+.+. ....+|||||||+|.++..|++. +|+|+|+++.++..+..... ..+ ....+...|..
T Consensus 70 ~~~~~~~~~~~-----~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 70 SEAREFATRTG-----PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLA-EAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHC-----CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHH-TSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHHhhC-----CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHh-hcccccccceEEEeCchh
Confidence 34445555554 23348999999999999999887 89999999988866554332 222 23456667888
Q ss_pred CCCCCCCCeeEEEeccccccccCC--hHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d--~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++ +++||+|+|....+|+..+ ...+|+++.|+|||||+|+++++
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 8887 6899999987666666442 47999999999999999999964
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=123.40 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=77.8
Q ss_pred CCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccCC
Q 008262 275 IRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d 354 (572)
..+|||||||+|.++..++.. +++|+++.++ +.+++++ ..+...+.+.+++++++||+|+|..+++|+ .+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~-----~~a~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMA-----EIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHHHH-----HHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHH-----HHHHhcC--CEEEEcccccCCCCCCCeeEEEEcchHhhc-cC
Confidence 578999999999999999887 9999998876 3444443 334455778888888999999999886666 88
Q ss_pred hHHHHHHHHHhccCCeEEEEEEC
Q 008262 355 DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 355 ~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+..+|.++.++|||||.++++.+
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~ 140 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIV 140 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEe
Confidence 89999999999999999999975
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=122.22 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC--CCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--LPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~--LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||+|||+|.++..+++. +++++|+++.++ +.++++.. .+...|... +++++++||+|+|..++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~-----~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l 103 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAA-----EQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVL 103 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHH-----HHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChh
Confidence 35689999999999999988876 899999998766 44444332 244445554 67888999999999887
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~t 382 (572)
+|+ .++..++.++.++|||||+++++++ ....
T Consensus 104 ~~~-~~~~~~l~~~~~~L~~gG~l~~~~~-~~~~ 135 (230)
T 3cc8_A 104 EHL-FDPWAVIEKVKPYIKQNGVILASIP-NVSH 135 (230)
T ss_dssp GGS-SCHHHHHHHTGGGEEEEEEEEEEEE-CTTS
T ss_pred hhc-CCHHHHHHHHHHHcCCCCEEEEEeC-Ccch
Confidence 776 7889999999999999999999974 4443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-13 Score=132.76 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc----------------CC-------------
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER----------------GA------------- 320 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r----------------g~------------- 320 (572)
.++.+|||||||+|.++..++.. +|+|+|+|+.|+..++....... +.
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 45678999999999887766544 69999999999976653221100 00
Q ss_pred Cc-EEEeccccC-CCC---CCCCeeEEEeccccccccCC---hHHHHHHHHHhccCCeEEEEEE
Q 008262 321 PA-MVAAFATRR-LPY---PSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 ~~-~~~~~d~e~-LPf---p~~sFDlI~ss~~l~hw~~d---~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. .+...|+.. .|+ ..++||+|+|+.+++|...+ ...+|.+++|+|||||+|++++
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 00 134445544 343 35799999999987776443 3589999999999999999996
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=123.29 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
+..+|||+|||+|.++..+++. +|+++|+++.++..++..... .....+...|...+++++++||+|++..++.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4578999999999999888765 799999999887554432221 12334555677888888899999999877654
Q ss_pred cc--------------CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WT--------------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~--------------~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. .+...+|.++.|+|||||.+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 42 2446899999999999999999974
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=130.71 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=88.3
Q ss_pred cccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEe
Q 008262 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAA 326 (572)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~ 326 (572)
.......++.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++.++..+... ....+.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~ 146 (318)
T 2fk8_A 72 EEAQYAKVDLNLDKLD----LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQV-LASIDTNRSRQVLL 146 (318)
T ss_dssp HHHHHHHHHHHHTTSC----CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHTSCCSSCEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEE
Confidence 3344556666666654 246689999999999999888754 899999999888655433 3333432 34445
Q ss_pred ccccCCCCCCCCeeEEEecccccccc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 327 FATRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 327 ~d~e~LPfp~~sFDlI~ss~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.|.+.++ ++||+|+|..+++|+. .+...+|.++.|+|||||.+++.++
T Consensus 147 ~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 147 QGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp SCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5666664 7899999998877775 4668999999999999999999974
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=124.10 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC---CCCC-CCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL---PYPS-QAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L---Pfp~-~sFDlI~ss~~ 347 (572)
+..+|||||||+|.++..|++. +|+|+|+++.++ +.++++.. ..+...+...+ ++.. ++||+|+|+.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~ 125 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLV-----DAARAAGA-GEVHLASYAQLAEAKVPVGKDYDLICANFA 125 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHTCS-SCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHH-----HHHHHhcc-cccchhhHHhhcccccccCCCccEEEECch
Confidence 4589999999999999999876 799999998776 44444432 22333344444 5444 45999999987
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++ ..+...+|+++.++|||||+++++++
T Consensus 126 l~--~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 126 LL--HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 55 58889999999999999999999974
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=133.26 Aligned_cols=103 Identities=8% Similarity=0.039 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC-------cEEEeccc------cCC--CCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-------AMVAAFAT------RRL--PYP 335 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~-------~~~~~~d~------e~L--Pfp 335 (572)
+..+|||||||+|..+..++.. +|+|+|+|+.|+..++.... +.+.. ..+...++ +.+ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~-~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN-KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-hccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999755444332 79999999999987765433 33321 12323333 323 466
Q ss_pred CCCeeEEEecccccccc--CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 336 SQAFDLIHCSRCRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~--~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||+|+|..++++.. .+...+|+++.|+|||||+|+++++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 78999999988754322 3447999999999999999999974
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=121.94 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
...+.+.+.+.++ +..+|||+|||+|.++..+++. +|+++|+++.++..+..... ..+....+...|...++
T Consensus 20 ~~~~~~~~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 20 YPEWVAWVLEQVE------PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAM-ETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHHSC------TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHH-HTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHHcC------CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhh-hcCCceEEEEcChhhcC
Confidence 3455566666654 3479999999999999998876 89999999998866654333 33444455566777788
Q ss_pred CCCCCeeEEEecc-cccccc--CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSR-CRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~-~l~hw~--~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++ ++||+|+|.. +++|+. .+...+|+++.++|||||.++++.+
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 76 8999999976 655552 2346899999999999999999864
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-12 Score=123.67 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=77.9
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcC-CCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
..+|||||||+|.++..|++. +|+|+|+++.++..+......... ....+...|...++ ++++||+|+|..+++++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAI 145 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTS
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcC
Confidence 359999999999999999877 799999999888655433221101 12345556777766 45699999999887776
Q ss_pred cC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. +...++.++.++|||||+|++...
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 32 557999999999999999999875
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=125.82 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCC-CCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYP-SQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~LPfp-~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..|++. +|+++|+++.++.. ++++.....+...|. +.+|++ +++||+|+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKL-----ARANAPHADVYEWNGKGELPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHH-----HHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHH-----HHHhCCCceEEEcchhhccCCcCCCCEEEEEeC----
Confidence 4689999999999999999876 89999999987744 333333445555666 678888 8999999986
Q ss_pred cccCChHHHHHHHHHhccCCeEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv 373 (572)
.+...++.++.++|||||.++
T Consensus 119 ---~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ---RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---SCCSGGGGGHHHHEEEEEEEE
T ss_pred ---CCHHHHHHHHHHHcCCCcEEE
Confidence 466789999999999999998
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=124.32 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=75.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecc-ccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~-~l~ 349 (572)
.+..+|||||||+|.++..|++. +|+++|+++.++..+ +++.....+...|...+++ +++||+|+|.. +++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a-----~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~ 112 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHA-----RKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVG 112 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHH-----HHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHH-----HHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHh
Confidence 35689999999999999988876 799999999877443 3333334455567777877 68999999765 544
Q ss_pred ccc--CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWT--RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~--~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|.. .+...+|+++.++|||||.++++..
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 113 YLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp GCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 442 2346899999999999999999853
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=127.57 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..|++. +|+|+|+++.++..++.. +...+....+...|...+++ +++||+|+|+.+++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNET-KEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 4578999999999999999876 899999999988666543 34445555566667788777 7899999999887766
Q ss_pred cCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 352 TRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 352 ~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+ ...++.++.++|||||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 322 3599999999999999988864
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=130.01 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=103.1
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc------CC-CcEEEeccccCCC----CC--CC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------GA-PAMVAAFATRRLP----YP--SQ 337 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r------g~-~~~~~~~d~e~LP----fp--~~ 337 (572)
+..+|||||||+|.++..+++. +|+++|+++.++..+........ +. ...+...|.+.++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999999999888754 79999999999876665444321 11 2345556777765 53 45
Q ss_pred CeeEEEecccccccc-CC---hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCcEEE
Q 008262 338 AFDLIHCSRCRINWT-RD---DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAI 413 (572)
Q Consensus 338 sFDlI~ss~~l~hw~-~d---~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~i~i 413 (572)
+||+|+|+.+ +||. .+ ...+|.++.|+|||||+|+++++ . ..++.+.|...+... | .. ....+
T Consensus 114 ~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~-~---~~~l~~~~~~~~~~~----~---~~-~~~~~ 180 (313)
T 3bgv_A 114 CFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTP-N---SFELIRRLEASETES----F---GN-EIYTV 180 (313)
T ss_dssp CEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE-C---HHHHHHHHTTSSSSE----E---EC-SSEEE
T ss_pred CEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC-C---hHHHHHHHHhhccCc----c---CC-eeEEE
Confidence 9999999876 6665 44 35999999999999999999974 2 234444332211100 0 00 00111
Q ss_pred eeccchhHHHHHHhcCCCC-CccCCCCCCccccCCCHHHHHhhc
Q 008262 414 WKKPTNNSCYLNREAGTIP-PLCDPDDNPDNVWYVDLKACITRL 456 (572)
Q Consensus 414 w~kpl~~~c~ll~~aGF~~-p~cd~~~~~~~~wY~~l~~~L~~L 456 (572)
......+....+.+.||.. +..+ .......|.++.++++++
T Consensus 181 ~f~~~~~~~~~~~~~~f~l~~~~~--~~~~~~~~~~~~~l~~~~ 222 (313)
T 3bgv_A 181 KFQKKGDYPLFGCKYDFNLEGVVD--VPEFLVYFPLLNEMAKKY 222 (313)
T ss_dssp EESCSSCCCSSCCEEEEEEC---C--CEEECCCHHHHHHHGGGG
T ss_pred EeCCCCCCCCccceEEEEECCccc--CcceEEcHHHHHHHHHHc
Confidence 1111111111223455544 3333 445668889999999988
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=122.41 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=79.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||+|||+|.++..|++. +|+|+|+++.++..++... ...+....+...|...++++ ++||+|+|....++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKA-KERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 35679999999999999988876 8999999999887665433 33455555666677778765 68999998654444
Q ss_pred ccC--ChHHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTR--DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~--d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. +...+|.++.++|||||.+++..
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 432 34689999999999999999875
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=120.89 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=81.0
Q ss_pred ccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC-cEEEe
Q 008262 251 FIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAA 326 (572)
Q Consensus 251 f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~ 326 (572)
|..+.......+.+.+... ..+..+|||+|||+|.++..+++. +|+++|+++.++..++.. +...+.. ..+..
T Consensus 39 f~~~~~~~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~ 115 (205)
T 3grz_A 39 FGTGNHQTTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEEN-AALNGIYDIALQK 115 (205)
T ss_dssp ---CCHHHHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCCCEEEE
T ss_pred cCCCCCccHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEe
Confidence 3333334444444444422 135689999999999999888765 799999999888666543 3334444 34444
Q ss_pred ccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 327 FATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 327 ~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.|.. .+.+++||+|+++....+ ...++.++.++|||||++++++.
T Consensus 116 ~d~~--~~~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 116 TSLL--ADVDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp SSTT--TTCCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred cccc--ccCCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEEec
Confidence 4443 345689999999866443 37899999999999999999864
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.5e-12 Score=115.72 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccc-
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT- 329 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~- 329 (572)
+.....+.+.+. ..+..+|||+|||+|.++..+++. +|+++|+++.++..++. .+...+.. ..+...+.
T Consensus 11 ~~~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~ 85 (178)
T 3hm2_A 11 QHVRALAISALA----PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS-NAINLGVSDRIAVQQGAP 85 (178)
T ss_dssp HHHHHHHHHHHC----CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH-HHHTTTCTTSEEEECCTT
T ss_pred HHHHHHHHHHhc----ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HHHHhCCCCCEEEecchH
Confidence 344445555554 245679999999999999988765 79999999988865543 33334444 33333333
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.++..+++||+|++..++.+ ..++.++.++|||||.+++.+.
T Consensus 86 ~~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 86 RAFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hhhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 444443489999999876444 6799999999999999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=114.89 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec-ccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS-RCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss-~~l~h 350 (572)
+..+|||+|||+|.++..+++. +|+++|+++.++.. ++++.....+...+...+++++++||+|+++ .++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~-----a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDY-----AKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHH-----HHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHH-----HHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 5679999999999999988876 79999999877643 3333333445556777788888999999998 45444
Q ss_pred cc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ++...++.++.++|||||.+++...
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 42 2236899999999999999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=129.25 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=78.2
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHH----------------H
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFAL----------------E 317 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~----------------~ 317 (572)
..++.+.+.+... ..+..+|||||||+|.++..++. .+|+|+|+|+.|+..++..... .
T Consensus 56 ~~~~~l~~~l~~~--~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~ 133 (289)
T 2g72_A 56 WKLRCLAQTFATG--EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI 133 (289)
T ss_dssp HHHHHHHHHHHTS--CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHh
Confidence 3344555554311 13568999999999996544433 2799999999988655432110 0
Q ss_pred cCC--------------CcEEEeccccC-CCC-----CCCCeeEEEecccccccc---CChHHHHHHHHHhccCCeEEEE
Q 008262 318 RGA--------------PAMVAAFATRR-LPY-----PSQAFDLIHCSRCRINWT---RDDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 318 rg~--------------~~~~~~~d~e~-LPf-----p~~sFDlI~ss~~l~hw~---~d~~~~L~ei~RvLKPGG~lv~ 374 (572)
.+. ...+...|+.. +|+ ++++||+|+|+.++++.. .+...+|.++.|+|||||+|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~ 213 (289)
T 2g72_A 134 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 213 (289)
T ss_dssp HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 110 01233335555 654 456799999998866643 4567999999999999999999
Q ss_pred EE
Q 008262 375 AA 376 (572)
Q Consensus 375 st 376 (572)
+.
T Consensus 214 ~~ 215 (289)
T 2g72_A 214 IG 215 (289)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-12 Score=134.00 Aligned_cols=122 Identities=17% Similarity=0.098 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
+....++.+.+.+.. ...+..+|||+|||+|.++..+++. +|+++|+++.++..++.. +...+....+...|...
T Consensus 215 ~t~~ll~~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n-~~~~~~~v~~~~~D~~~ 291 (381)
T 3dmg_A 215 ASLLLLEALQERLGP--EGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKG-LEANALKAQALHSDVDE 291 (381)
T ss_dssp HHHHHHHHHHHHHCT--TTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHH-HHHTTCCCEEEECSTTT
T ss_pred HHHHHHHHHHHhhcc--cCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEcchhh
Confidence 344555555554421 1235679999999999999988876 899999999888666543 33445555566667777
Q ss_pred CCCCCCCeeEEEeccccccc----cCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 332 LPYPSQAFDLIHCSRCRINW----TRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw----~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
.+.++++||+|+|+..+++. ..+...++.++.++|||||.++++..+
T Consensus 292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 77767899999998775541 233468999999999999999999753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=127.12 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCCchhHHHhcc--C---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP--R---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~--~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+..+|||||||+|.++..|+. . +|+++|+++.++..+... +...+.. ..+...|...++++ ++||+|+|+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 194 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRL-AAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN 194 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHH-HTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHH-HHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence 4568999999999999999852 2 799999999888655433 3333333 44566678888887 999999998
Q ss_pred cccccccCChH---HHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~---~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++|+ .++. .++.++.|+|||||++++++.
T Consensus 195 ~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 195 GLNIYE-PDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp SSGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred Chhhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 887776 5654 379999999999999999863
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=117.78 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 353 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~ 353 (572)
+..+|||||||+|.++..+. .+|+++|+++. . ..+...+.+.+++++++||+|+|..++ |+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------------~--~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NPVHCFDLASL-------------D--PRVTVCDMAQVPLEDESVDVAVFCLSL-MG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SCEEEEESSCS-------------S--TTEEESCTTSCSCCTTCEEEEEEESCC-CS-S
T ss_pred CCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC-------------C--ceEEEeccccCCCCCCCEeEEEEehhc-cc-c
Confidence 45789999999999998885 68999999985 1 224455778889988999999998875 55 7
Q ss_pred ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 354 DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 354 d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+...+|.++.++|||||++++++.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEc
Confidence 889999999999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=123.50 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||||||+|.++..+++. +|+++|+++.++ +.++++.....+...+.+.+++++++||+|++..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-----KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA- 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-----HHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-
Confidence 35679999999999999888764 799999998876 44444544445666678889998899999998644
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHH
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 386 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL 386 (572)
...+.++.|+|||||.+++.++ ......++
T Consensus 158 -------~~~l~~~~~~L~pgG~l~~~~~-~~~~~~~~ 187 (269)
T 1p91_A 158 -------PCKAEELARVVKPGGWVITATP-GPRHLMEL 187 (269)
T ss_dssp -------CCCHHHHHHHEEEEEEEEEEEE-CTTTTHHH
T ss_pred -------hhhHHHHHHhcCCCcEEEEEEc-CHHHHHHH
Confidence 2358999999999999999974 44444443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=118.87 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC---CCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP---SQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp---~~sFDlI~ss 345 (572)
+..+|||||||+|.++..|+. .+|+++|+++.++..++.. +...+.. ..+...+.+.+++. +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKL-SEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHH-HHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467999999999998888773 2799999999988666543 3334543 44555566777654 6799999986
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHH
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 386 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL 386 (572)
.+ .+...++.++.++|||||+|++.. +....+++
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~--g~~~~~~~ 182 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALK--AASAEEEL 182 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE--CC-CHHHH
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEe--CCCchHHH
Confidence 52 667899999999999999999875 33444443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=123.32 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCcc------chHHHHHHHHHHcCC--C
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPK------DVHENQIQFALERGA--P 321 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~------dl~~a~~~~A~~rg~--~ 321 (572)
+......+.+.+. ..+..+|||||||+|.++..+++ .+|+|+|+++. ++..++... ...+. .
T Consensus 28 ~~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~ 102 (275)
T 3bkx_A 28 QTAHRLAIAEAWQ----VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDR 102 (275)
T ss_dssp HHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGG
T ss_pred HHHHHHHHHHHcC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCc
Confidence 4445555555554 24678999999999999888775 37999999987 776554333 33333 2
Q ss_pred cEEEecc---ccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 322 AMVAAFA---TRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 322 ~~~~~~d---~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+...| ...+|+++++||+|+|..+++|+ .++..+++.+.++++|||++++.+.
T Consensus 103 v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYF-ASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp EEEECSCCTTTCCGGGTTCCCSEEEEESCGGGS-SCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred eEEEECChhhhccCCCCCCCEEEEEEccchhhC-CCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3344444 45667788999999999887776 7777777777777777999999864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=114.73 Aligned_cols=111 Identities=13% Similarity=-0.018 Sum_probs=79.7
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L 332 (572)
....+.+.+. ..+..+|||+|||+|.++..+++. +|+++|+++.++..++.... ..+.. ..+...|....
T Consensus 28 i~~~~l~~l~----~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 28 VRAVTLSKLR----LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLK-KFVARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHTT----CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHH-HHTCTTEEEEECCTTTT
T ss_pred HHHHHHHHcC----CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCcEEEEeCChhhh
Confidence 3344555554 245689999999999998888764 69999999998866654433 33443 33444455333
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....++||+|++..... +...++.++.++|||||.+++.+.
T Consensus 103 ~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 32337899999876532 668999999999999999999864
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-12 Score=125.58 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=78.3
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC-
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY- 334 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf- 334 (572)
.++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+|+.|+..++.+.. .. ....+.+.++.
T Consensus 33 ~~~~il~~l~----l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~-----~~-~v~~~~~~~~~~ 102 (261)
T 3iv6_A 33 DRENDIFLEN----IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALA-----DR-CVTIDLLDITAE 102 (261)
T ss_dssp HHHHHHHTTT----CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTS-----SS-CCEEEECCTTSC
T ss_pred HHHHHHHhcC----CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-----hc-cceeeeeecccc
Confidence 3455555554 246689999999999999999876 89999999998854442221 11 11122333332
Q ss_pred ----CCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 ----PSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 ----p~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++||+|+|+.+++|+.. +...++.++.++| |||.++++..
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 2578999999988777743 3468999999999 9999999974
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-12 Score=125.76 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCC-CCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPY-PSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPf-p~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++.. +|+|+|+++.++..+.... ...+. ...+...|...+++ ++++||+|+|..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45689999999999988877653 7999999999886655333 22333 23455567788887 688999999998
Q ss_pred ccccc---cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINW---TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw---~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++|. ..+...+|.++.|+|||||+++++++
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 76552 24457899999999999999999974
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-12 Score=129.44 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC------------------------------
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG------------------------------ 319 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg------------------------------ 319 (572)
+..+|||||||+|.++..|+.. +|+|+|+++.++..+.........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5689999999999999888764 899999999988665533211100
Q ss_pred ----------------------------CCcEEEeccccCC-----CCCCCCeeEEEecccccccc---C--ChHHHHHH
Q 008262 320 ----------------------------APAMVAAFATRRL-----PYPSQAFDLIHCSRCRINWT---R--DDGILLLE 361 (572)
Q Consensus 320 ----------------------------~~~~~~~~d~e~L-----Pfp~~sFDlI~ss~~l~hw~---~--d~~~~L~e 361 (572)
....+...|.... ++.+++||+|+|..++.+++ . +...+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 1123333444332 35678999999988753331 1 44689999
Q ss_pred HHHhccCCeEEEEEEC
Q 008262 362 VNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 362 i~RvLKPGG~lv~st~ 377 (572)
++++|||||+|++...
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999999853
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-11 Score=115.04 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||||||+|.++..++.. +|+++|+++.++..++. .+...+.. ..+...|..........||+|++....
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~ 132 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG 132 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence 45689999999999999888775 89999999998866553 34445554 345555555522223579999987532
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. ++.++.++|||||.+++++.
T Consensus 133 -----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 133 -----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp -----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred -----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 556 99999999999999999974
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=116.72 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
+..+|||||||+|.++..++.. +|+|+|+++.++..+.... ...++. ..+...|...++ +++++||+|+++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKV-LEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHH-HHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 4578999999999998888754 7999999999886665433 334443 345556677776 7788999999875
Q ss_pred ccccccC--------ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~--------d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .+|.. ....++.++.++|||||.+++.+.
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred C-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 4 44422 125799999999999999999873
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=121.35 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC-CC--CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR-LP--YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~-LP--fp~~sFDlI~ss 345 (572)
...+|||||||+|.++..|+.. .|+|+|+++.++..+.. .+...++.+ .+...|+.. ++ +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~-~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLA-SAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5678999999999999888754 59999999998876653 444455543 444556555 34 678999999987
Q ss_pred cccccccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ..|.... ..++.++.|+|||||.|++++.
T Consensus 113 ~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 43 4553332 2599999999999999999974
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=121.74 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-----CCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-----QAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~-----~sFDlI~ss 345 (572)
.+..+|||||||+|.++..|++. +|+++|+++.++..+.... ......+...|...+++.. ..||+|+|.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEc
Confidence 35678999999999999998876 8999999998875443222 1123345555666554321 249999999
Q ss_pred cccccccC--ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~--d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++|. . +...+|.++.++|||||++++..+
T Consensus 132 ~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 TGFHHI-PVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSSTTS-CGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred chhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 876665 5 557999999999999999988874
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=118.70 Aligned_cols=101 Identities=11% Similarity=0.178 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
+..+|||||||+|.++..|+.. +|+|+|+++.++..+.. .+...+.. ..+...|+..++ +++++||.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~-~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 4578999999999999888754 79999999998866654 33444554 345555666665 7788999999764
Q ss_pred ccccccCC--------hHHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRD--------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d--------~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ..|... ...++.++.++|||||.|++.+
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3 344321 2579999999999999999987
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=116.30 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----LPfp~~sFDlI~s 344 (572)
.++.+|||+|||+|.++..|++ ..|+|+|+|+.|+... .+.++.+. ...+...|... .++. ++||+|+|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~-~~~a~~~~-~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKL-LELVRERN-NIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHH-HHHHHHCS-SEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHhcCC-CeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 4668999999999998887765 3799999999877433 34555442 23333345444 3454 79999998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+. ..+ .+...++.+++|+|||||+|+++.
T Consensus 133 ~~-~~~--~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI-AQK--NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC-CST--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-cCh--hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 72 121 222356999999999999999985
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=113.85 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC-CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP-YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LP-fp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..+++. +|+++|+++.++..++.. +...+. ...+...|.+.++ +.+++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-HHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 35679999999999988887764 799999999888666543 333444 2345555666665 66789999998
Q ss_pred ccccccc-----cC---ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINW-----TR---DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw-----~~---d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+...+.. .. +...++.++.++|||||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 7654221 11 224799999999999999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=121.25 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC-----------------------------
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA----------------------------- 320 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~----------------------------- 320 (572)
.+..+|||||||+|.++..++.. +|+++|+++.++..+...... .+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK-EPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT-CTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc-CCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 35678999999999999888765 799999999988665433211 110
Q ss_pred -Cc-EEEeccccCCC-CCC---CCeeEEEecccccccc---CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 321 -PA-MVAAFATRRLP-YPS---QAFDLIHCSRCRINWT---RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 321 -~~-~~~~~d~e~LP-fp~---~sFDlI~ss~~l~hw~---~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. .+...|...++ +++ ++||+|+|..++++.. .+...+|.++.|+|||||+|++...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 02 34455665543 355 8999999998877443 3457999999999999999999873
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=109.75 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=75.4
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--------fp~~sF 339 (572)
.+..+|||+|||+|.++..+++ .+++++|+++ ++.. ....+...|...++ +++++|
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 4567999999999998887764 3799999999 6521 22334455666665 677899
Q ss_pred eEEEeccccccccCCh-----------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 340 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~-----------~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
|+|+++.. .++..+. ..++.++.++|||||.++++++ ......++.+
T Consensus 90 D~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~ 147 (180)
T 1ej0_A 90 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF-QGEGFDEYLR 147 (180)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-SSTTHHHHHH
T ss_pred eEEEECCC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe-cCCcHHHHHH
Confidence 99999765 4444554 6899999999999999999874 3444444433
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=117.62 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC---CcEEEec
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAF 327 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~---~~~~~~~ 327 (572)
..+.+.+.+.+.+... .+..+|||+|||+|.++..++.+ .|+++|+++.++..++.+. ...+. ...+...
T Consensus 36 ~~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~v~~~~~ 111 (201)
T 2ift_A 36 TGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNL-QTLKCSSEQAEVINQ 111 (201)
T ss_dssp --CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH-HHTTCCTTTEEEECS
T ss_pred CHHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHH-HHhCCCccceEEEEC
Confidence 3445555555555421 13578999999999999875544 6999999999987665443 34454 3345555
Q ss_pred cccCC-C-CCCCC-eeEEEeccccccccCChHHHHHHH--HHhccCCeEEEEEEC
Q 008262 328 ATRRL-P-YPSQA-FDLIHCSRCRINWTRDDGILLLEV--NRMLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~L-P-fp~~s-FDlI~ss~~l~hw~~d~~~~L~ei--~RvLKPGG~lv~st~ 377 (572)
|...+ + +++++ ||+|++... .+. .+...++.++ .|+|||||.+++++.
T Consensus 112 d~~~~~~~~~~~~~fD~I~~~~~-~~~-~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 112 SSLDFLKQPQNQPHFDVVFLDPP-FHF-NLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CHHHHTTSCCSSCCEEEEEECCC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CHHHHHHhhccCCCCCEEEECCC-CCC-ccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 55443 3 23678 999999866 343 4557888888 678999999999874
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=114.06 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=80.3
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP 333 (572)
.....+.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+..... ..+.. ..+...|.....
T Consensus 64 ~~~~~~~~~l~----~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 64 YMVARMTELLE----LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLK-NLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcC----CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCceEEEECCcccCC
Confidence 34455555554 246789999999999999888765 89999999988866654333 33443 345555666655
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+++||+|++..++.++ .+ ++.++|||||+++++..
T Consensus 139 ~~~~~~D~i~~~~~~~~~-~~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEI-PT------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp GGGCCEEEEEESSBCSSC-CT------HHHHTEEEEEEEEEEEC
T ss_pred ccCCCccEEEEccchhhh-hH------HHHHhcccCcEEEEEEc
Confidence 567899999998776665 33 68999999999999964
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=112.49 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=87.5
Q ss_pred eeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc
Q 008262 242 FKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER 318 (572)
Q Consensus 242 ~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r 318 (572)
+.++.+. ......+.+.+.+.+.+... .+..+|||+|||+|.++..++.. +|+++|+++.++..++.... ..
T Consensus 16 ~~~~~~~-~~rp~~~~~~~~~~~~l~~~---~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~ 90 (187)
T 2fhp_A 16 LKALDGD-NTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA-IT 90 (187)
T ss_dssp CCCCCCC-SSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HH
T ss_pred ccCCCCC-CcCcCHHHHHHHHHHHHHhh---cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH-Hh
Confidence 4444332 33445566777777776522 35679999999999998877654 79999999998876654433 33
Q ss_pred CCC--cEEEeccccC----CCCCCCCeeEEEeccccccccCChHHHHHHH--HHhccCCeEEEEEEC
Q 008262 319 GAP--AMVAAFATRR----LPYPSQAFDLIHCSRCRINWTRDDGILLLEV--NRMLRAGGYFAWAAQ 377 (572)
Q Consensus 319 g~~--~~~~~~d~e~----LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei--~RvLKPGG~lv~st~ 377 (572)
+.. ..+...|... +++.+++||+|+++.. .+. .+....+..+ .++|||||.+++...
T Consensus 91 ~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 91 KEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCc-hhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 432 3344445433 2233679999999866 332 4556777777 899999999999864
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=124.66 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+..+|||||||+|.++..+++. +|+|+|+++ ++..+. +.+...+.. ..+...+.+.+++++++||+|+|..+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 4689999999999999988876 799999995 775554 444555554 456667888999988999999986532
Q ss_pred --ccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 349 --INWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 --~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
++...+...++.++.|+|||||+++..
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 333356689999999999999998754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.7e-11 Score=117.00 Aligned_cols=109 Identities=17% Similarity=0.005 Sum_probs=80.4
Q ss_pred CCCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC---CCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP---SQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp---~~sFDlI~s 344 (572)
.+..+|||||||+|..+..|+. .+|+++|+++.++..++. .+...++. ..+...+.+.++.. +++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER-AIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3568999999999988777664 279999999998866554 34444554 34555566766643 479999998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHH
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 389 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~ 389 (572)
..+ .+...++.++.++|||||+|++.. +....+|+.+.
T Consensus 158 ~a~-----~~~~~ll~~~~~~LkpgG~l~~~~--g~~~~~e~~~~ 195 (249)
T 3g89_A 158 RAV-----APLCVLSELLLPFLEVGGAAVAMK--GPRVEEELAPL 195 (249)
T ss_dssp ESS-----CCHHHHHHHHGGGEEEEEEEEEEE--CSCCHHHHTTH
T ss_pred CCc-----CCHHHHHHHHHHHcCCCeEEEEEe--CCCcHHHHHHH
Confidence 643 456899999999999999998875 44555655443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.2e-11 Score=122.78 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=81.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~ 331 (572)
.+.+.+.+.+. ..+..+|||||||+|.++..+++. +|+|+|+++ ++..++ +.+...+. ...+...+++.
T Consensus 51 ~~~~~i~~~~~----~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 51 SYRDFIYQNPH----IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHCGG----GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHhhhh----hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHH
Confidence 44555555544 245679999999999999888765 799999997 775554 33444444 33455667888
Q ss_pred CCCCCCCeeEEEecccc--ccccCChHHHHHHHHHhccCCeEEE
Q 008262 332 LPYPSQAFDLIHCSRCR--INWTRDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l--~hw~~d~~~~L~ei~RvLKPGG~lv 373 (572)
+++++++||+|+|..+. ++...+...++.++.|+|||||.++
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 88888899999987532 2222445689999999999999998
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=108.26 Aligned_cols=109 Identities=8% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L 332 (572)
....+.+.+.+. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+.... ...+.. ..+...|...
T Consensus 21 ~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 21 EEIRAVSIGKLN----LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNL-AKFNIKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHHC----CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHH-HHTTCCSEEEEESCHHH-
T ss_pred HHHHHHHHHHcC----CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HHcCCCcEEEEECCccc-
Confidence 445555655554 245679999999999999888765 7999999998886655433 334443 3344445544
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++++||+|++..+ .+...++.++.++ |||.+++.+.
T Consensus 95 ~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 566689999999866 5668999999999 9999999974
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-11 Score=111.06 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=82.2
Q ss_pred cccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 252 IHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 252 ~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
....+.+.+.+.+.+... ..+..+|||+|||+|.++..++.. .|+++|+++.++..+...... .+....+...|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~d~ 97 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRR-TGLGARVVALPV 97 (171)
T ss_dssp CCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH-HTCCCEEECSCH
T ss_pred CCCHHHHHHHHHHHHHhh--ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH-cCCceEEEeccH
Confidence 334455566666655421 114578999999999999888876 699999999988766544433 333444555554
Q ss_pred cC-CC-C--CCCCeeEEEeccccccccCChHHHHHHHH--HhccCCeEEEEEEC
Q 008262 330 RR-LP-Y--PSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~-LP-f--p~~sFDlI~ss~~l~hw~~d~~~~L~ei~--RvLKPGG~lv~st~ 377 (572)
.. ++ + ..++||+|+++..++ .+...++..+. ++|||||.+++++.
T Consensus 98 ~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 98 EVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 43 22 1 134899999986533 45567777777 99999999999975
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=133.05 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHH-----cCCC-c
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALE-----RGAP-A 322 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~-----rg~~-~ 322 (572)
.....++.+.+.+.. .+..+|||||||+|.++..|++. +|+|+|+++.|+..++.+.... .+.. .
T Consensus 705 L~eqRle~LLelL~~----~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nV 780 (950)
T 3htx_A 705 LSKQRVEYALKHIRE----SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780 (950)
T ss_dssp HHHHHHHHHHHHHHH----SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEE
T ss_pred HHHHHHHHHHHHhcc----cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCce
Confidence 345556666666652 35689999999999999999865 5999999999987765443322 1332 3
Q ss_pred EEEeccccCCCCCCCCeeEEEeccccccccCChH--HHHHHHHHhccCCeEEEEEEC
Q 008262 323 MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 323 ~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~--~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+...|...+++.+++||+|+|..+++|+ .+.. .++.++.|+|||| .++++++
T Consensus 781 efiqGDa~dLp~~d~sFDlVV~~eVLeHL-~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHM-EEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEESCTTSCCTTSCSCCEEEEESCGGGS-CHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEECchHhCCcccCCeeEEEEeCchhhC-ChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45667888999999999999999887777 4443 6899999999999 8888874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=120.18 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCCCEEEEECCCCchhHHHh-c---cCCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYL-L---PRNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L-~---~~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.++.+|||||||+|.++..+ + ..+|+|+|+++.++..++...+ ..+.. ..+...|...++ +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~-~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE-GLGVDGVNVITGDETVID--GLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHH-HHTCCSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH-hcCCCCeEEEECchhhCC--CCCcCEEEECCC
Confidence 57799999999999765433 2 3389999999999977765443 33443 345555666665 789999997543
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+...++.++.|+|||||.|++..
T Consensus 198 ----~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 ----AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ----CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ----ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 3777899999999999999999986
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-11 Score=114.06 Aligned_cols=118 Identities=9% Similarity=0.020 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-PAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~ 329 (572)
..+...+.+.+.+... .+..+|||+|||+|.++..++.+ +|+++|+++.++..++.+ +...+. ...+...|.
T Consensus 37 ~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~D~ 112 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-LATLKAGNARVVNSNA 112 (202)
T ss_dssp -CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSEEEECSCH
T ss_pred CHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCH
Confidence 3445556666655421 14578999999999999875544 799999999998766543 334444 334555565
Q ss_pred cC-CCCCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEEC
Q 008262 330 RR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~-LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st~ 377 (572)
.. ++..+++||+|++... .+. .+...++.++.+ +|||||.+++++.
T Consensus 113 ~~~~~~~~~~fD~V~~~~p-~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 113 MSFLAQKGTPHNIVFVDPP-FRR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHSSCCCCEEEEEECCS-SST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHhhcCCCCCEEEECCC-CCC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 44 5666789999998765 343 556788888866 5999999999864
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=119.31 Aligned_cols=97 Identities=13% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LP---fp~~sFDlI~ss 345 (572)
.+..+|||||||||.++..|++. +|+|+|+++.|+..+ .......... ..++..++ ++..+||+|+|.
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a-----~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d 158 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWK-----LRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASID 158 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHH-----HHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcccceecccCceecchhhCCCCCCCEEEEE
Confidence 35679999999999999888765 799999999998542 2222222111 11223332 344569999987
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEECC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 378 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P 378 (572)
.++++ ...+|.++.|+|||||.|++...|
T Consensus 159 ~sf~s----l~~vL~e~~rvLkpGG~lv~lvkP 187 (291)
T 3hp7_A 159 VSFIS----LNLILPALAKILVDGGQVVALVKP 187 (291)
T ss_dssp CSSSC----GGGTHHHHHHHSCTTCEEEEEECG
T ss_pred eeHhh----HHHHHHHHHHHcCcCCEEEEEECc
Confidence 66443 488999999999999999998543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=118.14 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=74.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH-----HcCCC-cEEEeccccC-CC--CCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL-----ERGAP-AMVAAFATRR-LP--YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~-----~rg~~-~~~~~~d~e~-LP--fp~~sF 339 (572)
.+..+|||||||+|.++..|+.. .|+|+|+++.++..++..... ..+.. ..+...|+.. ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34578999999999999998865 699999999998766543322 12333 3445556665 66 788999
Q ss_pred eEEEeccccccccCC--------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l~hw~~d--------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|.|++... ..|... ...+|.++.|+|||||.|++.+.
T Consensus 125 D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99987543 334221 14799999999999999999873
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=123.59 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=82.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~ 331 (572)
.+.+.|.+.+. ..+..+|||||||+|.++..++++ +|+|+|++ .++..+. +.+...+.. ..+...+++.
T Consensus 50 ~~~~~i~~~~~----~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 50 AYFNAVFQNKH----HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHTTTT----TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHhccc----cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhh
Confidence 44445544433 245689999999999999988876 79999999 7886554 444555554 4566667888
Q ss_pred CCCCCCCeeEEEecccccccc--CChHHHHHHHHHhccCCeEEEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWT--RDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~--~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
++++ ++||+|+|..+..... .+...++.+++|+|||||+++++
T Consensus 124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 8877 8999999965323322 34578999999999999999875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.3e-11 Score=123.03 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCC--CCCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL--PYPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~L--Pfp~~sFDlI~ss 345 (572)
...+|||||||+|.++..++++ +++++|+ +.++..+.. .+.+.+. ...+...|.... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 4589999999999999988763 7999998 777755443 2223333 234555566554 566 789999999
Q ss_pred cccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++++|..+. ..+|++++|+|||||++++.+.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 9988884332 4889999999999999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=108.75 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=79.3
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR 331 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~ 331 (572)
......+.+.+. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+..... ..+. ...+...+...
T Consensus 19 ~~~~~~~~~~~~----~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAE----PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ-RHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHC----CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HTTCCTTEEEEESCHHH
T ss_pred HHHHHHHHHhcC----CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecCHHH
Confidence 344444555544 245689999999999999888876 79999999988866554333 3344 23344444433
Q ss_pred CCCCC-CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPS-QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~-~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++ ++||+|++..++. +...++.++.++|+|||.+++...
T Consensus 94 -~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp -HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -hcccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 2232 5899999876543 458999999999999999999864
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=108.79 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~ 352 (572)
+..+|||+|||+|.++..|+++ +|+|+|+++.++.. .....+...|... ++++++||+|+|+..+++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~- 91 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPD- 91 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTT-
T ss_pred CCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCccC-
Confidence 4569999999999999999887 89999999987733 1223344455555 6667899999998764433
Q ss_pred CCh---------HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 353 RDD---------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 353 ~d~---------~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
.+. ..++.++.+.| |||.+++... ......++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~-~~~~~~~l~~ 134 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI-EANRPKEVLA 134 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE-GGGCHHHHHH
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEEe-cCCCHHHHHH
Confidence 332 57899999999 9999999863 3344444433
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-11 Score=114.76 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=75.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH----HcCCC-cEEEeccccCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGAP-AMVAAFATRRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~----~rg~~-~~~~~~d~e~LPfp~~sFDlI~ 343 (572)
.+..+|||||||+|.++..|++. +|+|+|+++.|+..... .++ ..+.. ..+...|.+.+|+++++ |.|+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~-~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA-KAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHH-HHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 35678999999999999888765 79999999999864322 222 23443 34556688889988777 8777
Q ss_pred ecccc--c--cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCR--I--NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l--~--hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..... . |+..++..+|.++.|+|||||.++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 43211 1 244666899999999999999999974
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=113.47 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=75.1
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
.+..+|||+||| +|.++..++.. +|+++|+++.++..++.. +...+....+...|... .++++++||+|+|+..
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRN-IERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 356899999999 99998887754 799999999988666543 33445445555555433 3466789999999865
Q ss_pred cccccC------------------ChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTR------------------DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~------------------d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.++... ....++.++.++|||||++++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 433211 12678999999999999999975
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=117.60 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=78.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCC---chhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGV---ASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGt---G~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
.+++++.+.+.. .....+|||||||+ |.++..+.. .+|+++|+|+.|+..++.... ......+...|.
T Consensus 63 ~~~~~~~~~l~~---~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~ 137 (274)
T 2qe6_A 63 KVLVRGVRFLAG---EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADV 137 (274)
T ss_dssp HHHHHHHHHHHT---TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCT
T ss_pred HHHHHHHHHHhh---ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeC
Confidence 344444444431 12457999999999 987765543 389999999999866554331 112234445555
Q ss_pred cCCC-----------CCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLP-----------YPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LP-----------fp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...+ ++..+||+|++..+++|+.++ ...+|+++.++|||||+|+++..
T Consensus 138 ~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 138 RDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 4311 223489999998876666332 67999999999999999999975
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=118.95 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCC-ccchHHHH--HHHHHHcCCC-cEEEeccccCCCCC-CCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIA-PKDVHENQ--IQFALERGAP-AMVAAFATRRLPYP-SQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiS-p~dl~~a~--~~~A~~rg~~-~~~~~~d~e~LPfp-~~sFDlI~ 343 (572)
.+..+|||||||+|.++..|+.+ .|+|+|+| +.|+..+. .+.+...+.. ..+...+.+.+|.. .+.+|.|+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 35678999999999999998843 69999999 66654331 1122233444 34555677777632 25566666
Q ss_pred ecccc----ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCR----INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l----~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++... .++..+...+|.+++|+|||||.|++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 54321 1222344678999999999999999954
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-11 Score=118.87 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=78.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc---cc
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---TR 330 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d---~e 330 (572)
+..|..-+..+ ..+++.+|||+|||+|.++..|++. .|+++|+++.|+..+. +.+.+++ .......+ .+
T Consensus 63 aa~i~~gl~~l-~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~~-ni~~V~~d~~~p~ 139 (233)
T 4df3_A 63 AAALLKGLIEL-PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDRR-NIFPILGDARFPE 139 (233)
T ss_dssp HHHHHTTCSCC-CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTCT-TEEEEESCTTCGG
T ss_pred HHHHHhchhhc-CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhhc-CeeEEEEeccCcc
Confidence 33444444432 2468899999999999999999864 6999999999986554 2333332 12222222 34
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..++..+++|+|++.. ....+...++.++.|+|||||+++++.
T Consensus 140 ~~~~~~~~vDvVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 140 KYRHLVEGVDGLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp GGTTTCCCEEEEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceEEEEEEec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 4567778999999752 232456789999999999999999984
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=110.83 Aligned_cols=102 Identities=14% Similarity=0.019 Sum_probs=75.5
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
..+|||+|||+|.++..++.. +|+++|+++.++..+.. .+...+.. ..+...+...++ +.++||+|+|...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQ-VQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 579999999999988887743 79999999988865553 33334443 344455666655 4578999997542
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~E 385 (572)
.+...++.++.++|||||++++.. +....++
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~--~~~~~~~ 172 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALK--GQMPEDE 172 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE--SSCCHHH
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEe--CCCchHH
Confidence 556899999999999999999986 3344443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=116.88 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..+++. +|+++|+++.++..+..+ +...+....+...+... ++++++||+|+++....+
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n-~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~- 196 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEAN-AKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL- 196 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHH-HHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH-
T ss_pred CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH-
Confidence 4689999999999998888765 799999999988666543 33444433343334333 144678999998754322
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...++.++.++|||||+++++..
T Consensus 197 ---~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 197 ---HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEee
Confidence 36899999999999999999863
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=113.20 Aligned_cols=112 Identities=11% Similarity=0.135 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC--CCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
+..+|||+|||+|.++..++.+ +|+|+|+++.++..++.... ..++. ..+...|...++ +++++||+|+|+.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~-~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA-YNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH-HTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH-HCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 5689999999999999998876 79999999988866654433 34443 345555666654 5578999999975
Q ss_pred ccccc----c---------------CChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 347 CRINW----T---------------RDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 347 ~l~hw----~---------------~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
..... . .+...++.++.++|||||.|++... .....++..
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~ 186 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR--PERLLDIID 186 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC--TTTHHHHHH
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc--HHHHHHHHH
Confidence 43222 0 1224799999999999999999853 344444433
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-10 Score=118.72 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++++ +++++|+ +.++..+..... +.++ ...+...|.. .+++. .||+|++..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT-GRGLADRCEILPGDFF-ETIPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh-hcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence 45689999999999999888764 7899999 877765554333 3333 2345555554 45665 899999999
Q ss_pred ccccccCChH--HHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~--~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++| ++.. .+|++++++|||||+|++.+.
T Consensus 277 vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 277 VLHDW-DDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CGGGS-CHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred hhccC-CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 98888 5543 799999999999999999864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-11 Score=111.62 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~ 329 (572)
.+...+.+.+.+... .+..+|||+|||+|.++..++.. +|+++|+++.++..++. .+...+.. ..+...|.
T Consensus 15 ~~~~~~~~~~~l~~~---~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~ 90 (177)
T 2esr_A 15 SDKVRGAIFNMIGPY---FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEA 90 (177)
T ss_dssp ---CHHHHHHHHCSC---CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCH
T ss_pred HHHHHHHHHHHHHhh---cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcH
Confidence 344455565555421 35679999999999999888765 79999999988866553 33334442 33444454
Q ss_pred cC-CCCCCCCeeEEEeccccccccCChHHHHHHHH--HhccCCeEEEEEEC
Q 008262 330 RR-LPYPSQAFDLIHCSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~-LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~--RvLKPGG~lv~st~ 377 (572)
.. ++..+++||+|+++... +. ......+..+. ++|||||.+++.+.
T Consensus 91 ~~~~~~~~~~fD~i~~~~~~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 91 ERAIDCLTGRFDLVFLDPPY-AK-ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHHBCSCEEEEEECCSS-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHhHHhhcCCCCEEEECCCC-Cc-chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 44 34445679999987553 22 33456777776 99999999999974
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-11 Score=115.79 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
.+.+++.+.+.+.. ..+..+|||+|||+|.++..+++. +|+++|+++.++..++.... ..+....+...|..
T Consensus 14 ~~~~~~~~~~~l~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~d~~ 89 (215)
T 4dzr_A 14 TEVLVEEAIRFLKR---MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE-RFGAVVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHTT---CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHH
T ss_pred HHHHHHHHHHHhhh---cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HhCCceEEEEcchH
Confidence 45566666666652 145689999999999998888765 79999999998865543322 22222223333444
Q ss_pred CCCCCC-----CCeeEEEeccccccccCCh--------------------------HHHHHHHHHhccCCeEEEEEECCC
Q 008262 331 RLPYPS-----QAFDLIHCSRCRINWTRDD--------------------------GILLLEVNRMLRAGGYFAWAAQPV 379 (572)
Q Consensus 331 ~LPfp~-----~sFDlI~ss~~l~hw~~d~--------------------------~~~L~ei~RvLKPGG~lv~st~P~ 379 (572)
. ++++ ++||+|+|+...++. .+. ..++.++.++|||||++++... .
T Consensus 90 ~-~~~~~~~~~~~fD~i~~npp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~ 166 (215)
T 4dzr_A 90 E-WLIERAERGRPWHAIVSNPPYIPT-GEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV-G 166 (215)
T ss_dssp H-HHHHHHHTTCCBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC-T
T ss_pred h-hhhhhhhccCcccEEEECCCCCCC-ccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE-C
Confidence 4 4444 899999997543222 111 5788899999999999444433 3
Q ss_pred CCCHHHH
Q 008262 380 YKHEEAQ 386 (572)
Q Consensus 380 ~~tl~EL 386 (572)
.....++
T Consensus 167 ~~~~~~~ 173 (215)
T 4dzr_A 167 HNQADEV 173 (215)
T ss_dssp TSCHHHH
T ss_pred CccHHHH
Confidence 3444433
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=119.87 Aligned_cols=113 Identities=13% Similarity=0.207 Sum_probs=83.8
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e 330 (572)
..|.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++ ++..+. +.+...+. ...+...+.+
T Consensus 36 ~~y~~~i~~~l~~----~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~d~~ 109 (348)
T 2y1w_A 36 GTYQRAILQNHTD----FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHHHTGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhcccc----CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEcchh
Confidence 3456666666542 35689999999999999888765 799999996 664433 44444454 2345556777
Q ss_pred CCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~s 375 (572)
.++++ ++||+|+|..+..|+..+ ....+.++.++|||||.++++
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 77765 689999998877777544 468888999999999999865
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=115.88 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=84.0
Q ss_pred ccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cE
Q 008262 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AM 323 (572)
Q Consensus 249 ~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~ 323 (572)
..|..........+.+.+. ++.+|||+|||+|.++..++.. +|+|+|+++.++..++. .+...++. ..
T Consensus 106 ~~f~~~~~~~~~~l~~~~~------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~n~~~~~v~ 178 (278)
T 2frn_A 106 IMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKVEDRMS 178 (278)
T ss_dssp SCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTCTTTEE
T ss_pred eeEcCCcHHHHHHHHHhCC------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEE
Confidence 3343444444555555543 4689999999999999888764 49999999998866654 34444554 33
Q ss_pred EEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 324 VAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 324 ~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+...|...++. +++||+|++... .....++.++.++|||||++++.+.
T Consensus 179 ~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 179 AYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp EECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 55667777765 689999998643 3346889999999999999999864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-11 Score=122.23 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=81.4
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
...+.+.+.+.. ....+|||+|||+|.++..+++. +|+++|+++.++..+.... ...+....+...|...
T Consensus 183 ~~~~~ll~~l~~----~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~~- 256 (343)
T 2pjd_A 183 VGSQLLLSTLTP----HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVFS- 256 (343)
T ss_dssp HHHHHHHHHSCT----TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTT-
T ss_pred HHHHHHHHhcCc----CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEccccc-
Confidence 344555566641 23468999999999999888653 7999999998886665433 3345544444444433
Q ss_pred CCCCCCeeEEEeccccccc----cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINW----TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw----~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+++||+|+|+..+++- ..+...++.++.|+|||||.+++...
T Consensus 257 -~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 257 -EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp -TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 347899999998775431 13346899999999999999999864
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=123.72 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC----cEEEec
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAF 327 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~----~~~~~~ 327 (572)
+...+.+.+.+.. ....+|||+|||+|.++..++.. +|+++|+++.++..+..... ..++. ..+...
T Consensus 208 d~~~~~ll~~l~~----~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~-~ngl~~~~~v~~~~~ 282 (375)
T 4dcm_A 208 DIGARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMIN 282 (375)
T ss_dssp CHHHHHHHHTCCC----SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGGGEEEEEC
T ss_pred cHHHHHHHHhCcc----cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH-HcCCCcCceEEEEec
Confidence 3444455666652 34489999999999999888764 79999999998866654433 33332 233444
Q ss_pred cccCCCCCCCCeeEEEeccccccc--cCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 328 ATRRLPYPSQAFDLIHCSRCRINW--TRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 328 d~e~LPfp~~sFDlI~ss~~l~hw--~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|... ++++++||+|+|+..+++. ..+. ..++.++.++|||||.+++...
T Consensus 283 D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 283 NALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp STTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 5444 5667899999998775432 1121 3689999999999999999864
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=118.04 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
+..+|||||||+|.++..++++ +++++|+ +.++..+.... .+.++ ...+...|.. .+++. +||+|+|..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRF-LDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH-HHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhh-hhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 4579999999999999888764 6899999 87776555433 33343 2344455554 45554 8999999999
Q ss_pred cccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++|.++ ...+|++++++|||||++++.+.
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 8888433 26899999999999999999874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=111.87 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=76.9
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...+.+.+.+. ..+..+|||||||+|.++..+++. +|+++|+++.++..+..... ..+ ...+...|......
T Consensus 57 ~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~-~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 57 NLGIFMLDELD----LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS-YYN-NIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT-TCS-SEEEEESCGGGCCG
T ss_pred HHHHHHHHhcC----CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHh-hcC-CeEEEECCcccccc
Confidence 44555666554 245679999999999999888775 89999999988755543222 222 33444455554222
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++||+|++..++.|+. .++.++|||||.+++...
T Consensus 131 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred cCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEc
Confidence 467899999998766652 478999999999999974
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.5e-10 Score=117.25 Aligned_cols=111 Identities=16% Similarity=0.260 Sum_probs=82.7
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~L 332 (572)
.+.+.+.+. ..+..+|||||||+|.++..++++ +++++|+ +.++..+..... +.+.. ..+...|....
T Consensus 179 ~~~l~~~~~----~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 179 IQLLLEEAK----LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp HHHHHHHCC----CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTS
T ss_pred HHHHHHhcC----CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccC
Confidence 344555554 245689999999999999888764 7899999 888866654433 33432 44555677767
Q ss_pred CCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++. |+|++..++++|.++ ...+|+++.++|||||++++.+.
T Consensus 253 ~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 253 SYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 77643 999999998888432 47899999999999999988864
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=108.03 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-------------
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------------- 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------------- 333 (572)
.+..+|||||||+|.++..++++ .|+|+|+++... .....+...|...++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchhhhhhccccccccc
Confidence 35678999999999998888642 699999998321 112334445666655
Q ss_pred ------------CCCCCeeEEEeccccccccC----ChH-------HHHHHHHHhccCCeEEEEEEC
Q 008262 334 ------------YPSQAFDLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 ------------fp~~sFDlI~ss~~l~hw~~----d~~-------~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++++||+|+|..+ .|+.. +.. .++.++.++|||||.|++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 56689999999765 44421 211 378999999999999999764
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-10 Score=110.98 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d 328 (572)
..+..++.+.+.+. .+..+|||+|||+|.++..++. .+|+++|+++.++..++.+. ...+.. ..+...|
T Consensus 94 ~te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~v~~~~~d 167 (276)
T 2b3t_A 94 DTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA-QHLAIKNIHILQSD 167 (276)
T ss_dssp THHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH-HHHTCCSEEEECCS
T ss_pred hHHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEEcc
Confidence 45566666666654 2457899999999999888874 38999999999886665433 333443 3344444
Q ss_pred ccCCCCCCCCeeEEEecccccccc------------------------CChHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWT------------------------RDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~------------------------~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ++++++||+|+|+...+... .+...++.++.++|||||++++..
T Consensus 168 ~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 168 WFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp TTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 433 24467899999984322210 123578899999999999999984
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=124.79 Aligned_cols=121 Identities=10% Similarity=-0.018 Sum_probs=87.3
Q ss_pred cccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHH------HHHcC
Q 008262 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQF------ALERG 319 (572)
Q Consensus 250 ~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~------A~~rg 319 (572)
.|.......+..+.+.+. ..+..+|||||||+|.++..++.. .|+|+|+++.++..+.... +...+
T Consensus 153 vYGEt~~~~i~~il~~l~----l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G 228 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIK----MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 228 (438)
T ss_dssp GGGGTHHHHHHHHHHHHC----CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445566666766665 356789999999999988877642 4999999998776554322 22334
Q ss_pred C---CcEEEeccccCCCCCC--CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 320 A---PAMVAAFATRRLPYPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 320 ~---~~~~~~~d~e~LPfp~--~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+ ...+...|+..+++.+ ..||+|+++.. .++ ++....|.+++|+|||||.|+++.
T Consensus 229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-~F~-pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNF-AFG-PEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCT-TCC-HHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CCCCCeEEEECcccCCccccccCCccEEEEccc-ccC-chHHHHHHHHHHcCCCCcEEEEee
Confidence 3 3445566777777754 47999998755 344 677889999999999999999874
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=116.69 Aligned_cols=109 Identities=12% Similarity=0.008 Sum_probs=80.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--C---eEEEeCCccchHHHHHHHHHHcCCC-cEEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--N---VITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~---V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e 330 (572)
...+.+.+.+. ..++.+|||||||+|.++..+++. . |+++|+++.++..+.. .+...+.. ..+...|..
T Consensus 62 ~~~~~l~~~l~----~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~g~~~v~~~~~d~~ 136 (317)
T 1dl5_A 62 SLMALFMEWVG----LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVERLGIENVIFVCGDGY 136 (317)
T ss_dssp HHHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGG
T ss_pred HHHHHHHHhcC----CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCeEEEECChh
Confidence 44556666654 246689999999999999888764 4 9999999988866553 33344544 344455666
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+..+++||+|++..++.|.. .++.++|||||.++++..
T Consensus 137 ~~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 137 YGVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred hccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 6554568899999998866653 578999999999999863
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=116.50 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..+++. +++++|++ .++..+..... ..+.. ..+...|....+++++ ||+|+|..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYGND-YDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCCCC-CcEEEEcc
Confidence 35689999999999999888754 79999999 78866654433 23332 3455556666676654 99999999
Q ss_pred ccccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++|..+ ...+|+++.++|||||++++.+.
T Consensus 241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 98888322 26999999999999999999875
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-11 Score=121.44 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||+|||+|.++..++.. +|+|+|+++.++..++.. +...++ ...+...|...++ ++++||+|+++..++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN-AEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 4689999999999999999876 899999999988666543 344454 3445556666665 568999999987755
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+. .+....+.++.++|+|||++++.
T Consensus 156 ~~-~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GP-DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SG-GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred Cc-chhhhHHHHHHhhcCCcceeHHH
Confidence 54 55566788999999999997654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=116.61 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e 330 (572)
..|.+.+.+.+.. .+..+|||||||+|.++..+++. +|+|+|+++ ++..+. +.+...+.. ..+...+.+
T Consensus 24 ~~y~~ai~~~~~~----~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~ 97 (328)
T 1g6q_1 24 LSYRNAIIQNKDL----FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLE 97 (328)
T ss_dssp HHHHHHHHHHHHH----HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhhHhh----cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEECchh
Confidence 3455555444432 24579999999999999888765 799999994 765544 344445543 345566788
Q ss_pred CCCCCCCCeeEEEecccccc--ccCChHHHHHHHHHhccCCeEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRIN--WTRDDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~h--w~~d~~~~L~ei~RvLKPGG~lv~ 374 (572)
.+++++++||+|+|..+..+ .......++.++.|+|||||.++.
T Consensus 98 ~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88888889999998754232 224557899999999999999974
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=111.78 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~---LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..|++. +|+++|+++.++... .+.++.+ ....+...|... +++.+++||+|++
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~-~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDL-INLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHH-HHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH-HHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 45679999999999998888653 799999999776443 3455544 233444555554 4556789999998
Q ss_pred ccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
... ..+. ..++.++.++|||||+++++..
T Consensus 154 ~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 154 DVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 643 1233 4568889999999999999753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=117.56 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..+++. +++++|+ +.++..+..... ..++. ..+...|... +++. .||+|++..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 45689999999999999888754 7999999 888766554333 33432 3444455433 3443 499999999
Q ss_pred ccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++| .+. ..+|+++.++|||||++++.+.
T Consensus 257 vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 257 VLLNW-SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCC-CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 98888 444 4899999999999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=112.24 Aligned_cols=99 Identities=9% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
+..+|||||||+|.++..++.. .|+++|+++.|+.-+.. .+...|....+...|.... .+.++||+|++..+++
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~-~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS-IIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH-HHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 4689999999999999998443 89999999999866553 3445566532222333222 4568899999988866
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEE
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
+. ++....+.++.+.|||||+|+-.
T Consensus 127 lL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 127 VL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred hh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 66 77777888999999999999654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-10 Score=109.16 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=80.4
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP 333 (572)
..+.+.+. ..+..+|||+|||+|.++..+++. +|+++|+++.++..++.......+.. ..+...|...++
T Consensus 86 ~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 86 SAMVTLLD----LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp HHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred HHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence 34444443 246689999999999988877653 79999999988866655444331332 345555777777
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++++||+|++. + .++..++.++.++|||||.+++..+
T Consensus 162 ~~~~~~D~v~~~-----~-~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 162 LEEAAYDGVALD-----L-MEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcCEEEEC-----C-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 888899999973 2 5667899999999999999999974
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.3e-10 Score=114.12 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=75.0
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+|||||||+|.++..++++ +++++|+ +.++..+........ .....+...|... +++ ++||+|++..++++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 89999999999999888754 6999999 888866654433221 1123445555544 555 68999999999888
Q ss_pred ccCChH--HHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDG--ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~--~~L~ei~RvLKPGG~lv~st~ 377 (572)
| .+.. .+|++++++|||||++++.+.
T Consensus 246 ~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 246 L-DEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp C-CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred C-CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8 4444 999999999999999999974
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=111.35 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----LPfp~~sFDlI~s 344 (572)
.+..+|||+|||+|.++..|++. .|+++|+++.++..+.. .+... ....+...|... +++. ++||+|++
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~ 149 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER-ENIIPILGDANKPQEYANIV-EKVDVIYE 149 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-HhhcC-CCeEEEECCCCCcccccccC-ccEEEEEE
Confidence 45679999999999998887653 69999999988755442 22222 233344456666 6766 78999993
Q ss_pred ccccccccCCh---HHHHHHHHHhccCCeEEEEE
Q 008262 345 SRCRINWTRDD---GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 345 s~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~s 375 (572)
. . .++ ..++.++.++|||||+++++
T Consensus 150 ~-----~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 D-----V-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp C-----C-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred e-----c-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 2 2 344 67799999999999999996
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-10 Score=105.65 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=75.2
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~ 331 (572)
....+.+.+. ..+..+|||||||+|.++..+++ .+|+++|+++.++..+..... ..+.. ..+...+...
T Consensus 65 ~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~ 139 (215)
T 2yxe_A 65 MVGMMCELLD----LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR-KLGYDNVIVIVGDGTL 139 (215)
T ss_dssp HHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEESCGGG
T ss_pred HHHHHHHhhC----CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCccc
Confidence 3445555554 24567999999999998887765 379999999988866654333 33433 3334444422
Q ss_pred CCCC-CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYP-SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp-~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++ +++||+|++..++.++. .++.++|||||.+++...
T Consensus 140 -~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 140 -GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp -CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred -CCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEEC
Confidence 333 57899999998766652 488999999999999974
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-10 Score=110.81 Aligned_cols=109 Identities=18% Similarity=0.107 Sum_probs=81.1
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcC--C-CcEEEecccc
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERG--A-PAMVAAFATR 330 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg--~-~~~~~~~d~e 330 (572)
+..+.+.+. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+........+ . ...+...|..
T Consensus 88 ~~~i~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 88 AAQIVHEGD----IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp HHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHHHHHcC----CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 344444444 245679999999999998887752 799999999888666654444312 2 3345556777
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+++++++||+|++.. .++..++.++.++|||||++++.++
T Consensus 164 ~~~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 164 DSELPDGSVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GCCCCTTCEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred hcCCCCCceeEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 7788788999999742 4566899999999999999999974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-10 Score=110.18 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC---cEEE
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP---AMVA 325 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~ 325 (572)
....++..+..... ..+..+|||||||+|..+..|++. +|+++|+++.++..++..+ ...+.. ..+.
T Consensus 40 ~~~~~l~~l~~~~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 40 MTGQLLTTLAATTN----GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF-REAGYSPSRVRFL 114 (221)
T ss_dssp HHHHHHHHHHHHSC----CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH-HHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhhC----CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcCcEEEE
Confidence 34455555554443 223459999999999988887652 7999999999886665433 344544 3344
Q ss_pred eccccC-CC-CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 326 AFATRR-LP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 326 ~~d~e~-LP-fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..|... ++ +++++||+|++... ..+...++.++.++|||||++++..
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQVS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECCC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EcCHHHHHHHhcCCCcCeEEEcCc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 444332 33 34689999997643 2445789999999999999999864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-10 Score=108.79 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=77.8
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL 332 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~L 332 (572)
..+...+. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+..... ..+.. ..+...|...
T Consensus 83 ~~i~~~~~----~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~- 156 (255)
T 3mb5_A 83 ALIVAYAG----ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAGFDDRVTIKLKDIYE- 156 (255)
T ss_dssp HHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HHTCTTTEEEECSCGGG-
T ss_pred HHHHHhhC----CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH-HcCCCCceEEEECchhh-
Confidence 34444444 246789999999999998887654 79999999988866654433 34443 3444555553
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++++||+|++.. .++..++.++.++|||||.+++..+
T Consensus 157 ~~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 157 GIEEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCCCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccCCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 36778999999742 4667899999999999999999863
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-10 Score=112.82 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=76.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHc--CCC-------
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALER--GAP------- 321 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~r--g~~------- 321 (572)
..++.+.+.+. .....+|||+|||+|.++..++.. +|+|+|+++.++..++....... ++.
T Consensus 38 ~l~~~~l~~~~----~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~ 113 (250)
T 1o9g_A 38 EIFQRALARLP----GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 113 (250)
T ss_dssp HHHHHHHHTSS----CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc----cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhh
Confidence 45555554443 234578999999999988877643 79999999998866653322110 110
Q ss_pred --------------------cE-------------EEeccccCCCC-----CCCCeeEEEeccccccccC--------Ch
Q 008262 322 --------------------AM-------------VAAFATRRLPY-----PSQAFDLIHCSRCRINWTR--------DD 355 (572)
Q Consensus 322 --------------------~~-------------~~~~d~e~LPf-----p~~sFDlI~ss~~l~hw~~--------d~ 355 (572)
.. +...|...... ..++||+|+|+...++... ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~ 193 (250)
T 1o9g_A 114 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 193 (250)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred hhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHH
Confidence 11 44445443211 3458999999866544321 12
Q ss_pred HHHHHHHHHhccCCeEEEEEE
Q 008262 356 GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 356 ~~~L~ei~RvLKPGG~lv~st 376 (572)
..++.++.++|||||+++++.
T Consensus 194 ~~~l~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 194 AGLLRSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEeC
Confidence 489999999999999999965
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=115.92 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-CCCCCeeEEEeccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRC 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP-fp~~sFDlI~ss~~ 347 (572)
..+|||||||+|.++..++++ +++++|+ +.++..+... ....+.. ..+...|....+ +.++.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKT-IHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHH-HHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHH-HHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 789999999999999888764 7899999 7677555433 3333432 344455655554 23467999999999
Q ss_pred cccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++| .+. ..+|++++++|||||++++.+.
T Consensus 258 lh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 258 LHYF-DAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp GGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccC-CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8888 443 6999999999999999999864
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.7e-10 Score=117.42 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
....+|||||||+|.++..++++ +++++|+ +.++ +.+++. ....+...|... +++++ |+|++..++
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vl 271 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-----QDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWIC 271 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-----Hhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechh
Confidence 35689999999999999988764 6889998 6544 222222 233455556554 66654 999999998
Q ss_pred ccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++|..+. ..+|++++++|||||++++.+.
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8884332 4899999999999999999874
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=123.60 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=70.8
Q ss_pred CCCEEEEECCC------CchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC------C
Q 008262 274 HIRVVMDAGCG------VASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP------S 336 (572)
Q Consensus 274 ~~~~VLDIGCG------tG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp------~ 336 (572)
+..+||||||| +|..+..++. .+|+|+|+++.|. .......+...|+..+++. +
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence 46899999999 6655544443 3899999999873 1223345666788888877 7
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++||+|+|.. .+++ .+...+|.+++|+|||||+|++.+
T Consensus 287 ~sFDlVisdg-sH~~-~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 287 GPFDIVIDDG-SHIN-AHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp CCEEEEEECS-CCCH-HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccEEEECC-cccc-hhHHHHHHHHHHhcCCCeEEEEEe
Confidence 8999999874 3444 677899999999999999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-10 Score=115.17 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCEEEEECCCCch----hHHHhcc--------CCeEEEeCCccchHHHHHHHH---H---------H----------cC-
Q 008262 275 IRVVMDAGCGVAS----FGAYLLP--------RNVITMSIAPKDVHENQIQFA---L---------E----------RG- 319 (572)
Q Consensus 275 ~~~VLDIGCGtG~----~a~~L~~--------~~V~gvDiSp~dl~~a~~~~A---~---------~----------rg- 319 (572)
..+|||+|||||. ++..|++ .+|+|+|+|+.++..++...- . . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999996 5544443 279999999999976654210 0 0 00
Q ss_pred --------CCcEEEeccccCCCCC-CCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEE
Q 008262 320 --------APAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 320 --------~~~~~~~~d~e~LPfp-~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~s 375 (572)
....+...|....|++ .+.||+|+|.++++++ ++. ..++.+++++|||||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 0123444455555565 5789999999887777 444 58999999999999999886
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-10 Score=107.16 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCC-----CCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP-----SQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LPfp-----~~sFD 340 (572)
+..+|||||||+|.++..|++. +|+++|+++.++..++.... ..+.. ..+...|... ++.. .++||
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH-HcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 4579999999999999988763 79999999998866654333 33443 3344444422 3322 27899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|++.....++ .+...++.++ ++|||||++++...
T Consensus 137 ~V~~d~~~~~~-~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 137 MVFLDHWKDRY-LPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEEECSCGGGH-HHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEEcCCcccc-hHHHHHHHhc-cccCCCeEEEEeCC
Confidence 99987654444 3434677777 99999999999864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-10 Score=112.32 Aligned_cols=97 Identities=10% Similarity=0.143 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc-CCC-cEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAP-AMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r-g~~-~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+..+|||+|||+|.++..+++. +|+++|+++.++..+.... ... +.. ..+...|... ++++++||+|++.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-SEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD 186 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH-HTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HhcCCCCcEEEEECchhc-cCcCCCccEEEEc
Confidence 46689999999999988887643 7999999998886555433 233 433 3444455554 5667899999973
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. +++..+|.++.++|||||++++++.
T Consensus 187 -----~-~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 187 -----I-PDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp -----C-SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred -----C-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 5667899999999999999999974
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5e-10 Score=109.87 Aligned_cols=98 Identities=7% Similarity=0.093 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-CCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-YPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LP-fp~~sFDlI~ss 345 (572)
+..+|||||||+|.++..|+.. +|+++|+++.++..++.. +...++. ..+...|... ++ ..+++||+|++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN-LATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4579999999999999988873 799999999988666543 3344542 3444455533 44 446899999975
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ..+...++.++.++|||||+|++..
T Consensus 150 ~~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 150 AA----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred Cc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 32 3556789999999999999998864
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-10 Score=109.43 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc-------CCC-cEEEeccccC-CC--CCCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-------GAP-AMVAAFATRR-LP--YPSQA 338 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r-------g~~-~~~~~~d~e~-LP--fp~~s 338 (572)
+..+|||||||+|.++..++.. +|+|+|+++.++..+.......+ +.. ..+...|+.. ++ +++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 4578999999999999888764 69999999998866654433321 433 3344455554 66 77889
Q ss_pred eeEEEeccccccccCC--------hHHHHHHHHHhccCCeEEEEEE
Q 008262 339 FDLIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d--------~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|.|+.... ..|... ...++.++.++|||||.|++.+
T Consensus 129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 999985432 122110 0489999999999999999986
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.1e-10 Score=116.14 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
....+|||||||+|.++..++++ +++++|+ +.++ +.+++. ....+...|... |++.+ |+|++..++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vl 269 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-----SEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWIL 269 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-----Hhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHh
Confidence 35689999999999999988764 6889998 5444 222222 234455556665 77754 999999998
Q ss_pred ccccCC-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRD-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++|..+ ...+|++++++|||||+|++.+.
T Consensus 270 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 270 HDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp GGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 888433 25899999999999999999864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.8e-10 Score=103.64 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=64.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc-------------CCeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC-----
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-------------RNVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP----- 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-------------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LP----- 333 (572)
.+..+|||||||+|.++..|++ .+|+++|+++... .....+. ..|....+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 4568999999999999888764 3599999998421 0112233 33433322
Q ss_pred ---CCCCCeeEEEecccc---ccccCCh-------HHHHHHHHHhccCCeEEEEEEC
Q 008262 334 ---YPSQAFDLIHCSRCR---INWTRDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 ---fp~~sFDlI~ss~~l---~hw~~d~-------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++++||+|+|..+. .++..+. ..++.++.++|||||.|++..+
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 345689999986432 2232333 3789999999999999999974
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=107.86 Aligned_cols=154 Identities=13% Similarity=0.123 Sum_probs=90.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEe-ccc-----cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA-FAT-----RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~-~d~-----e~LPfp~~sFDlI~ 343 (572)
....+|||||||+|.++..|++. +|+|+|+|+.|+.. ++.+........ .+. +.++ ...||.+.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~-----a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~ 108 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW-----KIRSDERVVVMEQFNFRNAVLADFE--QGRPSFTS 108 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH-----HHHTCTTEEEECSCCGGGCCGGGCC--SCCCSEEE
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHH-----HHHhCccccccccceEEEeCHhHcC--cCCCCEEE
Confidence 35679999999999999888865 79999999999854 333222111110 011 2222 11244444
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHhhhhhhchhhhhccCc---EEEeeccchh
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY---IAIWKKPTNN 420 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~~~~~l~w~~v~~~g~---i~iw~kpl~~ 420 (572)
+..++.++ ..+|.++.|+|||||+|++...| .. ...+.. +.+.+. .........+
T Consensus 109 ~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~~p----~~--e~~~~~------------~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 109 IDVSFISL----DLILPPLYEILEKNGEVAALIKP----QF--EAGREQ------------VGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp ECCSSSCG----GGTHHHHHHHSCTTCEEEEEECH----HH--HSCHHH------------HC-CCCCCCHHHHHHHHHH
T ss_pred EEEEhhhH----HHHHHHHHHhccCCCEEEEEECc----cc--ccCHHH------------hCcCCeecCcchhHHHHHH
Confidence 43333332 77999999999999999997421 11 111111 111110 0001112334
Q ss_pred HHHHHHhcCCCCCccCCCCCCccccCCCHHHHHhhcc
Q 008262 421 SCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLP 457 (572)
Q Consensus 421 ~c~ll~~aGF~~p~cd~~~~~~~~wY~~l~~~L~~L~ 457 (572)
....++++||....++ ..+++.+|.+++.++.--+
T Consensus 167 l~~~l~~aGf~v~~~~--~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 167 VLKTATQLGFSVKGLT--FSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHHHHHHTEEEEEEE--ECSSCBTTTBCCEEEEEEE
T ss_pred HHHHHHHCCCEEEEEE--EccCCCCCCCHHHHHHHhh
Confidence 5667889999876655 6677778888777665433
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=110.13 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCC-------CcEEE--eccccCCCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGA-------PAMVA--AFATRRLPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~-------~~~~~--~~d~e~LPfp~~sFDlI 342 (572)
.+..+|||||||+|.++..++++ .|+|+|+++ |+.. +.+... ...+. ..|+..++ +++||+|
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 144 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVG-----GHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVI 144 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCS-----SCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhh-----hhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEE
Confidence 45689999999999999998876 899999998 5311 111111 23444 55666665 6899999
Q ss_pred EeccccccccCCh----H---HHHHHHHHhccCCe--EEEEEEC
Q 008262 343 HCSRCRINWTRDD----G---ILLLEVNRMLRAGG--YFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~---~~L~ei~RvLKPGG--~lv~st~ 377 (572)
+|..+ +...+. . .+|.++.|+||||| .|++..+
T Consensus 145 ~sd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 145 MCDVG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EEeCc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 99754 332222 1 37899999999999 9999875
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=110.55 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCC-------CcEEE--eccccCCCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGA-------PAMVA--AFATRRLPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~-------~~~~~--~~d~e~LPfp~~sFDlI 342 (572)
.+..+|||||||+|.++..++++ .|+|+|+++ |+.. +.++.. ...+. ..|+..++ +++||+|
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 152 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTS-----GHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTV 152 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCT-----TSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhh-----hhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence 45689999999999999999886 899999998 5411 111111 23444 55677766 6899999
Q ss_pred EeccccccccCCh----H---HHHHHHHHhccCCe--EEEEEEC
Q 008262 343 HCSRCRINWTRDD----G---ILLLEVNRMLRAGG--YFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~---~~L~ei~RvLKPGG--~lv~st~ 377 (572)
+|..+ ++..+. . .+|.++.|+||||| .|++..+
T Consensus 153 vsd~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 153 LCDIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp EECCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred EECCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 99754 332221 1 37899999999999 9999875
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=103.97 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=71.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcC-----C-CcEEEeccccCCCCCCCCeeE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERG-----A-PAMVAAFATRRLPYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg-----~-~~~~~~~d~e~LPfp~~sFDl 341 (572)
.+..+|||||||+|.++..|++. +|+++|+++.++..++..... .+ . ...+...|....+..+++||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-hcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 45689999999999988877642 799999999888666544332 22 1 233444555555555678999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|++.....+. +.++.++|||||.++++..
T Consensus 155 i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVV-------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSC-------CHHHHHTEEEEEEEEEEES
T ss_pred EEECCchHHH-------HHHHHHhcCCCcEEEEEEe
Confidence 9988765443 4688999999999999974
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=113.62 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..+++. .++++|+ +.++..+.... ...+.. ..+...|... +++. .||+|++..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL-KDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH-HHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHH-HhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence 45689999999999999888754 6888999 87776655433 333432 3444455433 3443 499999999
Q ss_pred ccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++| .+. ..+|+++.++|||||++++.+.
T Consensus 258 vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 258 VLLNW-PDHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp CGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCC-CHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 98888 444 4899999999999999999875
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=107.16 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=74.8
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP 333 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP 333 (572)
....+.+.+. ..+..+|||||||+|.++..+++ .+|+++|+++.++..+..... ..+... .+...|. ..+
T Consensus 79 ~~~~~~~~l~----~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~-~~~ 152 (235)
T 1jg1_A 79 MVAIMLEIAN----LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLE-RAGVKNVHVILGDG-SKG 152 (235)
T ss_dssp HHHHHHHHHT----CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCG-GGC
T ss_pred HHHHHHHhcC----CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEECCc-ccC
Confidence 3445555554 24567899999999999988876 489999999988766554333 344433 3334443 445
Q ss_pred CCCC-CeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQ-AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~-sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++ .||+|++..++.++. .++.++|||||.++++..
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEe
Confidence 5544 499999987755552 378999999999999974
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=108.99 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=73.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH--cCCC--cEEEeccccCC-------CCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE--RGAP--AMVAAFATRRL-------PYPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~--rg~~--~~~~~~d~e~L-------Pfp~~ 337 (572)
.+..+|||+|||+|.++..|+.+ +|+++|+++.++..+....... .++. ..+...|...+ +++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 35679999999999998888754 7999999998875554332210 2332 34455566655 35678
Q ss_pred CeeEEEeccccccc-----------------cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 338 AFDLIHCSRCRINW-----------------TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 338 sFDlI~ss~~l~hw-----------------~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+||+|+|+...... ......++.++.++|||||+|++...
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999997432211 12356889999999999999999863
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-09 Score=110.09 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccCC-C-CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRRL-P-YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-r---g~~~~~~~~d~e~L-P-fp~~sFDlI 342 (572)
....+|||||||+|.++..|++. +|+++|+++.++..++..+... . .....+...|.... + +++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 35689999999999999999865 7999999999886665443321 1 12334444454332 2 346799999
Q ss_pred Eecccccccc--CC--hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHH
Q 008262 343 HCSRCRINWT--RD--DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 394 (572)
Q Consensus 343 ~ss~~l~hw~--~d--~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e 394 (572)
++... .++. .+ ...++.++.|+|||||.|++.....+.........+..+.
T Consensus 199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~ 253 (334)
T 1xj5_A 199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCR 253 (334)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHH
T ss_pred EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHH
Confidence 98643 2222 11 2689999999999999999974323444444444444443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=104.41 Aligned_cols=109 Identities=14% Similarity=0.211 Sum_probs=75.0
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc----------CCeEEEeCCccchHHHHHHHHHHc-----CCCcE
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----------RNVITMSIAPKDVHENQIQFALER-----GAPAM 323 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~----------~~V~gvDiSp~dl~~a~~~~A~~r-----g~~~~ 323 (572)
...+.+.+... ..+..+|||||||+|.++..|++ .+|+++|+++.++..+........ .....
T Consensus 71 ~~~~~~~l~~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 148 (227)
T 1r18_A 71 HAFALEYLRDH--LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 148 (227)
T ss_dssp HHHHHHHTTTT--CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhh--CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceE
Confidence 34444554311 24567999999999998887765 279999999988876654443321 11233
Q ss_pred EEeccccCCCCCC-CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 324 VAAFATRRLPYPS-QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 324 ~~~~d~e~LPfp~-~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+...|... ++++ ++||+|++...+.+. +.++.++|||||.+++...
T Consensus 149 ~~~~d~~~-~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 149 IVEGDGRK-GYPPNAPYNAIHVGAAAPDT-------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEESCGGG-CCGGGCSEEEEEECSCBSSC-------CHHHHHTEEEEEEEEEEES
T ss_pred EEECCccc-CCCcCCCccEEEECCchHHH-------HHHHHHHhcCCCEEEEEEe
Confidence 44445444 4444 789999998775554 3789999999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-10 Score=114.14 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHc------C-----CCcEEEeccccCC--CC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER------G-----APAMVAAFATRRL--PY 334 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~r------g-----~~~~~~~~d~e~L--Pf 334 (572)
.++.+|||+|||+|.++..|+. .+|+++|+++.++..+........ + ....+...|...+ ++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 4568999999999998888765 369999999988876665444311 1 1234445566555 56
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++||+|++.. .++..++.++.++|||||.|++...
T Consensus 184 ~~~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 184 KSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ----EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 677899999853 2334589999999999999998863
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=107.16 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCC--CCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP--SQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LPfp--~~sFDlI~ 343 (572)
+..+|||||||+|..+..|++. +|+++|+++.++..++... ...+.. ..+...|... ++.. .++||+|+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENL-QLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4589999999999999888764 7999999998886665433 334443 3444445433 4432 34899999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+... ..+...++.++.++|||||++++..
T Consensus 142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 142 IDAD----KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ECCc----hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 8542 3445789999999999999999885
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.6e-10 Score=116.72 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||||||+|.++..++++ .++++|+ +.++. .+++. ....+...|... +++. ||+|++..++
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-----~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~l 277 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-----NAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVC 277 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-----TCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHH-----hhhhc-CCCEEEeCCccc-CCCC--CCEEEEeccc
Confidence 35689999999999999988765 5777898 65552 22221 123444556655 6654 9999999998
Q ss_pred ccccCChH--HHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDG--ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~--~~L~ei~RvLKPGG~lv~st 376 (572)
+|| .+.. .+|++++|+|||||++++.+
T Consensus 278 h~~-~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 278 HNW-SDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 888 5555 99999999999999999985
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.9e-10 Score=118.39 Aligned_cols=114 Identities=11% Similarity=0.007 Sum_probs=77.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHH--HH----HHHHHcC--CCc-E
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHEN--QI----QFALERG--APA-M 323 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a--~~----~~A~~rg--~~~-~ 323 (572)
..+..+.+.+. ..+..+|||||||+|.++..++.. .|+|+|+++.++..+ +. +.+...+ ... .
T Consensus 229 ~~v~~ml~~l~----l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~ 304 (433)
T 1u2z_A 229 NFLSDVYQQCQ----LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304 (433)
T ss_dssp HHHHHHHHHTT----CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHHhcC----CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence 34455555554 246789999999999999888763 599999999887655 22 2223345 223 2
Q ss_pred EEeccccCC--CC--CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 324 VAAFATRRL--PY--PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 324 ~~~~d~e~L--Pf--p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+...+.... ++ ..++||+|+++..+ +..+...+|.++.|+|||||.+++..
T Consensus 305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 305 FSLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 333222211 22 24789999987554 33666789999999999999999874
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=106.35 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=75.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
.....+...+..+ ...++.+|||+|||+|.++..+++. .|+++|+++.|+.. .++.++++. ...+...|+..
T Consensus 60 kla~~ll~~l~~~-~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r~-nv~~i~~Da~~ 136 (232)
T 3id6_C 60 KLAGAILKGLKTN-PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRRP-NIFPLLADARF 136 (232)
T ss_dssp HHHHHHHTTCSCC-SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHCT-TEEEEECCTTC
T ss_pred HHHHHHHhhhhhc-CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhcC-CeEEEEccccc
Confidence 3455565555432 2356789999999999999887753 79999999988644 234455442 33344445443
Q ss_pred CC---CCCCCeeEEEeccccccccCChHHH-HHHHHHhccCCeEEEEEE
Q 008262 332 LP---YPSQAFDLIHCSRCRINWTRDDGIL-LLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LP---fp~~sFDlI~ss~~l~hw~~d~~~~-L~ei~RvLKPGG~lv~st 376 (572)
.. ...++||+|++... . .+.... +..+.++|||||+|+++.
T Consensus 137 ~~~~~~~~~~~D~I~~d~a-~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 137 PQSYKSVVENVDVLYVDIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp GGGTTTTCCCEEEEEECCC-C---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhccccceEEEEecCC-C---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 21 12468999998743 2 344444 456667999999999985
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-09 Score=109.23 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=71.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH---H-cCCCcEEEeccccCCCC--CCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL---E-RGAPAMVAAFATRRLPY--PSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~---~-rg~~~~~~~~d~e~LPf--p~~sFDlI 342 (572)
.++.+|||||||+|.++..+++. +|+++|+++.++..++..+.. . ......+...|...++. ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 35689999999999999998865 799999999888655543321 1 11223444455544432 46899999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++... .++.... ..+++++.|+|||||.|++...
T Consensus 174 i~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 174 IIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 98754 3332222 5889999999999999999863
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=104.55 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=71.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC---------CeEEEeCCccchHHHHHHHHHHcC-----C-CcEEEeccccCCC----
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---------NVITMSIAPKDVHENQIQFALERG-----A-PAMVAAFATRRLP---- 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---------~V~gvDiSp~dl~~a~~~~A~~rg-----~-~~~~~~~d~e~LP---- 333 (572)
.+..+|||||||+|.++..+++. +|+++|+++.++..+...... .+ . ...+...|.....
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKR-DKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH-HCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH-cCccccccCCEEEEECChHhcccccC
Confidence 35689999999999988877642 799999999888666544443 23 2 2344445555544
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...++||+|++.....+. +.++.++|||||.+++...
T Consensus 158 ~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 456789999998765443 5788999999999999863
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-10 Score=106.74 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCC---CCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPY---PSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPf---p~~sFDlI~ss~~l 348 (572)
+++.+|||||||. | ++|+|+.|+. .|+++.. ...+...|++.+++ ++++||+|+|+.++
T Consensus 11 ~~g~~vL~~~~g~-----------v-~vD~s~~ml~-----~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------S-PVEALKGLVD-----KLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT-----------S-CHHHHHHHHH-----HHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc-----------e-eeeCCHHHHH-----HHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 5678999999996 2 2677776664 4443321 24455567788877 78999999998775
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+..+...+|++++|+|||||+|++..
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 5543788999999999999999999974
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-10 Score=116.84 Aligned_cols=97 Identities=20% Similarity=0.116 Sum_probs=69.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|||||||+|.++..++++ +++++|++. ++. .+.+...+. ...+...|.. .+++ +||+|++..
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~---~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA---RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT---TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh---cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence 45689999999999999888764 688888843 221 000111111 2344455553 3444 899999999
Q ss_pred ccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++| ++. ..+|++++|+|||||+|++.+.
T Consensus 256 vlh~~-~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 256 ILHNW-GDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp CGGGS-CHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred hccCC-CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 98888 555 5999999999999999999874
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-09 Score=101.26 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=66.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC-----------CCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP-----------SQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp-----------~~sF 339 (572)
.+..+|||+|||+|.++..++++ .|+|+|+++... .....+...|+...+.. .++|
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 46789999999999999999876 799999998521 11233445565554421 1489
Q ss_pred eEEEecccc---ccccCC-------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCR---INWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l---~hw~~d-------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+|.... .++..+ ...++.++.++|||||.|++..+
T Consensus 93 D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 93 DDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 999986421 111111 13678899999999999999865
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=102.57 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCCCCCeeEEEec
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYPSQAFDLIHCS 345 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LPfp~~sFDlI~ss 345 (572)
+..+|||||||+|..+..|+.. +|+++|+++.++..+..... ..+.. ..+...|... ++..++ ||+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 3578999999999999888754 79999999988866654433 33332 2344444433 354456 9999986
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. ..+...++.++.++|||||++++..
T Consensus 134 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 32 3566899999999999999999875
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-09 Score=107.98 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.+..+|||+|||+|.++..++.. +|+++|+++.++..++. .+...++. ..+...|...++. .++||+|++...
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p 195 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV 195 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence 35689999999999999888764 79999999998866654 34444543 3455556666644 578999998755
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. +...++.++.++|||||.+++++.
T Consensus 196 ~-----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 196 H-----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred c-----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 2 557899999999999999999975
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-10 Score=109.44 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=68.8
Q ss_pred CCEEEEECCCCchhHHHhcc--------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCC-CCeeEE
Q 008262 275 IRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPS-QAFDLI 342 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~--------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~---LPfp~-~sFDlI 342 (572)
..+|||||||+|..+..|++ .+|+++|+++.++..++ .......+...|... +++.. .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 47999999999998887754 37999999999874332 222234455556655 35433 479999
Q ss_pred EeccccccccCChHHHHHHHHH-hccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNR-MLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~R-vLKPGG~lv~st 376 (572)
++... | .+...+|.++.| +|||||+|++..
T Consensus 157 ~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 157 FIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEESS--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 98643 3 366889999998 999999999975
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-09 Score=107.12 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeC-CccchHHHHHHHH----HHcCC-----
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSI-APKDVHENQIQFA----LERGA----- 320 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDi-Sp~dl~~a~~~~A----~~rg~----- 320 (572)
+.....+.+.+... ..+..+|||||||+|.++..++.. +|+++|+ ++.++..++.+.. ...+.
T Consensus 63 ~~~~l~~~l~~~~~----~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~ 138 (281)
T 3bzb_A 63 GARALADTLCWQPE----LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR 138 (281)
T ss_dssp HHHHHHHHHHHCGG----GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHhcch----hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 34445555555443 134579999999999998887764 7999999 8888866654431 22222
Q ss_pred -CcEEEeccc----cCCC--CCCCCeeEEEeccccccccCChHHHHHHHHHhcc---C--CeEEEEEE
Q 008262 321 -PAMVAAFAT----RRLP--YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLR---A--GGYFAWAA 376 (572)
Q Consensus 321 -~~~~~~~d~----e~LP--fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLK---P--GG~lv~st 376 (572)
...+...+. ..+. +++++||+|+++.++++. .+...++.++.++|| | ||.+++..
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~-~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH-QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG-GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccCh-HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 122222221 1111 035789999998886654 777899999999999 9 99887764
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=118.79 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=80.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~ 331 (572)
.+.+.+.+.+. ..+..+|||||||+|.++..+++. +|+++|+++ ++..++ +.+...++. ..+...+.+.
T Consensus 145 ~~~~~il~~l~----~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 145 TYQRAILQNHT----DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHTGG----GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhh----hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhh
Confidence 44555555554 235679999999999999888765 799999998 774443 444445542 3455567777
Q ss_pred CCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~s 375 (572)
++++ ++||+|+|..+..++..+ ....+.++.++|||||++++.
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7765 689999998766666433 356788999999999999864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=105.05 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCCC-C----CCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLPY-P----SQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~-e~LPf-p----~~sFD 340 (572)
+..+|||||||+|.++..|+.. +|+++|+++.++..++... ...+.. ..+...+. +.++. . .++||
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYW-EKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3578999999999999888764 7999999998886665433 334443 33444444 22221 1 17899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++.. +..+...++.++.++|||||++++..
T Consensus 143 ~v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 143 LIYIDA----DKANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 999653 23455789999999999999999985
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-09 Score=109.20 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=83.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e 330 (572)
..+..+..+.. ..+..+|||+|||+|.++..++. ..|+|+|+++.++..++.+ +...++. ..+...|..
T Consensus 190 ~la~~l~~~~~----~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n-~~~~g~~~i~~~~~D~~ 264 (354)
T 3tma_A 190 VLAQALLRLAD----ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREA-ALASGLSWIRFLRADAR 264 (354)
T ss_dssp HHHHHHHHHTT----CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHH-HHHTTCTTCEEEECCGG
T ss_pred HHHHHHHHHhC----CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHH-HHHcCCCceEEEeCChh
Confidence 34444544443 24567899999999998877765 4899999999998766543 4445543 456666788
Q ss_pred CCCCCCCCeeEEEeccccccccCC-------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d-------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++.+.+.||+|+|+........+ ...++.++.++|||||.+++.+.
T Consensus 265 ~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 265 HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 888777889999997543221111 25789999999999999999974
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-09 Score=103.85 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=73.1
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL- 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L- 332 (572)
...+...+..+ ...+..+|||+|||+|.++..|++ ..|+++|+++.++..+. +.+... ....+...|....
T Consensus 59 ~~~i~~~l~~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~ 135 (227)
T 1g8a_A 59 GAAIMNGLKNF-PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPE 135 (227)
T ss_dssp HHHHHTTCCCC-CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGG
T ss_pred HHHHHhhHHhc-CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcc
Confidence 34454334322 124567999999999999888874 37999999998775443 233322 2334444555442
Q ss_pred --CCCCCCeeEEEeccccccccCChH-HHHHHHHHhccCCeEEEEEE
Q 008262 333 --PYPSQAFDLIHCSRCRINWTRDDG-ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 333 --Pfp~~sFDlI~ss~~l~hw~~d~~-~~L~ei~RvLKPGG~lv~st 376 (572)
....++||+|++... ..+.. .++.++.++|||||++++..
T Consensus 136 ~~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 136 EYRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GGTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 112368999997643 23333 55999999999999999974
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=110.23 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=67.0
Q ss_pred CCCEEEEECCCCc--hhHHHhc-----cCCeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCC----CC--CCCe
Q 008262 274 HIRVVMDAGCGVA--SFGAYLL-----PRNVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP----YP--SQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCGtG--~~a~~L~-----~~~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LP----fp--~~sF 339 (572)
..++|||||||++ ..+..++ +.+|+++|.|+.|+..++..... ... ...+...|+.+++ .+ .++|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~-~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS-TPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC-CSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc-CCCCcEEEEEecccChhhhhccccccccc
Confidence 4588999999973 2223322 23899999999999665433321 111 2345555665542 11 3456
Q ss_pred e-----EEEeccccccccCCh---HHHHHHHHHhccCCeEEEEEEC
Q 008262 340 D-----LIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 D-----lI~ss~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st~ 377 (572)
| .|+++.+ +||..+. ..++.++.+.|+|||+|+++..
T Consensus 157 D~~~p~av~~~av-LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 157 DLTRPVALTVIAI-VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp CTTSCCEEEEESC-GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred CcCCcchHHhhhh-HhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 5 4666655 6666663 5899999999999999999975
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-09 Score=101.23 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+|||+|||+|.++..+++. +|+++|+++.++..+....+ ..++ ...+...|.....+++++||+|++..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV-- 166 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTCBSEEEECS--
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCcccEEEECC--
Confidence 45689999999999998888763 89999999988866554333 3343 23344445554433567899999742
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.++..++.++.++|||||.+++..+
T Consensus 167 ----~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 167 ----REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ----SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4667899999999999999999974
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=109.86 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC-CeEEEeC----CccchHHHHHHHHHHcCCC-cEEEec-cccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSI----APKDVHENQIQFALERGAP-AMVAAF-ATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDi----Sp~dl~~a~~~~A~~rg~~-~~~~~~-d~e~LPfp~~sFDlI~ss 345 (572)
.++.+|||||||+|.++..++++ .|+|+|+ ++.++... .....+.+ ..+... |...+ +.++||+|+|.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd 155 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI---PMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCD 155 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC---CCCSTTGGGEEEECSCCTTTS--CCCCCSEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHH---HhhhcCCCCeEEEeccccccC--CcCCCCEEEEC
Confidence 45689999999999999999886 7999999 44333100 00111112 233333 44444 45799999997
Q ss_pred cccc--cccCChH---HHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRI--NWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~--hw~~d~~---~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+.. ++..+.. .+|.++.++|||||.|++..+
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 5532 3322322 578999999999999999764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.8e-09 Score=105.80 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccC-CCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-r---g~~~~~~~~d~e~-LPfp~~sFDlI~s 344 (572)
...+|||||||+|.++..+++. +|+++|+++.++..++..+... . .....+...|... ++..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4589999999999999999865 6999999998886655443221 1 1223344444332 3444678999998
Q ss_pred ccccccccC-----ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHH
Q 008262 345 SRCRINWTR-----DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 394 (572)
Q Consensus 345 s~~l~hw~~-----d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e 394 (572)
... .+|.. ....+++++.++|||||.|++.+........++......+.
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~ 223 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRIS 223 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHH
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHH
Confidence 633 33211 12689999999999999999985322233444444444443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-10 Score=123.23 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcC-CCcEEEeccccCC--CCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRL--PYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~d~e~L--Pfp~~sFDlI~ss~~l 348 (572)
.+.+|||||||.|.++..|++. +|+|+|+++.++..++ ..|.+.+ ....+...+++++ .+.+++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 4579999999999999999987 8999999999886665 3455555 4455666667777 4677899999999998
Q ss_pred ccccCChH--HHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDG--ILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~--~~L~ei~RvLKPGG~lv~st 376 (572)
+|. .++. ..+..+.+.|+++|..++.+
T Consensus 145 ehv-~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 145 HHI-VHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHH-HHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hcC-CCHHHHHHHHHHHHHhccccceeeEE
Confidence 888 4543 44556777788888766664
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=113.45 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
...+|||||||+|.++..++++ +++++|+ +.++. .+++.. ...+...|... +++. ||+|++..+++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~~-~v~~~~~d~~~-~~p~--~D~v~~~~~lh 257 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-----NLSGSN-NLTYVGGDMFT-SIPN--ADAVLLKYILH 257 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-----TCCCBT-TEEEEECCTTT-CCCC--CSEEEEESCGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHh-----hcccCC-CcEEEeccccC-CCCC--ccEEEeehhhc
Confidence 4579999999999999988754 6999999 76653 232221 23344455544 5553 99999999988
Q ss_pred cccCChH--HHHHHHHHhccC---CeEEEEEEC
Q 008262 350 NWTRDDG--ILLLEVNRMLRA---GGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~--~~L~ei~RvLKP---GG~lv~st~ 377 (572)
|| .+.. .+|++++|+||| ||++++.+.
T Consensus 258 ~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 258 NW-TDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp GS-CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred cC-CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 88 5555 999999999999 999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-09 Score=101.72 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-CC---CCCeeE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-YP---SQAFDL 341 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LP-fp---~~sFDl 341 (572)
+..+|||||||+|.++..|++. +|+++|+++.++..++... ...+.. ..+...|... ++ +. .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNI-ERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4579999999999999888765 7999999998886665433 334443 3344444422 22 11 267999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|++... ......++.++.++|||||++++..
T Consensus 137 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 137 IFIDAD----KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEECSC----GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEEcCC----cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 997644 2344789999999999999998875
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=104.77 Aligned_cols=98 Identities=9% Similarity=0.096 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCC--CCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP--SQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LPfp--~~sFDlI~s 344 (572)
+..+|||||||+|.++..|++. +|+++|+++.++..+..... ..+.. ..+...|... ++.. +++||+|++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK-ALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH-HTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 4579999999999988887753 79999999988866554333 33442 3344445444 2432 578999998
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... .+...++.++.++|||||.+++.+
T Consensus 133 ~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 6542 466899999999999999999985
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-09 Score=105.06 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-cC---CCcEEEeccccC-CCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RG---APAMVAAFATRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-rg---~~~~~~~~d~e~-LPfp~~sFDlI~s 344 (572)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+... .+ ....+...|... ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 5689999999999999998865 6999999998886655433221 11 123344444432 3444678999998
Q ss_pred ccccccccCC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHh
Q 008262 345 SRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395 (572)
Q Consensus 345 s~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~ 395 (572)
... .++... ...+++++.++|||||.+++.........+.+......+..
T Consensus 155 d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~ 208 (275)
T 1iy9_A 155 DST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKE 208 (275)
T ss_dssp SCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHT
T ss_pred CCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHH
Confidence 643 343221 25899999999999999999853222334444444444433
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=108.05 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..|++. .|+++|+++.++..+..+. ...+.. ..+...|...++..+++||+|++..
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~-~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNL-SRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-HHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45689999999999988888742 6999999998886655433 334553 3455556666654567899999742
Q ss_pred c---cccccCCh------------------HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 C---RINWTRDD------------------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~---l~hw~~d~------------------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ...+..++ ..+|.++.++|||||++++++.
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 1 01111111 4889999999999999999874
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=105.55 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccC-CCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-r---g~~~~~~~~d~e~-LPfp~~sFDlI~ 343 (572)
....+|||||||+|.++..+++. +|+++|+++.++..++..+... . .....+...|... ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999875 6999999998886665443321 1 2223344444433 444568999999
Q ss_pred eccccccccCC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
+... .++... ...+++++.++|||||.+++..
T Consensus 174 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 8643 443221 2478999999999999999986
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-10 Score=109.10 Aligned_cols=101 Identities=11% Similarity=0.164 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC---CCC---CCCeeE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL---PYP---SQAFDL 341 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~L---Pfp---~~sFDl 341 (572)
+..+|||+|||+|.++..++.+ +|+|+|+++.++..++... ...++. ..+...|.+.. +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV-EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 4679999999999988777643 7999999999987666443 334443 34455555441 344 268999
Q ss_pred EEeccccccccC--------------ChHHHHHHHHHhccCCeEEEEE
Q 008262 342 IHCSRCRINWTR--------------DDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 342 I~ss~~l~hw~~--------------d~~~~L~ei~RvLKPGG~lv~s 375 (572)
|+|+...++... ....++.+++|+|||||.+.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 999865443320 1124678899999999998765
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-09 Score=108.78 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~ 329 (572)
+....+.+.+.+.. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+..+... .++. ..+...|+
T Consensus 137 q~~~~~~l~~~~~~---~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~-~gl~~~~v~~i~~D~ 212 (332)
T 2igt_A 137 QIVHWEWLKNAVET---ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDA 212 (332)
T ss_dssp GHHHHHHHHHHHHH---SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCH
T ss_pred HHHHHHHHHHHHHh---cCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECcH
Confidence 33334444444431 134579999999999999988865 799999999988766644433 3443 34444554
Q ss_pred cCCCC----CCCCeeEEEecccc---------ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLPY----PSQAFDLIHCSRCR---------INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LPf----p~~sFDlI~ss~~l---------~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+.. ..++||+|++.... .++..+...++.++.++|||||+|++..
T Consensus 213 ~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 213 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 44321 14689999985432 1233345689999999999999988875
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-09 Score=107.97 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=67.6
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH----cCCCcEEEeccccC-CCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFATRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~----rg~~~~~~~~d~e~-LPfp~~sFDlI~s 344 (572)
...+|||||||+|.++..+++. +|+++|+++.++..++..+... ......+...|... ++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4589999999999999999865 7999999998875554332210 01123344444432 3335678999998
Q ss_pred ccccccccCCh----HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st 376 (572)
... .++.... ..+++++.++|||||.+++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 643 4443222 588999999999999999985
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-09 Score=107.85 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCC-----CCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP-----SQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LPfp-----~~sFD 340 (572)
+..+|||||||+|..+..|++. +|+++|+++.++..++.. +...+.. ..+...|... ++.. +++||
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPY-WREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHH-HHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3579999999999998888763 799999999988655543 3334443 3444445433 3321 47899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++... ..+...++.++.++|||||++++..
T Consensus 139 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 139 FIFIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9997643 3455789999999999999999975
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-09 Score=109.86 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=69.5
Q ss_pred CEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEeccccc
Q 008262 276 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L--Pfp~~sFDlI~ss~~l~ 349 (572)
.+|||||||+|.++..+++. +|+++|+++.++..++..+.........+...|...+ .+++++||+|++... .
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~-~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF-A 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-T
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-C
Confidence 49999999999999998872 7999999998774443322111112233444454332 245689999998643 3
Q ss_pred cccCC----hHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d----~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++... ...++++++|+|||||.|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 33211 25899999999999999999863
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.3e-09 Score=104.04 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
.+..+|||+|||+|.++..++.. +|+++|+++.++..+.... ...++ ...+...|.... +++++||+|++.
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~ 188 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL-TKWGLIERVTIKVRDISEG-FDEKDVDALFLD 188 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHH-HHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHc-ccCCccCEEEEC
Confidence 45679999999999988877643 7999999998886655433 33343 233444455554 666789999974
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. +++..++.++.++|||||.+++.+.
T Consensus 189 ~------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 189 V------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp C------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred C------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 4567899999999999999999874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-09 Score=108.48 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccC-CCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-r---g~~~~~~~~d~e~-LPfp~~sFDlI~s 344 (572)
+..+|||||||+|.++..+++. +|+++|+++.++..++..+... . .....+...|... ++..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4589999999999999998865 6999999998875554332210 0 1123344444332 3333578999998
Q ss_pred ccccccccCC--h--HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 008262 345 SRCRINWTRD--D--GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 345 s~~l~hw~~d--~--~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~ 393 (572)
... .++... . ..+++++.++|||||.+++.........+.+......+
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 247 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYA 247 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence 643 333211 1 68999999999999999998632333444444444343
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.6e-09 Score=104.73 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH----cCCCcEEEeccccC-CCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFATRR-LPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~----rg~~~~~~~~d~e~-LPfp~~sFDlI~ 343 (572)
.++.+|||||||+|.++..+++. +|+++|+++.++..++..+... ......+...|... ++..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 35689999999999999999865 7999999998775444322110 01223344444433 232367899999
Q ss_pred eccccccccCCh----HHHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+... .++.... ..+++++.++|||||.+++...
T Consensus 157 ~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 8643 3432221 5899999999999999999853
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-09 Score=107.08 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=74.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-cC----CCcEEEeccccC-CCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RG----APAMVAAFATRR-LPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-rg----~~~~~~~~d~e~-LPfp~~sFDlI 342 (572)
....+|||||||+|.++..+++. +|+++|+++.++..++..+... .+ ....+...|... ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35689999999999999999875 6999999998886665443321 11 223444445433 34446899999
Q ss_pred Eeccccccc---cC--C--hHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINW---TR--D--DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw---~~--d--~~~~L~ei~RvLKPGG~lv~st 376 (572)
++... .++ .. . ...+++++.++|||||.|++..
T Consensus 156 i~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 98754 454 11 1 2689999999999999999975
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-09 Score=101.39 Aligned_cols=98 Identities=9% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC------------
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP------------ 333 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LP------------ 333 (572)
+..+|||||||+|.++..++.. +|+++|+++.++..++... ...+.. ..+...|... ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYW-KENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4578999999999988887643 7999999998876655433 333443 2333333322 22
Q ss_pred --CCC--CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 334 --YPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 --fp~--~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|++ ++||+|++... ..+...++.++.++|||||++++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999998643 2344689999999999999999985
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=108.28 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccc-
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC- 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~- 347 (572)
++++|||||||+|.++...++. +|+++|.++ ++..+ .+.++..+.. ..+...+++.+.++ +.||+|+|..+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQA-REVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHH-HHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHH-HHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 4578999999999988776654 799999986 65444 3556666654 34555677888776 68999998432
Q ss_pred -cccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 348 -RINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 348 -l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.+........++....|.|||||.++-+
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 2223234578888999999999998754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-09 Score=103.34 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCC------CCCCe
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPY------PSQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LPf------p~~sF 339 (572)
+..+|||||||+|..+..|+. .+|+++|+++.++..++..+ ...+.. ..+...+... ++. ++++|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI-KKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 357999999999998887764 37999999998886665433 334442 2344444432 332 25789
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|++... ..+...++.++.++|||||++++..
T Consensus 158 D~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998633 3456899999999999999999874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=93.62 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=64.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+..+|||+|||+|.++..++.. .|+|+|+++.++..+. ++-....+...|...++ ++||+|+++..++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~-----~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 121 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK-----RNCGGVNFMVADVSEIS---GKYDTWIMNPPFG 121 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHH-----HHCTTSEEEECCGGGCC---CCEEEEEECCCC-
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-----HhcCCCEEEECcHHHCC---CCeeEEEECCCch
Confidence 35679999999999999888765 5999999998774443 22113445555666664 7899999998866
Q ss_pred cccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 350 NWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 350 hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
++... ...++.++.++| |+ +++..
T Consensus 122 ~~~~~~~~~~l~~~~~~~--g~-~~~~~ 146 (200)
T 1ne2_A 122 SVVKHSDRAFIDKAFETS--MW-IYSIG 146 (200)
T ss_dssp ------CHHHHHHHHHHE--EE-EEEEE
T ss_pred hccCchhHHHHHHHHHhc--Cc-EEEEE
Confidence 66432 247899999999 55 44443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=99.78 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc----cCCCCCC--CCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT----RRLPYPS--QAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~----e~LPfp~--~sFD 340 (572)
+..+|||||||+|..+..|+.. +|+++|+++.++..++..+. ..+.. ..+...+. ..++..+ ++||
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ-KAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3478999999999999888764 69999999988866554333 33442 23333342 2233334 7899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++... ..+...++.++.++|||||++++..
T Consensus 151 ~V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 151 LIFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9997643 2455789999999999999999975
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.8e-09 Score=103.53 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC----CCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY----PSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPf----p~~sFDlI 342 (572)
.++.+|||+|||+|..+..+++ ..|+++|+++.++..+.. .+...+.. ..+...|...++. ..++||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS-NINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH-HHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 4567999999999999888775 379999999988865543 33444553 3444456555543 25789999
Q ss_pred Eecccccc-----------------ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSRCRIN-----------------WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~h-----------------w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++...... .......+|.++.++|||||.+++++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 98632111 113446899999999999999999974
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=105.84 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
....+|||||||+|.++..++++ +++..|+ |..+..+....+ ..+. ...+...|....|.+ .+|+|++..+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~-~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v 253 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFS-FQEEEQIDFQEGDFFKDPLP--EADLYILARV 253 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSC-C--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhh-hcccCceeeecCccccCCCC--CceEEEeeee
Confidence 34579999999999999999876 5666776 434433321111 1122 234445565544544 4799999999
Q ss_pred cccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 348 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 348 l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++|.++. ..+|++++++|+|||.+++.+.
T Consensus 254 lh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 254 LHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 99994332 4789999999999999999874
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.5e-09 Score=104.25 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHH-----------cCCCcEEEeccccC-CCCCCCC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-----------RGAPAMVAAFATRR-LPYPSQA 338 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~-----------rg~~~~~~~~d~e~-LPfp~~s 338 (572)
.+.+|||||||+|.++..+++. +|+++|+++.++..++..+ .. ......+...|... ++. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4689999999999999998865 7999999998886555433 10 11122344444322 222 578
Q ss_pred eeEEEeccccccccCC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 008262 339 FDLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~ 393 (572)
||+|++... .++... ...+++++.++|||||.+++...........++.....+
T Consensus 153 fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l 210 (281)
T 1mjf_A 153 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEM 210 (281)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHH
T ss_pred eeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence 999998644 343221 257899999999999999997532223334334433333
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=99.75 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH---H-cCCCcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL---E-RGAPAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~---~-rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
.+++|||||||+|.++..++.. +|+++|+++.++..+...+.. . ......+...|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 4589999999999999888764 799999999877444321110 0 1122334444544433 7899999862
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.++..+++++.++|||||.+++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 455669999999999999999974
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-08 Score=105.22 Aligned_cols=114 Identities=13% Similarity=-0.006 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CCCCCCeeEEEecccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-Pfp~~sFDlI~ss~~l~h 350 (572)
++.+|||+|||+|.++..++.. .|+++|+|+.++..+..+. ...++...+...|+..+ +...+.||+|++....+.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~-~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~ 292 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAA-LRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLV 292 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-HHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCC
Confidence 4689999999999999988765 6999999999987666443 34455544445554432 222344999998754322
Q ss_pred c--------cCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 351 W--------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 351 w--------~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
. ..+...++.++.++|||||+|++.+........++.+
T Consensus 293 ~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~ 338 (393)
T 4dmg_A 293 KRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLE 338 (393)
T ss_dssp SSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 1 1233478999999999999999776433444444333
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=97.82 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCC-C-CC----CCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL-P-YP----SQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~L-P-fp----~~sFD 340 (572)
+..+|||||||+|.++..++.. +|+++|+++.++..+.... ...+. ...+...|.... + +. .++||
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLW-RQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHH-HHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4579999999999999888763 7999999998886665433 33444 233444443221 1 11 16899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|++... ..+...++.++.++|||||.+++..
T Consensus 148 ~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998643 2445789999999999999999974
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=101.03 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d 328 (572)
..+..++.+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+|+.++..+..+ +...++. ..+...|
T Consensus 107 ~te~lv~~~l~~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n-~~~~~l~~~v~~~~~D 181 (284)
T 1nv8_A 107 ETEELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFVRKGE 181 (284)
T ss_dssp THHHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEEEESS
T ss_pred hHHHHHHHHHHHhcc----cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECc
Confidence 455666666665541 23468999999999988887653 799999999988666543 3444553 3444445
Q ss_pred ccCCCCCCCCe---eEEEecccccccc------------------CChHHHHHHHH-HhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAF---DLIHCSRCRINWT------------------RDDGILLLEVN-RMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sF---DlI~ss~~l~hw~------------------~d~~~~L~ei~-RvLKPGG~lv~st 376 (572)
... +++ ++| |+|+|+...+... .+...+++++. +.|+|||+|++..
T Consensus 182 ~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 182 FLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp TTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred chh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 443 222 578 9999973222110 11227899999 9999999999974
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.7e-09 Score=108.37 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
...+|||||||+|.++..++++ +++++|+ +.++. .+++. ....+...|... +++ .||+|+++.+++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVG-----NLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLH 262 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHS-----SCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHh-----hcccC-CCcEEEeCccCC-CCC--CceEEEEccccc
Confidence 4579999999999999988765 6888898 55442 22221 123344455555 665 499999999988
Q ss_pred cccCChH--HHHHHHHHhccC---CeEEEEEEC
Q 008262 350 NWTRDDG--ILLLEVNRMLRA---GGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~--~~L~ei~RvLKP---GG~lv~st~ 377 (572)
+| .+.. .+|++++++||| ||++++.+.
T Consensus 263 ~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 263 DW-NDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp GS-CHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CC-CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 88 5655 999999999999 999999864
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-08 Score=102.76 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=59.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP 333 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ +|+|+|+++.++..+..... ..+.. ..+...|...++
T Consensus 29 ~i~~~i~~~~~----~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~-~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 29 GILDKIIYAAK----IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCL-YEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHC----CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHH-HTTCCCEEC----CCSSC
T ss_pred HHHHHHHHhcC----CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECchhhCC
Confidence 34556666554 245689999999999999999986 79999999998866654333 33433 334445666666
Q ss_pred CCCCCeeEEEecccccccc
Q 008262 334 YPSQAFDLIHCSRCRINWT 352 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~ 352 (572)
+ .+||+|+++.. .+|.
T Consensus 104 ~--~~~D~Vv~n~p-y~~~ 119 (299)
T 2h1r_A 104 F--PKFDVCTANIP-YKIS 119 (299)
T ss_dssp C--CCCSEEEEECC-GGGH
T ss_pred c--ccCCEEEEcCC-cccc
Confidence 5 48999998754 5553
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-08 Score=104.54 Aligned_cols=111 Identities=9% Similarity=0.021 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCC---CCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPY---PSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~-LPf---p~~sFDlI~ 343 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..+..+ +...++. ..+...|+.. ++. ..++||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N-~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAH-FEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHH-HHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 3578999999999999988874 799999999998766643 4445543 3455555433 321 245899999
Q ss_pred eccccc----cccCC----hHHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 008262 344 CSRCRI----NWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (572)
Q Consensus 344 ss~~l~----hw~~d----~~~~L~ei~RvLKPGG~lv~st~P~~~tl~E 385 (572)
+..... ....+ ...++.++.++|+|||++++++.+......+
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~ 340 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQ 340 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHH
Confidence 864432 12222 2357788899999999999998544333333
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.6e-08 Score=101.85 Aligned_cols=106 Identities=12% Similarity=-0.006 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccC-CCC-CCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRR-LPY-PSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~-LPf-p~~sFDlI~ss~ 346 (572)
++.+|||+| |+|.++..++.. +|+++|+++.++..++.+ +...++ ...+...|... +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~-~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKA-ANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 468999999 999998887643 799999999988666543 334455 34455567666 764 457899999986
Q ss_pred ccccccCChHHHHHHHHHhccCCe-EEEEEECCCCCCH
Q 008262 347 CRINWTRDDGILLLEVNRMLRAGG-YFAWAAQPVYKHE 383 (572)
Q Consensus 347 ~l~hw~~d~~~~L~ei~RvLKPGG-~lv~st~P~~~tl 383 (572)
..... . ...++.++.++||||| .++++......+.
T Consensus 250 p~~~~-~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~ 285 (373)
T 2qm3_A 250 PETLE-A-IRAFVGRGIATLKGPRCAGYFGITRRESSL 285 (373)
T ss_dssp CSSHH-H-HHHHHHHHHHTBCSTTCEEEEEECTTTCCH
T ss_pred CCchH-H-HHHHHHHHHHHcccCCeEEEEEEecCcCCH
Confidence 53333 2 4789999999999999 4567753212444
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=101.77 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=74.1
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR 331 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~ 331 (572)
...++.+.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+.... ...+. ...+...|...
T Consensus 14 ~~i~~~i~~~~~----~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAA----LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTC----CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHhcC----CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcceec
Confidence 345666776665 245689999999999999999875 8999999998885554332 22222 23455567776
Q ss_pred CCCCCCCeeEEEeccccccccCChH-HHH--------------HHH--HHhccCCeEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDG-ILL--------------LEV--NRMLRAGGYFA 373 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~-~~L--------------~ei--~RvLKPGG~lv 373 (572)
++++ +||+|+++.. .+|..+.. .+| +|+ +++|||||.++
T Consensus 89 ~~~~--~fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 89 TDLP--FFDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SCCC--CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ccch--hhcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 6665 7999998744 55543322 222 233 37999999873
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=105.96 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LP--fp~~sFDlI~s 344 (572)
.++.+|||+|||+|..+..+++ ..|+++|+++.++..+.. .+...+.. ..+...|...++ +++++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~-~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKD-FVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 4567999999999998888775 369999999988755543 33344553 344455666665 55578999996
Q ss_pred c----c-ccccccCCh----------------HHHHHHHHHhccCCeEEEEEEC
Q 008262 345 S----R-CRINWTRDD----------------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s----~-~l~hw~~d~----------------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. . ..++-.++. ..+|.++.++|||||.+++++.
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 1 112211221 4689999999999999999974
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-08 Score=98.76 Aligned_cols=98 Identities=7% Similarity=0.028 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-C-----CCCCe
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-Y-----PSQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~-LP-f-----p~~sF 339 (572)
+.++|||||||+|..+..+++ .+|+++|+++.++..++..+ ...+.. ..+...|... ++ + ++++|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFI-RKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 357999999999998887764 37999999998886655433 334543 2333334322 22 1 25789
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|++.. +..+...++.++.++|||||++++..
T Consensus 149 D~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999753 33455789999999999999999875
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.6e-08 Score=95.36 Aligned_cols=117 Identities=16% Similarity=0.087 Sum_probs=79.9
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~L 332 (572)
++.+.++++ ++.+|||||||+|.++..++.. .|+++|+++.++..+..+. ...++. ..+...|....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~-~~~gl~~~I~~~~gD~l~~ 84 (230)
T 3lec_A 12 LQKVANYVP------KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNV-SEHGLTSKIDVRLANGLSA 84 (230)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHH-HHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhhc
Confidence 455555654 4578999999999999998875 6999999999887666444 445553 33444444443
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
..+.+.||+|+..++.- .-...+|.+..+.|+++|+|+++.. ....++++
T Consensus 85 ~~~~~~~D~IviaGmGg---~lI~~IL~~~~~~l~~~~~lIlqp~---~~~~~lr~ 134 (230)
T 3lec_A 85 FEEADNIDTITICGMGG---RLIADILNNDIDKLQHVKTLVLQPN---NREDDLRK 134 (230)
T ss_dssp CCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEES---SCHHHHHH
T ss_pred cccccccCEEEEeCCch---HHHHHHHHHHHHHhCcCCEEEEECC---CChHHHHH
Confidence 33444799988654422 1135788899999999999999952 23444444
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=90.39 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
.+..+|||+|||+|.++..++.. .|+|+|+++.++..+... +...+....+...|...++ ++||+|+++...+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 35679999999999999988765 599999999887555432 2233444455556666664 4899999987755
Q ss_pred cccCC-hHHHHHHHHHhccCCeEEEEE
Q 008262 350 NWTRD-DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 350 hw~~d-~~~~L~ei~RvLKPGG~lv~s 375 (572)
.+... ...++.++.++| ||.+++.
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEE
Confidence 55322 257899999999 6655443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.68 E-value=7e-08 Score=102.41 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC-C--cEEEeccccCC-C-C--CCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-P--AMVAAFATRRL-P-Y--PSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~-~--~~~~~~d~e~L-P-f--p~~sFDlI~ 343 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..+..+ +...++ . ..+...|...+ + + ..++||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n-~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQN-VELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999999988865 799999999888666543 344555 2 34555554443 2 1 146899999
Q ss_pred eccccc--------cccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHH
Q 008262 344 CSRCRI--------NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 385 (572)
Q Consensus 344 ss~~l~--------hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~E 385 (572)
+..... ....+...++.++.++|+|||++++++.+......+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 348 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDL 348 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHH
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHH
Confidence 875321 111344688999999999999999998544444333
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-08 Score=105.13 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..+++. .|+++|+++.++..+..+ +...+....+...|...++ +++++||+|++..
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~-~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDN-LKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHH-HHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-HHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45689999999999988888753 799999999988665533 3344555555556666665 5567899999632
Q ss_pred ----c-cccccCCh----------------HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 ----C-RINWTRDD----------------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ----~-l~hw~~d~----------------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .++-.++. ..+|.++.++|||||++++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 11111221 3789999999999999999974
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=105.68 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC----CCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY----PSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPf----p~~sFDlI~ss~ 346 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..+..+ +...++. ..+...|+..+.. ..++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n-~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEEN-ARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHH-HHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3478999999999999888765 899999999888666543 3444554 3444445443321 257899999864
Q ss_pred cccccc--------CChHHHHHHHHHhccCCeEEEEEECCCCCC
Q 008262 347 CRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQPVYKH 382 (572)
Q Consensus 347 ~l~hw~--------~d~~~~L~ei~RvLKPGG~lv~st~P~~~t 382 (572)
...... .+...++.++.++|+|||.+++++.+....
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 331 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT 331 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC
Confidence 322211 233578999999999999999998544333
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.2e-08 Score=95.58 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=79.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~L 332 (572)
++.+.++++ ++.+|||||||+|.++..|+.. .|+++|+++.++..+..+ +...++.. .+...|....
T Consensus 12 L~~i~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N-~~~~gl~~~I~v~~gD~l~~ 84 (244)
T 3gnl_A 12 LEKVASYIT------KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQ-VRSSGLTEQIDVRKGNGLAV 84 (244)
T ss_dssp HHHHHTTCC------SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHH-HHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEEecchhhc
Confidence 455555655 4578999999999999998875 699999999988766544 44455532 3444444333
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
..+.+.||+|++.++.- .-...+|.+..+.|+++|+|+++.. ....++++
T Consensus 85 ~~~~~~~D~IviagmGg---~lI~~IL~~~~~~L~~~~~lIlq~~---~~~~~lr~ 134 (244)
T 3gnl_A 85 IEKKDAIDTIVIAGMGG---TLIRTILEEGAAKLAGVTKLILQPN---IAAWQLRE 134 (244)
T ss_dssp CCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEES---SCHHHHHH
T ss_pred cCccccccEEEEeCCch---HHHHHHHHHHHHHhCCCCEEEEEcC---CChHHHHH
Confidence 33334699988654321 1135788999999999999999952 34444444
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.5e-08 Score=102.59 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~ 347 (572)
+..+|||+|||+|.++..++.. +|+|+|+++.++..++.+ +...++ ...+...|...+++++++||+|+|+..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5678999999999998888764 799999999998766643 344555 345666788888888899999999754
Q ss_pred cccccC------Ch-HHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTR------DD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~------d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
...... +. ..++.++.|+| ||.+++.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 332211 11 57888999999 45544443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=97.82 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
++.+|||+|||+|.++.. +.. +|+++|+++.++..++.+ +...++ ...+...|...+. ++||+|++...
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n-~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-- 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKN-IKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP-- 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT--
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECChHHhc---CCCcEEEECCc--
Confidence 457999999999999988 655 799999999888666543 344454 2345555665554 78999998632
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....++.++.++|+|||++++.+.
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1124789999999999999998764
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-08 Score=104.51 Aligned_cols=110 Identities=12% Similarity=0.028 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-C---CCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-Y---PSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LP-f---p~~sFDlI~s 344 (572)
+..+|||+|||+|.++..++.. +|+++|+++.++..+..+ +...++. ..+...|...+. . ..++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n-~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKEN-AKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 4679999999999999988865 799999999988666543 3444553 344455544332 1 2578999998
Q ss_pred ccccccc--------cCChHHHHHHHHHhccCCeEEEEEECCCCCCHH
Q 008262 345 SRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE 384 (572)
Q Consensus 345 s~~l~hw--------~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~ 384 (572)
....... ..+...++.++.++|+|||.+++++........
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 343 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQ 343 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHH
Confidence 6432221 133457899999999999999998753333333
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-08 Score=111.10 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCCCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~-LPfp~~sFDlI~ss~ 346 (572)
++.+|||+|||+|.++..++.. +|+++|+|+.++..+..+.+ ..++. ..+...|+.. ++...++||+|++..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~-~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLR-LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 3579999999999999887754 59999999998876664443 34543 3455555443 444567999999865
Q ss_pred ccc----------cccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRI----------NWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~----------hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
... +...+...++.++.++|||||+|++++.
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 322 2223445789999999999999999974
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-08 Score=106.42 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-fp~~sFDlI~ss~ 346 (572)
.++.+|||+|||+|..+..|++. .|+++|+++.++..+.. .+...++...+...|...++ +.+++||+|++..
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~-n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE-NVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 45689999999999988887743 69999999988866554 33344555445555655554 3468999999522
Q ss_pred ----c-cc--------cccCC--------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 ----C-RI--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ----~-l~--------hw~~d--------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .+ +|..+ ...+|.++.++|||||+|++++-
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 1 01 12111 14689999999999999999974
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.6e-08 Score=105.06 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCC-CCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPY-PSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPf-p~~sFDlI~ss~ 346 (572)
++.+|||+|||+|..+..|++. .|+++|+++.++..+..+ +...++.. .+...|...++. .+++||+|++..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n-~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHAN-ISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH-HHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 5689999999999988877752 699999999888665543 33345543 344556666553 457899999731
Q ss_pred ----c-cc--------cccCC--------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 347 ----C-RI--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ----~-l~--------hw~~d--------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .+ +|..+ ...+|.++.++|||||+|++++.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 11 12110 13689999999999999999974
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=92.57 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=78.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccc-cC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RR 331 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~-e~ 331 (572)
++.+.++++ ++.+|||||||+|.++..++.. .|+++|+++..+..+.. .+...++.. .+...|. +.
T Consensus 6 L~~l~~~v~------~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~i~~~~~d~l~~ 78 (225)
T 3kr9_A 6 LELVASFVS------QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVK-NVEAHGLKEKIQVRLANGLAA 78 (225)
T ss_dssp HHHHHTTSC------TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHhCC------CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEECchhhh
Confidence 445555554 4578999999999999988875 69999999988866654 444456542 3333333 34
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
++. .+.||+|+...+.- .-...+|.++.+.|+++|+|+++. . .....+++
T Consensus 79 l~~-~~~~D~IviaG~Gg---~~i~~Il~~~~~~L~~~~~lVlq~--~-~~~~~vr~ 128 (225)
T 3kr9_A 79 FEE-TDQVSVITIAGMGG---RLIARILEEGLGKLANVERLILQP--N-NREDDLRI 128 (225)
T ss_dssp CCG-GGCCCEEEEEEECH---HHHHHHHHHTGGGCTTCCEEEEEE--S-SCHHHHHH
T ss_pred ccc-CcCCCEEEEcCCCh---HHHHHHHHHHHHHhCCCCEEEEEC--C-CCHHHHHH
Confidence 432 12699988654311 113678999999999999999985 3 34444443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-07 Score=99.32 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR 331 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~ 331 (572)
...+++.+.+.+. ..+..+|||+|||+|.++..|+.. +|+|+|+++.++..+.. .+...++. ..+...|...
T Consensus 271 ~e~l~~~~~~~l~----~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 271 NQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHhhc----CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHH
Confidence 3445555555554 235679999999999999999876 89999999998876654 34445553 3455555554
Q ss_pred ----CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 ----LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 ----LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++.+++||+|++....... ..++..+. .++|++.++++..
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g~----~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAGA----AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC----HHHHHHHH-HHCCSEEEEEESC
T ss_pred HhhhhhhhcCCCCEEEECCCCccH----HHHHHHHH-hcCCCeEEEEECC
Confidence 44567799999986542222 24454444 4799999999863
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=94.94 Aligned_cols=101 Identities=18% Similarity=0.049 Sum_probs=73.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC-CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
..+.+|||||||+|.++..+... .++++|+++.++.-+.. .+...+.+..+...|....+.+ ++||+|++.-++++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHh
Confidence 35789999999999999887744 89999999998855543 3444566555666666555554 599999988676666
Q ss_pred cCChHHHHHHHHHhccCCeEEEEE
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
.........++.+.|+++|.++-.
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEc
Confidence 333344555999999999887654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-07 Score=93.23 Aligned_cols=101 Identities=11% Similarity=-0.016 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
..+.+|||||||+|.++..+... .|+++|+++.++.-.. +.+...|+...+...|.. ...+.+.||+|++.-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~-~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLL-EDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTT-TSCCCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeec-ccCCCCCcchHHHHHHH
Confidence 34789999999999999888655 8999999999885554 344445666555554432 33456889999988776
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
++........+.++.+.|+|+|.++-.
T Consensus 209 ~~Le~q~kg~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 209 PCLETQQRGSGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred HHhhhhhhHHHHHHHHHhCCCCEEEec
Confidence 666333333444999999999999655
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-07 Score=94.37 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=83.6
Q ss_pred eeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc
Q 008262 242 FKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER 318 (572)
Q Consensus 242 ~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r 318 (572)
|.|.=..++|..+...-..++.+.+. ++.+|||+|||+|.++..++.. +|+++|+++..+..+. +.++..
T Consensus 99 ~~~D~~k~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~-~N~~~N 171 (278)
T 3k6r_A 99 YKLDVAKIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLN 171 (278)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHT
T ss_pred EEEeccceEEcCCcHHHHHHHHHhcC------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHH-HHHHHc
Confidence 33333345555555555556666654 5689999999999998777643 7999999998775544 344455
Q ss_pred CCCc--EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 319 GAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 319 g~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.. .+...|...++. .+.||.|++... .....+|..+.++||+||++.+.+
T Consensus 172 ~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 172 KVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp TCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEEeCcHHHhcc-ccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEEe
Confidence 5543 344556666553 578999997633 233568888999999999997764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=102.95 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-CCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP-fp~~sFDlI~ss 345 (572)
.++.+|||+|||+|..+..|++. .|+++|+++.++..+.. .+...++.+ .+...|...++ ..+++||+|++.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~-n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSE-NIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHH-HHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 45689999999999888777653 69999999988865553 334445554 34344555554 235799999974
Q ss_pred cc---cc----------cccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RC---RI----------NWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~---l~----------hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.- .. .|..+. ..+|.++.++|||||.|+++|-
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 31 11 121111 1679999999999999999974
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-07 Score=95.93 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHhcc---------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEe
Q 008262 274 HIRVVMDAGCGVASFGAYLLP---------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 344 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~s 344 (572)
...+|||+|||+|.++..+++ .+++|+|+++.++..+...... .+....+...|... +...+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~-~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh-CCCCceEEECCCCC-ccccCCccEEEE
Confidence 457899999999998876653 3689999999888666554433 34444455555433 234578999999
Q ss_pred ccccccccCC----------------h-HHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRD----------------D-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d----------------~-~~~L~ei~RvLKPGG~lv~st 376 (572)
+..+.++..+ . ..++.++.+.|||||++++..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9775444211 1 157999999999999999986
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5e-07 Score=97.13 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+..+|||+|||+|.++..|++. +|+|+|+++.++..++.+ +...++...+...|.+.+.. .+||+|++.......
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n-~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRN-VEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAGL 366 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTCS
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccch
Confidence 4579999999999999999876 799999999998766644 33445544455556666542 389999986442111
Q ss_pred cCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...++..+ +.|+|||.+++++.
T Consensus 367 ---~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 367 ---HPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp ---CHHHHHHH-HHHCCSEEEEEESC
T ss_pred ---HHHHHHHH-HhcCCCcEEEEECC
Confidence 13455555 46999999999963
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.5e-07 Score=96.75 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
...++.+.+.+.. .+..+|||+|||+|.++..+++ .+++|+|+++.++..+ ....+...|..
T Consensus 25 ~~l~~~~~~~~~~----~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~ 91 (421)
T 2ih2_A 25 PEVVDFMVSLAEA----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFL 91 (421)
T ss_dssp HHHHHHHHHHCCC----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGG
T ss_pred HHHHHHHHHhhcc----CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChh
Confidence 4556666666652 3456999999999999988875 2799999999876322 12334445555
Q ss_pred CCCCCCCCeeEEEeccccccccC---------Ch-------------------HHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTR---------DD-------------------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~---------d~-------------------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
... +.+.||+|+++........ +. ..++..+.++|+|||.+++..+
T Consensus 92 ~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 92 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 544 3478999999754322211 10 1568899999999999999864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=6e-07 Score=91.87 Aligned_cols=90 Identities=17% Similarity=0.065 Sum_probs=62.4
Q ss_pred CCCCEEEEECC------CCch-hHHHhcc--CCeEEEeCCccchHHHHHHHHHHcCCCcEE-EeccccCCCCCCCCeeEE
Q 008262 273 HHIRVVMDAGC------GVAS-FGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGC------GtG~-~a~~L~~--~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~-~~~d~e~LPfp~~sFDlI 342 (572)
.+..+|||+|| |+|. .+..+.. ..|+|+|+++. + .+ ..+ ...|+..++++ ++||+|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----------~~--v~~~i~gD~~~~~~~-~~fD~V 127 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----------SD--ADSTLIGDCATVHTA-NKWDLI 127 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----------CS--SSEEEESCGGGCCCS-SCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----------CC--CEEEEECccccCCcc-CcccEE
Confidence 46689999999 4465 2333333 37999999986 2 12 234 55677777765 789999
Q ss_pred Eecccccccc----CC-------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSRCRINWT----RD-------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~----~d-------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+.. .++. .+ ...+++++.|+|||||.|++..+
T Consensus 128 vsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 128 ISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp EECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 98642 2221 11 24789999999999999999864
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-07 Score=89.25 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 329 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~ 329 (572)
-+...+.++.+. .. ..+..+|||||||+|.|+..++++ .|.++|++.. +....+.. ...+........++
T Consensus 58 RaA~KL~ei~ek-~~---l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD-l~~~pi~~-~~~g~~ii~~~~~~ 131 (277)
T 3evf_A 58 RGTAKLRWFHER-GY---VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD-GHEKPMNV-QSLGWNIITFKDKT 131 (277)
T ss_dssp THHHHHHHHHHT-TS---SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT-TCCCCCCC-CBTTGGGEEEECSC
T ss_pred cHHHHHHHHHHh-CC---CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc-Cccccccc-CcCCCCeEEEeccc
Confidence 344445555555 22 245678999999999999987655 5778888732 21000000 00111223333344
Q ss_pred cCCCCCCCCeeEEEecccccc----ccCChH--HHHHHHHHhccCC-eEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRIN----WTRDDG--ILLLEVNRMLRAG-GYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~h----w~~d~~--~~L~ei~RvLKPG-G~lv~st~ 377 (572)
+...++.+.||+|+|..+ .+ +.+... .+|..+.++|||| |.|++..+
T Consensus 132 dv~~l~~~~~DlVlsD~a-pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 132 DIHRLEPVKCDTLLCDIG-ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CTTTSCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred eehhcCCCCccEEEecCc-cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 556677889999999753 33 422222 3578889999999 99999865
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.3e-07 Score=96.14 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCEEEEECCCCchhHHHhc-------------------cCCeEEEeCCccchHHHHHHHHHH----------c--CCCcE
Q 008262 275 IRVVMDAGCGVASFGAYLL-------------------PRNVITMSIAPKDVHENQIQFALE----------R--GAPAM 323 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~-------------------~~~V~gvDiSp~dl~~a~~~~A~~----------r--g~~~~ 323 (572)
.-+|+|+|||+|..+..+. +-+|...|+..+|...-....... . +....
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5789999999997776651 116778899988875443322210 0 00111
Q ss_pred EEec---cccCCCCCCCCeeEEEeccccccccCCh--------------------------------------HHHHHHH
Q 008262 324 VAAF---ATRRLPYPSQAFDLIHCSRCRINWTRDD--------------------------------------GILLLEV 362 (572)
Q Consensus 324 ~~~~---d~e~LPfp~~sFDlI~ss~~l~hw~~d~--------------------------------------~~~L~ei 362 (572)
+..+ ....-.||+++||+|+|+.+ +||..+. ..+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 12233478999999999866 8897632 3468888
Q ss_pred HHhccCCeEEEEEEC
Q 008262 363 NRMLRAGGYFAWAAQ 377 (572)
Q Consensus 363 ~RvLKPGG~lv~st~ 377 (572)
+|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999964
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=89.57 Aligned_cols=88 Identities=9% Similarity=0.002 Sum_probs=65.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++++.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++..+..... . .....+...|...+++
T Consensus 37 ~i~~~Iv~~l~----~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~-~-~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 37 NFVNKAVESAN----LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE-L-YNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH-H-CSSEEEEESCTTTSCG
T ss_pred HHHHHHHHhcC----CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc-c-CCCeEEEECchhhCCc
Confidence 45666766665 245689999999999999999875 89999999999876655443 2 2234456667888888
Q ss_pred CCCCeeEEEeccccccc
Q 008262 335 PSQAFDLIHCSRCRINW 351 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw 351 (572)
++.+||.|+++.. .++
T Consensus 111 ~~~~fD~Iv~NlP-y~i 126 (295)
T 3gru_A 111 NKLDFNKVVANLP-YQI 126 (295)
T ss_dssp GGSCCSEEEEECC-GGG
T ss_pred ccCCccEEEEeCc-ccc
Confidence 8888999998743 444
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-08 Score=98.91 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=71.6
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 336 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~ 336 (572)
++.+.+.+. ..+..+|||||||+|.++..|++. +|+|+|+++.++..+..... ......+...|...+++++
T Consensus 18 ~~~i~~~~~----~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 18 LNQIIKQLN----LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp HHHHHHHCC----CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCccc
Confidence 555666654 245678999999999999888765 89999999988743321111 1112344556778888764
Q ss_pred -CCeeEEEeccc-----------cccccCChHHHH----HHHHHhccCCeEEEEEE
Q 008262 337 -QAFDLIHCSRC-----------RINWTRDDGILL----LEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 337 -~sFDlI~ss~~-----------l~hw~~d~~~~L----~ei~RvLKPGG~lv~st 376 (572)
++| .|+++.. +.|+ .+...++ +.+.|+|+|||.+.+..
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~-~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFES-RASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHC-CCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCC-CCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 6776532 1121 2333444 66899999999876653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-07 Score=90.35 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
...++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++..+...... .....+...|...++
T Consensus 16 ~~~~~~i~~~~~----~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~ 89 (244)
T 1qam_A 16 KHNIDKIMTNIR----LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFK 89 (244)
T ss_dssp HHHHHHHHTTCC----CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCC
T ss_pred HHHHHHHHHhCC----CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCC
Confidence 455667776665 245689999999999999999875 899999999887544332211 123445566788888
Q ss_pred CCC-CCeeEEEecc
Q 008262 334 YPS-QAFDLIHCSR 346 (572)
Q Consensus 334 fp~-~sFDlI~ss~ 346 (572)
+++ ..| .|+++.
T Consensus 90 ~~~~~~~-~vv~nl 102 (244)
T 1qam_A 90 FPKNQSY-KIFGNI 102 (244)
T ss_dssp CCSSCCC-EEEEEC
T ss_pred cccCCCe-EEEEeC
Confidence 774 456 455553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=94.52 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=78.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----------------CCeEEEeCCccchHHHHHHHHHHcC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALERG 319 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvDiSp~dl~~a~~~~A~~rg 319 (572)
..++.|.+.+. .....+|||.|||+|.++..+.+ ..++|+|+++.++..+..+... ++
T Consensus 158 ~v~~~mv~~l~----~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l-~g 232 (445)
T 2okc_A 158 PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HG 232 (445)
T ss_dssp HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhC----CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH-hC
Confidence 45556666554 23457899999999988766543 3799999999887665544433 34
Q ss_pred C---CcEEEeccccCCCCCCCCeeEEEeccccccccC-C---------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 320 A---PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-D---------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 320 ~---~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~-d---------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
. ...+...|....+.. ..||+|+++..+.+... + ...++..+.++|||||++++..+
T Consensus 233 ~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 233 IGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 4 233444455444433 48999999876544211 1 12789999999999999998863
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=92.43 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=76.8
Q ss_pred CCEEEEECCCCchhHHHhccC---------------------CeEEEeCCccchHHHHHHH-------HHHcC--CCcEE
Q 008262 275 IRVVMDAGCGVASFGAYLLPR---------------------NVITMSIAPKDVHENQIQF-------ALERG--APAMV 324 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~---------------------~V~gvDiSp~dl~~a~~~~-------A~~rg--~~~~~ 324 (572)
.-+|+|+||++|..+..+... +|+..|+..+|...-.... ..+.+ ....+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 568999999999666544221 5667788877764332211 12222 22334
Q ss_pred Eecc---ccCCCCCCCCeeEEEeccccccccCChHHH---------------------------------------HHHH
Q 008262 325 AAFA---TRRLPYPSQAFDLIHCSRCRINWTRDDGIL---------------------------------------LLEV 362 (572)
Q Consensus 325 ~~~d---~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~---------------------------------------L~ei 362 (572)
..+. ...-.||+++||+|+|+.+ +||..+.+.. |+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2334688999999999866 8997765311 5555
Q ss_pred HHhccCCeEEEEEECCCCCCH--H-----HHHHHHHHHHh
Q 008262 363 NRMLRAGGYFAWAAQPVYKHE--E-----AQEEHWKEMLD 395 (572)
Q Consensus 363 ~RvLKPGG~lv~st~P~~~tl--~-----EL~~~w~~~e~ 395 (572)
.|.|+|||.++++.. +..+. . .+..+|..+..
T Consensus 212 a~eL~pGG~mvl~~~-gr~~~~~~~~~~~~l~~al~~lv~ 250 (384)
T 2efj_A 212 SEELISRGRMLLTFI-CKEDEFDHPNSMDLLEMSINDLVI 250 (384)
T ss_dssp HHHEEEEEEEEEEEE-CCCTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhccCCeEEEEEe-cCCCcccCcccHHHHHHHHHHHHH
Confidence 899999999999974 54444 3 67777766543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=90.76 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=70.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP 333 (572)
.+.+.+.+.+. ....+|||+|||+|.++..|+.. +|+++|+++.++..+.. .+...++.+ .+...|.+.+.
T Consensus 201 ~l~~~~~~~~~-----~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~-n~~~ng~~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 201 QMLEWALDVTK-----GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY-NIAANHIDNVQIIRMAAEEFT 274 (369)
T ss_dssp HHHHHHHHHTT-----TCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHH-HHHHTTCCSEEEECCCSHHHH
T ss_pred HHHHHHHHHhh-----cCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEECCHHHHH
Confidence 44444444443 12468999999999999998875 79999999998876654 344455533 34444544321
Q ss_pred --CCC--------------CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 334 --YPS--------------QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 --fp~--------------~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. .+||+|++..-. ..+..++.+.|+++|.+++.+
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HHHSSCCCCTTGGGSCGGGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEE
T ss_pred HHHhhccccccccccccccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEE
Confidence 111 379999965321 124566778888888888775
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-06 Score=84.65 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=58.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++..+...... .....+...|...+++
T Consensus 16 ~i~~~iv~~~~----~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 16 FVLQKIVSAIH----PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHC----CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCG
T ss_pred HHHHHHHHhcC----CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCH
Confidence 45666666665 245689999999999999999987 899999999888655433322 2234556667777776
Q ss_pred C----CCCeeEEEecc
Q 008262 335 P----SQAFDLIHCSR 346 (572)
Q Consensus 335 p----~~sFDlI~ss~ 346 (572)
+ .+.|| |+++.
T Consensus 90 ~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGSCCSSCEE-EEEEC
T ss_pred HHhccCCCeE-EEecC
Confidence 4 35688 66553
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-06 Score=84.61 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=59.9
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++++.+.+. ..+. +|||||||+|.++..|+++ +|+++|+++.++..+..... .....+...|...+++
T Consensus 34 ~i~~~Iv~~~~----~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 34 AHLRRIVEAAR----PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHC----CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCG
T ss_pred HHHHHHHHhcC----CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCCh
Confidence 45666766665 2345 8999999999999999887 89999999998865543322 2234556667777777
Q ss_pred CCC-CeeEEEeccc
Q 008262 335 PSQ-AFDLIHCSRC 347 (572)
Q Consensus 335 p~~-sFDlI~ss~~ 347 (572)
++. .+|.|+++..
T Consensus 106 ~~~~~~~~iv~NlP 119 (271)
T 3fut_A 106 EEVPQGSLLVANLP 119 (271)
T ss_dssp GGSCTTEEEEEEEC
T ss_pred hhccCccEEEecCc
Confidence 643 6899998743
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=85.75 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=75.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----------------------------------------
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----------------------------------------- 295 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----------------------------------------- 295 (572)
..+..|..+.. -.+...|||.+||+|.++..++..
T Consensus 188 ~lAa~ll~l~~----~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 188 TMAAALVLLTS----WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp HHHHHHHHHSC----CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHhC----CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 34444444443 234578999999999887555421
Q ss_pred -CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccccccC---ChHHHHHHHHHhccC-
Q 008262 296 -NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRA- 368 (572)
Q Consensus 296 -~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~---d~~~~L~ei~RvLKP- 368 (572)
.|+|+|+++.++..+..+ +...++. ..+...|...++.+ .+||+|+|+.-...-.. +...+..++.+.||+
T Consensus 264 ~~V~GvDid~~al~~Ar~N-a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQN-AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp CCEEEEESCHHHHHHHHHH-HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 399999999998766643 4445553 45666677778765 58999999855322211 223566667777776
Q ss_pred -CeEEEEEE
Q 008262 369 -GGYFAWAA 376 (572)
Q Consensus 369 -GG~lv~st 376 (572)
||.+++.+
T Consensus 342 ~g~~~~iit 350 (393)
T 3k0b_A 342 PTWSVYVLT 350 (393)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 88887776
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.7e-06 Score=89.51 Aligned_cols=155 Identities=11% Similarity=0.103 Sum_probs=90.9
Q ss_pred CCEEEEECCCCchhHHHhccC--------------------CeEEEeCCccchHHHHHHHHHH-cCCCcEEEec---ccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALE-RGAPAMVAAF---ATR 330 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvDiSp~dl~~a~~~~A~~-rg~~~~~~~~---d~e 330 (572)
.-+|+|+||++|..+..+... +|+..|+..+|........... ......+..+ ...
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 456999999999655443221 5778899999885443222110 0001233332 223
Q ss_pred CCCCCCCCeeEEEeccccccccCChH---------------------------------HHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDG---------------------------------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~---------------------------------~~L~ei~RvLKPGG~lv~st~ 377 (572)
.-.||++++|+|+|+.+ +||..+.+ .+|+-..+.|+|||.++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 45689999999999866 89976532 348888999999999999963
Q ss_pred CCCCC-----------HHHHHHHHHHHHhhhhhhchhhhhccCcEEEeeccchhHHHHHHhcC-CCCC
Q 008262 378 PVYKH-----------EEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAG-TIPP 433 (572)
Q Consensus 378 P~~~t-----------l~EL~~~w~~~e~~~~~l~w~~v~~~g~i~iw~kpl~~~c~ll~~aG-F~~p 433 (572)
+..+ .+.+..+|..+.... .+.-+.++ .-.+..|.....+....+.+.| |...
T Consensus 211 -gr~~~~~~~~~~~~~~~~l~~al~~mv~eG-li~~ek~d-~f~~P~y~ps~~E~~~~ie~~G~F~i~ 275 (359)
T 1m6e_X 211 -GRRSEDRASTECCLIWQLLAMALNQMVSEG-LIEEEKMD-KFNIPQYTPSPTEVEAEILKEGSFLID 275 (359)
T ss_dssp -ECSSSSSSSTTTSTTTHHHHHHHHHHHHTT-CSCCSTTG-GGCCCCBCCCSHHHHHHHHHTTTBCCE
T ss_pred -cCCCCCccccchHHHHHHHHHHHHHHHHcc-ccchhhhh-ccCCCccCCCHHHHHHHHHHcCCceEE
Confidence 3322 346777887664321 00001111 1113334444555666677774 3443
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=84.11 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=76.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc------------------------------------------
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP------------------------------------------ 294 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~------------------------------------------ 294 (572)
..+..|..+.. -.+..+|||.|||+|.++..++.
T Consensus 182 ~lAa~ll~~~~----~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 182 TLAAGLIYLTP----WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHHTSC----CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHhhC----CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 34444554443 23567899999999988766532
Q ss_pred CCeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccccccC---ChHHHHHHHHHhccC-
Q 008262 295 RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRA- 368 (572)
Q Consensus 295 ~~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~---d~~~~L~ei~RvLKP- 368 (572)
..|+|+|+++.++..+..+ +...++. ..+...|...++.+ ++||+|+|+.....-.. +...++.++.++||+
T Consensus 258 ~~V~GvDid~~ai~~Ar~N-a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIAREN-AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp CCEEEEESCHHHHHHHHHH-HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEECCHHHHHHHHHH-HHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 2599999999998766644 3344553 34555677777764 58999999865432211 224677777778876
Q ss_pred -CeEEEEEE
Q 008262 369 -GGYFAWAA 376 (572)
Q Consensus 369 -GG~lv~st 376 (572)
||.+++-+
T Consensus 336 ~g~~~~iit 344 (385)
T 3ldu_A 336 KNWSYYLIT 344 (385)
T ss_dssp BSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 88877765
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=81.11 Aligned_cols=103 Identities=9% Similarity=-0.029 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCC---CCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS---QAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~---~sFDlI~ 343 (572)
.++.+|||+|||+|..+..|++. .|+++|+++.++..... .+...++.+ .+...|...++... ++||.|+
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~-n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT-LLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 45689999999999988877652 79999999988865553 334445543 44455666554322 5799999
Q ss_pred ecc----c-cc------cc----c-CCh-------HHHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSR----C-RI------NW----T-RDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~----~-l~------hw----~-~d~-------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. . .+ .| . .+. ..+|..+.++|+ ||+++.++-
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 731 1 11 11 1 111 146777778887 999999874
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=8.9e-06 Score=91.33 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCchhH---HHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFG---AYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a---~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ 343 (572)
+...|||+|||+|.+. ....++ +|++|+-++.... ..+..+..+.. ..+...+++++..| +.+|+|+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~--a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV--TLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH--HHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH--HHHHHHhccCCCeEEEEeCcceeccCC-cccCEEE
Confidence 4457999999999773 222222 6899999984332 22334444443 34556678888776 6899999
Q ss_pred ecccccccc-CChHHHHHHHHHhccCCeEEE
Q 008262 344 CSRCRINWT-RDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 344 ss~~l~hw~-~d~~~~L~ei~RvLKPGG~lv 373 (572)
|-.+-.... +-....|....|.|||||.++
T Consensus 434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 754322111 222467788899999999975
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-05 Score=82.48 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc------------------------------------------CCeEEEeCCccchHHH
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP------------------------------------------RNVITMSIAPKDVHEN 310 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~------------------------------------------~~V~gvDiSp~dl~~a 310 (572)
.+...+||.+||+|.++...+. ..|+|+|+++.++..+
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 3457899999999988765542 1399999999998766
Q ss_pred HHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEeccccccccC---ChHHHHHHHHHhccC--CeEEEEEE
Q 008262 311 QIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRA--GGYFAWAA 376 (572)
Q Consensus 311 ~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~---d~~~~L~ei~RvLKP--GG~lv~st 376 (572)
.. .+...++. ..+...|...++.+ .+||+|+|+.-...-.. +...++.++.+.||+ ||.+++.+
T Consensus 273 r~-Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 273 RK-NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp HH-HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HH-HHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 54 44445654 34556677778765 58999999865332222 234677777778876 88888776
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.5e-06 Score=87.19 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc--------------CCC-cEEEeccccCCC-
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER--------------GAP-AMVAAFATRRLP- 333 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r--------------g~~-~~~~~~d~e~LP- 333 (572)
...+|||+|||+|.++..++.+ +|+++|+++..+..+..+..... ++. ..+...|...+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3578999999999998877653 69999999988766655444431 444 334444543332
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+.||+|++... .....++..+.+.||+||+++++.
T Consensus 127 ~~~~~fD~I~lDP~-----~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF-----GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 11357999996531 223688999999999999998874
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=88.02 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=75.0
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc----------------------CCeEEEeCCccchHHHHHHHH
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----------------------RNVITMSIAPKDVHENQIQFA 315 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~----------------------~~V~gvDiSp~dl~~a~~~~A 315 (572)
.++.|.+.+. .....+|||.+||+|.+...+.+ ..++|+|+++.++.-+.....
T Consensus 157 iv~~mv~~l~----p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 157 LIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 4455555554 23457899999999988755532 269999999987765554433
Q ss_pred HHcCCC------cEEEeccccCCC-CCCCCeeEEEeccccccccC------------C-hHHHHHHHHHhccCCeEEEEE
Q 008262 316 LERGAP------AMVAAFATRRLP-YPSQAFDLIHCSRCRINWTR------------D-DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 316 ~~rg~~------~~~~~~d~e~LP-fp~~sFDlI~ss~~l~hw~~------------d-~~~~L~ei~RvLKPGG~lv~s 375 (572)
. .+.. ..+...|.-..+ ...+.||+|+++..+..... + ...++..+.+.|||||++.+.
T Consensus 233 l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 233 L-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp T-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred H-hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 2 3433 223334432222 34578999999865433211 1 137899999999999999988
Q ss_pred EC
Q 008262 376 AQ 377 (572)
Q Consensus 376 t~ 377 (572)
.+
T Consensus 312 ~p 313 (541)
T 2ar0_A 312 VP 313 (541)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=84.22 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHhcc-----CCeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC-C-CCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL-P-YPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e~L-P-fp~~sFDlI~ 343 (572)
++.+|||++||+|.++..++. ..|+++|+++..+..+.. .++..++. ..+...|+..+ . ...+.||+|+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~-N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE-NFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 457899999999999988776 269999999987755443 44445554 33444454222 1 1246799999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. . .....++..+.+.|++||+++++.
T Consensus 131 lDP----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 864 1 223578999999999999998885
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-05 Score=89.36 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcccccc-CCCCCEEEEECCCCchhHH----Hh--cc---------C--CeEEEeCCccchHHHHHHHHHH
Q 008262 256 DQYLDQIAKMVPDITW-GHHIRVVMDAGCGVASFGA----YL--LP---------R--NVITMSIAPKDVHENQIQFALE 317 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~-~~~~~~VLDIGCGtG~~a~----~L--~~---------~--~V~gvDiSp~dl~~a~~~~A~~ 317 (572)
+.|-+.|...+.+... ......|||||||+|.+.. +. ++ . +|++||-++......+...+..
T Consensus 390 ~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng 469 (745)
T 3ua3_A 390 DVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRT 469 (745)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcC
Confidence 3455556555544321 1224579999999998742 11 12 2 8999999985443333322211
Q ss_pred cCCCcEEEeccccCCCCC-----CCCeeEEEecccccccc-CC-hHHHHHHHHHhccCCeEEE
Q 008262 318 RGAPAMVAAFATRRLPYP-----SQAFDLIHCSRCRINWT-RD-DGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 318 rg~~~~~~~~d~e~LPfp-----~~sFDlI~ss~~l~hw~-~d-~~~~L~ei~RvLKPGG~lv 373 (572)
-+-...+...+++++..+ .+..|+|+|-.+ ..+. .+ ....|..+.|.|||||.++
T Consensus 470 ~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 470 WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCCeEEEEeCchhhcccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 122345556677877663 578999998644 3322 22 2478888899999999865
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.4e-05 Score=79.48 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--C----eEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--N----VITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~----V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
..++.+.+.+. ..+..+|||||||+|.++..|+++ . |+++|+++.++..+... + .....+...|..
T Consensus 29 ~i~~~iv~~~~----~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~~D~~ 100 (279)
T 3uzu_A 29 GVIDAIVAAIR----PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHC----CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEESCGG
T ss_pred HHHHHHHHhcC----CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEECChh
Confidence 44566666665 245689999999999999999875 5 99999999988665544 2 223345566777
Q ss_pred CCCCC
Q 008262 331 RLPYP 335 (572)
Q Consensus 331 ~LPfp 335 (572)
.++++
T Consensus 101 ~~~~~ 105 (279)
T 3uzu_A 101 TFDFG 105 (279)
T ss_dssp GCCGG
T ss_pred cCChh
Confidence 87765
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=75.21 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=77.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-c----CCCcEEEeccc-cCCCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R----GAPAMVAAFAT-RRLPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-r----g~~~~~~~~d~-e~LPfp~~sFDlI 342 (572)
.++++||-||.|.|..++.+++. +|+.+|+.+..+.-+..-+... . .....+...|. +-+.-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 56789999999999999998875 6899999997664443322211 1 12233333343 3344557899999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHh
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~ 395 (572)
+.-. ........ ..+++.++|+|+|||.++..........+.+......+..
T Consensus 162 i~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~ 217 (294)
T 3o4f_A 162 ISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSH 217 (294)
T ss_dssp EESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred EEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHh
Confidence 9753 23222111 4899999999999999998642223344444444444433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.78 E-value=3e-05 Score=78.54 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
+...+.+|.+.. . ..+..+|||||||+|.|+.+.+++ .|+|+|++..+...+. .. ...+........+++
T Consensus 75 AAfKL~ei~eK~-~---Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi-~~-~~~g~~ii~~~~~~d 148 (282)
T 3gcz_A 75 GSAKLRWMEERG-Y---VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI-MR-TTLGWNLIRFKDKTD 148 (282)
T ss_dssp HHHHHHHHHHTT-S---CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CC-CBTTGGGEEEECSCC
T ss_pred HHHHHHHHHHhc-C---CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc-cc-ccCCCceEEeeCCcc
Confidence 444455555543 1 246679999999999999987754 6889998754221100 00 001111222222223
Q ss_pred CCCCCCCCeeEEEeccccccccCCh-----H--HHHHHHHHhccCC--eEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDD-----G--ILLLEVNRMLRAG--GYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~-----~--~~L~ei~RvLKPG--G~lv~st~ 377 (572)
...++.+.+|+|+|..+ .+ .... . .+|.-+.++|||| |.|++-.+
T Consensus 149 v~~l~~~~~DvVLSDmA-pn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 149 VFNMEVIPGDTLLCDIG-ES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp GGGSCCCCCSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hhhcCCCCcCEEEecCc-cC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 33456789999999754 44 2221 1 3566678999999 99999865
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=8.3e-05 Score=74.07 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR 331 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r-g~~~~~~~~d~e~ 331 (572)
...++.+.+.+. ..+..+|||||||+|.++..|+++ +|+++|+++.++.. ++++ .....+...|...
T Consensus 17 ~~i~~~iv~~~~----~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~-----~~~~~~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 17 EGVLKKIAEELN----IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVEN-----LKSIGDERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHHHTT----CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHH-----HTTSCCTTEEEECSCTTT
T ss_pred HHHHHHHHHhcC----CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHH-----HHhccCCCeEEEEcchhh
Confidence 345667777765 245689999999999999999876 69999999987743 3333 1223455667788
Q ss_pred CCCCCCC-eeEEEeccccccccCChHHHHHHHHHhc--cCCeEEEEE
Q 008262 332 LPYPSQA-FDLIHCSRCRINWTRDDGILLLEVNRML--RAGGYFAWA 375 (572)
Q Consensus 332 LPfp~~s-FDlI~ss~~l~hw~~d~~~~L~ei~RvL--KPGG~lv~s 375 (572)
+++++.. ...|+++.. .+. ...++.++.+.. -+.+.+++.
T Consensus 88 ~~~~~~~~~~~vv~NlP-y~i---~~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 88 FPFCSLGKELKVVGNLP-YNV---ASLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp CCGGGSCSSEEEEEECC-TTT---HHHHHHHHHHTGGGCSEEEEEEE
T ss_pred CChhHccCCcEEEEECc-hhc---cHHHHHHHHhcCCCCceEEEEEe
Confidence 8776421 225555532 222 234444444432 344444444
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.8e-05 Score=77.70 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-C--eEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-N--VITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-~--V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP 333 (572)
..++.+.+.+. ..+..+|||||||+|.++. +... + |+++|+++.++..+...... .....+...|...++
T Consensus 8 ~i~~~iv~~~~----~~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAIN----PQKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHC----CCTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcC----CCCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCC
Confidence 44566666654 2456789999999999999 7543 6 99999999887433321111 012345556777777
Q ss_pred CCC-----CCeeEEEecc
Q 008262 334 YPS-----QAFDLIHCSR 346 (572)
Q Consensus 334 fp~-----~sFDlI~ss~ 346 (572)
+++ +..|.|+++.
T Consensus 81 ~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHHHHTSCEEEEEEC
T ss_pred HHHhhcccCCceEEEECC
Confidence 542 2357888764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00038 Score=70.97 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+..+||||||++|.|+..++++ .|+|+|+...+...... ....+........+++...+..+.+|+|+|..+
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A- 156 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG- 156 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecCceeeecCCCCcCEEeecCc-
Confidence 46789999999999999999975 67888887532100000 000011112222222333345678999999744
Q ss_pred ccccCCh-------HHHHHHHHHhccCC-eEEEEEEC
Q 008262 349 INWTRDD-------GILLLEVNRMLRAG-GYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~-------~~~L~ei~RvLKPG-G~lv~st~ 377 (572)
.+ .... ..+|.-+.++|+|| |.|++-.+
T Consensus 157 Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 157 ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 44 2222 14566678999999 99999865
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00035 Score=73.52 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=70.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.++.+|||+||++|.|+..|.++ .|++||..+.+- .... .....+...|...+..+.+.||+|+|...
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~------~l~~-~~~V~~~~~d~~~~~~~~~~~D~vvsDm~--- 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ------SLMD-TGQVTWLREDGFKFRPTRSNISWMVCDMV--- 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH------HHHT-TTCEEEECSCTTTCCCCSSCEEEEEECCS---
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh------hhcc-CCCeEEEeCccccccCCCCCcCEEEEcCC---
Confidence 56799999999999999999987 799999987432 1111 12334555566666666678999998744
Q ss_pred ccCChHHHHHHHHHhccCC---eEEEEEECCCCCCHHHHHHHHHHHH
Q 008262 351 WTRDDGILLLEVNRMLRAG---GYFAWAAQPVYKHEEAQEEHWKEML 394 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPG---G~lv~st~P~~~tl~EL~~~w~~~e 394 (572)
.++...+.-+.+.|..| +.++..-.+......++.+....+.
T Consensus 280 --~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~ 324 (375)
T 4auk_A 280 --EKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQ 324 (375)
T ss_dssp --SCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHH
T ss_pred --CChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHH
Confidence 34556666666655554 5443333444444555555444333
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.65 E-value=9e-05 Score=82.04 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhc-------------------cCCeEEEeCCccchHHHHHHHHH
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL-------------------PRNVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~-------------------~~~V~gvDiSp~dl~~a~~~~A~ 316 (572)
...++.|.+++.. . ..+|||.+||+|.|...+. ...++|+|+++.++.-+......
T Consensus 231 ~~Vv~lmv~ll~p----~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l 305 (544)
T 3khk_A 231 KSIVTLIVEMLEP----Y-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI 305 (544)
T ss_dssp HHHHHHHHHHHCC----C-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----C-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH
Confidence 3455566666541 2 2489999999998876542 23689999999877665554443
Q ss_pred HcCCCcEE--EeccccCCC-CCCCCeeEEEecccccc--ccCC-------------------------h-HHHHHHHHHh
Q 008262 317 ERGAPAMV--AAFATRRLP-YPSQAFDLIHCSRCRIN--WTRD-------------------------D-GILLLEVNRM 365 (572)
Q Consensus 317 ~rg~~~~~--~~~d~e~LP-fp~~sFDlI~ss~~l~h--w~~d-------------------------~-~~~L~ei~Rv 365 (572)
.++...+ ...|.-..+ +....||+|+++.-+.. |..+ . -.++..+.+.
T Consensus 306 -~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~ 384 (544)
T 3khk_A 306 -RGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYH 384 (544)
T ss_dssp -TTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHT
T ss_pred -hCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHH
Confidence 3443222 233332223 45678999999875442 2110 0 1688999999
Q ss_pred ccCCeEEEEEEC
Q 008262 366 LRAGGYFAWAAQ 377 (572)
Q Consensus 366 LKPGG~lv~st~ 377 (572)
|||||++.+..+
T Consensus 385 Lk~gGr~aiVlP 396 (544)
T 3khk_A 385 LAPTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEEEE
T ss_pred hccCceEEEEec
Confidence 999999988864
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.6e-06 Score=82.14 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=50.2
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCc-------cchHHHHHHHHHHcCC-C-cEEEeccccC-CC-CCC--CC
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAP-------KDVHENQIQFALERGA-P-AMVAAFATRR-LP-YPS--QA 338 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp-------~dl~~a~~~~A~~rg~-~-~~~~~~d~e~-LP-fp~--~s 338 (572)
+..+|||+|||+|.++..|+.. +|+++|+++ .++..+..+. ...++ . ..+...|.+. ++ +++ ++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~-~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNP-ETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSH-HHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHH-HhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 4578999999999999988866 899999999 6665443222 11222 1 3344455544 33 444 78
Q ss_pred eeEEEecccccc
Q 008262 339 FDLIHCSRCRIN 350 (572)
Q Consensus 339 FDlI~ss~~l~h 350 (572)
||+|++...+.+
T Consensus 162 fD~V~~dP~~~~ 173 (258)
T 2r6z_A 162 PDIVYLDPMYPE 173 (258)
T ss_dssp CSEEEECCCC--
T ss_pred ccEEEECCCCCC
Confidence 999999866443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00027 Score=80.55 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=72.4
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc------------------------------------------
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP------------------------------------------ 294 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~------------------------------------------ 294 (572)
.++..|..+.. -.+...|||.+||+|.++...+.
T Consensus 177 ~LAa~ll~~~~----~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 177 TLAAAIVMRSG----WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp HHHHHHHHHTT----CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC----CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 34444444443 13457899999999988654331
Q ss_pred ----CCeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCC--CCCCCCeeEEEecccccc-ccCC--hH---HHHH
Q 008262 295 ----RNVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRL--PYPSQAFDLIHCSRCRIN-WTRD--DG---ILLL 360 (572)
Q Consensus 295 ----~~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~L--Pfp~~sFDlI~ss~~l~h-w~~d--~~---~~L~ 360 (572)
..|+|+|+++.++..+.. .+...|+.. .+...|...+ |...++||+|+|+.-... +... .. ..|.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~-N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~ 331 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRART-NARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLG 331 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence 269999999998866654 444556653 4555666666 344458999999854322 2111 12 3345
Q ss_pred HHHHhccCCeEEEEEE
Q 008262 361 EVNRMLRAGGYFAWAA 376 (572)
Q Consensus 361 ei~RvLKPGG~lv~st 376 (572)
++.+.+.|||.+++-+
T Consensus 332 ~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 332 RIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHHCTTCEEEEEE
T ss_pred HHHHhhCCCCeEEEEe
Confidence 5556666899998875
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00041 Score=79.51 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCchhHHHhccC-------CeEEEeCCccchHHHHHHHHHH-----cCCCc-EEEeccccCC-CCCCCCe
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALE-----RGAPA-MVAAFATRRL-PYPSQAF 339 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-------~V~gvDiSp~dl~~a~~~~A~~-----rg~~~-~~~~~d~e~L-Pfp~~sF 339 (572)
...+|||.|||+|.++..++.. .++|+|+++..+..+..+.... .+... .+...+.... +...+.|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 4679999999999988776543 5899999998775552222221 22222 2333333332 2345789
Q ss_pred eEEEeccccccccC---------------------------C-hHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCRINWTR---------------------------D-DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l~hw~~---------------------------d-~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+++.-...... + ...++..+.+.|++||++.+..+
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999876532111 1 12467889999999999999874
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00029 Score=77.98 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=76.2
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-------CCeEEEeCCccchHHHHHHHHHHcCCC---cEEEe
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAP---AMVAA 326 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-------~~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~ 326 (572)
..++.|.+++..........+|||.+||+|.+...+.+ ..++|+|+++.+..-+..+... ++.. ..+..
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~~~~I~~ 282 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL-HGVPIENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH-TTCCGGGEEEEE
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH-cCCCcCccceEe
Confidence 34555555554211123567999999999987765532 2699999999877655554433 4442 23444
Q ss_pred ccccCC--C-CCCCCeeEEEeccccc-cccC------C---------------hHHHHHHHHHhcc-CCeEEEEEEC
Q 008262 327 FATRRL--P-YPSQAFDLIHCSRCRI-NWTR------D---------------DGILLLEVNRMLR-AGGYFAWAAQ 377 (572)
Q Consensus 327 ~d~e~L--P-fp~~sFDlI~ss~~l~-hw~~------d---------------~~~~L~ei~RvLK-PGG~lv~st~ 377 (572)
.|.-.. | .....||+|+++.-+. .|.. + .-.++..+.+.|| +||++.+..+
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 454333 3 4567899999985432 2211 0 0147899999999 9999988864
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4e-05 Score=78.66 Aligned_cols=83 Identities=10% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP- 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP- 333 (572)
++++.+.+. ..+..+|||+|||+|.++..++++ .|+|+|+++.++..+..... ..+....+...+...++
T Consensus 15 l~e~l~~L~----~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~-~~g~~v~~v~~d~~~l~~ 89 (301)
T 1m6y_A 15 VREVIEFLK----PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSYREADF 89 (301)
T ss_dssp HHHHHHHHC----CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCGGGHHH
T ss_pred HHHHHHhcC----CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hcCCcEEEEECCHHHHHH
Confidence 444445554 245689999999999999888763 79999999998866554332 22323445555666654
Q ss_pred -CC---CCCeeEEEecc
Q 008262 334 -YP---SQAFDLIHCSR 346 (572)
Q Consensus 334 -fp---~~sFDlI~ss~ 346 (572)
+. .++||.|++..
T Consensus 90 ~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 90 LLKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHHTTCSCEEEEEEEC
T ss_pred HHHhcCCCCCCEEEEcC
Confidence 11 15899999754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0001 Score=78.88 Aligned_cols=108 Identities=14% Similarity=0.020 Sum_probs=67.7
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHH-cCCC-cEEEeccccC-CCC-CCCCeeEEEecccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE-RGAP-AMVAAFATRR-LPY-PSQAFDLIHCSRCR 348 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~-rg~~-~~~~~~d~e~-LPf-p~~sFDlI~ss~~l 348 (572)
+.+|||+|||+|..+..|+.. +|+++|+++.++..++.+.... .+.. ..+...|... ++. ++++||+|++....
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCCC
Confidence 589999999999999888876 7999999999887666544332 0443 3344455544 232 24689999986321
Q ss_pred c-------cccCChHHHHHHHHHhc-cCCeEEEEEECCCCCC
Q 008262 349 I-------NWTRDDGILLLEVNRML-RAGGYFAWAAQPVYKH 382 (572)
Q Consensus 349 ~-------hw~~d~~~~L~ei~RvL-KPGG~lv~st~P~~~t 382 (572)
. +-..+..--+.++.+.| +.+..+++...|+.+.
T Consensus 174 r~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP~ld~ 215 (410)
T 3ll7_A 174 RSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMIDL 215 (410)
T ss_dssp C-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECTTSCH
T ss_pred cCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCCCCCh
Confidence 1 11122223345555544 4456677776665543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=73.11 Aligned_cols=93 Identities=12% Similarity=0.030 Sum_probs=55.7
Q ss_pred CEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHH--HHHHHHc----C-C--CcEEEeccccC-CCCCCCCeeEEE
Q 008262 276 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQ--IQFALER----G-A--PAMVAAFATRR-LPYPSQAFDLIH 343 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~--~~~A~~r----g-~--~~~~~~~d~e~-LPfp~~sFDlI~ 343 (572)
.+|||+|||+|..+..++.+ +|+++|.++.+..-.. ++.+... + + ...+...|... ++...++||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 78999999999999888765 8999999996532221 2222211 1 1 12344444433 443234799999
Q ss_pred eccccccccCChHHHHHHHHHhccCCe
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGG 370 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG 370 (572)
+...+ +. .....++++..++||+.+
T Consensus 170 lDP~y-~~-~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDPMF-PH-KQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECCCC-CC-CCC-----HHHHHHHHHS
T ss_pred EcCCC-CC-cccchHHHHHHHHHHHhh
Confidence 98765 33 223456777778887765
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0023 Score=65.08 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=74.7
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhc---------cCCeEEEeCCccc---------------------
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLL---------PRNVITMSIAPKD--------------------- 306 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~---------~~~V~gvDiSp~d--------------------- 306 (572)
..+..+.+.+.. ...+..|||+|+..|..+..|+ +++|+++|....+
T Consensus 92 ~~L~~l~~~v~~---~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 92 ENIRQCVEDVIG---NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHH---TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHh---cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 344444444432 2456799999999997665542 4589999964321
Q ss_pred -----hHHHHHHHHHHcCC--C-cEEEecc-ccCCC-CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 307 -----VHENQIQFALERGA--P-AMVAAFA-TRRLP-YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 307 -----l~~a~~~~A~~rg~--~-~~~~~~d-~e~LP-fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+..+. +...+.++ . ..+..++ .+.|| ++.++||+|+.-.- ........|..+.+.|+|||++++..
T Consensus 169 ~~~~~~~~ar-~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 169 VLAVSEEEVR-RNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp HHCCCHHHHH-HHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cchhHHHHHH-HHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcC
Confidence 11122 22233344 2 3333333 24455 44678999997532 21223578999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 008262 377 QPVYKHEEAQEEHWKEML 394 (572)
Q Consensus 377 ~P~~~tl~EL~~~w~~~e 394 (572)
. ... ...+++|.++.
T Consensus 245 ~--~~~-~G~~~Av~Ef~ 259 (282)
T 2wk1_A 245 Y--MMC-PPCKDAVDEYR 259 (282)
T ss_dssp C--TTC-HHHHHHHHHHH
T ss_pred C--CCC-HHHHHHHHHHH
Confidence 3 222 23355555443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00061 Score=62.75 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=60.8
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCc-hhHHHhcc-C--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVA-SFGAYLLP-R--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG-~~a~~L~~-~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
.+.|.+.+... -....+|||||||.| ..+..|++ . +|+++|+++..+. +...|... |.
T Consensus 22 ~e~LaeYI~~~--~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~ 83 (153)
T 2k4m_A 22 WNDLAVYIIRC--SGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PR 83 (153)
T ss_dssp HHHHHHHHHHH--SCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CC
T ss_pred HHHHHHHHHhc--CCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-Cc
Confidence 34455554321 123479999999999 59999986 4 7999999997652 33334433 32
Q ss_pred CC--CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~--~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+ +.||+|.+.+. ..+....+.++.+.+ |.-+++..
T Consensus 84 ~~~Y~~~DLIYsirP----P~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 84 MEIYRGAALIYSIRP----PAEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp HHHHTTEEEEEEESC----CTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred ccccCCcCEEEEcCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 22 48999987654 245566666666644 56677774
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0024 Score=63.94 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=67.5
Q ss_pred ccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-cCCCcE-E
Q 008262 251 FIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RGAPAM-V 324 (572)
Q Consensus 251 f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-rg~~~~-~ 324 (572)
|...+...+.+|.+.- + .++..+|||+||+.|.|+.+.+++ .|.|.++... ++.. ..... .|...+ +
T Consensus 54 yRSRAayKL~EIdeK~--l--ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D-~~~~--P~~~~~~Gv~~i~~ 126 (269)
T 2px2_A 54 PVSRGTAKLRWLVERR--F--VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP-GHEE--PMLMQSYGWNIVTM 126 (269)
T ss_dssp CSSTHHHHHHHHHHTT--S--CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST-TSCC--CCCCCSTTGGGEEE
T ss_pred cccHHHHHHHHHHHcC--C--CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc-cccC--CCcccCCCceEEEe
Confidence 3444555566666663 2 357899999999999999999886 3345555432 1000 00000 111121 2
Q ss_pred Eec-cccCCCCCCCCeeEEEeccccccccCCh----H---HHHHHHHHhccCCe-EEEEEEC
Q 008262 325 AAF-ATRRLPYPSQAFDLIHCSRCRINWTRDD----G---ILLLEVNRMLRAGG-YFAWAAQ 377 (572)
Q Consensus 325 ~~~-d~e~LPfp~~sFDlI~ss~~l~hw~~d~----~---~~L~ei~RvLKPGG-~lv~st~ 377 (572)
... |...+ ....+|+|+|-.. -. .... . .+|.-+.++|+||| .|++-.+
T Consensus 127 ~~G~Df~~~--~~~~~DvVLSDMA-Pn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 127 KSGVDVFYK--PSEISDTLLCDIG-ES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp ECSCCGGGS--CCCCCSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred eccCCccCC--CCCCCCEEEeCCC-CC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 212 54443 3467999998643 22 2222 1 24656678999999 9999875
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00036 Score=69.91 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCCchhHHHhc----------------cCCeEEEeCCc---cchHHHH------HHHHHH---c------
Q 008262 273 HHIRVVMDAGCGVASFGAYLL----------------PRNVITMSIAP---KDVHENQ------IQFALE---R------ 318 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~----------------~~~V~gvDiSp---~dl~~a~------~~~A~~---r------ 318 (572)
.+..+|||||||+|..+..+. ..+++++|..+ .++..+. ...+++ .
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 345789999999997554422 12789999887 3333221 011111 1
Q ss_pred ---------C-CCcEEEeccccC-CCCCC----CCeeEEEeccccccccCC--hHHHHHHHHHhccCCeEEEE
Q 008262 319 ---------G-APAMVAAFATRR-LPYPS----QAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 319 ---------g-~~~~~~~~d~e~-LPfp~----~sFDlI~ss~~l~hw~~d--~~~~L~ei~RvLKPGG~lv~ 374 (572)
+ ....+...|+.+ ++..+ ..||+|+.....-.-.++ ...+|.++.|+|||||.|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0 111233344333 44322 279999975321111112 25799999999999999874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0023 Score=61.97 Aligned_cols=93 Identities=9% Similarity=-0.038 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCchhHHHhcc---CCeEEEeCCccchHHHHHHHHHHcCC--C--cEEEeccccC---------------
Q 008262 274 HIRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--P--AMVAAFATRR--------------- 331 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---~~V~gvDiSp~dl~~a~~~~A~~rg~--~--~~~~~~d~e~--------------- 331 (572)
+.++|||+|||. .+..|++ .+|+++|.++.....++..++ +.+. . ..+...++..
T Consensus 30 ~a~~VLEiGtGy--STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSGG--STVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCSH--HHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECchH--HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 357999999963 4444433 489999999977655554443 4453 2 2233333221
Q ss_pred CC--------C-CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 332 LP--------Y-PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 332 LP--------f-p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
++ . ..++||+|+.-.- .....+..+.+.|+|||.+++.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEET
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEe
Confidence 22 1 2378999997632 2246677788999999999765
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0016 Score=68.77 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC-------------CcEEEeccccC-C---
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-------------PAMVAAFATRR-L--- 332 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~-------------~~~~~~~d~e~-L--- 332 (572)
.++++||-||.|.|..++++++. +|+.+|+.+..+ +.+++.-. ...+...|... +
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-----e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-----DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 278 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-----HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-----HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhh
Confidence 35689999999999999998875 688999998655 33333210 01222223211 1
Q ss_pred CCCCCCeeEEEeccccccccCCh---------HHHHHHHHHhccCCeEEEEEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDD---------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~---------~~~L~ei~RvLKPGG~lv~st 376 (572)
.-..+.||+|+.-..-.....++ ..+++.++++|+|||.++...
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 11246799999753211111111 367888999999999998864
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.02 Score=58.30 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEec-c
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAF-A 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~-d 328 (572)
....+.++.+... ..+..+||||||++|.|+.+.+.. .|+|+|+......+.+ .....+.. ..+... |
T Consensus 79 ~~~KL~ei~~~~~----l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~--~~~ql~w~lV~~~~~~D 152 (321)
T 3lkz_A 79 GTAKLRWLVERRF----LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ--LVQSYGWNIVTMKSGVD 152 (321)
T ss_dssp HHHHHHHHHHTTS----CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC--CCCBTTGGGEEEECSCC
T ss_pred HHHHHHHHHHhcC----CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc--hhhhcCCcceEEEeccC
Confidence 3344555555422 245679999999999999977766 6999999875220000 00011111 122222 4
Q ss_pred ccCCCCCCCCeeEEEeccccccccCChH-------HHHHHHHHhccCC-eEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDDG-------ILLLEVNRMLRAG-GYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~~-------~~L~ei~RvLKPG-G~lv~st~ 377 (572)
...++- ..+|+|+|.-. .-..++. .+|.-+.+.|++| |-|++-.+
T Consensus 153 v~~l~~--~~~D~ivcDig--eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 153 VFYRPS--ECCDTLLCDIG--ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp TTSSCC--CCCSEEEECCC--CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred HhhCCC--CCCCEEEEECc--cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 455543 66999998643 2223331 3556667889999 99999865
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0067 Score=60.02 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEec-c
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAF-A 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~-d 328 (572)
....+.++.+.. .+ .+..+||||||++|.|+.+.+.. .|+|+|+......+.+ ..+..|.+. .+... |
T Consensus 63 a~~KL~ei~ek~-~l---~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~--~~~s~gwn~v~fk~gvD 136 (267)
T 3p8z_A 63 GSAKLQWFVERN-MV---IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV--PMSTYGWNIVKLMSGKD 136 (267)
T ss_dssp HHHHHHHHHHTT-SS---CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC--CCCCTTTTSEEEECSCC
T ss_pred HHHHHHHHHHhc-CC---CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc--hhhhcCcCceEEEeccc
Confidence 334455555544 22 45679999999999999977765 7999999875321000 011123333 23333 5
Q ss_pred ccCCCCCCCCeeEEEeccccccccCChH-------HHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWTRDDG-------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~~d~~-------~~L~ei~RvLKPGG~lv~st~ 377 (572)
...++ ...+|.|+|... . -..++. .+|.-+.+.|++ |-|++-.+
T Consensus 137 v~~~~--~~~~DtllcDIg-e-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl 187 (267)
T 3p8z_A 137 VFYLP--PEKCDTLLCDIG-E-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVL 187 (267)
T ss_dssp GGGCC--CCCCSEEEECCC-C-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEES
T ss_pred eeecC--CccccEEEEecC-C-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEc
Confidence 45554 367999999743 3 333331 355666788998 78888765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.018 Score=63.32 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----------------CCeEEEeCCccchHHHHHHHHHHc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALER 318 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvDiSp~dl~~a~~~~A~~r 318 (572)
...++.|.+++. .....+|+|-.||+|.|.....+ ..++|+|+.+.+..-+.......
T Consensus 203 ~~Vv~lmv~l~~----p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh- 277 (530)
T 3ufb_A 203 RPVVRFMVEVMD----PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH- 277 (530)
T ss_dssp HHHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhc----cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc-
Confidence 355666666665 34567899999999988654422 26899999987765555444443
Q ss_pred CCC-cEEEeccccCCCC----CCCCeeEEEecccccccc--------------CCh-HHHHHHHHHhcc-------CCeE
Q 008262 319 GAP-AMVAAFATRRLPY----PSQAFDLIHCSRCRINWT--------------RDD-GILLLEVNRMLR-------AGGY 371 (572)
Q Consensus 319 g~~-~~~~~~d~e~LPf----p~~sFDlI~ss~~l~hw~--------------~d~-~~~L~ei~RvLK-------PGG~ 371 (572)
+.. ..+...|.-..|+ ....||+|+++.-+..-. .+. -.++..+.+.|| +||+
T Consensus 278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr 357 (530)
T 3ufb_A 278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR 357 (530)
T ss_dssp TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence 332 2333334333332 235799999987642110 011 146777888887 7999
Q ss_pred EEEEEC
Q 008262 372 FAWAAQ 377 (572)
Q Consensus 372 lv~st~ 377 (572)
+.+..+
T Consensus 358 ~avVlP 363 (530)
T 3ufb_A 358 AAVVVP 363 (530)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998864
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0096 Score=62.46 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCC-------CcEEEeccccCCC-CCCCCee
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-------PAMVAAFATRRLP-YPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~-------~~~~~~~d~e~LP-fp~~sFD 340 (572)
.++.+|||+.+|.|.=+.+|++. .|+++|+++.-+.... +.....+. ...+...|...++ ...+.||
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~-~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ-KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHH-HHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHH-HHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56789999999999777666654 6999999987553332 22222222 2234444544443 3457899
Q ss_pred EEEecc-cc------cc------ccCCh----------HHHHHHHHHhccCCeEEEEEECCC
Q 008262 341 LIHCSR-CR------IN------WTRDD----------GILLLEVNRMLRAGGYFAWAAQPV 379 (572)
Q Consensus 341 lI~ss~-~l------~h------w~~d~----------~~~L~ei~RvLKPGG~lv~st~P~ 379 (572)
.|++.. |. .. |.... ..+|..+.+.|||||.|+.+|-..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 999522 11 11 10000 267888999999999999998433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=59.29 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~ 316 (572)
..++.+.+... .++..|||++||+|.++..++.. +++|+|+++.++..+..+...
T Consensus 223 ~l~~~~i~~~~-----~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 223 ELAERLVRMFS-----FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHHC-----CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44555555443 35679999999999988777654 899999999888665544443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0042 Score=79.85 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCCEEEEECCCCchhHHHhcc---------CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCCCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLP---------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPYPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~---------~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-LPfp~~sFDlI~ 343 (572)
+..+||+||.|+|..+..+.+ .+++..|+|+.....++.++.. +.......|.+. -++..++||+|+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvi 1316 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLV 1316 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEE
Confidence 356899999999976554321 1577789988766444433322 111111112222 234567899999
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.+ +|-..+....|.+++++|||||++++..
T Consensus 1317 a~~v-l~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1317 CNCA-LATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EECC---------------------CCEEEEEE
T ss_pred Eccc-ccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9877 5666788899999999999999998875
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.042 Score=56.00 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=60.8
Q ss_pred CCCCEEEEECC------CCchhH-HHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGC------GVASFG-AYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGC------GtG~~a-~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ 343 (572)
..+.+|||+|+ -.|++. +.+... .|+++|+.+... ....+...|+..+.. .+.||+|+
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s------------da~~~IqGD~~~~~~-~~k~DLVI 174 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS------------DADSTLIGDCATVHT-ANKWDLII 174 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC------------SSSEEEESCGGGEEE-SSCEEEEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc------------CCCeEEEcccccccc-CCCCCEEE
Confidence 46789999996 566643 334443 689999988532 122345556544332 47899999
Q ss_pred eccc---cccccC------Ch-HHHHHHHHHhccCCeEEEEEECCCCC
Q 008262 344 CSRC---RINWTR------DD-GILLLEVNRMLRAGGYFAWAAQPVYK 381 (572)
Q Consensus 344 ss~~---l~hw~~------d~-~~~L~ei~RvLKPGG~lv~st~P~~~ 381 (572)
|-.. .-+... .. +.++.=+.++|+|||.|++-.+-+.+
T Consensus 175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 8542 111111 12 35666678899999999999875555
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.026 Score=57.27 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=51.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC---
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--- 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--- 333 (572)
++++.+.+. ..+...+||.+||.|..+..|+++ .|+|+|.++.++..+.. .+. ....+...+...++
T Consensus 11 l~e~le~L~----~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L 82 (285)
T 1wg8_A 11 YQEALDLLA----VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHL 82 (285)
T ss_dssp HHHHHHHHT----CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHH
T ss_pred HHHHHHhhC----CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHH
Confidence 444555554 245679999999999999999886 79999999987754432 211 12333333444432
Q ss_pred --CCCCCeeEEEec
Q 008262 334 --YPSQAFDLIHCS 345 (572)
Q Consensus 334 --fp~~sFDlI~ss 345 (572)
...++||.|++.
T Consensus 83 ~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 83 AALGVERVDGILAD 96 (285)
T ss_dssp HHTTCSCEEEEEEE
T ss_pred HHcCCCCcCEEEeC
Confidence 123579999964
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.35 Score=49.47 Aligned_cols=88 Identities=18% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.++.+||-+|+|. |.++.++++. +|++++.++..+ +.+++.|....+ .+.+.+ . +.+|+|+-...
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~-----~~~~~lGa~~v~--~~~~~~--~-~~~D~vid~~g- 243 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKK-----QDALSMGVKHFY--TDPKQC--K-EELDFIISTIP- 243 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTH-----HHHHHTTCSEEE--SSGGGC--C-SCEEEEEECCC-
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHH-----HHHHhcCCCeec--CCHHHH--h-cCCCEEEECCC-
Confidence 5678999999874 6666666653 799998887644 566677765544 222332 2 27999995422
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+.++.++|++||.+++...
T Consensus 244 ------~~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 244 ------THYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ------SCCCHHHHHTTEEEEEEEEECCC
T ss_pred ------cHHHHHHHHHHHhcCCEEEEECC
Confidence 11257788899999999998753
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.91 E-value=0.37 Score=47.55 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc--CCeEEEeCCccch
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP--RNVITMSIAPKDV 307 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~--~~V~gvDiSp~dl 307 (572)
..++++.+... .++..|||..||+|+.+..... ++++|+|+++..+
T Consensus 200 ~l~~~~i~~~~-----~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~ 247 (260)
T 1g60_A 200 DLIERIIRASS-----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYV 247 (260)
T ss_dssp HHHHHHHHHHC-----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHHHHHhC-----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHH
Confidence 44555554433 4568999999999987766654 4899999998655
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.62 E-value=0.38 Score=49.61 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----C-CCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----L-PYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----L-Pfp~~sFDlI 342 (572)
.+..+||-+|||. |.++.++++. .|+++|.++. +.+.+++.|....+... .+. + ....+.+|+|
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~-~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES-----RLELAKQLGATHVINSK-TQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH-----HHHHHHHHTCSEEEETT-TSCHHHHHHHHTTSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH-----HHHHHHHcCCCEEecCC-ccCHHHHHHHhcCCCCcEE
Confidence 4678999999985 7777776653 4888887754 33566666654333211 111 1 1122379999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+-... ....+.++.++|++||.+++..
T Consensus 263 id~~g-------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 263 LESTG-------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EECSC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EECCC-------CHHHHHHHHHHHhcCCEEEEeC
Confidence 95422 1467889999999999998875
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.68 E-value=0.58 Score=48.83 Aligned_cols=96 Identities=17% Similarity=0.070 Sum_probs=60.4
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-C-----C-CCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-P-----Y-PSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-P-----f-p~~sFD 340 (572)
.++.+||-+|||. |.++.+++.. +|+++|.++. ..+++++.|.. ......+.+ . . ....||
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~--~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE-----RLKLLSDAGFE--TIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHH-----HHHHHHTTTCE--EEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH-----HHHHHHHcCCc--EEcCCCcchHHHHHHHHhCCCCCC
Confidence 4678999999986 7777776653 6899988764 33566666652 222211111 0 0 123699
Q ss_pred EEEeccccccc--------cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw--------~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+-... ... ..+....+.++.++|++||.+++..
T Consensus 257 vvid~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 257 CGVDAVG-FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEECSC-TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EEEECCC-CccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 9996432 111 0123457899999999999998764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=87.38 E-value=0.81 Score=46.91 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc--cc----CCC-CCCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA--TR----RLP-YPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d--~e----~LP-fp~~sFD 340 (572)
.++.+||-+|+|. |.++.+++.. +|+++|.++. ..+++++.|....+.... .+ .+. ...+.+|
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D 244 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT-----RLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPE 244 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCC
Confidence 4678999999874 7776666542 6888887753 336677777653332110 00 110 0015699
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+-... ....+.++.++|++||.+++..
T Consensus 245 ~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 245 VTIECTG-------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp EEEECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEECCC-------ChHHHHHHHHHhcCCCEEEEEe
Confidence 9995421 1457888999999999998864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=87.04 E-value=0.6 Score=43.33 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=53.7
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----C-C-CCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----L-P-YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~----L-P-fp~~sFDl 341 (572)
.++++||.+|+ |.|..+..++.. +|+++|.++... +.+++.+... ........ + . ...+.+|+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~-----~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-----EMLSRLGVEY-VGDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-----HHHHTTCCSE-EEETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHH-----HHHHHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeE
Confidence 46789999995 345555444432 788888765422 3444445432 22211111 0 0 11246999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.+.. ...+.++.++|++||.++...
T Consensus 111 vi~~~g--------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 111 VLNSLA--------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEECCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred EEECCc--------hHHHHHHHHHhccCCEEEEEc
Confidence 996421 256889999999999998764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=1.1 Score=45.72 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=28.1
Q ss_pred CCCCCeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEE
Q 008262 334 YPSQAFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv 373 (572)
+.+..||+|+--...-.-.++. ..+|++++++++|||.|+
T Consensus 182 l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 182 VENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp CCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred hcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 3445799999754322222222 589999999999999885
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.74 E-value=0.79 Score=47.45 Aligned_cols=89 Identities=18% Similarity=0.175 Sum_probs=57.6
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc---ccCCCCCCCCeeEEEec
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---TRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d---~e~LPfp~~sFDlI~ss 345 (572)
.++.+||-+|+|. |.++.+++.. +|++++.++..+ +.+++.|....+...+ .+.+. +.+|+|+..
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~-----~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~ 264 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-----EAAKALGADEVVNSRNADEMAAHL---KSFDFILNT 264 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-----HHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHHcCCcEEeccccHHHHHHhh---cCCCEEEEC
Confidence 4678999999974 6666666653 789999887644 4555566543322111 11221 579999964
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. . ...+.++.++|++||.++...
T Consensus 265 ~g-~------~~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 265 VA-A------PHNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp CS-S------CCCHHHHHTTEEEEEEEEECC
T ss_pred CC-C------HHHHHHHHHHhccCCEEEEec
Confidence 22 1 124677889999999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.89 E-value=1.5 Score=44.80 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CC---CCCe
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YP---SQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp---~~sF 339 (572)
.++.+||-+|+|. |.++..++.. +|+++|.++. ..+.+++.|....+...+.+.+. .. .+.+
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~ 241 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 241 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCC
Confidence 4678999999874 6666666553 6888887754 33566666755332211101110 01 2469
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+|+.... ....+.++.++|++||.++...
T Consensus 242 D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 242 NVTIDCSG-------NEKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SEEEECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CEEEECCC-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99985421 1456888999999999998864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.75 E-value=1 Score=46.84 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=61.0
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-----CC--CCCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----LP--YPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-----LP--fp~~sFD 340 (572)
.++.+||-+|||. |.++.++++. .|+++|.++. ..+++++.|.. ......+. +. .....+|
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA-----RLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCE--EEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH-----HHHHHHHcCCc--EEccCCcchHHHHHHHHhCCCCCC
Confidence 4678999999875 7777777653 5888887754 34677777753 22211111 10 1124699
Q ss_pred EEEeccccc---------cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRI---------NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~---------hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+-..... |. .++...+.++.++|++||.+++..
T Consensus 257 vvid~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKH-EAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGS-BCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCCcccccccccccc-cchHHHHHHHHHHHhcCCEEEEec
Confidence 999653211 11 233568999999999999998764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=1.9 Score=44.51 Aligned_cols=92 Identities=21% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc------cC-CCCCCCCee
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT------RR-LPYPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~------e~-LPfp~~sFD 340 (572)
.++.+||-+|+|. |.++..++.. .|+++|.++. ..+.+++.|....+...+. .. .....+.+|
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~D 255 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQAT-----KRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVD 255 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH-----HHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCC
Confidence 4678999999874 6666666553 6788877754 3466777776543321110 01 012234799
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+-.. .....+.++.++|++||.+++..
T Consensus 256 vvid~~-------G~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 256 VVIECA-------GVAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEECS-------CCHHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECC-------CCHHHHHHHHHHhccCCEEEEEe
Confidence 999542 12567899999999999998874
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=85.47 E-value=1 Score=46.02 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=59.3
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----C-CCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----P-YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----P-fp~~sFDl 341 (572)
.++.+||-+|+|. |.++.+++.. .|+++|.++. ..+.+++.|....+... .+++ . .....+|+
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~-----~~~~~~~lGa~~vi~~~-~~~~~~~v~~~t~g~g~D~ 238 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH-----CCDIALEYGATDIINYK-NGDIVEQILKATDGKGVDK 238 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH-----HHHHHHHHTCCEEECGG-GSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHHHHhCCceEEcCC-CcCHHHHHHHHcCCCCCCE
Confidence 4678899999875 6777766654 6888887653 34667777764333211 1111 0 12346999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+-... ....+.++.++|++||.++...
T Consensus 239 v~d~~g-------~~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 239 VVIAGG-------DVHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred EEECCC-------ChHHHHHHHHHHhcCCEEEEec
Confidence 995421 1357888999999999998875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=85.07 E-value=1.3 Score=45.06 Aligned_cols=91 Identities=22% Similarity=0.143 Sum_probs=56.4
Q ss_pred CCCCEEEEECCC--CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 008262 273 HHIRVVMDAGCG--VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCG--tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp~~sFDl 341 (572)
.++.+||-+|+| .|..+..++.. +|++++.++..+ +.+++.|....+... .+.+. .....+|+
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-----~~~~~lga~~~~~~~-~~~~~~~~~~~~~~~g~Dv 216 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT-----EELLRLGAAYVIDTS-TAPLYETVMELTNGIGADA 216 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH-----HHHHHHTCSEEEETT-TSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-----HHHHhCCCcEEEeCC-cccHHHHHHHHhCCCCCcE
Confidence 567899999997 46666666543 899999887644 455555654332211 11110 12347999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+.+.. ...+.+..++|++||.+++...
T Consensus 217 vid~~g--------~~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 217 AIDSIG--------GPDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEESSC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEECCC--------ChhHHHHHHHhcCCCEEEEEee
Confidence 996432 2233445589999999988753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=84.98 E-value=0.73 Score=46.28 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.++.+||-+|+| .|.++.++++. +|++++ ++... +++++.|....+ . |.+.+ .+.+|+|+-...
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~-----~~~~~lGa~~v~-~-d~~~v---~~g~Dvv~d~~g- 208 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQ-----ALAAKRGVRHLY-R-EPSQV---TQKYFAIFDAVN- 208 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCH-----HHHHHHTEEEEE-S-SGGGC---CSCEEEEECC---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhH-----HHHHHcCCCEEE-c-CHHHh---CCCccEEEECCC-
Confidence 567899999996 36777766654 899998 76544 556666653333 2 33444 568999995321
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+.++.++|++||.++...
T Consensus 209 -------~~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 -------SQNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------TTGGGEEEEEEEEEEC
T ss_pred -------chhHHHHHHHhcCCCEEEEEe
Confidence 122366789999999998874
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=84.91 E-value=0.61 Score=48.60 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHhcccccc--CCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccch
Q 008262 257 QYLDQIAKMVPDITW--GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDV 307 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~--~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl 307 (572)
..+++|.+.+..... ..+...|||||.|.|.++..|+++ +|+++++....+
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~ 95 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY 95 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH
Confidence 445666666541100 013578999999999999999853 799999998654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=0.76 Score=46.68 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=59.9
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC----CCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP----YPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP----fp~~sFDlI~s 344 (572)
.++.+||-+|+|. |.++.+++.. +|+++|.++. ..+.+++.|....+...+ +.+. -..+.+|+|+-
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~~~~lGa~~~i~~~~-~~~~~~~~~~~g~~d~vid 238 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDA-----KLNLARRLGAEVAVNARD-TDPAAWLQKEIGGAHGVLV 238 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHH-----HHHHHHHcCCCEEEeCCC-cCHHHHHHHhCCCCCEEEE
Confidence 4678999999974 7777777654 7999987764 336677777544332111 1110 01136899885
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... ....+.++.++|++||.+++..
T Consensus 239 ~~g-------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 239 TAV-------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp SSC-------CHHHHHHHHHHEEEEEEEEECS
T ss_pred eCC-------CHHHHHHHHHHhccCCEEEEeC
Confidence 321 2568899999999999998874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=1.1 Score=45.22 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCC-----CCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLP-----YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~LP-----fp~~sFDl 341 (572)
.+.++||-+|| |.|..+..++.. +|+++|.++..+ +.+++.+.... ..... +.+. ...+.+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~-----~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~ 217 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-----AYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDC 217 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHH-----HHHHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHhcCCcEE-EecCCHHHHHHHHHHHhCCCCeE
Confidence 46689999998 455555555432 788888765332 44444454322 22111 1110 11257999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.+.. ...+.++.++|++||.+++..
T Consensus 218 vi~~~g--------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 218 YFDNVG--------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEESSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred EEECCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 996532 235788999999999998764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=83.83 E-value=2.4 Score=42.44 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CCCCCCeeEEEecccccc
Q 008262 277 VVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 277 ~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-Pfp~~sFDlI~ss~~l~h 350 (572)
+||=+|+ |.|.++.++++. +|++++.++... +.+++.|....+...+.... ....+.+|+|+-...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~-----~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g--- 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTH-----GYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG--- 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH-----HHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH-----HHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC---
Confidence 3999997 357777777654 899999887543 55666665443322221111 123457999885421
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+.++.++|+++|.++...
T Consensus 221 -----~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 221 -----DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp -----HHHHHHHHHTEEEEEEEEECC
T ss_pred -----cHHHHHHHHHHhcCCEEEEEe
Confidence 238899999999999998874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.69 E-value=1.7 Score=44.76 Aligned_cols=92 Identities=14% Similarity=0.037 Sum_probs=59.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e~L-----Pfp~~sFDl 341 (572)
.+..+||-+|+|. |.++..+++. .|+++|.++..+ +++++.|....+...+ .+.+ ....+.+|+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~-----~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~ 266 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY-----ETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDY 266 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHH-----HHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-----HHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCE
Confidence 4668899999973 6666666653 699998887533 5677666544322111 0111 012347999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.++|++| |.+++..
T Consensus 267 vid~~g-------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 267 SFECIG-------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp EEECSC-------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred EEECCC-------CHHHHHHHHHHhhccCCEEEEEc
Confidence 995421 246789999999997 9998875
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=83.42 E-value=0.61 Score=46.88 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCCCeeEEEeccccccc-------------------cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 334 YPSQAFDLIHCSRCRINW-------------------TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw-------------------~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+++++||+|+++.-.... ......++.++.|+|||||.+++..
T Consensus 36 l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 36 FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467899999998654321 0112357789999999999998874
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=83.14 E-value=3.6 Score=42.28 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=55.2
Q ss_pred CCCEEEEECCCCchhHHHhcc--CCeEEEeCCccchHHHHHHHHHHcC----------------------CCcEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLP--RNVITMSIAPKDVHENQIQFALERG----------------------APAMVAAFAT 329 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~--~~V~gvDiSp~dl~~a~~~~A~~rg----------------------~~~~~~~~d~ 329 (572)
+...|+.+|||.......|.. .++.-+|+.-.++-+.+.+...+.+ ........|.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 457899999999998888875 3444444432233333333332220 1122333343
Q ss_pred cCCC--------C-CCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLP--------Y-PSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LP--------f-p~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.. . ..+...++++-.++..+.++. ..+|+.+.+.+ |+|.+++.+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e 232 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYD 232 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence 3321 1 234567888765544443333 36677777766 788776543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=83.09 E-value=2.3 Score=43.68 Aligned_cols=92 Identities=11% Similarity=-0.013 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~L-----Pfp~~sFDl 341 (572)
.++.+||-+|+|. |.++.++++. .|+++|.++..+ +++++.|....+...+. +.+ ....+.+|+
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-----~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dv 264 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-----PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY 264 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-----HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-----HHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence 4678999999874 6666666653 588998877543 56666665433211110 111 011247999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.++|++| |.+++..
T Consensus 265 vid~~g-------~~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 265 AVECAG-------RIETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp EEECSC-------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred EEECCC-------CHHHHHHHHHHHhcCCCEEEEEc
Confidence 995421 145788999999999 9998765
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=83.02 E-value=0.98 Score=46.47 Aligned_cols=90 Identities=19% Similarity=0.113 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp~~sFDlI 342 (572)
.++.+||-+|+|. |.++..++.. +|+++|.++. ..+.+++.|....+. .+.+.+. .....+|+|
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~~~~lGa~~vi~-~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE-----KLDRAFALGADHGIN-RLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHTCSEEEE-TTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch-----hHHHHHHcCCCEEEc-CCcccHHHHHHHHhCCCCceEE
Confidence 5678999999874 6666666543 7888887654 335666667644332 1111110 123479999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.... ...+.++.++|++||.+++..
T Consensus 262 id~~g--------~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 262 LEIAG--------GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEETT--------SSCHHHHHHHEEEEEEEEEEC
T ss_pred EECCC--------hHHHHHHHHHhhcCCEEEEEe
Confidence 96422 235778889999999999875
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.23 E-value=2.1 Score=43.95 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCC-----CCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLP-----YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~LP-----fp~~sFDl 341 (572)
.++.+||-+|+|. |.++..++.. .|+++|.++..+ +.+++.|....+...+. +.+. ...+.+|+
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-----~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~ 265 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-----EKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDF 265 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHHhCCceEEeccccchhHHHHHHHHhCCCCCE
Confidence 4668999999874 6666666542 588998877544 55666665432211110 1110 11247999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.++|++| |.+++..
T Consensus 266 vid~~g-------~~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 266 SLECVG-------NVGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp EEECSC-------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred EEECCC-------CHHHHHHHHHHhhcCCcEEEEEc
Confidence 995421 145788999999999 9998864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=82.05 E-value=2.7 Score=43.15 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=58.0
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~L-----Pfp~~sFDl 341 (572)
.+..+||-+|+|. |.++.+++.. .|+++|.++..+ +.+++.|....+...+. +.+ ....+.+|+
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-----~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~ 264 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-----AKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDF 264 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-----HHHHHhCCceEecccccchhHHHHHHHHhCCCCcE
Confidence 4668999999874 6666666542 588888877543 55666665432211110 111 011247999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.++|++| |.+++..
T Consensus 265 vid~~g-------~~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 265 SFEVIG-------RLDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp EEECSC-------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred EEECCC-------CHHHHHHHHHHhhcCCcEEEEec
Confidence 985421 145788999999999 9998764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=2.7 Score=43.17 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCC-----CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRL-----PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~-e~L-----Pfp~~sFDl 341 (572)
.++.+||-+|+|. |.++.+++.. .|+++|.++..+ +.+++.|....+...+. +.+ ....+.+|+
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~-----~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~ 263 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-----ARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDY 263 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-----HHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-----HHHHHcCCceEeccccccccHHHHHHHHhCCCCCE
Confidence 4678999999874 6666666543 588998877543 45556665433211110 111 011247999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st 376 (572)
|+-... ....+.++.++|+++ |.+++..
T Consensus 264 vid~~g-------~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 264 SFECIG-------NVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp EEECSC-------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred EEECCC-------cHHHHHHHHHhhccCCcEEEEEe
Confidence 995421 145788999999999 9998864
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=81.07 E-value=4.1 Score=40.46 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=36.1
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~ 393 (572)
+...||+|+.-. . +.......+..+...|+|||++++... ........+++|.++
T Consensus 179 ~~~~~dlv~ID~--D-~Y~~t~~~le~~~p~l~~GGvIv~DD~-~~~~w~G~~~A~~ef 233 (257)
T 3tos_A 179 PQTVIALAYFDL--D-LYEPTKAVLEAIRPYLTKGSIVAFDEL-DNPKWPGENIAMRKV 233 (257)
T ss_dssp TTCCEEEEEECC--C-CHHHHHHHHHHHGGGEEEEEEEEESST-TCTTCTHHHHHHHHH
T ss_pred CCCceEEEEEcC--c-ccchHHHHHHHHHHHhCCCcEEEEcCC-CCCCChHHHHHHHHH
Confidence 456799999753 2 223335789999999999999999863 221222446666544
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=80.92 E-value=1.8 Score=43.85 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=55.5
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHH-HcCCCcEEEeccccCCC-----CCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL-ERGAPAMVAAFATRRLP-----YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~-~rg~~~~~~~~d~e~LP-----fp~~sFDl 341 (572)
.++.+||-+|+ |.|..+..++.. +|++++.++. ..+.++ +.|....+...+.+.+. ...+.+|+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~-----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~ 228 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE-----KVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDI 228 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcE
Confidence 46689999997 456666665543 7888887653 234454 34543222111111110 01256999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.+.. ...+.++.++|++||.+++..
T Consensus 229 vi~~~g--------~~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 229 YFENVG--------GKMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEESSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred EEECCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 996532 247888999999999998764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.72 E-value=1.4 Score=44.88 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=56.4
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccCCC-----CCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLP-----YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d-~e~LP-----fp~~sFDl 341 (572)
.+..+||-+|+ |.|..+..++.. +|++++.++..+ +.+++.+....+ ... .+.+. ...+.+|+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~-----~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE-----ELFRSIGGEVFI-DFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH-----HHHHHTTCCEEE-ETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH-----HHHHHcCCceEE-ecCccHhHHHHHHHHhCCCCCE
Confidence 46689999998 356665555442 788888776533 445555543222 211 11110 01126999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.+.. ....+.++.+.|++||.++...
T Consensus 242 vi~~~g-------~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 242 VINVSV-------SEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEECSS-------CHHHHHHHTTSEEEEEEEEECC
T ss_pred EEECCC-------cHHHHHHHHHHHhcCCEEEEEe
Confidence 996532 1467889999999999998765
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=80.47 E-value=1.3 Score=44.69 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=56.5
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHH-HHcCCCcEEEeccccCCC-----CCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFA-LERGAPAMVAAFATRRLP-----YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A-~~rg~~~~~~~~d~e~LP-----fp~~sFDl 341 (572)
.++++||-+|+ |.|..+..++.. +|++++.++. ..+.+ ++.+....+...+ +.+. ...+.+|+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~-----~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~ 221 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE-----KCRFLVEELGFDGAIDYKN-EDLAAGLKRECPKGIDV 221 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTTCCSEEEETTT-SCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHcCCCEEEECCC-HHHHHHHHHhcCCCceE
Confidence 46789999998 356666665543 7888887754 23444 4555433221111 1110 11357999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.+.. ...+.++.+.|++||.+++..
T Consensus 222 vi~~~g--------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 222 FFDNVG--------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEESSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred EEECCC--------cchHHHHHHHHhhCCEEEEEe
Confidence 996432 247889999999999998864
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=80.43 E-value=1.9 Score=43.76 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=59.8
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----C-CCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----Y-PSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-----f-p~~sFDl 341 (572)
.+..+||-+|+|. |.++.++++. +|+++|.++. ..+.+++.|....+... +.+. . ....+|+
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~-----~~~~~~~lGa~~~i~~~--~~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDD-----RLALAREVGADAAVKSG--AGAADAIRELTGGQGATA 242 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHH-----HHHHHHHTTCSEEEECS--TTHHHHHHHHHGGGCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH-----HHHHHHHcCCCEEEcCC--CcHHHHHHHHhCCCCCeE
Confidence 4678999999874 6666666542 7999988764 34677777765433211 1110 0 1237999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+-... ....+.++.++|++||.+++..
T Consensus 243 v~d~~G-------~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 243 VFDFVG-------AQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEESSC-------CHHHHHHHHHHEEEEEEEEECS
T ss_pred EEECCC-------CHHHHHHHHHHHhcCCEEEEEC
Confidence 995421 2458899999999999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 572 | ||||
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 8e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 |
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 278 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 337
+D CG + L P+ T ++ ++ + A ++
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 338 AFDLIHCSRCRINWTRDDGIL---LLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 394
FDLI C N+ D L V+ L+ GG F + YK + +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 395 DLTTRLCWELVKKEGYIAIW 414
D WE ++ ++++
Sbjct: 161 DDEVFYYWENQFEDDLVSMY 180
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.3 bits (88), Expect = 0.002
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 10/169 (5%)
Query: 249 TQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVH 308
T+ ++ D Y+ + V IT HI +D GCG G L+P D
Sbjct: 5 TRDLYYNDDYVSFLVNTVWKITKPVHI---VDYGCGYGYLGLVLMPLLPEGSKYTGIDSG 61
Query: 309 ENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR--INWTRDDGILLLEVNRML 366
E + A E + + D + C + +L ++ +
Sbjct: 62 ETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSV 121
Query: 367 RAGGYFA-----WAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGY 410
+ GG W + + +++ L + +L ++ G
Sbjct: 122 KKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK 170
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 572 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.76 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.66 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.62 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.6 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.6 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.58 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.57 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.55 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.52 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.49 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.49 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.49 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.47 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.46 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.43 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.42 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.41 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.4 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.39 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.35 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.34 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.34 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.31 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.25 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.22 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.2 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.18 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.18 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.17 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.16 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.14 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.13 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.09 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.09 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.04 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.03 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.01 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.0 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.97 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.83 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.81 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.76 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.71 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.63 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.62 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.61 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.59 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.58 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.58 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.53 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.43 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.41 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.34 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.34 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.34 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.22 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.21 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.2 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.19 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.18 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.17 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.13 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.06 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.03 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.02 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.92 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.91 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.85 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.83 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.69 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.68 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.66 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.63 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.61 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.6 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.58 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.55 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.43 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.43 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.38 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.38 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.35 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.06 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.78 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.77 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.72 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.63 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.63 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.06 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.03 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.78 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.05 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.94 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.79 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.66 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.57 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.39 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.93 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.45 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.21 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.1 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.9 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.7 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.7 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.56 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.22 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.83 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 84.56 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.8 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 83.44 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.92 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 82.57 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 81.02 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.27 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.76 E-value=2.9e-18 Score=164.97 Aligned_cols=112 Identities=13% Similarity=0.280 Sum_probs=90.2
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPS 336 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~ 336 (572)
.++++.+. .++..+|||||||+|.++..|++. +|+|+|+|+.|+..++.... ..+.+ ..+...+.+.+|+++
T Consensus 5 ~~ll~~~~----l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~-~~~~~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 5 AKLMQIAA----LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIE-GNGHQQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHHHHHT----CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHhcC----CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccc-ccccccccccccccccccccc
Confidence 44555554 356789999999999999999877 89999999999877654333 34444 446667889999999
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++||+|+|..+++|+ +|+..+|.+++|+|||||+|++.+.
T Consensus 80 ~~fD~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHF-PNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccc-CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999999999886555 8999999999999999999999864
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=1.5e-17 Score=161.33 Aligned_cols=112 Identities=23% Similarity=0.357 Sum_probs=91.5
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPS 336 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~ 336 (572)
+.|.+.+. .+++.+|||||||+|.++..|+++ +|+|+|+|+.|+..++ +.+...+.. ..+...|++.+|+++
T Consensus 6 ~~l~~~~~----~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 6 GLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHhC----CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhcccccccccccccccccccccc
Confidence 33444444 367899999999999999999887 8999999999987665 444445554 445566889999999
Q ss_pred CCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 337 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++||+|+|..+++| .+|+..+|+++.|+|||||+++++.+
T Consensus 81 ~~fD~v~~~~~l~~-~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 81 DSFDIITCRYAAHH-FSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp TCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceeeeeceeec-ccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 99999999987555 58999999999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=9.1e-17 Score=152.92 Aligned_cols=118 Identities=18% Similarity=0.326 Sum_probs=91.8
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++.+...+... ..+..+|||||||+|.++..|++. +|+|+|+|+.|+..++ +.+...+........|++.+++
T Consensus 22 ~~~~~~~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 22 SRIETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCS
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccc
Confidence 3344444444322 134578999999999999999886 8999999999997765 4444455555566668899999
Q ss_pred CCCCeeEEEecccccccc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++||+|+|..+++|+. .+...+|+++.|+|||||.|++...
T Consensus 99 ~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 99 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 999999999999877763 2556899999999999999998863
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.2e-16 Score=154.10 Aligned_cols=99 Identities=21% Similarity=0.382 Sum_probs=83.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+..+|||||||+|.++..|++. +|+|+|+|+.|+ +.|++++....+ ..+++.+++++++||+|+|...++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l-----~~a~~~~~~~~~-~~~~~~l~~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEML-----EVAREKGVKNVV-EAKAEDLPFPSGAFEAVLALGDVLS 114 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHHTCSCEE-ECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCCCEEEEECCCCchhcccccccceEEEEeecccccc-----cccccccccccc-cccccccccccccccceeeecchhh
Confidence 35679999999999999999987 899999999877 556666655543 4578999999999999998765566
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+|+..+|+++.|+|||||.++++.+
T Consensus 115 ~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 115 YVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 669999999999999999999999863
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.66 E-value=1.3e-16 Score=159.25 Aligned_cols=119 Identities=17% Similarity=0.226 Sum_probs=93.5
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~ 331 (572)
...+.+.+.+.......++.+|||||||+|.++..|+++ +|+|+|+|+.++..+.. .+...++. ..+...+.++
T Consensus 50 ~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~-~~~~~gl~~~v~~~~~d~~~ 128 (282)
T d2o57a1 50 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLE 128 (282)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhc-cccccccccccccccccccc
Confidence 344455554433222457789999999999999988765 79999999998866553 44444543 3466668899
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+++++||+|+|..+++|+ +++..+|++++|+|||||+|++++.
T Consensus 129 l~~~~~sfD~V~~~~~l~h~-~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 129 IPCEDNSYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp CSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhccchhhhc-cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999999999999987787 7889999999999999999999863
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.62 E-value=1.6e-15 Score=146.11 Aligned_cols=120 Identities=12% Similarity=0.065 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC------CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAMVAAFA 328 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d 328 (572)
++...+.+...+... ..+..+|||||||+|..+..|++. +|+|+|+|+.|+..+....+. .+....+....
T Consensus 22 Y~~~~~~i~~~~~~~--~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~~~~~~ 98 (225)
T d1im8a_ 22 YSNIITAIGMLAERF--VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILC 98 (225)
T ss_dssp HHHHHHHHHHHHHHH--CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHh--cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccchhhhcc
Confidence 444444444444432 246689999999999988877642 799999999999776644432 23322222222
Q ss_pred ccCCCCCCCCeeEEEecccccccc-CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~-~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+.++++.+.+|+|+|+.+++++. ++...+|++++|+|||||.|++++.
T Consensus 99 ~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 99 NDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp SCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 344455667899999988766553 3557999999999999999999875
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.5e-15 Score=148.29 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~ 329 (572)
....++.|.+.+. ..++.+|||||||+|.++..|+++ .|+|+|+|+.|+..+. +.+...++. ..+...|.
T Consensus 18 ~~~~~~~l~~~~~----l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 18 TEEKYATLGRVLR----MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp CHHHHHHHHHHTC----CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHHcC----CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHH
Confidence 4456677777776 356789999999999999888764 7999999999886654 445556654 34556677
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.+ +++++||+|+|..+++|+ .|...+|.+++|+|||||++++..+
T Consensus 93 ~~~-~~~~~fD~v~~~~~~~~~-~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGY-VANEKCDVAACVGATWIA-GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTC-CCSSCEEEEEEESCGGGT-SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhc-cccCceeEEEEEehhhcc-CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 777 468999999999887766 7889999999999999999999863
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.5e-15 Score=143.96 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=79.1
Q ss_pred CCEEEEECCCCchhHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccccccCC
Q 008262 275 IRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 354 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d 354 (572)
..+|||||||+|.++..+. .++|+|+|+.++ +.++++++ .+...+.+.+++++++||+|+|..+++|+ ++
T Consensus 37 ~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~-----~~a~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d 106 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK--IKIGVEPSERMA-----EIARKRGV--FVLKGTAENLPLKDESFDFALMVTTICFV-DD 106 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT--CCEEEESCHHHH-----HHHHHTTC--EEEECBTTBCCSCTTCEEEEEEESCGGGS-SC
T ss_pred CCeEEEECCCCcccccccc--eEEEEeCChhhc-----cccccccc--ccccccccccccccccccccccccccccc-cc
Confidence 3579999999999998885 579999998876 45555543 45566789999999999999999887777 88
Q ss_pred hHHHHHHHHHhccCCeEEEEEEC
Q 008262 355 DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 355 ~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+..+|++++|+|||||.+++.++
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEec
Confidence 99999999999999999999975
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.8e-15 Score=149.13 Aligned_cols=115 Identities=17% Similarity=0.298 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
.+..+..+.+.++ .+..+|||||||+|.++..|++. .++|+|+|+.|+ +.|+++.....+...|++
T Consensus 70 ~~~~~~~l~~~~~-----~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-----~~a~~~~~~~~~~~~d~~ 139 (268)
T d1p91a_ 70 RDAIVAQLRERLD-----DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-----KAAAKRYPQVTFCVASSH 139 (268)
T ss_dssp HHHHHHHHHHHSC-----TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTT
T ss_pred HHHHHHHHHHhcC-----CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-----hhhhcccccccceeeehh
Confidence 3444444444444 46789999999999999888765 689999999877 455555555667777899
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
.+|+++++||+|++..+.++ +.|+.|+|||||+|+++++ ..+.+.|++.
T Consensus 140 ~l~~~~~sfD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p-~~~~l~el~~ 188 (268)
T d1p91a_ 140 RLPFSDTSMDAIIRIYAPCK--------AEELARVVKPGGWVITATP-GPRHLMELKG 188 (268)
T ss_dssp SCSBCTTCEEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEE-CTTTTHHHHT
T ss_pred hccCCCCCEEEEeecCCHHH--------HHHHHHHhCCCcEEEEEee-CCcchHHHHH
Confidence 99999999999998766433 5789999999999999984 7777777654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=4.2e-15 Score=144.28 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.+.++|||||||+|.++..|++. +|+|+|+|+.|+..++.+ +.+++....+...|++.++++ ++||+|+|....++
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~-~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccc-cccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 45679999999999999999877 899999999999776644 445666666777889999987 68999999765455
Q ss_pred ccC--ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTR--DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~--d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. +...+|++++++|||||+|++..+
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 532 345899999999999999999853
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.8e-15 Score=142.61 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=85.7
Q ss_pred HHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCC
Q 008262 262 IAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQ 337 (572)
Q Consensus 262 L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~ 337 (572)
+.+.+.......+..+|||||||+|.++..|+.+ +|+|+|+|+.|+..++.... ..+... .+...|++.++++++
T Consensus 48 l~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~-~~~~~~~~f~~~d~~~~~~~~~ 126 (222)
T d2ex4a1 48 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEPD 126 (222)
T ss_dssp HHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTG-GGGGGEEEEEECCGGGCCCCSS
T ss_pred HHHHHHhccCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccc-cccccccccccccccccccccc
Confidence 4444443323345688999999999999987755 69999999999866654332 233322 455668899999999
Q ss_pred CeeEEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 338 AFDLIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+||+|+|..+++|+ ++. ..+|.+++++|||||.+++++.
T Consensus 127 ~fD~I~~~~~l~h~-~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 127 SYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccc-hhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 99999999998887 443 4899999999999999999863
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.55 E-value=1.1e-14 Score=145.53 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=90.7
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e 330 (572)
+.|++.|.+.+..+ .++.+|||||||+|.++..|++. +|+|+|+|+.++..+.. .+...+....+...|.+
T Consensus 12 ~d~l~~l~~~~~~~---~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~-~~~~~~~~~~f~~~d~~ 87 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI---TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLEGDAT 87 (281)
T ss_dssp HHHHHHHHHTTSCC---CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHH-HHHSSSSEEEEEESCTT
T ss_pred HHHHHHHHHHHhcc---CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhc-ccccccccccccccccc
Confidence 45667776665432 46789999999999999888763 69999999998866653 33334444556666888
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.++++ ++||+|+|+.+++|+ +++..+|++++|+|||||.+++.+
T Consensus 88 ~~~~~-~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 88 EIELN-DKYDIAICHAFLLHM-TTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp TCCCS-SCEEEEEEESCGGGC-SSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccc-CCceEEEEehhhhcC-CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 88876 579999999886665 889999999999999999999886
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.52 E-value=2.9e-14 Score=138.73 Aligned_cols=116 Identities=21% Similarity=0.312 Sum_probs=87.0
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
...+.+.+.+... ..+.++|||||||+|.++..|+++ +|+|+|+|+.|+..++. .+...+....+...|+..+++
T Consensus 22 ~~~~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~-~~~~~~~~v~~~~~d~~~~~~ 98 (246)
T d1y8ca_ 22 KWSDFIIEKCVEN--NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHHTT--TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCEEECCCGGGCCC
T ss_pred HHHHHHHHHHHHh--CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccc-cccccCccceeeccchhhhcc
Confidence 3344455555432 245689999999999999999987 79999999999977653 444566666677778888876
Q ss_pred CCCCeeEEEeccccccccC---ChHHHHHHHHHhccCCeEEEEEE
Q 008262 335 PSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~---d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. ++||+|+|....+++.. +...+|++++++|||||.|++..
T Consensus 99 ~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred c-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4 78999998643333333 33579999999999999999874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=4.5e-14 Score=142.43 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=97.2
Q ss_pred ccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC
Q 008262 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (572)
Q Consensus 244 Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~ 320 (572)
|+.+...+...+...++.+.+.+. ..++.+|||||||.|.++.+++++ +|+|+++|+..+..++ +.+.+.++
T Consensus 35 ~~~~~~tL~~Aq~~k~~~~~~~l~----l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l 109 (291)
T d1kpia_ 35 FERPDMTLEEAQYAKRKLALDKLN----LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDS 109 (291)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHTTC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcC----CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhcc
Confidence 344444555667777888888886 467899999999999999998865 8999999997665444 44555666
Q ss_pred CcEEEeccccCCCCCCCCeeEEEeccccccccCC--------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 321 PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 321 ~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d--------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
...+.. ...+.++.+++||.|+|..++.|..+. ...+|++++|+|||||.+++.+.
T Consensus 110 ~~~v~~-~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 110 PRRKEV-RIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp SSCEEE-EECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred chhhhh-hhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 543322 123445667899999999999998542 47999999999999999999874
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=6.5e-14 Score=140.43 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=89.7
Q ss_pred cccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcE--E
Q 008262 250 QFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--V 324 (572)
Q Consensus 250 ~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~--~ 324 (572)
.....+...++.+.+.+. ..++.+|||||||+|.++.+++++ +|+|+|+|+.++..++ +.+++.++... +
T Consensus 32 tL~~AQ~~k~~~~~~~l~----l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~ 106 (280)
T d2fk8a1 32 TLEEAQYAKVDLNLDKLD----LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQV 106 (280)
T ss_dssp CHHHHHHHHHHHHHTTSC----CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEE
T ss_pred CHHHHHHHHHHHHHHHcC----CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhh
Confidence 344556667777777775 367899999999999999888765 8999999998775544 44555565432 2
Q ss_pred EeccccCCCCCCCCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 325 AAFATRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 325 ~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
...|...+ +++||.|+|..+++|+... ...+|+++.|+|||||.+++.+
T Consensus 107 ~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 107 LLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp EESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 22233333 4789999999999998533 3789999999999999999976
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=4.9e-14 Score=133.07 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=81.1
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+.+|||||||+|..+..|+++ +|+|+|+|+.++..+.. .+.+.++.. .+...|...+++ +++||+|+|..+++|+
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER-IKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFL 108 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHH-Hhhhccccchhhhheecccccc-cccccEEEEeeeeecC
Confidence 458999999999999999988 89999999999976653 444566654 344456677775 6899999999987777
Q ss_pred cCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 352 TRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 352 ~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.... ..+|.++.++|||||++++.++
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4332 5899999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.47 E-value=1.6e-13 Score=132.11 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=79.4
Q ss_pred CCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEeccccccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw 351 (572)
+.+|||||||+|.++..|+++ +|+|+|+|+.++. .|+.+.. ...+...+.+.+++ +++||+|+|..+++|.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~-----~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAIS-----HAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHH-----HHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhh-----hhhccccccccccccccccccc-ccccccccccceeEec
Confidence 467999999999999999886 8999999998774 4443322 23344556677775 5899999999887776
Q ss_pred cCChHHHHHHHH-HhccCCeEEEEEECCCCCCH
Q 008262 352 TRDDGILLLEVN-RMLRAGGYFAWAAQPVYKHE 383 (572)
Q Consensus 352 ~~d~~~~L~ei~-RvLKPGG~lv~st~P~~~tl 383 (572)
+|+..+|.++. |+|||||.++++.+ .....
T Consensus 95 -~d~~~~l~~i~~~~Lk~gG~l~i~~p-n~~~~ 125 (225)
T d2p7ia1 95 -DDPVALLKRINDDWLAEGGRLFLVCP-NANAV 125 (225)
T ss_dssp -SSHHHHHHHHHHTTEEEEEEEEEEEE-CTTCH
T ss_pred -CCHHHHHHHHHHHhcCCCceEEEEeC-CcccH
Confidence 88899999998 89999999999974 33433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.46 E-value=6.1e-14 Score=138.40 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=80.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
....+|||+|||+|.++..|+.+ .|+++|+++.|+..++.... +.. ..+...+++.+++++++||+|+|..++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA---GMPVGKFILASMETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT---TSSEEEEEESCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc---ccccceeEEccccccccCCCccceEEeeccc
Confidence 46689999999999999887754 69999999988855543221 222 234556788999999999999999998
Q ss_pred ccccCCh--HHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDD--GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~--~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+ .+. ..+|++++++|||||++++...
T Consensus 169 ~hl-~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 169 IYL-TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 887 443 4889999999999999999863
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.7e-13 Score=135.77 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC----------CeEEEeCCccchHHHHHHHHHHcCCCcEEE---ecccc------CCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAPAMVA---AFATR------RLP 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~---~~d~e------~LP 333 (572)
++..+|||||||+|.++..|+.. .++|+|+|+.|+..+....+.......... ....+ ..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34447999999999987776542 578999999988666554443333333221 11111 235
Q ss_pred CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 334 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++++||+|+|..+++|+ +|+..+|++++++|||||++++...
T Consensus 119 ~~~~~fD~I~~~~~l~~~-~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSCCCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceeEEEEccceecC-CCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 678999999999885555 8999999999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.43 E-value=1.2e-13 Score=135.16 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCC-CCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPY-PSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e~LPf-p~~sFDlI~ss~ 346 (572)
.+..+|||||||+|..+..+++. +|+|+|+|+.|+..+... +.+.+. ...+...|+...++ ..++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 45689999999999888888664 699999999999776533 333332 34455667766665 467899999998
Q ss_pred ccccccCCh---HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++|...+. ..+|.++.|+|||||+|+++++
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 877765443 4799999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=1.2e-13 Score=136.71 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~h 350 (572)
.++.+|||+|||+|.++..++.. +|+|+|+++.++..++ +.++..++...+...+... .++.++||+|+++...
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~-- 194 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYA-- 194 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCH--
T ss_pred CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEeccccc-cccccccchhhhcccc--
Confidence 46789999999999998887765 8999999999997666 4555667766665555433 3456899999987442
Q ss_pred ccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 351 WTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 351 w~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.....++.++.|+|||||+|+++..
T Consensus 195 --~~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 195 --ELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 2246788999999999999999864
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.41 E-value=1.1e-13 Score=127.81 Aligned_cols=103 Identities=10% Similarity=-0.047 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHc-------------CCCcEEEeccccCCC-CCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-------------GAPAMVAAFATRRLP-YPS 336 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~r-------------g~~~~~~~~d~e~LP-fp~ 336 (572)
.++.+|||+|||+|..+.+|+++ +|+|+|+|+.|+..+.. .+.+. +....+...+...++ ...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFT-ERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHH-HHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHH-Hhccccchhhhhhhhhccccccceecccccccccccc
Confidence 56789999999999999999977 89999999998865543 22211 111223344555555 345
Q ss_pred CCeeEEEeccccccccCC-hHHHHHHHHHhccCCeEEEEEE
Q 008262 337 QAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 337 ~sFDlI~ss~~l~hw~~d-~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+||+|++..++++...+ ...+++++.++|||||.+++..
T Consensus 98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999887776433 3689999999999999998875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=3.8e-13 Score=126.90 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=89.5
Q ss_pred CCeeeccCCCccccc-cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIH-GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFA 315 (572)
Q Consensus 239 g~~~~Fpggg~~f~~-g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A 315 (572)
|+.+.|......|.. +.+...+.|.+.+. ..+..+|||+|||+|.++..++.. +|+++|+++.++..+.....
T Consensus 20 g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~----~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~ 95 (194)
T d1dusa_ 20 GKKLKFKTDSGVFSYGKVDKGTKILVENVV----VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIK 95 (194)
T ss_dssp TEEEEEEEETTSTTTTSCCHHHHHHHHHCC----CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH
T ss_pred CeeEEEEcCCCccCCCCcCHHHHHHHHhCC----cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHH
Confidence 444555333223322 22333444566665 356789999999999999999876 89999999988866654433
Q ss_pred HHcCCC---cEEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 316 LERGAP---AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 316 ~~rg~~---~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..++. ..+...|... ++++++||+|+|+.++++.......++.++.++|||||.+++..
T Consensus 96 -~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 96 -LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp -HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 33333 2344445443 56788999999987754442224689999999999999998864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=6.4e-13 Score=133.50 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=94.4
Q ss_pred ccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC
Q 008262 244 FPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA 320 (572)
Q Consensus 244 Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~ 320 (572)
|..+...+...+...++.+++.+. .+++.+|||||||.|.++.++++. +|+|+++|+..+..++ +.+.+.+.
T Consensus 36 ~~~~~~tL~eAQ~~k~~~~~~~l~----l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~-~~~~~~g~ 110 (285)
T d1kpga_ 36 FERDDMTLQEAQIAKIDLALGKLG----LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQ-QLVANSEN 110 (285)
T ss_dssp CSSTTCCHHHHHHHHHHHHHTTTT----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTCCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcC----CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHH-HHHHhhhh
Confidence 334444555677778888888876 467899999999999999988775 8999999987665444 33334444
Q ss_pred Cc--EEEeccccCCCCCCCCeeEEEeccccccccC-ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 321 PA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 321 ~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~-d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. .+...|...++ ++||.|+|..++.|... +...+|+++.|+|||||.+++.+.
T Consensus 111 ~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 111 LRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp CSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 32 23334555553 68999999999999864 347899999999999999999763
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.8e-13 Score=128.09 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHH-----------------cCCCcEEEeccccCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE-----------------RGAPAMVAAFATRRLP 333 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~-----------------rg~~~~~~~~d~e~LP 333 (572)
.+..+|||+|||+|..+..|+++ +|+|+|+|+.++..++.+.... .+....+...|...++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 46689999999999999999988 8999999998875444322110 0112233444554553
Q ss_pred -CCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEE
Q 008262 334 -YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 -fp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st 376 (572)
...+.||+|+...+++|+..+. ..+++++.++|||||++++.+
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 5678999999998888886554 689999999999999988875
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.3e-13 Score=130.69 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecccc--
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-- 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e-- 330 (572)
..+.+.+++.+. .++.+|||||||+|.++..+++. +|+++|+++.++..+... +...+........+..
T Consensus 40 ~~~~~~la~~~~-----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ 113 (229)
T d1zx0a1 40 TPYMHALAAAAS-----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW-APRQTHKVIPLKGLWEDV 113 (229)
T ss_dssp HHHHHHHHHHHT-----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHH-GGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhc-----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHH-hhhccccccccccccccc
Confidence 445556665554 35689999999999999999875 799999999888655432 3233333333333322
Q ss_pred CCCCCCCCeeEEEe-----ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHC-----SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~s-----s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..++++++||.|+. .....|+ .+...++++++|+|||||.|++..
T Consensus 114 ~~~~~~~~fD~i~fD~~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 114 APTLPDGHFDGILYDTYPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccceeecccccccccccc-cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 33567889999983 3344444 566789999999999999998753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.34 E-value=1.6e-12 Score=121.75 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC--cEEEecccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATR 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e 330 (572)
..+....+...+. ..++.+|||||||+|.++..++.. +|+++|+++.++..+..+ ++..++. ..+...+..
T Consensus 18 ~~eir~~il~~l~----~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n-~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 18 AMEVRCLIMCLAE----PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CHHHHHHHHHHHC----CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHH
T ss_pred hHHHHHHHHHhcC----CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHH-HHHcCCCcceEEEECchh
Confidence 3444455555554 357899999999999999999877 899999999998766644 4455553 345556667
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++++....||+|++.... .+...++.++.+.|||||++++..
T Consensus 93 ~~~~~~~~~D~v~~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSG----GELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HHHTTSCCEEEEEESCCT----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcccccCCcCEEEEeCcc----ccchHHHHHHHHHhCcCCEEEEEe
Confidence 677777899999987653 334789999999999999999885
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=6.3e-13 Score=132.86 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=78.4
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC-----cEEEeccc-
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-----AMVAAFAT- 329 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~-----~~~~~~d~- 329 (572)
+.+.+.+.+.. ....+|||||||+|.++..|+++ +|+|+|+|+.|+..+...... ++.. ..+...+.
T Consensus 44 ~~~~l~~~l~~----~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 44 YKAWLLGLLRQ----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWL 118 (292)
T ss_dssp HHHHHHHHHHH----TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGG
T ss_pred HHHHHHHHhhh----cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHh-cccccccceeeeeecccc
Confidence 44455555552 34578999999999999999887 899999999999766543332 2221 11222221
Q ss_pred ---cCCCCCCCCeeEEEecc-ccccccC------ChHHHHHHHHHhccCCeEEEEEEC
Q 008262 330 ---RRLPYPSQAFDLIHCSR-CRINWTR------DDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 330 ---e~LPfp~~sFDlI~ss~-~l~hw~~------d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+|. .++||+|+|.. ++.|+.. +...+|++++|+|||||+|++...
T Consensus 119 ~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 119 TLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 12333 46899999865 4455532 235799999999999999999863
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.7e-13 Score=129.37 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc---------------------------
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--------------------------- 322 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~--------------------------- 322 (572)
.++.+|||||||+|.++..++.. .|+|+|+|+.|+..++..... .....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45678999999999988777654 799999999999766543322 11100
Q ss_pred ----EEEe----ccccCCCCCCCCeeEEEeccccccccCC---hHHHHHHHHHhccCCeEEEEEEC
Q 008262 323 ----MVAA----FATRRLPYPSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 323 ----~~~~----~d~e~LPfp~~sFDlI~ss~~l~hw~~d---~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.... .+....+++.++||+|+|..+++|...+ ...+++++.|+|||||+|++++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 0000 0122346778999999999998887643 35899999999999999999874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.25 E-value=1.7e-11 Score=120.65 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=72.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
...++|||||||+|.++..|+++ +++++|+ +.++..+.. ...+.+... .+...+.. .+.+ ..||+|++..
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~~~~~~~~ri~~~~~d~~-~~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARR-RFADAGLADRVTVAEGDFF-KPLP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTT-SCCS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHH-HHhhcCCcceeeeeeeecc-cccc-ccchhhhccc
Confidence 45679999999999999999875 7889998 545544433 333444332 33333332 2343 5699999999
Q ss_pred ccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++++|.++. ..+|++++++|||||.|++.+.
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 999994332 4789999999999999999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=1.3e-11 Score=121.01 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
...++|||||||+|.++..|+++ .++++|+ +.++..+... ..+.+.. ..+...|... + ...+||+|+++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~rv~~~~~D~~~-~-~~~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSY-LKDEGLSDRVDVVEGDFFE-P-LPRKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHH-HHHTTCTTTEEEEECCTTS-C-CSSCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHH-HHHhhcccchhhccccchh-h-cccchhheeecc
Confidence 45689999999999999998865 6888898 4466555443 3344433 2344444322 2 235799999999
Q ss_pred ccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+++||.++. ..+|++++|+|||||.|++...
T Consensus 155 vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 155 VLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 988884332 4789999999999999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=9.9e-12 Score=118.83 Aligned_cols=100 Identities=12% Similarity=0.201 Sum_probs=78.5
Q ss_pred CCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEeccc
Q 008262 275 IRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHCSRC 347 (572)
Q Consensus 275 ~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP--fp~~sFDlI~ss~~ 347 (572)
...|||||||+|.++..|+.. .++|+|+++.++..+. +.+.+.++.+ .+...|+..+. ++++++|.|++...
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 457999999999998888765 7999999999886655 4555667664 44455666665 78999999997755
Q ss_pred cccccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
.+|.... ..+|.++.|+|||||.|.+.|
T Consensus 109 -~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6664432 379999999999999999987
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.20 E-value=1e-11 Score=120.87 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 332 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L 332 (572)
..+..|..-+..+ ...++.+|||||||+|.++..|++. .|+|+|+|+.|+..+. +.+..+.....+........
T Consensus 58 klaA~i~~gl~~l-~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~~ni~~i~~d~~~~~ 135 (230)
T d1g8sa_ 58 KLAAAIIKGLKVM-PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAERENIIPILGDANKPQ 135 (230)
T ss_dssp HHHHHHHTTCCCC-CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTCTTEEEEECCTTCGG
T ss_pred HHHHHHHhhHHhC-CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhhcccceEEEeeccCc
Confidence 3344444444432 3467899999999999999888864 6999999999986554 33433332222322222333
Q ss_pred CCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 333 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 333 Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.+..+|++++... +++..+...++.+++|.|||||+++++.
T Consensus 136 ~~~~~~~~v~~i~~~-~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 136 EYANIVEKVDVIYED-VAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp GGTTTCCCEEEEEEC-CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeEEeecc-ccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 456667777665544 4444777899999999999999999984
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.1e-11 Score=122.17 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=78.1
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--------------
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-------------- 321 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~-------------- 321 (572)
++.+.+.+.. ....+.+|||||||+|.+...++.. +|+++|+|+.|+..++.......+..
T Consensus 41 ~~~~~~~f~~--g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 118 (263)
T d2g72a1 41 LRCLAQTFAT--GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 118 (263)
T ss_dssp HHHHHHHHHT--SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcc
Confidence 3445444431 1245789999999999877655443 79999999999876543221111000
Q ss_pred ----------------cEEEeccc------cCCCCCCCCeeEEEeccccccccCCh---HHHHHHHHHhccCCeEEEEEE
Q 008262 322 ----------------AMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 322 ----------------~~~~~~d~------e~LPfp~~sFDlI~ss~~l~hw~~d~---~~~L~ei~RvLKPGG~lv~st 376 (572)
......|. ...++..++||+|+|..++++...+. ..+++++.++|||||+|++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198 (263)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 00111122 12235567899999999988887654 589999999999999999986
Q ss_pred C
Q 008262 377 Q 377 (572)
Q Consensus 377 ~ 377 (572)
.
T Consensus 199 ~ 199 (263)
T d2g72a1 199 A 199 (263)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=3.3e-11 Score=115.56 Aligned_cols=107 Identities=12% Similarity=0.009 Sum_probs=77.1
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR 331 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~ 331 (572)
....+.+.+. .+++.+|||||||+|.++..|++. .|+++|+++.++..+..... ..+..+ .+...|...
T Consensus 63 ~~a~~l~~l~----l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~-~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 63 LMALFMEWVG----LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE-RLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGG
T ss_pred hhHHHHHhhh----ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHh-hhcccccccccCchHH
Confidence 3444555554 367889999999999998887643 69999999988876664443 344444 334445666
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+.+++||+|++..++.+. + .++.+.|||||.+++..
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~-p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDEV-P------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCGGGCCEEEEEECSBBSCC-C------HHHHHHEEEEEEEEEEB
T ss_pred ccccccchhhhhhhccHHHh-H------HHHHHhcCCCcEEEEEE
Confidence 66667899999998775544 2 35678899999998853
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=8e-11 Score=116.70 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=83.5
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc--CCC-cEEEecccc
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER--GAP-AMVAAFATR 330 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r--g~~-~~~~~~d~e 330 (572)
+..|..++. ..++.+|||+|||+|+++..|+.. +|+++|+++.++..+..++.... ... ..+...|..
T Consensus 85 ~s~Ii~~l~----i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~ 160 (264)
T d1i9ga_ 85 AAQIVHEGD----IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 160 (264)
T ss_dssp HHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHHHHHhC----CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc
Confidence 344455554 367899999999999999988764 79999999988876665444322 122 344555777
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..++++++||.|++. . +++..++.++.|+|||||.+++..+
T Consensus 161 ~~~~~~~~fDaV~ld-----l-p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 161 DSELPDGSVDRAVLD-----M-LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GCCCCTTCEEEEEEE-----S-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cccccCCCcceEEEe-----c-CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 788999999999853 3 7778999999999999999998864
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.16 E-value=6.1e-11 Score=113.24 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
....|||||||+|.++..++.. .++|+|+++.++..+. +.+.+.++.+ .+...|+..+. ++++++|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~-~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH-HhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 3457999999999998888765 7999999998886665 4455566654 34455666665 7889999999775
Q ss_pred ccccccCCh--------HHHHHHHHHhccCCeEEEEEE
Q 008262 347 CRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 347 ~l~hw~~d~--------~~~L~ei~RvLKPGG~lv~st 376 (572)
. ..|.... ..+|.++.|+|||||.|.++|
T Consensus 110 P-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 110 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred c-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4 6664432 489999999999999999987
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=8.5e-11 Score=118.40 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCC--CcEEEecccc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATR 330 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~--~~~~~~~d~e 330 (572)
+.|.+.|.+.... .++++|||||||+|.++..+++. +|+++|.++.+.. +. +.+...+. ...+...+.+
T Consensus 21 ~~y~~ai~~~~~~----~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~~~~~ 94 (311)
T d2fyta1 21 ESYRDFIYQNPHI----FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIKGKIE 94 (311)
T ss_dssp HHHHHHHHHCGGG----TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHhcccc----CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEEeeHH
Confidence 3555556554442 35689999999999998888765 7999999997653 22 23333333 2345556788
Q ss_pred CCCCCCCCeeEEEeccccccccCC--hHHHHHHHHHhccCCeEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d--~~~~L~ei~RvLKPGG~lv~s 375 (572)
++++++++||+|+|.....+...+ ...++..+.|.|||||.++-+
T Consensus 95 ~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 95 EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp TSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred HhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 999999999999987554444333 247777789999999999743
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.13 E-value=2.8e-11 Score=115.97 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC---CCeeEEEe
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS---QAFDLIHC 344 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~---~sFDlI~s 344 (572)
..++.+|||+|||+|.++..|++. .|+|+|+|+.|+..+. +.+..++ .......+....+... ..+|+|++
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEe
Confidence 467899999999999888887753 6999999999997665 3455444 2233334444443333 34566554
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
. +.|+ .+...++.+++|+|||||++++..
T Consensus 132 ~--~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 132 D--IAQK-NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp C--CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--ccCh-hhHHHHHHHHHHHhccCCeEEEEE
Confidence 3 3444 566789999999999999999985
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=1.2e-10 Score=118.20 Aligned_cols=98 Identities=15% Similarity=0.220 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
++.+|||||||+|.++..+++. .|+++|.++ ++..+ .+.++..+.. ..+...+.+.+++++++||+|+|..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a-~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMA-KELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHH-HHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 4689999999999998888765 799999997 44333 3444444443 345556788999999999999987554
Q ss_pred cccc--CChHHHHHHHHHhccCCeEEE
Q 008262 349 INWT--RDDGILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 349 ~hw~--~d~~~~L~ei~RvLKPGG~lv 373 (572)
.+.. .....++..+.|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 4332 334688999999999999986
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=1.8e-10 Score=116.54 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~--~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
++++|||||||+|.++..+++. +|+++|.++.+. .+ .+.+...+.. ..+...+.+.++++.++||+|+|..+.
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a-~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YA-VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HH-HHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hh-hhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 4688999999999998888765 699999998543 32 2344444443 345556788999999999999987554
Q ss_pred ccccC--ChHHHHHHHHHhccCCeEEEE
Q 008262 349 INWTR--DDGILLLEVNRMLRAGGYFAW 374 (572)
Q Consensus 349 ~hw~~--d~~~~L~ei~RvLKPGG~lv~ 374 (572)
..... ....++..+.|+|||||.++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 33322 347899999999999999873
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=3.3e-10 Score=111.38 Aligned_cols=99 Identities=9% Similarity=0.127 Sum_probs=74.5
Q ss_pred CCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEec
Q 008262 272 GHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCS 345 (572)
Q Consensus 272 ~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp~~sFDlI~ss 345 (572)
..++.+|||+|||+|.++..|+.. .|+++|+++.++..+..++....+..+ .+...|.... +++++||.|++.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld 161 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD 161 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec
Confidence 367899999999999998888753 799999999888666655444333333 3444454443 567899999964
Q ss_pred cccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 346 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 346 ~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+ .++..++.++.++|||||.|++..+
T Consensus 162 -~-----p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 162 -I-----PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp -C-----SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred -C-----CchHHHHHHHHHhcCCCceEEEEeC
Confidence 2 5667889999999999999998864
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.9e-11 Score=120.07 Aligned_cols=118 Identities=11% Similarity=-0.019 Sum_probs=83.1
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHH------HcC---
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL------ERG--- 319 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~------~rg--- 319 (572)
......+.++.+.+. ..+..+|||||||+|.++..++.. +++|+|+++.++..+..+... ..|
T Consensus 134 e~~~~~~~~~~~~~~----l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~ 209 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIK----MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209 (328)
T ss_dssp CCCHHHHHHHHHHSC----CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHcC----CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccC
Confidence 334455666666665 356789999999999988777643 699999999887665443221 112
Q ss_pred CCcEEEeccccCCCCCCCCe--eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 320 APAMVAAFATRRLPYPSQAF--DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 320 ~~~~~~~~d~e~LPfp~~sF--DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
....+...|...+++.+..| |+|+++ .+.++ ++....|.++.|+|||||.++...
T Consensus 210 ~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~-~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 210 AEYTLERGDFLSEEWRERIANTSVIFVN-NFAFG-PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CceEEEECcccccccccccCcceEEEEc-ceecc-hHHHHHHHHHHHhCCCCcEEEEec
Confidence 23445666777777766555 677765 44555 677899999999999999998753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=7.6e-10 Score=109.62 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEE-eccccC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVA-AFATRR 331 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~-~~d~e~ 331 (572)
+..|..++. ..++.+|||+|||+|.++..|+.. +|+++|+++.++..++.... ..+.. .... ..|. .
T Consensus 92 ~~~Ii~~l~----i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~-~~g~~~~v~~~~~d~-~ 165 (266)
T d1o54a_ 92 SSFIAMMLD----VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDI-S 165 (266)
T ss_dssp HHHHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCG-G
T ss_pred HHHHHHhhC----CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccccCcEEEeccc-c
Confidence 334555554 367899999999999998888753 79999999998877665443 34442 2222 2232 2
Q ss_pred CCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
..+....||.|+. +. +++..+|.++.++|||||.|++..+
T Consensus 166 ~~~~~~~~D~V~~-----d~-p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 166 EGFDEKDVDALFL-----DV-PDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp GCCSCCSEEEEEE-----CC-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccccccceeeeEe-----cC-CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 3466788999874 33 7788999999999999999998864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=5.7e-10 Score=107.75 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=75.2
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc----CC-CcEEEeccc
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER----GA-PAMVAAFAT 329 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r----g~-~~~~~~~d~ 329 (572)
.++.+.|... ..++.+|||||||+|+++..|++. .|+++|+++.++..+...+.+.. +. ...+...|.
T Consensus 64 a~~le~L~~~--l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 64 AYALELLFDQ--LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHTTTT--SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHhhc--cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 3455555311 256789999999999988777643 79999999988876655444321 11 223444566
Q ss_pred cCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
......++.||.|++..+..+. ..++.+.|||||.+++..
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~i-------p~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhhc-------CHHHHhhcCCCcEEEEEE
Confidence 6667777899999998765443 235788999999999864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.97 E-value=3.9e-10 Score=109.25 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccc---c
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---R 330 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~---e 330 (572)
...|..-+..+ ...++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+..++... ....+. +
T Consensus 59 aa~i~~~l~~l-~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~~~~-~i~~d~~~~~ 135 (227)
T d1g8aa_ 59 GAAIMNGLKNF-PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERRNIV-PILGDATKPE 135 (227)
T ss_dssp HHHHHTTCCCC-CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCTTEE-EEECCTTCGG
T ss_pred HHHHHcccccc-ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcCCce-EEEEECCCcc
Confidence 33444444432 2467899999999999999998864 7999999999886654 3343333222 222222 3
Q ss_pred CCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 331 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 331 ~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+.....+|+|++. +.|. .+...++.++.+.|||||+++++.
T Consensus 136 ~~~~~~~~vD~i~~d--~~~~-~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 136 EYRALVPKVDVIFED--VAQP-TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GGTTTCCCEEEEEEC--CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccceEEEEEE--cccc-chHHHHHHHHHHhcccCCeEEEEE
Confidence 344455789999874 2333 556789999999999999999984
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.83 E-value=4e-09 Score=101.80 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=69.0
Q ss_pred HHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCC
Q 008262 261 QIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQA 338 (572)
Q Consensus 261 ~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~s 338 (572)
.+.+.+. ..++.+|||||||+|+++..|+.. +|+++|+++..+..++.... ......+...|...-....+.
T Consensus 61 ~ml~~L~----l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 61 FMLDELD----LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHTT----CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhh----hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHh--cccccccccCchhhcchhhhh
Confidence 3455554 357789999999999999887765 89999999977755543222 222333444443332234578
Q ss_pred eeEEEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
||.|++..+..+. ...+.+.|||||.|++-
T Consensus 135 fD~Iiv~~a~~~i-------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTL-------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSC-------CHHHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhh-------hHHHHHhcCCCCEEEEE
Confidence 9999988765443 13456789999999885
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=9.7e-09 Score=104.29 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=69.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHc---------C-C-CcEEEeccccCCC--C
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER---------G-A-PAMVAAFATRRLP--Y 334 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~r---------g-~-~~~~~~~d~e~LP--f 334 (572)
.++.+|||+|||+|.++..|+.. .|+++|+++.++..++.++.... + . ...+...|..... +
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 57899999999999999888764 69999999988877665544321 1 1 1223334444433 4
Q ss_pred CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 335 p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++.+||.|+.. + +++..++.++.++|||||.|++..+
T Consensus 177 ~~~~fD~V~LD-~-----p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 177 KSLTFDAVALD-M-----LNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp ----EEEEEEC-S-----SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCcceEeec-C-----cCHHHHHHHHHHhccCCCEEEEEeC
Confidence 56789999863 2 4556789999999999999998753
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=3.5e-09 Score=110.57 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH------cCC---
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE------RGA--- 320 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~------rg~--- 320 (572)
..-..+.++.+.+. .+++.++||||||+|.++..++.. +|+|+|+++.++..+..+.... .+.
T Consensus 200 l~~~~i~~Il~~l~----Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQ----LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp BCHHHHHHHHHHTT----CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred CCHHHHHHHHHHhC----CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 33445666666665 367789999999999988887754 6999999999887665443321 111
Q ss_pred CcEE-EeccccCCCCC---CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 321 PAMV-AAFATRRLPYP---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 321 ~~~~-~~~d~e~LPfp---~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
...+ ...+....++. -..+|+|+++ ..++. ++....|.++.|.|||||.++.+.
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~in-n~~f~-~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVN-NFLFD-EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEEC-CTTCC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cceeeeeechhhccccccccccceEEEEe-cccCc-hHHHHHHHHHHHhcCCCcEEEEec
Confidence 1111 11111111111 1246888875 33444 677899999999999999998763
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=4.3e-08 Score=97.20 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc-EEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d 328 (572)
..+..++.....+. ....+|||+|||+|..+..++.. .|+++|+|+..+..++. .+...++.. .+...|
T Consensus 93 eTE~lv~~~l~~~~-----~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~-Na~~~~~~~v~~~~~d 166 (274)
T d2b3ta1 93 DTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSD 166 (274)
T ss_dssp THHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCS
T ss_pred chhhhhhhHhhhhc-----ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHH-HHHHhCcccceeeecc
Confidence 34445555555443 34578999999999888777653 89999999988866664 444555543 344434
Q ss_pred ccCCCCCCCCeeEEEecccccccc------------C------------ChHHHHHHHHHhccCCeEEEEEE
Q 008262 329 TRRLPYPSQAFDLIHCSRCRINWT------------R------------DDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~e~LPfp~~sFDlI~ss~~l~hw~------------~------------d~~~~L~ei~RvLKPGG~lv~st 376 (572)
... +++++.||+|+|+.-.+.-. + ....++.++.+.|+|||.+++-.
T Consensus 167 ~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 167 WFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp TTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 321 35567999999986543210 0 01258889999999999999973
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.63 E-value=6.7e-08 Score=97.80 Aligned_cols=129 Identities=12% Similarity=0.038 Sum_probs=83.9
Q ss_pred ccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--EEEec
Q 008262 253 HGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAF 327 (572)
Q Consensus 253 ~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~ 327 (572)
..+......+.+.+. ++.+|||+|||+|.++..++.. +|+++|+++..+..+.. .+...|+.. .+...
T Consensus 130 lDqr~~r~~~~~~~~------~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~-N~~~ngl~~~~~~~~~ 202 (324)
T d2as0a2 130 LDQRENRLALEKWVQ------PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVG 202 (324)
T ss_dssp STTHHHHHHHGGGCC------TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEES
T ss_pred cchhhHHHHHHhhcC------CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHH-HHHHcCCCccceeeec
Confidence 344444445544443 4689999999999999887754 79999999988866554 344456532 34444
Q ss_pred ccc----CCCCCCCCeeEEEeccccccccC--------ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 328 ATR----RLPYPSQAFDLIHCSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 328 d~e----~LPfp~~sFDlI~ss~~l~hw~~--------d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
|+. .++...+.||+|++......-.. +...++..+.++|||||+|++++....-+.+++.+
T Consensus 203 d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~ 275 (324)
T d2as0a2 203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKD 275 (324)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred hhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHH
Confidence 432 23345679999998653221111 12357888999999999999987544444454443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.62 E-value=3.3e-08 Score=94.70 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCC
Q 008262 260 DQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYP 335 (572)
Q Consensus 260 ~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~LPfp 335 (572)
.++.+.+. ..+..+|||||||+|+.++.|+.. .|+++|..+..+..+.. ...+.+..+ .+...|.......
T Consensus 68 a~ml~~L~----l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~-~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 68 AIMLEIAN----LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKR-NLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHT----CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHhhc----cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHH-HHHHcCCceeEEEECccccCCcc
Confidence 34445554 356789999999999988877643 69999999876655543 344455544 4444454444445
Q ss_pred CCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 336 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 336 ~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.+.||.|++..+..+. +.. +.+.|||||.+++-.
T Consensus 143 ~~pfD~Iiv~~a~~~i---p~~----l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKI---PEP----LIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCEEEEEECSBBSSC---CHH----HHHTEEEEEEEEEEE
T ss_pred cCcceeEEeecccccC---CHH----HHHhcCCCCEEEEEE
Confidence 6889999988664433 223 456799999998763
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.61 E-value=4.4e-08 Score=98.97 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC----CCCCCCCeeEEEecc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCSR 346 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~----LPfp~~sFDlI~ss~ 346 (572)
.+++|||++||+|.++.+++.. +|+++|+++.++..+.. .+...++.. .+...|..+ ++...++||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHH-HHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 4589999999999999888644 89999999998876664 444566643 344444322 344567999999865
Q ss_pred ccccccC--------ChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 347 CRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 347 ~l~hw~~--------d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
-...-.. +...++..+.++|||||.|++++....-+..++.+
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~ 273 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYA 273 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHH
Confidence 3222111 12367888999999999999987433344444443
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.59 E-value=2.4e-08 Score=93.79 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCCEEEEECCCCch----hHHHhccC--------CeEEEeCCccchHHHHHHH------------HHHc-----CC--C
Q 008262 273 HHIRVVMDAGCGVAS----FGAYLLPR--------NVITMSIAPKDVHENQIQF------------ALER-----GA--P 321 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~----~a~~L~~~--------~V~gvDiSp~dl~~a~~~~------------A~~r-----g~--~ 321 (572)
...-+|+++|||+|. ++..+.+. +|+|+|+++..+..+.... ...+ +. .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345689999999994 44444331 5999999998776554210 0000 00 0
Q ss_pred c------------EEEecc-ccCCCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEE
Q 008262 322 A------------MVAAFA-TRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 322 ~------------~~~~~d-~e~LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~s 375 (572)
. .+...+ ....+.+.+.||+|+|.++++.+.++. ..++..+++.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 011111 111223457899999999988874443 58999999999999999876
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.58 E-value=6.9e-08 Score=92.82 Aligned_cols=97 Identities=13% Similarity=0.201 Sum_probs=66.8
Q ss_pred CCCCEEEEECCCCchhHHHhccC----------CeEEEeCCccchHHHHHHHHHH----cCC-CcEEEeccccCCCCCCC
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALE----RGA-PAMVAAFATRRLPYPSQ 337 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----------~V~gvDiSp~dl~~a~~~~A~~----rg~-~~~~~~~d~e~LPfp~~ 337 (572)
.+..+|||||||+|+++..|+.. +|+++|..+..+..++...... .+. ...+...|......+.+
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 56789999999999988777643 5999999998776554432211 122 23344455555445567
Q ss_pred CeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 338 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 338 sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.||.|++..+..+. + ..+.+.|||||.+++-.
T Consensus 159 ~fD~Iiv~~a~~~~-p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 159 PYNAIHVGAAAPDT-P------TELINQLASGGRLIVPV 190 (223)
T ss_dssp SEEEEEECSCBSSC-C------HHHHHTEEEEEEEEEEE
T ss_pred ceeeEEEEeechhc-h------HHHHHhcCCCcEEEEEE
Confidence 89999998664433 2 24578999999998863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.58 E-value=9.3e-08 Score=93.97 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=83.0
Q ss_pred eeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHc
Q 008262 242 FKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER 318 (572)
Q Consensus 242 ~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~r 318 (572)
+.+.-..+.|..+......++.+.+. ++.+|||+|||+|.++..++.+ +|+++|+++..+..+. +.++..
T Consensus 81 ~~~d~~~~~f~~~~~~er~ri~~~~~------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~-~N~~~n 153 (260)
T d2frna1 81 YKLDVAKIMFSPANVKERVRMAKVAK------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLN 153 (260)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHCC------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHT
T ss_pred EEeccccccEecCCHHHHHHHHhhcC------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH-HHHHHh
Confidence 33333344555554444555666654 5689999999999998877644 7999999998775444 344445
Q ss_pred CCCc--EEEeccccCCCCCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 319 GAPA--MVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 319 g~~~--~~~~~d~e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.. .+...|+..++. .+.||.|++... .....++.++.++|++||++.+..
T Consensus 154 ~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 154 KVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp TCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCceEEEEEcchHHhcc-CCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEEe
Confidence 5543 344556666653 578999997532 233568888999999999997654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=1.2e-07 Score=87.11 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL 316 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~ 316 (572)
|.++.+|.+ + +...+...+.|...+... ...+.+|||+|||+|.++...+.+ +|+++|.++.++..+..+ ++
T Consensus 11 g~~l~~~~~-~--Rpt~~~v~e~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N-~~ 84 (171)
T d1ws6a1 11 GVALKVPAS-A--RPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VR 84 (171)
T ss_dssp TCEECCCTT-C--CCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HH
T ss_pred CCEeCCCCC-C--CCCcHHHHHHHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH-HH
Confidence 444555543 2 233344455555555422 235679999999999999877666 889999999887655543 44
Q ss_pred HcCCCcEEEeccccC----CCCCCCCeeEEEeccccccccCChHHHHHHH--HHhccCCeEEEEEE
Q 008262 317 ERGAPAMVAAFATRR----LPYPSQAFDLIHCSRCRINWTRDDGILLLEV--NRMLRAGGYFAWAA 376 (572)
Q Consensus 317 ~rg~~~~~~~~d~e~----LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei--~RvLKPGG~lv~st 376 (572)
..+....+...+... ......+||+|++.... + .+....+.++ ...|+|||++++..
T Consensus 85 ~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY-~--~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 85 RTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY-A--MDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT-T--SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhccccceeeeehhcccccccccCCccceeEEcccc-c--cCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 455554444333221 22455789999987542 2 2334445554 35799999999875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.43 E-value=4.7e-07 Score=91.32 Aligned_cols=114 Identities=10% Similarity=0.051 Sum_probs=75.5
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCC---cEEEecccc-C---CCCCCCCeeEEE
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATR-R---LPYPSQAFDLIH 343 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~e-~---LPfp~~sFDlI~ 343 (572)
++++|||+.||+|.++..++.. .|+++|+++..+..+..+.. ..++. ..+...|+. . +.-..+.||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 4689999999999998876543 79999999988866655443 33432 234444432 1 222356899999
Q ss_pred eccccc--------cccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHH
Q 008262 344 CSRCRI--------NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 388 (572)
Q Consensus 344 ss~~l~--------hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~ 388 (572)
+..-.. ....+...++..+.++|+|||+|++++....-+..++..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~ 275 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKK 275 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHH
Confidence 864322 111223468889999999999999997533444444433
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.41 E-value=2.4e-07 Score=90.13 Aligned_cols=105 Identities=11% Similarity=0.102 Sum_probs=70.8
Q ss_pred HHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC-C-CcEEEeccccC
Q 008262 258 YLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-A-PAMVAAFATRR 331 (572)
Q Consensus 258 ~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg-~-~~~~~~~d~e~ 331 (572)
..+.+.+.+.. -...++|||||||+|.++..++++ +++.+|+.. . +.+.. . ...+...|..
T Consensus 68 ~~~~l~~~~~~---f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v--------i~~~~~~~ri~~~~gd~~- 134 (244)
T d1fp1d2 68 EMKRMLEIYTG---FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-V--------IENAPPLSGIEHVGGDMF- 134 (244)
T ss_dssp HHHHHHHHCCT---TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H--------HTTCCCCTTEEEEECCTT-
T ss_pred HHHHHHHhccc---ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-h--------hhccCCCCCeEEecCCcc-
Confidence 34445544442 145689999999999999999876 677777632 1 11111 1 1233334432
Q ss_pred CCCCCCCeeEEEeccccccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-+.| ..|++++..++++|.++. ..+|+++++.|+|||.+++.+.
T Consensus 135 ~~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 135 ASVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp TCCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 2333 459999999999995433 4899999999999999999864
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=9.9e-07 Score=83.07 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=48.5
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+++|||+|||+|.++..++.. +|+++|+++..+ +.|+++.....+...|...++ +.||+|+++.-+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-----~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-----HHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 5689999999999887665543 699999998765 444444333445556666654 689999998653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.34 E-value=1.5e-07 Score=84.66 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccC-CCCCCCCeeEEEeccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
.+.+|||+|||+|.++...+.+ +|+++|.++..+...+. .+...+... .+...|+.. +....++||+|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~-n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh-hhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5689999999999999766654 79999999987754443 333344432 334444433 3455789999998643
Q ss_pred cccccCChHHHHHHHH--HhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVN--RMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~--RvLKPGG~lv~st 376 (572)
.. . ......+..+. +.|+|||.+++..
T Consensus 93 y~-~-~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA-K-ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH-H-HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc-c-chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11 0 11235555543 5799999999875
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.34 E-value=4.5e-07 Score=87.80 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
...++|||||||+|.++..++++ +++++|+... + +.+.. .....+...|... +.|. .|+++...++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhccc-CCceEEecccccc-cCCC--cceEEEEEEe
Confidence 44689999999999999999876 7888898652 2 11111 1122333444321 3343 4666777788
Q ss_pred ccccCCh-HHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.|..+. ..+|++++++|+|||.+++...
T Consensus 150 h~~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 150 HDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp TTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 8884333 5899999999999999999853
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.22 E-value=1.3e-06 Score=84.75 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEeccccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
...+|||||||+|.++..++++ +++..|+.. . ++.+... ....+...|... +.+ .+|++++..+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v-----i~~~~~~-~rv~~~~gD~f~-~~p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-V-----VENLSGS-NNLTYVGGDMFT-SIP--NADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H-----HTTCCCB-TTEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-H-----HHhCccc-CceEEEecCccc-CCC--CCcEEEEEeecc
Confidence 4578999999999999988876 688888742 1 1111111 123344445432 333 579999999999
Q ss_pred cccCCh-HHHHHHHHHhccCC---eEEEEEEC
Q 008262 350 NWTRDD-GILLLEVNRMLRAG---GYFAWAAQ 377 (572)
Q Consensus 350 hw~~d~-~~~L~ei~RvLKPG---G~lv~st~ 377 (572)
+|.++. ..+|+++++.|+|| |.+++...
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 995443 48999999999999 77877754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=3.1e-06 Score=79.53 Aligned_cols=71 Identities=17% Similarity=0.042 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
.+.+|||+|||+|.++..++.+ .|+++|+++..+..+.. .+...+....+...|...+ ++.||+|+++...
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~-N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHH-HHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 5689999999999988766554 79999999987755543 3344555555655555554 4679999998764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.20 E-value=3e-06 Score=84.97 Aligned_cols=118 Identities=9% Similarity=-0.002 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCC---cEEEeccc
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFAT 329 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~---~~~~~~d~ 329 (572)
+....+.+.+.+... .++.+|||++||+|.++..++.. +|++||.|...+..+..+... .++. ..+...|+
T Consensus 116 qr~nr~~~~~~~~~~---~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~ 191 (309)
T d2igta1 116 QIVHWEWLKNAVETA---DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDA 191 (309)
T ss_dssp GHHHHHHHHHHHHHS---SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCH
T ss_pred hhHHHHHHHHHHhhc---cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCH
Confidence 333344444444422 35689999999999999888765 899999999988766655444 3332 23444443
Q ss_pred cC----CCCCCCCeeEEEecccccc-------c--cCChHHHHHHHHHhccCCeEEEEEE
Q 008262 330 RR----LPYPSQAFDLIHCSRCRIN-------W--TRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 330 e~----LPfp~~sFDlI~ss~~l~h-------w--~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
.. +....+.||+|++..-... | ..+...++..+.++|+|||.+++.+
T Consensus 192 ~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 22 1123578999998543221 1 1122456777889999999766554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=2.4e-06 Score=79.02 Aligned_cols=132 Identities=10% Similarity=0.020 Sum_probs=81.1
Q ss_pred cCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHH
Q 008262 238 EKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQF 314 (572)
Q Consensus 238 ~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~ 314 (572)
.|..+.+|.+.. .+...+...+.|...|... -...+|||++||+|.++...+.+ .|+.+|.+...+.....+.
T Consensus 11 kg~~l~~~~~~~-~RPt~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~ 86 (183)
T d2fpoa1 11 RGRKLPVPDSPG-LRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNL 86 (183)
T ss_dssp TTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHH
T ss_pred CCCEecCCCCCC-cCcCcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHH
Confidence 345556665422 2334455556666666432 24578999999999999877765 7999999998776555443
Q ss_pred HHHcCCCc-EEEeccc-cCCCCCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEE
Q 008262 315 ALERGAPA-MVAAFAT-RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 376 (572)
Q Consensus 315 A~~rg~~~-~~~~~d~-e~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st 376 (572)
. ..+... .+...|. ..+......||+|++..-.. - .....++..+.+ .|+++|.+++..
T Consensus 87 ~-~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~-~-~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 87 A-TLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-R-GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp H-HTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-T-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred h-hccccceeeeeecccccccccccccCEEEEcCccc-c-chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3 334433 2333332 23344567899999875421 1 233566666654 699999999874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.18 E-value=1.5e-06 Score=82.70 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccc-cCCC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~-e~LP-----fp~~sFD 340 (572)
++++|||||||+|..+..|+.. +|+++|+++.+...++..+ ...|... .+...+. +-++ +..+.||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~-~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHH-HHcCCCccceeeeccccccccchhhcccccccc
Confidence 3589999999999988888753 7999999998776555333 3345432 3333332 2222 4457899
Q ss_pred EEEeccccccccCCh--HHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~--~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+... +.... ...+.++.++|||||.+++..
T Consensus 135 ~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeecc----cccccccHHHHHHHhCccCCCcEEEEeC
Confidence 999752 22222 346778889999999987754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2e-06 Score=82.09 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccc-cCCC-----CCCCCee
Q 008262 274 HIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP-----YPSQAFD 340 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~-e~LP-----fp~~sFD 340 (572)
+.++|||||||+|..+..+++. +|+++|.++.....++. ...+.|... .+...++ +.++ ...++||
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~-~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHH-HHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 4689999999999988888764 79999999976655543 333344433 2333332 2222 2467899
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+.. +........+..+.+.|+|||.+++..
T Consensus 138 ~ifiD----~dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 138 VAVVD----ADKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEEC----SCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEe----CCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99964 333455788999999999999999975
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=1.3e-06 Score=81.95 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=75.5
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-- 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-- 332 (572)
++++.+.+. ..+...+||++||+|..+..++++ .|+|+|.++.++..++.... ..+....+...+...+
T Consensus 12 l~evi~~l~----~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~-~~~~r~~~~~~~f~~~~~ 86 (192)
T d1m6ya2 12 VREVIEFLK----PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSYREADF 86 (192)
T ss_dssp HHHHHHHHC----CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCGGGHHH
T ss_pred HHHHHHhhC----CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhc-cccccccchhHHHhhHHH
Confidence 555666665 356789999999999998888764 79999999988855443222 1222333333333332
Q ss_pred ---CCCCCCeeEEEecccc--cccc------CChHHHHHHHHHhccCCeEEEEEEC
Q 008262 333 ---PYPSQAFDLIHCSRCR--INWT------RDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 ---Pfp~~sFDlI~ss~~l--~hw~------~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+..++||.|+..... .|+. ......|..+.++|+|||.+++.++
T Consensus 87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 87 LLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 2445789999854321 2221 1224789999999999999998874
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.06 E-value=4.6e-06 Score=83.40 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCchhHHHhcc----C-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP----R-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ 343 (572)
.+..+|||.|||+|.+...+.+ . .++|+|+++.++..+...... .+........+... ..+...||+|+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~-~~~~~~~~~~d~~~-~~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLA-NLLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTS-CCCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH-hhhhhhhhcccccc-ccccccccccc
Confidence 4567899999999998877643 1 699999999877655544333 33444343333222 23457899999
Q ss_pred eccccccccCC-----------------hHHHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSRCRINWTRD-----------------DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~~l~hw~~d-----------------~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
++.-......+ ...++..+.+.|+|||++++..+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 98754322111 01468889999999999888753
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=2.8e-05 Score=75.27 Aligned_cols=93 Identities=10% Similarity=0.163 Sum_probs=56.7
Q ss_pred HHHHHHHHhccccc-cCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEE--Eeccc
Q 008262 257 QYLDQIAKMVPDIT-WGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFAT 329 (572)
Q Consensus 257 ~~i~~L~~~L~~i~-~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~--~~~d~ 329 (572)
.|...+.+++.... ...+..++||||||+|..+..|+.+ +++|+|+++..+..++.... ..++...+ ...+.
T Consensus 43 ~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~-~n~l~~~~~~~~~~~ 121 (250)
T d2h00a1 43 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE-QNNLSDLIKVVKVPQ 121 (250)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH-HhCCCcceeeeeecc
Confidence 44555555443211 1234568999999999877776654 89999999988876664443 34443322 21111
Q ss_pred -cCC-----CCCCCCeeEEEecccccc
Q 008262 330 -RRL-----PYPSQAFDLIHCSRCRIN 350 (572)
Q Consensus 330 -e~L-----Pfp~~sFDlI~ss~~l~h 350 (572)
..+ ...++.||+|+|+.-.+.
T Consensus 122 ~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 122 KTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred HHhhhhhhhhcccCceeEEEecCcccc
Confidence 111 134568999999976554
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.02 E-value=9e-06 Score=75.13 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=83.0
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFA 315 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A 315 (572)
|..+.+|.+. ..+...+...+.+...|... ..+.+|||++||+|.++...+.+ .|+.+|.+...+.....+..
T Consensus 10 g~~l~~~~~~-~~RPt~~~vrealFn~l~~~---~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~ 85 (182)
T d2fhpa1 10 GRRLKALDGD-NTRPTTDKVKESIFNMIGPY---FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA 85 (182)
T ss_dssp TCBCCCCCCC-SSCCCCHHHHHHHHHHHCSC---CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCEecCCCCC-CcCcCcHHHHHHHHHHHHHh---cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhh
Confidence 3344444432 22445566667777777632 35689999999999999987776 79999999877655443333
Q ss_pred HHcCCC--cEEEeccccC-C---CCCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEE
Q 008262 316 LERGAP--AMVAAFATRR-L---PYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 376 (572)
Q Consensus 316 ~~rg~~--~~~~~~d~e~-L---Pfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st 376 (572)
..+.. ..+...|+.. + .-....||+|++..-. .. .+....|..+.. .|+++|++++..
T Consensus 86 -~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY-~~-~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 86 -ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-AK-QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp -HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-GG-CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -hhhcccccccccccchhhhhhhcccCCCcceEEechhh-hh-hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 23332 2334444322 2 2235689999987541 11 344677777754 699999998864
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.92 E-value=1.8e-05 Score=77.79 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCc--EEEecc
Q 008262 254 GADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA 328 (572)
Q Consensus 254 g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d 328 (572)
..+..++.+.+.+.. ....++||+|||+|..+..++.. +|+++|+|+..+.-++. .++..+... .+...+
T Consensus 94 eTE~lv~~~~~~~~~----~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~-Na~~~~~~~~~~i~~~~ 168 (271)
T d1nv8a_ 94 ETEELVELALELIRK----YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGE 168 (271)
T ss_dssp THHHHHHHHHHHHHH----HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESS
T ss_pred hhhhhhhhhhhhhcc----ccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHH-HHHHcCCCceeEEeecc
Confidence 445566666665553 24568999999999776666543 79999999987765554 344455543 222222
Q ss_pred c-cCCCCCCCCeeEEEecccccccc------------------CChHHHHHH-HHHhccCCeEEEEEECCCCCCHH
Q 008262 329 T-RRLPYPSQAFDLIHCSRCRINWT------------------RDDGILLLE-VNRMLRAGGYFAWAAQPVYKHEE 384 (572)
Q Consensus 329 ~-e~LPfp~~sFDlI~ss~~l~hw~------------------~d~~~~L~e-i~RvLKPGG~lv~st~P~~~tl~ 384 (572)
. +.++...+.||+|+|+.-.+.-. .|.-.++++ +.+.|+|||++++-. ++...+
T Consensus 169 ~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei--g~~Q~~ 242 (271)
T d1nv8a_ 169 FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI--GEDQVE 242 (271)
T ss_dssp TTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC--CTTCHH
T ss_pred cccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE--CHHHHH
Confidence 2 22333347899999986422110 111122222 567899999998874 444433
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.91 E-value=2.2e-05 Score=72.94 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=69.6
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR 331 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~ 331 (572)
..++.|.+++. ..++.+|||.|||+|.|+..+.++ .++|+|+.+..+.. ...+.+...+...
T Consensus 6 ~i~~~m~~l~~----~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~ 72 (223)
T d2ih2a1 6 EVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLL 72 (223)
T ss_dssp HHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGG
T ss_pred HHHHHHHHhcC----CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhc
Confidence 34556666665 346689999999999998777643 59999998864311 1122333333322
Q ss_pred CCCCCCCeeEEEeccccccccC---------------------------Ch-HHHHHHHHHhccCCeEEEEEEC
Q 008262 332 LPYPSQAFDLIHCSRCRINWTR---------------------------DD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~---------------------------d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ....||+|+++........ +. ..++..+.+.|++||++++..+
T Consensus 73 ~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 73 WE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 22 3578999998865432110 01 2557788999999999988864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.85 E-value=1.7e-05 Score=78.09 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHHHH----------cCCCcEEEeccccCCCCCCCCe
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE----------RGAPAMVAAFATRRLPYPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~----------rg~~~~~~~~d~e~LPfp~~sF 339 (572)
.++++||.||+|.|..+..++.. +|+.+|+++..+..+..-+... ......+...|....--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 56789999999999999888766 6899999997764433211000 1122233333432111125789
Q ss_pred eEEEeccccccccCCh----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHh
Q 008262 340 DLIHCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~ 395 (572)
|+|++.. ........ ..+++.+.+.|+|||.++..........+.+......+..
T Consensus 151 DvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~ 209 (276)
T d1mjfa_ 151 DVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKK 209 (276)
T ss_dssp EEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHH
T ss_pred CEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHh
Confidence 9999753 23332211 4789999999999999988642223344444444444443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.83 E-value=1.6e-05 Score=76.10 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEecc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA 328 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d 328 (572)
.+++..|.+.. ++++|||||+++|..+..|++. +|+++|.++.....+.. ...+.|... .+...+
T Consensus 48 g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~-~~~~~g~~~~i~~~~g~ 119 (227)
T d1susa1 48 GQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP-VIKKAGVDHKIDFREGP 119 (227)
T ss_dssp HHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH-HHHHTTCGGGEEEEESC
T ss_pred HHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHH-HHHHhccccceeeeehH
Confidence 34555555444 3589999999999888777642 89999999976644443 333445432 222222
Q ss_pred c-cCCC------CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 329 T-RRLP------YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 329 ~-e~LP------fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+ +.|+ ...++||+|+.. ++.......+..+.+.|+|||.+++..
T Consensus 120 a~~~L~~l~~~~~~~~~fD~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 120 ALPVLDEMIKDEKNHGSYDFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp HHHHHHHHHHCGGGTTCBSEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred HHHHHHHHHhccccCCceeEEEec----cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 2 2222 135689999964 344556789999999999999999974
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.69 E-value=9.5e-05 Score=73.29 Aligned_cols=122 Identities=10% Similarity=0.043 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc----CCCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
..+++||-||.|.|..++.+++. +|+++|+++..+..+..-+.... .....+...|. +-+.-.++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 46789999999999999998875 68999999987754443222211 12223333332 22333457899999
Q ss_pred eccccccccCC-----hHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHh
Q 008262 344 CSRCRINWTRD-----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395 (572)
Q Consensus 344 ss~~l~hw~~d-----~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~ 395 (572)
+... ..+... ...+++.+.+.|+|||.++..........+.+......+..
T Consensus 168 ~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~ 223 (295)
T d1inla_ 168 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISK 223 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHH
T ss_pred EcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHh
Confidence 7532 332111 25899999999999999998753223344444444444433
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=4e-05 Score=76.66 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=68.1
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH-c----CCCcEEEeccc-cCCCCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R----GAPAMVAAFAT-RRLPYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~-r----g~~~~~~~~d~-e~LPfp~~sFDlI 342 (572)
..+++||.||.|.|..+..++.. +|+++|+++..+..+...+... . .....+...|. +-+.-.++.||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 46789999999999999888764 7999999998775444333221 1 12223333333 2222235789999
Q ss_pred EeccccccccCC-------hHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRD-------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d-------~~~~L~ei~RvLKPGG~lv~st 376 (572)
++.. ...+..+ ...+++.+.+.|+|||.++...
T Consensus 156 i~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9653 2323211 1478999999999999998864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.00014 Score=66.77 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=66.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----CeEEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvDiSp~dl~~a~~~~A~~rg~~-~~~~~~d~e~L 332 (572)
+.+|.+...- -.+..+||||||+.|.|+.++.+. .|+++|+.+..- ++ ..+...+....
T Consensus 10 L~EI~~k~~l---~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~------------i~~~~~~~~d~~~~ 74 (180)
T d1ej0a_ 10 LDEIQQSDKL---FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP------------IVGVDFLQGDFRDE 74 (180)
T ss_dssp HHHHHHHHCC---CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC------------CTTEEEEESCTTSH
T ss_pred HHHHHHHhCc---cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccc------------cCCceEeecccccc
Confidence 4445444432 256789999999999999988764 699999887421 22 22333332211
Q ss_pred --------CCCCCCeeEEEeccccccccCCh-----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 333 --------PYPSQAFDLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 --------Pfp~~sFDlI~ss~~l~hw~~d~-----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
-...+.||+|+|-.+ .....+. ...+.-+.++||+||.|++-.+
T Consensus 75 ~~~~~~~~~~~~~~~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 75 LVMKALLERVGDSKVQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhhhccCcceeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 123567999998754 3322222 1556667899999999999976
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.0002 Score=67.33 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=70.6
Q ss_pred CCEEEEECCCCch----hHHHhccCCeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEeccccc
Q 008262 275 IRVVMDAGCGVAS----FGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 349 (572)
Q Consensus 275 ~~~VLDIGCGtG~----~a~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LPfp~~sFDlI~ss~~l~ 349 (572)
..++||+|+|.|. ++....+.+++.+|-...-+ ....+.+.+.++.+. +.....+.+. ...+||+|+|..+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~-~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV-RFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHH-HHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 4689999999994 33333344899999876533 122244556677543 3333455554 3568999998755
Q ss_pred cccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHH
Q 008262 350 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 387 (572)
Q Consensus 350 hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~ 387 (572)
.....++.-+.+.+++||.+++.- +....+|+.
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~K--G~~~~eEl~ 174 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYALK--GQMPEDEIA 174 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE--SSCCHHHHH
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEEC--CCCHHHHHH
Confidence 566889999999999999999985 555555543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.61 E-value=0.00038 Score=66.82 Aligned_cols=130 Identities=11% Similarity=0.102 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcccccc--CCCCCEEEEECCCCchhH----HHhccCCeEEEeCCccchHHHHHHHHHHcCCCcEEE-ec
Q 008262 255 ADQYLDQIAKMVPDITW--GHHIRVVMDAGCGVASFG----AYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVA-AF 327 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~--~~~~~~VLDIGCGtG~~a----~~L~~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~ 327 (572)
.+.+.+++.+.+.-+.. .....+++|||+|.|.=+ ..+.+.+++-+|-+..-. ....+...+.++.+... ..
T Consensus 49 ~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~-~FL~~v~~~L~L~n~~i~~~ 127 (239)
T d1xdza_ 49 KEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI-TFLEKLSEALQLENTTFCHD 127 (239)
T ss_dssp HHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHHHHTCSSEEEEES
T ss_pred HHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH-HHHHHHHHHhCCCCcEEEee
Confidence 34445556554432211 124578999999999433 333344888898876532 11223445567765433 33
Q ss_pred cccCCCC---CCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHH
Q 008262 328 ATRRLPY---PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 392 (572)
Q Consensus 328 d~e~LPf---p~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~ 392 (572)
.+|.+.. ..++||+|+|..+ .....++.-+...|++||.+++.- +....+|+.++-..
T Consensus 128 R~E~~~~~~~~~~~~D~v~sRAv-----a~l~~ll~~~~~~l~~~g~~i~~K--G~~~~~El~~a~~~ 188 (239)
T d1xdza_ 128 RAETFGQRKDVRESYDIVTARAV-----ARLSVLSELCLPLVKKNGLFVALK--AASAEEELNAGKKA 188 (239)
T ss_dssp CHHHHTTCTTTTTCEEEEEEECC-----SCHHHHHHHHGGGEEEEEEEEEEE--CC-CHHHHHHHHHH
T ss_pred hhhhccccccccccceEEEEhhh-----hCHHHHHHHHhhhcccCCEEEEEC--CCChHHHHHHHHHH
Confidence 3444432 2368999998765 667899999999999999999885 56667777665433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.60 E-value=0.0002 Score=70.18 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=69.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcC----CCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg----~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
.++++||-||-|.|..++.+++. +|+.+|+++..+..+..-+....+ ....+...|. +-+--.++.||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 46789999999999999998875 789999999776544432222111 1223333332 22333467899999
Q ss_pred eccccccccCC----hHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st 376 (572)
.... ...... ...+++.+.++|+|||.++...
T Consensus 154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 7632 332221 2489999999999999999875
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=0.0002 Score=70.66 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHc----CCCcEEEeccc-cCC-CCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFAT-RRL-PYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~r----g~~~~~~~~d~-e~L-Pfp~~sFDlI 342 (572)
.++++||-||-|.|..++.+++. +|+.+|+++..+..+..-+.... .....+...|. +-+ ...++.||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 46789999999999999998876 68999999977654433221111 22223333332 223 2345689999
Q ss_pred EeccccccccCCh----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHHHh
Q 008262 343 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 395 (572)
Q Consensus 343 ~ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~e~ 395 (572)
+.... ....... ..+++.++++|+|||.++..........+.+......+..
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~ 214 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCRE 214 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhh
Confidence 97532 3221111 4799999999999999999853223344444444444433
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00012 Score=72.24 Aligned_cols=120 Identities=12% Similarity=0.067 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH----cCCCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~----rg~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
..+++||-||.|.|..++.+++. +|+.+|+.+..+..++.-+... ......+...|. +-+.-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 46789999999999999999875 7899999997775444322211 112233333332 22223457899999
Q ss_pred eccccccccCCh----HHHHHHHHHhccCCeEEEEEECCCCCCHHHHHHHHHHH
Q 008262 344 CSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 393 (572)
Q Consensus 344 ss~~l~hw~~d~----~~~L~ei~RvLKPGG~lv~st~P~~~tl~EL~~~w~~~ 393 (572)
+.. ........ ..+++.+.|.|+|||.+++...........++.....+
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl 209 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFC 209 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHH
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHH
Confidence 763 23221111 37899999999999999997532233333333333333
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.43 E-value=0.00026 Score=70.50 Aligned_cols=104 Identities=12% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHH----cCCCcEEEeccc-cCCCCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFAT-RRLPYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~----rg~~~~~~~~d~-e~LPfp~~sFDlI~ 343 (572)
..+++||-||.|.|..++.+++. +|+.+|+.+..+..+..-+... ......+...|. +-+.-..+.||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 46789999999999999999875 6999999987664332211110 011222332232 22222457899999
Q ss_pred eccccccccCC----hHHHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~~l~hw~~d----~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+... ...... ...+++.+.++|+|||.++....
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 7532 222111 13789999999999999999853
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.43 E-value=0.00012 Score=70.05 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=56.3
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 334 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf 334 (572)
..++++.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++......+. ......+...|.-.+++
T Consensus 8 ~i~~~iv~~~~----~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 8 HNIDKIMTNIR----LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHTTCC----CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHhcC----CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhccc
Confidence 45667777665 357789999999999999999876 79999999876533222111 11223455667777776
Q ss_pred CCCCeeEEEec
Q 008262 335 PSQAFDLIHCS 345 (572)
Q Consensus 335 p~~sFDlI~ss 345 (572)
+......|+++
T Consensus 82 ~~~~~~~vv~N 92 (235)
T d1qama_ 82 PKNQSYKIFGN 92 (235)
T ss_dssp CSSCCCEEEEE
T ss_pred cccccceeeee
Confidence 65555566665
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.38 E-value=0.00022 Score=65.31 Aligned_cols=131 Identities=12% Similarity=0.090 Sum_probs=75.6
Q ss_pred CCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC---CeEEEeCCccchHHHHHHHH
Q 008262 239 KDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFA 315 (572)
Q Consensus 239 g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A 315 (572)
|..+..|.+. ..+...+...+.|...|... -...+|||+-||||.++.+.+.+ .|+.||.+...+.... +.+
T Consensus 12 g~~l~~~~~~-~~RPt~~~vrealFn~l~~~---~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik-~Ni 86 (183)
T d2ifta1 12 GRKLPVLNSE-GLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK-KNL 86 (183)
T ss_dssp TCEEECC----------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHH
T ss_pred CCEecCCCCC-CcCcCcHHHHHHHHHHhhhh---cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHh-hHH
Confidence 4445555432 12334455556666666432 24578999999999999988877 7999999987553333 223
Q ss_pred HHcCCC---cEEEeccc-c--CCCCCCCCeeEEEeccccccccCChHHHHHHHHH--hccCCeEEEEEE
Q 008262 316 LERGAP---AMVAAFAT-R--RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 376 (572)
Q Consensus 316 ~~rg~~---~~~~~~d~-e--~LPfp~~sFDlI~ss~~l~hw~~d~~~~L~ei~R--vLKPGG~lv~st 376 (572)
...+.. ..+...+. . ........||+|++..-.. . ......|..+.. +|+++|++++..
T Consensus 87 ~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~-~-~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 87 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-F-NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp HHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-S-CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhcccccccccccccccccccccccCCcccEEEechhHh-h-hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 333332 22332222 1 2233455799999875421 1 223566666654 799999999875
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00046 Score=69.14 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCcE-EEecccc-
Q 008262 255 ADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATR- 330 (572)
Q Consensus 255 ~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e- 330 (572)
.+.+.+.+.+.+. ..+..+|||+-||+|.++..|++. +|+|+|.++..+..+. +.++..++.+. +...+.+
T Consensus 197 ~e~l~~~v~~~~~----~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~-~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 197 NQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTS
T ss_pred hhHHHHHHHHhhc----cCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHH-HhHHhcccccceeeecchhh
Confidence 3344555555554 346689999999999999999886 8999999998776554 45555666553 3333332
Q ss_pred CCC---CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 331 RLP---YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 331 ~LP---fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+. .....||+|+...-.-.. ...+.++.+ ++|.-.+++|..
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G~----~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAGA----AGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC----HHHHHHHHH-HCCSEEEEEESC
T ss_pred hhhhhhhhhccCceEEeCCCCccH----HHHHHHHHH-cCCCEEEEEeCC
Confidence 232 335679999976442221 345666655 478888888863
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.35 E-value=5.5e-05 Score=73.11 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=59.4
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcC--CC-cEEEeccccCCC
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG--AP-AMVAAFATRRLP 333 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg--~~-~~~~~~d~e~LP 333 (572)
++++.+.+. ..+..+|||||||+|.++..|++. +|+++|+++.++. .++++. .. ..+...|...++
T Consensus 18 i~kIv~~~~----~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~-----~l~~~~~~~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 18 LNQIIKQLN----LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN-----LSSEKLKLNTRVTLIHQDILQFQ 88 (245)
T ss_dssp HHHHHHHCC----CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSS-----SSSCTTTTCSEEEECCSCCTTTT
T ss_pred HHHHHHhcC----CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchh-----hhhhhhhhccchhhhhhhhhccc
Confidence 566666665 346688999999999999999876 8999999998763 222221 12 345556777788
Q ss_pred CCCCCeeEEEeccccccc
Q 008262 334 YPSQAFDLIHCSRCRINW 351 (572)
Q Consensus 334 fp~~sFDlI~ss~~l~hw 351 (572)
++...++.|+++.- .|+
T Consensus 89 ~~~~~~~~vv~NLP-Y~I 105 (245)
T d1yuba_ 89 FPNKQRYKIVGNIP-YHL 105 (245)
T ss_dssp CCCSSEEEEEEECC-SSS
T ss_pred cccceeeeEeeeee-hhh
Confidence 88888888887643 454
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.06 E-value=0.00061 Score=65.52 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCCCEEEEECCCCchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~--~~~~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.+..+|+|+|||.|.|+.+++.+ .|.|+++.-. +++.-+ .....+... +....+... .+.+..|+|+|..
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d-~~e~P~-~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm 140 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPI-PMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI 140 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCC-CCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCc-cccCCc-cccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence 45678999999999999999876 5667766421 110000 000001111 111112223 3467899999974
Q ss_pred ccccccCChH-------HHHHHHHHhccCCeEEEEEEC
Q 008262 347 CRINWTRDDG-------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ~l~hw~~d~~-------~~L~ei~RvLKPGG~lv~st~ 377 (572)
. .. ..++. .+|.-+.+.|+|||.|++-.+
T Consensus 141 ~-es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 141 G-ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp C-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred C-CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 3 33 23321 566777889999999999865
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.78 E-value=0.0027 Score=60.32 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCCEEEEECCCCchhHHHhc--------cCCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC----CCCCCeeE
Q 008262 274 HIRVVMDAGCGVASFGAYLL--------PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP----YPSQAFDL 341 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L~--------~~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP----fp~~sFDl 341 (572)
++.+|||||++.|..+..++ +.+|+++|+.+.... .+........+...|..... +....+|+
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl 154 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPL 154 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCE
Confidence 35789999999996544333 237999999764321 11111122233344432221 33556888
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.-.. |+. .....-+ +....|++||++++.+
T Consensus 155 IfID~~-H~~-~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 155 IFIDNA-HAN-TFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEESS-CSS-HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEEcCC-cch-HHHHHHH-HHhcccCcCCEEEEEc
Confidence 886532 332 2212223 4668999999999875
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.77 E-value=0.0021 Score=66.06 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=74.0
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc-----------------CCeEEEeCCccchHHHHHHHHHHc
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALER 318 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~-----------------~~V~gvDiSp~dl~~a~~~~A~~r 318 (572)
...++.|.+++. .....+|||-.||+|.|...+.+ ..+.|+|+.+....-+.......
T Consensus 148 ~~Iv~~mv~ll~----~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~- 222 (425)
T d2okca1 148 RPLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH- 222 (425)
T ss_dssp HHHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT-
T ss_pred hhhhHhhheecc----CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc-
Confidence 345566666665 24567899999999998765533 25899999987765555544432
Q ss_pred CCC---cEEEeccccCCCCCCCCeeEEEeccccccc-cC--------------Ch-HHHHHHHHHhccCCeEEEEEEC
Q 008262 319 GAP---AMVAAFATRRLPYPSQAFDLIHCSRCRINW-TR--------------DD-GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 319 g~~---~~~~~~d~e~LPfp~~sFDlI~ss~~l~hw-~~--------------d~-~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. ..+...+.-. ..+...||+|+++.-+..- .. +. ..++..+.+.|++||.+.+..+
T Consensus 223 g~~~~~~~i~~~d~l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 223 GIGTDRSPIVCEDSLE-KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp TCCSSCCSEEECCTTT-SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccceeecCchhh-hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 221 1122222221 2345789999998754211 00 01 2588999999999999888854
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.72 E-value=0.0017 Score=59.50 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=71.2
Q ss_pred HHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCC---
Q 008262 259 LDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL--- 332 (572)
Q Consensus 259 i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~~~-~~~~~d~e~L--- 332 (572)
++++.+.|. ..++..++|..||.|..+..+++. +|+|+|..+.++ ..+..+.... .+.......+
T Consensus 7 l~Evl~~l~----~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai-----~~a~~~~~~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 7 YQEALDLLA----VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAV-----ARAKGLHLPGLTVVQGNFRHLKRH 77 (182)
T ss_dssp HHHHHHHHT----CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHTCCTTEEEEESCGGGHHHH
T ss_pred HHHHHHhcC----CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHH-----HHHhhccccceeEeehHHHHHHHH
Confidence 445555554 356789999999999999999887 899999998765 3343332222 2222221111
Q ss_pred --CCCCCCeeEEEecccc--ccccCCh-------HHHHHHHHHhccCCeEEEEEEC
Q 008262 333 --PYPSQAFDLIHCSRCR--INWTRDD-------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 333 --Pfp~~sFDlI~ss~~l--~hw~~d~-------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.+..+.+|.|+..... .|. .++ ...|.....+|++||.+++.++
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~ql-d~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHL-DDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHH-HCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHcCCCccCEEEEEccCCHHHh-hcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1334679999975321 232 221 2578888999999999999874
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0045 Score=60.34 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCCCEEEEECCCCchhHHHhcc----CCeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--fp~~sFDlI~ss~ 346 (572)
.++.+|||+.+|.|.=+.+|++ ..|+++|+++.-+.... +.....|..+.....+..... ...+.||.|++-.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 5678999999999965544433 26999999998774443 445556666554443222211 2357899999532
Q ss_pred ----cc-c--------cccCCh--------HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 ----CR-I--------NWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ----~l-~--------hw~~d~--------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. + .|.... ..+|..+.+.|||||+++.+|-
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 11 1 121111 1678889999999999999983
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.63 E-value=0.0021 Score=63.70 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCCEEEEECCCCchhHHHhc---c-C-CeEEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCCCCCCCeeEEEecc
Q 008262 273 HHIRVVMDAGCGVASFGAYLL---P-R-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLPYPSQAFDLIHCSR 346 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~---~-~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~-~~d~e~LPfp~~sFDlI~ss~ 346 (572)
.++.+|||+.||.|.=+..++ . . .++++|.++.-+.... +.....+..+... ..|...++.....||.|++-.
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 567899999999996444443 2 2 6899999987654433 3334445555433 334455555578899999622
Q ss_pred ----cc-------ccccCCh----------HHHHHHHHHhccCCeEEEEEEC
Q 008262 347 ----CR-------INWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 347 ----~l-------~hw~~d~----------~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.. ..|.... ..+|.++.+.|||||+++.+|-
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 10 1111111 1678889999999999999984
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.005 Score=59.98 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=53.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCC
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP 333 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl~~a~~~~A~~rg~-~~~~~~~d~e~LP 333 (572)
..++.+.+.+. ..+...|||||+|+|.++..|+++ +|+++++++.++......+...... ...+...|.-...
T Consensus 8 ~i~~kIv~~~~----~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAA----LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTC----CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhC----CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 45666666665 245689999999999999999876 8999999987664333222221111 1233444544444
Q ss_pred CCCCCeeEEEecc
Q 008262 334 YPSQAFDLIHCSR 346 (572)
Q Consensus 334 fp~~sFDlI~ss~ 346 (572)
++ .++.|+++.
T Consensus 84 ~~--~~~~vV~NL 94 (278)
T d1zq9a1 84 LP--FFDTCVANL 94 (278)
T ss_dssp CC--CCSEEEEEC
T ss_pred hh--hhhhhhcch
Confidence 33 356788763
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.003 Score=60.68 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC--CeEEEeCCccch
Q 008262 257 QYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDV 307 (572)
Q Consensus 257 ~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvDiSp~dl 307 (572)
..++++.+.+. ..+...|||||||+|.++..|+++ +|+++|+++.++
T Consensus 8 ~~~~~Iv~~~~----~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~ 56 (252)
T d1qyra_ 8 FVIDSIVSAIN----PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLA 56 (252)
T ss_dssp HHHHHHHHHHC----CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHH
T ss_pred HHHHHHHHhcC----CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchh
Confidence 45666766665 245788999999999999999987 899999998655
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0056 Score=64.55 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=70.6
Q ss_pred HHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhcc----------------------CCeEEEeCCccchHHHHHH
Q 008262 256 DQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLP----------------------RNVITMSIAPKDVHENQIQ 313 (572)
Q Consensus 256 ~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~----------------------~~V~gvDiSp~dl~~a~~~ 313 (572)
...++.|.+++. .....+|+|-.||+|.|.....+ ..++|+|+.+.+..-+...
T Consensus 150 ~~Iv~~mv~ll~----~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 150 RPLIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp HHHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred cchhHhhhhccc----CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 345566666665 34567899999999988754322 1578999998766544444
Q ss_pred HHHHcCCCcE------EEeccccCC-CCCCCCeeEEEecccccc-cc-----------CCh-HHHHHHHHHhccCCeEEE
Q 008262 314 FALERGAPAM------VAAFATRRL-PYPSQAFDLIHCSRCRIN-WT-----------RDD-GILLLEVNRMLRAGGYFA 373 (572)
Q Consensus 314 ~A~~rg~~~~------~~~~d~e~L-Pfp~~sFDlI~ss~~l~h-w~-----------~d~-~~~L~ei~RvLKPGG~lv 373 (572)
... ++.... +...+.... ......||+|+++.-+.. +. .+. -.++..+.+.|++||++.
T Consensus 226 l~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 226 CLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp HHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 332 222111 111110000 123467999999875421 10 111 258999999999999998
Q ss_pred EEEC
Q 008262 374 WAAQ 377 (572)
Q Consensus 374 ~st~ 377 (572)
+..+
T Consensus 305 iIlP 308 (524)
T d2ar0a1 305 VVVP 308 (524)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.05 E-value=0.017 Score=58.45 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCchhHHHh-ccC---CeEEEeCCccchHHHHHHHHHHcCCCc----------------EEEeccccCCC
Q 008262 274 HIRVVMDAGCGVASFGAYL-LPR---NVITMSIAPKDVHENQIQFALERGAPA----------------MVAAFATRRLP 333 (572)
Q Consensus 274 ~~~~VLDIGCGtG~~a~~L-~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~----------------~~~~~d~e~LP 333 (572)
+..+|||..||+|..+... .+. .|++.|+++..+.....+. +..+... .....|+..+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~-~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNV-MLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHH-HHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHH-HhcCccccccccccccccccceeEeehhhhhhhh
Confidence 3578999999999888754 332 7999999997765444333 2233221 11111211111
Q ss_pred -CCCCCeeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 334 -YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 334 -fp~~sFDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
-..+.||+|.... + ..+..+|..+.|.++.||+|.++.
T Consensus 124 ~~~~~~fDvIDiDP----f-Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AERHRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHSTTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC----C-CCcHHHHHHHHHHhccCCEEEEEe
Confidence 1245799999653 2 455789999999999999999994
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.006 Score=54.19 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCCCCCCeeEEEeccc
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPYPSQAFDLIHCSRC 347 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-LPfp~~sFDlI~ss~~ 347 (572)
+++.+||-+|+| .|.++..+++. +|+++|.++.-+ +.+++.|....+...+... ..-..+.||+|+....
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~-----~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR-----EDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH-----HHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH-----HHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 567899999998 56777666654 899999987644 6677777654332221111 1112467999886422
Q ss_pred cccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 348 RINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 348 l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
..+ ...+.+..++|||+|.+++..
T Consensus 101 ~~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 101 SLT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred CCc-----cchHHHHHHHhhccceEEEec
Confidence 111 112456789999999998875
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.04 Score=53.53 Aligned_cols=103 Identities=9% Similarity=-0.009 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCchhHHHhcc----C-CeEEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCC---CCCeeEEE
Q 008262 273 HHIRVVMDAGCGVASFGAYLLP----R-NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYP---SQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGtG~~a~~L~~----~-~V~gvDiSp~dl~~a~~~~A~~rg~~~~-~~~~d~e~LPfp---~~sFDlI~ 343 (572)
.++.+|||+.||.|.=+.+|++ . .|+++|+++.-+... .+.+...|..+. +...|...+... .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l-~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASM-ATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHH-HHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 4678899999999976665543 2 699999998655433 344455566653 333344444322 25799999
Q ss_pred ecc----cc-------cccc--CC---hH-------HHHHHHHHhccCCeEEEEEEC
Q 008262 344 CSR----CR-------INWT--RD---DG-------ILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 344 ss~----~l-------~hw~--~d---~~-------~~L~ei~RvLKPGG~lv~st~ 377 (572)
+.. .. ..|. .+ .. .+|..+. .|+|||.++.+|-
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC 227 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC 227 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence 542 10 0111 01 01 2333444 4799999999984
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.66 E-value=0.026 Score=56.71 Aligned_cols=100 Identities=13% Similarity=0.255 Sum_probs=61.4
Q ss_pred CEEEEECCCCchhHHHhccC--------------------CeEEEeCCccchHHHHHHHHHHcC-CCcEEEec---cccC
Q 008262 276 RVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALERG-APAMVAAF---ATRR 331 (572)
Q Consensus 276 ~~VLDIGCGtG~~a~~L~~~--------------------~V~gvDiSp~dl~~a~~~~A~~rg-~~~~~~~~---d~e~ 331 (572)
-+|.|+||.+|..+..+.+. +|.--|+-.+|...-......... .+..+..+ ....
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 56999999999655322211 566678888777443322211111 11222221 2222
Q ss_pred CCCCCCCeeEEEeccccccccCC---------------------------------hHHHHHHHHHhccCCeEEEEEE
Q 008262 332 LPYPSQAFDLIHCSRCRINWTRD---------------------------------DGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 332 LPfp~~sFDlI~ss~~l~hw~~d---------------------------------~~~~L~ei~RvLKPGG~lv~st 376 (572)
-=||++|.|++||+.+ +||... ...+|+-=.+-|+|||.++++.
T Consensus 133 rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3378999999999866 888531 1146666677889999999985
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.57 E-value=0.037 Score=48.57 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=61.3
Q ss_pred CCCCEEEEECCC-CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC--------CC-CCCCCe
Q 008262 273 HHIRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--------LP-YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCG-tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~--------LP-fp~~sF 339 (572)
.+..+||-+||| .|.++.+++.. +|+++|.++. ..+.+++.+....+....... +. ...+.+
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH-----HHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 467889999998 46666666543 8999987764 447777777654333211110 00 113568
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+-.. .....+.++.++||+||.+++...
T Consensus 100 D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 100 NVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 9998531 225788999999999999998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.39 E-value=0.049 Score=48.58 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp~~sFDl 341 (572)
++..+||=+|||. |.++..+++. .|+++|.++. +.+.+++.|....+... .+.+. .....||+
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~-----r~~~a~~lGa~~~i~~~-~~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI-----CVEAAKFYGATDILNYK-NGHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH-----HHHHHHHHTCSEEECGG-GSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh-----hHHHHHhhCcccccccc-chhHHHHHHHHhhccCcce
Confidence 4667899999996 7777777664 6899987753 44677777754332211 11110 12345999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+-.-. ....+.+..++|||+|.+++...
T Consensus 100 vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 100 VIMAGG-------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEccC-------CHHHHHHHHHHHhcCCEEEEEee
Confidence 985421 13567888999999999999753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.93 E-value=0.13 Score=46.52 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC--------CCCCe
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY--------PSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPf--------p~~sF 339 (572)
+++.+||.+|||. |.++..++.. .|+++|.++. +.+.|++.|....+ +....++ ....+
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~-----rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA-----RLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch-----hhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCc
Confidence 5678999999997 5555555532 7889988764 44778777754322 1111111 23468
Q ss_pred eEEEecccc------c--cccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 340 DLIHCSRCR------I--NWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 340 DlI~ss~~l------~--hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+++-.-.. . .........|.++.+++||||.+++..
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 999853210 0 011223579999999999999999885
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.063 Score=47.33 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC------CCCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L------Pfp~~sFDl 341 (572)
+++.+||-+|+ |.|..+..+++. +|++++-++ ...+.+++.|....+...+ +++ -...+.||+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~-----~~~~~~~~~Ga~~vi~~~~-~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE-----EGQKIVLQNGAHEVFNHRE-VNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHTTCSEEEETTS-TTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeccccccccccccccccCcccccccccc-----cccccccccCccccccccc-ccHHHHhhhhhccCCceE
Confidence 56789999997 356666666654 788877554 2346777777654332111 111 013467999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
|+.... ...+.+..++|+|+|.++...
T Consensus 101 v~d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 101 IIEMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred Eeeccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 996522 457888999999999998864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.21 E-value=0.082 Score=46.91 Aligned_cols=91 Identities=26% Similarity=0.384 Sum_probs=59.2
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-------C-C-CCCCC
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-------L-P-YPSQA 338 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~-------L-P-fp~~s 338 (572)
.++.+||-+|||. |.++..++.. +|+++|.++. ..+.+++.|....+...+ +. + . .....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~-----~~~~a~~lGa~~vi~~~~-~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN-----RLKLAEEIGADLTLNRRE-TSVEERRKAIMDITHGRG 100 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH-----HHHHHHHTTCSEEEETTT-SCHHHHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccc-----cccccccccceEEEeccc-cchHHHHHHHHHhhCCCC
Confidence 4678999999983 6666666554 6889988764 346777777543332111 11 0 0 12346
Q ss_pred eeEEEeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 339 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 339 FDlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+|+|+..-. ....+.++.++|++||.+++..
T Consensus 101 ~Dvvid~vG-------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 101 ADFILEATG-------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeecCC-------chhHHHHHHHHhcCCCEEEEEe
Confidence 999985421 1356888999999999998874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.10 E-value=0.092 Score=46.39 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI 342 (572)
.+..+||=+|||. |.++..+++. .|+++|.++. ..+.+++.|....+... .++. .+.++.||+|
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~-----k~~~a~~~Ga~~~i~~~-~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES-----RLELAKQLGATHVINSK-TQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH-----HHHHHHHHTCSEEEETT-TSCHHHHHHHHTTSCEEEE
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH-----HHHHHHHcCCeEEEeCC-CcCHHHHHHHHcCCCCcEE
Confidence 5678999999985 3445555433 5667776653 45777777765433221 1111 1234679999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+-.- -....+.++.++|||+|.+++..
T Consensus 101 id~~-------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 101 LEST-------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp EECS-------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred EEcC-------CcHHHHHHHHhcccCceEEEEEe
Confidence 8431 12568889999999999999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.90 E-value=0.065 Score=46.75 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=56.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L-----Pfp~~sFDlI~ 343 (572)
++..+||=+|||. |.++..+++. +|+++|.++. ..+.+++.|....+...+ +.. ....+.+|.|.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~-----~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA-----KLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh-----HHHhhhccCccccccccc-hhHHHHHHHhhcCCccccc
Confidence 4678899999985 5555555543 7899987754 446777777544332111 111 01123345555
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+... ...+.++.+.|++||.+++..
T Consensus 100 ~~~~--------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAVS--------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred cccc--------chHHHHHHHHhcCCcEEEEEE
Confidence 4322 467889999999999998875
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.70 E-value=0.19 Score=44.53 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp~~sFDl 341 (572)
.++.+||=+|||. |.++..+++. .|+.+|.++.- .+.+++.|....+.....+... ...+.+|+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-----~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK-----FPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG-----HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH-----HHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 5678999999997 7777666654 68888888753 3778887765443211111110 12457899
Q ss_pred EEeccccccccCChHHHHHHHHHhccCC-eEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPG-G~lv~st~ 377 (572)
|+-. .-.+..+.+..+.|++| |.+++...
T Consensus 102 vie~-------~G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 102 SLDC-------AGTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEES-------SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEe-------cccchHHHHHHHHhhcCCeEEEecCC
Confidence 9843 12367899999999997 99998753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.1 Score=45.78 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 339 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP--------fp~~sF 339 (572)
.+..+||=+|||. |.++..++.. +|+++|.++. ..+.+++.|....+... .+... -....+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~-----rl~~a~~~Ga~~~~~~~-~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT-----RLSKAKEIGADLVLQIS-KESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTTCSEEEECS-SCCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH-----HHHHHHHhCCccccccc-ccccccccccccccCCCCc
Confidence 4668999999986 4444444433 6899987754 45778877765433321 11110 012468
Q ss_pred eEEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 340 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 340 DlI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
|+|+... -....+..+.+.+|+||.+++...
T Consensus 99 Dvvid~~-------G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 99 EVTIECT-------GAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred eEEEecc-------CCchhHHHHHHHhcCCCEEEEEec
Confidence 9998642 125688999999999999999854
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.18 Score=44.07 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecccc
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 348 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LPfp~~sFDlI~ss~~l 348 (572)
+++.+||=+|||. |.++.++++. +++++|.++... +++++.|....+...+........+.+|.|+-.-.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-----~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-----EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-----HHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-----HHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence 5678999999984 6677666654 677888776533 56777776543322111111122357999985421
Q ss_pred ccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 349 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 349 ~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
....+....++|++||.+++...
T Consensus 103 ------~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 103 ------APHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------SCCCHHHHHTTEEEEEEEEECCC
T ss_pred ------cchhHHHHHHHHhcCCEEEEecc
Confidence 12346778899999999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.22 E-value=0.19 Score=43.79 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCCCEEEEECCC--CchhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCee
Q 008262 273 HHIRVVMDAGCG--VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFD 340 (572)
Q Consensus 273 ~~~~~VLDIGCG--tG~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp~~sFD 340 (572)
.+..+||=+||+ .|.++..++.. .|+++|.++. ..+++++.|....+. ...++.. ...+.||
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~-----~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE-----AVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH-----HHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchh-----hHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccch
Confidence 567899999973 45555555442 7888887753 446777777544332 1111110 1245699
Q ss_pred EEEeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 341 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 341 lI~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+|+... -....+..+.+.|+|||.+++...
T Consensus 100 ~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLN-------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESC-------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhccc-------ccchHHHhhhhhcccCCEEEEecc
Confidence 998642 225677888999999999988753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.83 E-value=0.23 Score=42.87 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCCCEEEEECCCC-chhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC----C-CCCCCeeEEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL----P-YPSQAFDLIH 343 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L----P-fp~~sFDlI~ 343 (572)
.+..+||=.|||. |.++..++.. +|+++|.++. ..+++++.|....+...+ +.. . ...+.+|.|.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~-----r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE-----KLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH-----HHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH-----HhhhhhhcCcceeccccc-chhhhhcccccCCCceEEe
Confidence 4678899999986 4455444443 7888876653 446777777654332111 111 1 1233455554
Q ss_pred eccccccccCChHHHHHHHHHhccCCeEEEEEE
Q 008262 344 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 376 (572)
Q Consensus 344 ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st 376 (572)
+.. ....+....++|+|||.+++..
T Consensus 100 ~~~--------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 100 TAV--------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSC--------CHHHHHHHHHHEEEEEEEEECC
T ss_pred ecC--------CHHHHHHHHHHhccCCceEecc
Confidence 321 2567899999999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=84.56 E-value=1.6 Score=38.04 Aligned_cols=93 Identities=10% Similarity=-0.050 Sum_probs=57.5
Q ss_pred CCCCEEEEECCCCc-hhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC------CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGVA-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGtG-~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L------Pfp~~sFDl 341 (572)
++..+||=+|||.. .++..+++. .|+++|.++.-+ +.+++.|....+...+.+.. -...+.+|.
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-----~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-----PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-----HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-----HHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 56789999999854 444444432 799999887544 77888776544322111111 012356888
Q ss_pred EEeccccccccCChHHHHHHHHHhccC-CeEEEEEEC
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRA-GGYFAWAAQ 377 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKP-GG~lv~st~ 377 (572)
|+-.- .....+.+..+.|++ +|.+++...
T Consensus 101 vid~~-------g~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 101 AVECA-------GRIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp EEECS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEcC-------CCchHHHHHHHHHHHhcCceEEEEE
Confidence 88431 225667777777765 599988764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.80 E-value=0.72 Score=40.05 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----CCCCCeeEE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----YPSQAFDLI 342 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP-----fp~~sFDlI 342 (572)
.+..+||-+|||. |.++..++.. .|+++|.++. +.+.+++.+....+. ...+... ...+.+|+|
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~-----k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE-----KLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH-----HHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH-----HHHHHhhcccceeec-CcccHHHHHHHhhCCCCceEE
Confidence 4568899999986 4454555432 6788877753 446777766543332 1111110 123469999
Q ss_pred EeccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 343 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 343 ~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
+-.. .....+.+..+.|++||.+++...
T Consensus 105 id~~-------g~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFV-------GSQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESS-------CCHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEec-------CcchHHHHHHHHHhCCCEEEEEeC
Confidence 8542 125678999999999999998753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.44 E-value=0.54 Score=40.96 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=56.9
Q ss_pred CCCCEEEEECC--CCchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 008262 273 HHIRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGC--GtG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~LP------fp~~sFDl 341 (572)
+++.+||=.|. |.|.++.+++.. ++++++-++ ...+.+++.|....+. ...+++. .....||+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~-----~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD-----AKREMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDV 97 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH-----HHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeeccc-----cccccccccccccccc-CCccCHHHHHHHHhCCCCEEE
Confidence 56788999873 356677777654 677765443 2346777777654332 1111110 13467999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
|+.... ...+.++.++|+++|.++..
T Consensus 98 v~d~~g--------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 98 VLNSLA--------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred EEeccc--------chHHHHHHHHhcCCCEEEEE
Confidence 997522 35788899999999999876
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.92 E-value=1 Score=39.82 Aligned_cols=92 Identities=21% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCCCEEEEECCC--CchhHHHhccC---CeEEEeCCccchHHHHHHHHHHcCCCcEEEecc--ccC-CCCCCCCeeEEEe
Q 008262 273 HHIRVVMDAGCG--VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFA--TRR-LPYPSQAFDLIHC 344 (572)
Q Consensus 273 ~~~~~VLDIGCG--tG~~a~~L~~~---~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d--~e~-LPfp~~sFDlI~s 344 (572)
.++.+||=.|++ .|.++.+|++. +|+++.-++... +.+++.|....+...+ .+. .....+.+|+|+-
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-----~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid 104 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-----DYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVD 104 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-----HHHHHTTCSEEEECC---------CCSCCEEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-----HHHHhcccceeeecchhHHHHHHHhhccCcCEEEE
Confidence 346789999864 56788887765 788887665433 6666666554332111 111 1224568999985
Q ss_pred ccccccccCChHHHHHHHHHhccCCeEEEEEEC
Q 008262 345 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 377 (572)
Q Consensus 345 s~~l~hw~~d~~~~L~ei~RvLKPGG~lv~st~ 377 (572)
.-. ...+.+..++|+|||.++....
T Consensus 105 ~vg--------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 105 PVG--------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CST--------TTTHHHHHHTEEEEEEEEECSC
T ss_pred cCC--------chhHHHHHHHhCCCceEEEeec
Confidence 422 3458889999999999988753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.57 E-value=0.65 Score=45.16 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=35.2
Q ss_pred HHHHHHHHhccc--cccCCCCCEEEEECCCCchhHHHhccC----CeEEEeCCccch
Q 008262 257 QYLDQIAKMVPD--ITWGHHIRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDV 307 (572)
Q Consensus 257 ~~i~~L~~~L~~--i~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvDiSp~dl 307 (572)
..++.+.+.+.- ........+|||||.|.|.++..|++. +|+++|+.+...
T Consensus 24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~ 80 (322)
T d1i4wa_ 24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY 80 (322)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH
T ss_pred HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 345555555431 111234678999999999999999753 699999988654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=81.02 E-value=0.93 Score=44.60 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=35.4
Q ss_pred hhccCCeeeccCCCccccccHHHHHHHHHHhccccccCCCCCEEEEECCCCchhHHHhccC-----------CeEEEeCC
Q 008262 235 ISKEKDKFKFPGGGTQFIHGADQYLDQIAKMVPDITWGHHIRVVMDAGCGVASFGAYLLPR-----------NVITMSIA 303 (572)
Q Consensus 235 v~~~g~~~~Fpggg~~f~~g~~~~i~~L~~~L~~i~~~~~~~~VLDIGCGtG~~a~~L~~~-----------~V~gvDiS 303 (572)
+..+||.++=|.-+..|......++..+.+.+. .....+|+|+|+|+|.++..++.. +++-++.|
T Consensus 44 iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~----~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s 119 (365)
T d1zkda1 44 LGREGDFTTSPEISQMFGELLGLWSASVWKAAD----EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 119 (365)
T ss_dssp ------CCSHHHHCHHHHHHHHHHHHHHHHHTT----CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CCCCCCeECCCchHHHHHHHHHHHHHHHHHHhC----CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccc
Confidence 344556555554445553332222222222232 123457999999999988766431 47788988
Q ss_pred cc
Q 008262 304 PK 305 (572)
Q Consensus 304 p~ 305 (572)
+.
T Consensus 120 ~~ 121 (365)
T d1zkda1 120 PV 121 (365)
T ss_dssp HH
T ss_pred hh
Confidence 85
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.27 E-value=1.9 Score=36.87 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=57.1
Q ss_pred CCCCEEEEECCCC-chhHHHhccC----CeEEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC------CCCCCCeeE
Q 008262 273 HHIRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDL 341 (572)
Q Consensus 273 ~~~~~VLDIGCGt-G~~a~~L~~~----~V~gvDiSp~dl~~a~~~~A~~rg~~~~~~~~d~e~L------Pfp~~sFDl 341 (572)
+++.+||=+|||. |.++..++.. .|+++|.++.- .+.+++.|....+...+.... ....+.+|+
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k-----~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~ 101 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK-----FARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDY 101 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG-----HHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH-----HHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcE
Confidence 5678999999983 3444444443 67888877653 367777776544322111111 012356999
Q ss_pred EEeccccccccCChHHHHHHHHHhccCCeEEEEE
Q 008262 342 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 375 (572)
Q Consensus 342 I~ss~~l~hw~~d~~~~L~ei~RvLKPGG~lv~s 375 (572)
|+-.- -...++..+..++++||.+++.
T Consensus 102 vid~~-------G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 102 SFECI-------GNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp EEECS-------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred eeecC-------CCHHHHHHHHHhhcCCceeEEE
Confidence 98541 1256888899999999887665
|