Citrus Sinensis ID: 008270

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-
Protein Sequence
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHccccEEEEEccccccHHHHHHcccEEEcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccEcccccccEEEEcccccHHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEcccccccccHHHHHHHHHHHcccccHHHHHccccc
Coil and Loop (DISEMBL)
MGGDVTGTVTASvsapmastaERQYVTAKTSVwwdiencqvpkncdphtiAQNISSALVKmnycgpvsisaygdtnripaSVQHALSSTgialnhvpagvkdasdkkILVDMLFWavdnpapsnyllisgdrdfSNALHQLRMRRYNILlaqphkasaPLVAAAKSVWLWTSLvaggpplasgesllhtndfgtfnpedepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqesknndysyQFEHSQqkqfkkapheffggtgeprsnpnffpchtdlsggngnnfsgnfrnqhllrpnnfpmqpnfpqdnflphnsqnhgfrpippssngprfppappanlpdigklnmseypnyaqncpnfhpqsgeelkssyfespnpaslnvpqkghampggqasnrdslnsrhsrgpegppsssssttfpassnggwgtqgrltpseYVQGLIGVILLALNTlkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSlgalplyvpkneklwncenlygnpnqypkEVWDRIQKFLTSSSGRSAIMASQCR
Flexible Loop (DISEMBL)
mggdvtgtvtasvsapmastaerqYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPegppsssssttfPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFltsssgrsaimasqcr
Low Complexity Region (SEG)
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLsggngnnfsgnfRNQHLLRpnnfpmqpnfpqdnfLPHNSQNHGFRpippssngprfppappanlpdigKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNsrhsrgpegppsssssttfpassNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR
Disordered region (IsUnstruct)
***********************QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL******************************************************************************************************************************************************************************************************************************************************************************RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFL***************
Disordered Region (DISOPRED)
******************************SVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASG*****TNDFGTF***************************************************************************************************************************************************************************************************************************************************************************GVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQ**
Disordered Region (DISEMBL)
**********ASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQ**********KAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQK******************************************WGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR
Disordered Region (DISPRO)
***********************QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLA*********DFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVP*********************************************************************************************************PAPPANLPDIGKLNMSEYPN********************************************N*D**********************************RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTS*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	571	2.2.26 [Sep-21-2011]
Q8BJ34	1730	Meiosis arrest female pro	yes	no	0.255	0.084	0.268	7e-10
B2GUN4	1681	Meiosis arrest female pro	yes	no	0.285	0.096	0.259	7e-10
Q8VIG2	1735	Meiosis arrest female pro	yes	no	0.255	0.084	0.268	7e-10
E1BZ85	1741	Meiosis arrest female pro	yes	no	0.255	0.083	0.268	8e-10
Q9Y4F3	1742	Meiosis arrest female pro	yes	no	0.255	0.083	0.268	1e-09
E1BP74	1742	Meiosis arrest female pro	yes	no	0.255	0.083	0.268	1e-09

>sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1 OS=Mus musculus GN=Marf1 PE=1 SV=3

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP      T+ Q I     + +           D ++    V   L++  +
Sbjct: 354 VFWDIENCSVPSGRSATTVVQRIREKFFRGH--REAEFICVCDISKENKEVIQELNNCQV 411

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 412 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 471

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 472 VHKNQASEALLHHANQLIRFEEFISDLPP 500

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.
Mus musculus (taxid: 10090)

>sp|B2GUN4|MARF1_XENTR Meiosis arrest female protein 1 homolog OS=Xenopus tropicalis GN=marf1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 15  APMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGD 74
           +P  +T + Q       V+WDIENC VP      T+ + I   L K +           D
Sbjct: 325 SPDLATGQMQENLPPIGVFWDIENCSVPSGRSAVTVVKRIRERLFKGH--REAEFICVCD 382

Query: 75  TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDF 134
            ++    V   L++  + + H+ A  K+A+D K+   +  +A  + +P+  +L+S D +F
Sbjct: 383 ISKENKEVIEELNNCQVTVAHINATAKNAADDKLRQSLRRFADTHTSPATVVLVSTDVNF 442

Query: 135 SNALHQLRMRR-YNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
           +  L  LR R  ++I+L   ++AS  L+  A  +  +   ++  PP
Sbjct: 443 ALELSDLRHRHSFHIILIHKNQASEALLHHAHELIHFEEFISDLPP 488

Xenopus tropicalis (taxid: 8364)

>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP      T+ Q I     + +           D ++    V   L++  +
Sbjct: 353 VFWDIENCSVPSGRSATTVVQRIREKFFRGHR--EAEFICVCDISKENKEVIQELNNCQV 410

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 471 VHKNQASEALLHHANQLIRFEEFISDLPP 499

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Rattus norvegicus (taxid: 10116)

>sp|E1BZ85|MARF1_CHICK Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 347 VFWDIENCSVPTGRSAVAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 404

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  + I+L
Sbjct: 405 TVAHINATAKNAADDKLRQSLRRFADTHTAPATVVLVSTDVNFALELSDLRHRHGFRIIL 464

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 465 VHKNQASEALLHHAHELVCFEEFISDLPP 493

Gallus gallus (taxid: 9031)

>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1 SV=6

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 355 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 412

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 413 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 472

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 473 VHKNQASEALLHHANELIRFEEFISDLPP 501

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Homo sapiens (taxid: 9606)

>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 353 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 410

Query: 92  ALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 150
            + H+ A  K+A+D K+   +  +A  + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470

Query: 151 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 179
              ++AS  L+  A  +  +   ++  PP
Sbjct: 471 VHKNQASEALLHHANELIRFEEFISDLPP 499

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	571
359479976	640	PREDICTED: uncharacterized protein LOC10	0.973	0.868	0.627	0.0
255548285	627	hypothetical protein RCOM_1343910 [Ricin	0.973	0.886	0.596	0.0
359487696	638	PREDICTED: uncharacterized protein LOC10	0.922	0.826	0.588	1e-170
449463551	665	PREDICTED: uncharacterized protein LOC10	0.931	0.8	0.561	1e-168
255543024	703	nucleic acid binding protein, putative [	0.938	0.762	0.568	1e-164
356572894	632	PREDICTED: uncharacterized protein LOC10	0.942	0.851	0.544	1e-152
297821118	674	hypothetical protein ARALYDRAFT_486728 [	0.940	0.796	0.525	1e-151
356503990	631	PREDICTED: uncharacterized protein LOC10	0.942	0.852	0.538	1e-149
357511719	638	Limkain-b1 [Medicago truncatula] gi|3555	0.926	0.829	0.521	1e-148
356533521	617	PREDICTED: uncharacterized protein LOC10	0.910	0.842	0.528	1e-144

>gi|359479976|ref|XP_002273252.2| PREDICTED: uncharacterized protein LOC100253767 [Vitis vinifera]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/594 (62%), Positives = 432/594 (72%), Gaps = 38/594 (6%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           MGGD  G   A  + P    AE QYV+ KTSVWWDIENCQVPK CDPH IAQNISSAL K
Sbjct: 1   MGGDGNGGTAARATLP----AEPQYVSVKTSVWWDIENCQVPKGCDPHAIAQNISSALAK 56

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 120
           + Y GPVSISAYGDTNRIPASVQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP
Sbjct: 57  LYYSGPVSISAYGDTNRIPASVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 116

Query: 121 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 180
           AP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPL+AAAKSVWLWTSLVAGG PL
Sbjct: 117 APANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLVAGGFPL 176

Query: 181 ASGESLLHTNDFGTFNPE------DEPVQVSQPMGNS------------NTGRVSDTKLK 222
            SGES    +    FNPE       E +Q SQP+ ++            + GRV DTK K
Sbjct: 177 TSGESSQLADCNNVFNPEMSQYPVPETMQTSQPVDSNSDGLSAGTQKFFSAGRVGDTKSK 236

Query: 223 GKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHE-FFGGTGEPRS 281
           GK+ +K  NQP+I+R +S  V +QES  N +S+Q E++Q K      HE      G   S
Sbjct: 237 GKFIRKIANQPNITRASSVLVGIQES--NSFSHQPEYTQGK------HESVVSANG---S 285

Query: 282 NPNFFPCHTDLSGGNGNNFSGNFRNQ--HLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPI 339
            PN+F  + D SG NGNNF GN ++   H LRPNN P Q +F  +N  P NS +HGFRP+
Sbjct: 286 TPNYFQGNPDSSGINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPNSYSHGFRPM 345

Query: 340 PPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLN 399
           PP S GPRFP APPAN+PDI +L+MSEYPNYAQN PNFH + G E K    ESP+P  LN
Sbjct: 346 PPRSEGPRFPSAPPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSSESPHPPGLN 405

Query: 400 VPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYV 458
           VPQKG+     Q   +D+ ++R+  GP+ P  SSS       SSNG WG+QG   PSEYV
Sbjct: 406 VPQKGYLPHTSQLLYQDTSSNRYPGGPDLPAHSSSPVGANSVSSNGVWGSQGCPQPSEYV 465

Query: 459 QGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSL 518
           QGLIGVILL LNTLK E+++P+E NI+DCIR+G+PKH+NTDVRKAL  A+EQ MV+K++L
Sbjct: 466 QGLIGVILLTLNTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVEQQMVVKQNL 525

Query: 519 GALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
           GA+ LYV K E+LW C N + GNPNQYPK  WDRIQ FL +S GRSAIMASQC+
Sbjct: 526 GAVQLYVGKKERLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMASQCK 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548285|ref|XP_002515199.1| hypothetical protein RCOM_1343910 [Ricinus communis] gi|223545679|gb|EEF47183.1| hypothetical protein RCOM_1343910 [Ricinus communis]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/592 (59%), Positives = 415/592 (70%), Gaps = 36/592 (6%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           M GDVTG + ++     A+ AE QYV+AKTSVWWDIENCQVPK CDPH IAQNISSALVK
Sbjct: 1   MVGDVTGGIAST--GTAAAAAEAQYVSAKTSVWWDIENCQVPKGCDPHAIAQNISSALVK 58

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 120
           +NYCG VSISAYGDTNRIP SVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP
Sbjct: 59  LNYCGAVSISAYGDTNRIPQSVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 118

Query: 121 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 180
           AP+NYLLISGDRDFSN LHQLRMRRYNILLAQP KASAPL+AAAK+VWLWTSL AGG PL
Sbjct: 119 APANYLLISGDRDFSNCLHQLRMRRYNILLAQPQKASAPLIAAAKTVWLWTSLSAGGAPL 178

Query: 181 ASGESLLHTNDFGTFNP------EDEPVQVSQPMGNSNTG--------RVSDTKLKGKYT 226
           ++GES    N   TFN         E +Q S+   N++ G         V +T+ KGKY 
Sbjct: 179 SNGESTQLANVSSTFNAVTSQSRYTETIQFSKATENASLGYSNPFTNVNVGETRFKGKYV 238

Query: 227 KKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGG----TGEPRSN 282
           +    QP ISR +SAPV +QE+ +N+Y YQ + +Q KQFKKAPHEFFGG         S 
Sbjct: 239 QNTAKQPGISRASSAPVAVQETSSNEYPYQLDRAQAKQFKKAPHEFFGGNRPVVSASIST 298

Query: 283 PNFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIP 340
           PNFFP ++D +G NG+N  G+ + Q+   +RPN F MQ     D FL  +S+        
Sbjct: 299 PNFFPGNSDPAGSNGSNLIGSAQYQYAQPVRPNKFSMQQPVSPDGFLSMHSR-------- 350

Query: 341 PSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNV 400
           P +   +F      N+PDIGKL MSE   Y ++ PN H Q+ E+LK    ES N A LN 
Sbjct: 351 PEAFATKFSSTSFKNVPDIGKLGMSESCTYIEDAPNLHQQTVEQLKMGSVESSNSAFLNP 410

Query: 401 PQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQG 460
           P K   M   Q  NR          P  P  S+++     SSN  WGTQGR  PSE+VQG
Sbjct: 411 PHKSLMMYSSQEDNRYPCAPEFPPPPFSPEVSNTT-----SSNVIWGTQGRPPPSEHVQG 465

Query: 461 LIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 520
            IGVILLAL TLK E+++P+EANITDCIR+G+ KHR+ DVRKAL+ AIE +MV+K+SLG 
Sbjct: 466 HIGVILLALYTLKAEKIMPTEANITDCIRFGDKKHRSIDVRKALDSAIEHNMVMKQSLGE 525

Query: 521 LPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
           +PLYV KNEKLW C N L GNPNQYPK +WD IQ+FLTSS+GRSAI+AS CR
Sbjct: 526 MPLYVGKNEKLWKCVNPLGGNPNQYPKAIWDGIQRFLTSSTGRSAILASHCR 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487696|ref|XP_002276596.2| PREDICTED: uncharacterized protein LOC100242533 [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 337/573 (58%), Positives = 390/573 (68%), Gaps = 46/573 (8%)

Query: 20  TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
            AE QY  AKTSVWWDIENCQVPK C+PH+IAQNISSAL  MNY GPVSISAYGDT+RIP
Sbjct: 30  VAEAQYSGAKTSVWWDIENCQVPKGCEPHSIAQNISSALFTMNYKGPVSISAYGDTHRIP 89

Query: 80  ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALH 139
             VQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALH
Sbjct: 90  PPVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALH 149

Query: 140 QLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGES-LLHTNDFGTFN-- 196
           QLRMRRYNILLAQP KASAPL+AAAKSVWLWTSL+AGG PL +GES  L  N + + +  
Sbjct: 150 QLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLLAGGLPLTNGESQQLGNNSYSSSDTL 209

Query: 197 --PEDEPVQVSQP---------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVASAP 242
             P  +P+Q +Q          +GN    N GR +D K KGK  ++  NQP+I R ASAP
Sbjct: 210 PIPVSDPIQTNQSVDSFSENSYLGNQKLPNMGRTADIKYKGKQNRRNLNQPNIPRTASAP 269

Query: 243 VPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSG 302
                             QQ      P+    G       PNFF    D S  NG+N   
Sbjct: 270 ------------------QQLSGAYNPNASLNGHA-----PNFFSGSPDPSRSNGHNLQS 306

Query: 303 NFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIG 360
           N++N +   LRP NFP QP F   N  P N        +PP  +GP F   PP N+PD+G
Sbjct: 307 NYQNHYSQPLRP-NFPSQPTFGPSNSFPPNPHTPASHIMPPRPDGPGFTNGPP-NVPDVG 364

Query: 361 KLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNS 420
            LN+SEYP+   N P+F  + GE  ++S  ESPNP SL+  QKGH +    +   D  N+
Sbjct: 365 VLNISEYPSNVHNPPSFQQRDGELKRNSNIESPNPGSLSGQQKGHILHDTPSFYHDPQNN 424

Query: 421 RHSRGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVP 479
           R+SRGPE PPSSSS+  T    SNG WG+ G   PSEYVQGLIGVILLALNTLK E+++P
Sbjct: 425 RYSRGPEFPPSSSSAMGTTNVPSNGIWGSHGCQKPSEYVQGLIGVILLALNTLKNEKILP 484

Query: 480 SEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLY- 538
           +EANI DCIRYG+PKH+NTDV+KAL  AIEQ MVIK+ LG + LYV KN++LW C NL  
Sbjct: 485 TEANIADCIRYGDPKHQNTDVKKALESAIEQQMVIKQKLGTVQLYVGKNDRLWKCVNLMG 544

Query: 539 GNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
           GNP QY K  WD IQ FL S +GRSAIMASQC+
Sbjct: 545 GNPKQYSKATWDGIQNFLISPAGRSAIMASQCK 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463551|ref|XP_004149497.1| PREDICTED: uncharacterized protein LOC101219837 [Cucumis sativus] gi|449522226|ref|XP_004168128.1| PREDICTED: uncharacterized protein LOC101228378 [Cucumis sativus]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 340/606 (56%), Positives = 398/606 (65%), Gaps = 74/606 (12%)

Query: 22  ERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPAS 81
           E QY+ AKTSVWWDIENCQVPK CDPH IAQNISSALVK+NYCGPVSISAYGDTNRIP S
Sbjct: 16  EPQYIRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNS 75

Query: 82  VQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQL 141
           +Q ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALHQL
Sbjct: 76  IQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQL 135

Query: 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEP 201
           RMRRYNILLAQP KASAPLVAAAKSVWLW SLVAGG P++S ES    N      P  EP
Sbjct: 136 RMRRYNILLAQPQKASAPLVAAAKSVWLWMSLVAGGLPISSTESSQLVNGI----PTSEP 191

Query: 202 VQVSQPMG---NSNTG---------------------RVSDTKLKGKYTKKPTNQPSISR 237
            Q+SQ  G   N +TG                     R+ D K KGKY +K +NQP ISR
Sbjct: 192 -QISQTSGFDHNQHTGQAIVYKPENVNLGNQRSYSTERMGDNKHKGKYVQKNSNQPVISR 250

Query: 238 VASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEP-----RSNPNFF---PCH 289
             S+P  MQE KN ++  Q  H Q KQFKKAPHEFF G G P     +S PN F     H
Sbjct: 251 ALSSPASMQE-KNPNFLNQPNHMQAKQFKKAPHEFF-GNGNPVGSSSQSIPNLFIENSSH 308

Query: 290 TDLSGGNGNNFSGNFRNQHL---------------------LRPNNFPMQPNFPQDNFLP 328
             + G      S  ++  HL                     +R NN  + P F  DN  P
Sbjct: 309 ARIDGNGSMGSSSCYQPSHLAHARSDGNISMSNSSSYQPPHMRQNNMQLHPPFRPDNVFP 368

Query: 329 HNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSS 388
            NS NH   P+      P  P       P+I +L++S+YPNY  N  NFH Q+GE    S
Sbjct: 369 PNSLNHNPFPV---LGQPDLPA------PNISQLHISDYPNYPINPQNFHQQTGEFRPHS 419

Query: 389 YFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGP--EGPPSSSSSTTFPASSNGGW 446
             +S NPA+ N P K  +  GGQ+ + D+LN RH+R      P SS ++ T   S N GW
Sbjct: 420 --KSQNPANFNAPDKSRSHHGGQSFHHDALNKRHARDAVEYTPHSSFTTVTRSLSHNDGW 477

Query: 447 GTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNC 506
           G+QG+  PSEY+QGLIGVILLALNTLK+E+++P E NI +CIRYG+ ++ NTDV+ AL+ 
Sbjct: 478 GSQGQPPPSEYIQGLIGVILLALNTLKVEKIMPKEENIAECIRYGDLRNCNTDVKMALDS 537

Query: 507 AIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAI 565
           AIE +MV+K+ +G L LYV K EKLW C N L G PNQYPK +WD+I  FL S +GRSA+
Sbjct: 538 AIEHNMVVKQEIGELQLYVGKTEKLWKCVNPLGGYPNQYPKAIWDKIHYFLASPAGRSAM 597

Query: 566 MASQCR 571
           MAS+CR
Sbjct: 598 MASRCR 603

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543024|ref|XP_002512575.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548536|gb|EEF50027.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 324/570 (56%), Positives = 389/570 (68%), Gaps = 34/570 (5%)

Query: 21  AERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPA 80
           AE QYVTAK SVWWDIENCQVP++CDPH IAQNISSALVKMNYCGPVSISAYGDTNRI +
Sbjct: 88  AEPQYVTAKISVWWDIENCQVPRDCDPHAIAQNISSALVKMNYCGPVSISAYGDTNRINS 147

Query: 81  SVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQ 140
           +VQ ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALHQ
Sbjct: 148 AVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQ 207

Query: 141 LRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESL-----LHTNDFGTF 195
           LRMRRYNILLAQP +ASAPL+AAA+SVWLWTSLVAGGPP+   ESL      +T+   T 
Sbjct: 208 LRMRRYNILLAQPQRASAPLLAAARSVWLWTSLVAGGPPVREVESLPLGNISYTSTSDTL 267

Query: 196 N-PEDEPVQVSQP---------MGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPM 245
           + P  + V + QP         MGN  T  +  TK KGK  ++  NQ + S+ ++APV  
Sbjct: 268 HIPVTDTVHLKQPSDSYSENPHMGNQRTTYI--TKQKGKTNRRNLNQTNGSKTSNAPVWA 325

Query: 246 QESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFR 305
           QE + N  SYQ            P  +         +PNF P   + +  +  N   N +
Sbjct: 326 QEDQPNSNSYQ------------PGPYVPKVTVSGPSPNFNPGSPNFTWSDVTNVRDNHQ 373

Query: 306 NQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLN 363
           +     LRPN   MQP+F   N  P N Q H    +PP  NG  F   PP N+PDIG L+
Sbjct: 374 SHFTQPLRPNASAMQPDFAAGNMYPPNFQIHAPL-MPPRPNGTTFTSEPPTNVPDIGNLH 432

Query: 364 MSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHS 423
           +S YP    N PN   ++GE+   +  ++P   +LN  Q G+      +   +++N+R+ 
Sbjct: 433 ISGYPTSFHNPPNAQRRNGEQKHDAKRKAPKSVNLNNSQNGYTTQNNPSGYHETVNNRYP 492

Query: 424 RGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEA 482
            G E PPSSSS+T T  A  N  WG  G   PSEYVQGLIGVILLALNTLK E+++P+EA
Sbjct: 493 GGSEYPPSSSSATATEVAPVNVIWGMPGCPKPSEYVQGLIGVILLALNTLKSEKIMPTEA 552

Query: 483 NITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNP 541
           NI DCIRYG+PKHRNTD++KAL  AIEQ MV+K++LGA+ LYV KNEKLW C N + G+ 
Sbjct: 553 NIADCIRYGDPKHRNTDIKKALESAIEQQMVMKQNLGAVQLYVGKNEKLWRCVNPIGGSL 612

Query: 542 NQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
            +YPK  WD IQKFL SS+GRSAIM+SQCR
Sbjct: 613 KEYPKATWDEIQKFLASSAGRSAIMSSQCR 642

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572894|ref|XP_003554600.1| PREDICTED: uncharacterized protein LOC100794608 [Glycine max]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 315/579 (54%), Positives = 380/579 (65%), Gaps = 41/579 (7%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAK SVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSISAYGDT RI
Sbjct: 8   ANAEAQYATAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNAL 138
           PASVQHALSSTGI+LNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNAL 127

Query: 139 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFN-- 196
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL++GES    N   +    
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSS 187

Query: 197 ------PEDEPVQVSQP--------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVA 239
                 P     Q+ Q         +GNS   N GR  D++ +GK   +  +Q +  R  
Sbjct: 188 SDSLQIPVTSAAQIPQQVDSYSEVHVGNSKFPNGGRGFDSRYQGKTNWRNPSQSNGPRAM 247

Query: 240 S-APVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNP--NFFPCHTDLSGGN 296
           +  PV +Q+++N + +              P  F      P S P  N+   +TD    N
Sbjct: 248 NPPPVGLQDNRNRNNTNSHR----------PGNF--NPNVPLSGPATNYVHGNTDQLWSN 295

Query: 297 GNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPA 354
            +N  GN +  +   LRPNNFP+QP F   N    NS       +PP + GP F   P  
Sbjct: 296 NSNLQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSMVPPRTGGPNFTSGPHT 355

Query: 355 NLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASN 414
           N+PDIG LN+S YPN   N P    +SGE  ++S   +P+       + GH +     S 
Sbjct: 356 NVPDIGNLNISGYPNSVHNPPTVPQRSGELKQNSNNNAPHHLRSIDEKNGHMV---HNSG 412

Query: 415 RDSLNSRHSRGPE-GPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLK 473
               +  +  GPE  PP  ++      S NG WG+ G   PSEYVQGLIGV+LLALN+LK
Sbjct: 413 TKQSHQGYQHGPEYQPPPLAAMGNNNPSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLK 472

Query: 474 IERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWN 533
             +++P+EANITDCIRYG+PKHRNTDV+KAL  AIEQ+MV+K++LGALPLYV KN+KLW 
Sbjct: 473 NAKMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWK 532

Query: 534 CEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
           C N L G P Q+ KE WD I+KFLT+ +GRSA+M +QC+
Sbjct: 533 CVNPLGGTPKQHSKETWDEIEKFLTTPAGRSALMGTQCK 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821118|ref|XP_002878442.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata] gi|297324280|gb|EFH54701.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/616 (52%), Positives = 386/616 (62%), Gaps = 79/616 (12%)

Query: 10  TASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSI 69
           TASV+A MA   E QYV AKTSVWWDIENCQVPK  D H IAQNI+SAL KMNYCGPVSI
Sbjct: 13  TASVAAEMA---EAQYVRAKTSVWWDIENCQVPKGLDAHGIAQNITSALQKMNYCGPVSI 69

Query: 70  SAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS 129
           SAYGDTNRIP S+QHAL+STGIALNHVPAGVKDASDKKILVDMLFWA+DNPAP+N++LIS
Sbjct: 70  SAYGDTNRIPLSIQHALNSTGIALNHVPAGVKDASDKKILVDMLFWALDNPAPANFMLIS 129

Query: 130 GDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHT 189
           GDRDFSNALH LRMRRYN+LLAQP KAS PLV AAK+VWLWTSL AGG PL   ESL   
Sbjct: 130 GDRDFSNALHGLRMRRYNVLLAQPLKASVPLVHAAKTVWLWTSLSAGGIPLTRAESLQLV 189

Query: 190 NDFGTFNPEDEPVQVSQPM-GNSNTGRVSDTKLKGKYTKKPTN-QPSISRVASAPVPMQE 247
            +  T     E +  SQP+  N ++ RV D K K KY  K +N QP              
Sbjct: 190 ANQTTPTSGSE-IPSSQPLDSNFDSRRVFDNKPKVKYLSKQSNHQP-------------- 234

Query: 248 SKNNDYSYQFEHSQQKQFKKAPHEFFGGT-----------GEPRSNPNFFPCHT------ 290
             NN+Y  Q +++Q KQFKKAPHEFFG +             P SN N FP +       
Sbjct: 235 --NNNYRQQ-QNTQGKQFKKAPHEFFGSSQPSVSTSRPPPNLPSSNVNTFPGNVMTNPQN 291

Query: 291 ----------------------DLSGGNGNNFSGNFRNQH--LLRPNNFPMQPNFPQDNF 326
                                 D S  NGN+   + +N +    RP    M+P +  + F
Sbjct: 292 QNQYNYPPRPGPFPPRQPYPNPDPSWNNGNSIPNHAQNYYPNAGRPGASNMRPPY-GNVF 350

Query: 327 LPHNSQN------HGFRPIP-PSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHP 379
            P+  +N      +GFRP+  P ++GPRFP  P    PDI  L++S+YP+  QN PNF+P
Sbjct: 351 RPYRPENLNPPIGNGFRPMQHPRNDGPRFPSPPLLTAPDISNLSVSQYPSQTQNRPNFNP 410

Query: 380 QSGEELKSSYFESPNPASLNVPQKGHAMPGGQA---SNRDSLNSRHSRGPEGPPSSSSST 436
           Q  +E +     S    S N P KG+      A    +  +    +S  P  PPS     
Sbjct: 411 QVRQEFRPKMESS---YSHNGPNKGYIPRTSSAPVTHSTTTTGYTNSSSPGVPPSQPPVV 467

Query: 437 TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHR 496
           T   SSNG WGTQ    PSEYVQGLIGVIL ALN LK E+V+P+E NI+DCI+YG+PKHR
Sbjct: 468 TGSGSSNGMWGTQECPPPSEYVQGLIGVILHALNILKTEKVMPTEPNISDCIQYGDPKHR 527

Query: 497 NTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKF 555
            TD++KAL  A+E HM++  ++G L LY+ KNE LWNC N L  N  QYPK  WDRIQ+F
Sbjct: 528 GTDIKKALESALEHHMIVVTNVGKLKLYIGKNEALWNCVNPLGANAKQYPKATWDRIQEF 587

Query: 556 LTSSSGRSAIMASQCR 571
           LTSSSGR A  A+QCR
Sbjct: 588 LTSSSGRVAFTATQCR 603

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503990|ref|XP_003520782.1| PREDICTED: uncharacterized protein LOC100808926 [Glycine max]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 311/577 (53%), Positives = 375/577 (64%), Gaps = 39/577 (6%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAKTSVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSIS+YGDT RI
Sbjct: 8   TIAEAQYATAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISSYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNAL 138
           PASVQHALSSTGI+LNHVPAGVKDA D+KILVDMLFWA+DNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDARDEKILVDMLFWALDNPAPANYLLISGDRDFSNAL 127

Query: 139 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFN-- 196
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL++GES    N   +    
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSS 187

Query: 197 ------PEDEPVQVSQP--------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVA 239
                 P     Q+ Q         +GNS   N GR  D++ +GK   +  +Q +  R A
Sbjct: 188 SDSLQIPVTSATQIQQQVDSYSEVHVGNSKFTNGGRGFDSRYQGKTNWRNLSQSNGPR-A 246

Query: 240 SAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNN 299
             P+P+          Q   ++       P  F      P S  N    +TD    N +N
Sbjct: 247 MNPLPV--------VLQDNRNRNNANSSQPGNF--NLNVPSSATNHGHGNTDQLWSNNSN 296

Query: 300 FSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLP 357
             GN +  +   LRPNNFP+QP F   N    NS       +PP + GP F   P  N+P
Sbjct: 297 LQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSVVPPRTGGPNFTSGPHTNVP 356

Query: 358 DIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDS 417
           DIG L++S YPN   N P    +SGE  ++    +P        + GH +   Q S    
Sbjct: 357 DIGSLSISGYPNSVHNPPIVPQRSGELKQNPNSNAPLLLRSIDDKNGHMV---QNSGTQQ 413

Query: 418 LNSRHSRGPEGPPS--SSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIE 475
           L+  +  GPE  P   ++     P S NG WG+ G   PSEYVQGLIGV+LLALN+LK  
Sbjct: 414 LHQGYQHGPEYQPMPLAAMGNNNP-SGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNA 472

Query: 476 RVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCE 535
           +++P+EANITDCIRYG+PKHRNTDV+KAL  AIEQ+MV+K++LGALPLYV KN+KLW C 
Sbjct: 473 KMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCV 532

Query: 536 N-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
           N L G P Q+ KE WD+I KFLT+ +GRSA+M +QC+
Sbjct: 533 NPLGGTPKQHSKETWDQIGKFLTTPAGRSALMGTQCK 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511719|ref|XP_003626148.1| Limkain-b1 [Medicago truncatula] gi|355501163|gb|AES82366.1| Limkain-b1 [Medicago truncatula]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 310/594 (52%), Positives = 373/594 (62%), Gaps = 65/594 (10%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAK SVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSISAYGDT RI
Sbjct: 8   TNAEAQYTTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNAL 138
           PASVQHALSSTGI+LNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNAL 127

Query: 139 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPE 198
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWT+L+AGGPPL SG++   +N   +F P 
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLTSGDTQQLSNS--SFLPS 185

Query: 199 DEPVQV----------------SQPMGNSNT---GRVSDTKLKGKYTKKPTNQPSISRVA 239
            E +QV                    GNSN    GR  D++ +G+ T +  +QP+  +  
Sbjct: 186 SETLQVPVSNAAQTQQQGGPYSEIHAGNSNVQNGGRGFDSRYQGRPTWRNPSQPNGPKAM 245

Query: 240 S-APVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTD------- 291
           +  PV +Q+++NN  +Y+            P  +     +  S  NF   ++D       
Sbjct: 246 NPPPVGLQDNRNNVNNYR------------PGNYNPNVSQSGSTANFERANSDPLWSNNG 293

Query: 292 ---------LSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPS 342
                             +        LRPN FP+QP F   N    NS      P+PP 
Sbjct: 294 NQQGNHQNQQGNHQNQQGNHQNPYSQPLRPNGFPLQPPFAPSNSYSPNSHTFATTPVPPR 353

Query: 343 SNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFES-PNPASLNVP 401
           + G  F    P  +PDIG LN+S YPN   N P   PQ   +LK +   S P P      
Sbjct: 354 TVGNNFSTGSPRTVPDIGNLNISGYPNNGHN-PRTVPQRSGDLKPNPKSSAPLPVRSTNE 412

Query: 402 QKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST---TFPASSNGGWGTQGRLTPSEYV 458
           Q GH +         S    +  GPE  P+ S++      P  SNG WG+ G   PSEYV
Sbjct: 413 QNGHMV-------HSSTTQGYPHGPEYQPTHSTAMGNNKLP--SNGKWGSSGCPKPSEYV 463

Query: 459 QGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSL 518
           QGLIGV+LLALN+LK  +++P+E NITD IRYG+PKHRNTDV+KAL  A+EQ MV+K++L
Sbjct: 464 QGLIGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNL 523

Query: 519 GALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
           GAL LYV KN+KLW C N L GNP Q+ KE+WD IQ FLT+ +GRSAIM +QC+
Sbjct: 524 GALTLYVGKNDKLWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGRSAIMDTQCK 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533521|ref|XP_003535312.1| PREDICTED: uncharacterized protein LOC100794384 [Glycine max]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 301/570 (52%), Positives = 369/570 (64%), Gaps = 50/570 (8%)

Query: 24  QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQ 83
           QY TAKTSVWWDIENC VPK CDPH IAQNISSALV+ NYCGPVSISAYGDT RI A VQ
Sbjct: 15  QYSTAKTSVWWDIENCHVPKGCDPHAIAQNISSALVRTNYCGPVSISAYGDTTRITAVVQ 74

Query: 84  HALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRM 143
           HALSSTGI+LNHVPAGVKDASDKKILVDMLFWAVDNPAP+NYLLISGDRDFSNALHQLR+
Sbjct: 75  HALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRL 134

Query: 144 RRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGES-LLHTNDFGTFN-----P 197
           R+YNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL +GES  L  N+  + +     P
Sbjct: 135 RKYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLMNGESQQLGNNNIQSSSDTLPIP 194

Query: 198 EDEPVQVSQPMGN-----------SNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQ 246
               VQ+ Q MG+            NTGR  D++  GK   +    PS +    A  P  
Sbjct: 195 VSNAVQIPQHMGSFSEVHAGNQKFPNTGRQLDSRHHGKTNGR---NPSKTNGPKALNPAP 251

Query: 247 ESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTD-LSGGNGNNFSGNFR 305
           E+ +N  S Q  +            +        S PNF   + D + G NGN  S    
Sbjct: 252 ENYSNINSSQTGN------------YTHNVPPSGSTPNFICGNPDQMRGKNGNLHS---- 295

Query: 306 NQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMS 365
               LR N+FP+QP F  +N    N Q      +PP + GP F  AP  N+P+I    +S
Sbjct: 296 --QPLRSNSFPLQPPFIPNNSFSPNPQTFATSVVPPRTGGPSFSAAPLLNVPNISNRKIS 353

Query: 366 EYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRG 425
            YP+ A +       +G+  +SS   +P+P      Q GH +      N   L + H  G
Sbjct: 354 GYPSNAHDPRPVKQWNGDLKQSSNNNAPSPVKSIGEQTGHMV-----QNTQQLYNGHPHG 408

Query: 426 PEGPPSSSSST---TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEA 482
           PE  P+S ++      P   NG WG+ G   PSEYVQGLIGV+LLALNTLKIE+++P+EA
Sbjct: 409 PEYQPTSLTTMGNNNLPG--NGIWGSPGCPKPSEYVQGLIGVVLLALNTLKIEKIMPTEA 466

Query: 483 NITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNP 541
           NITDCIR G+PKHRNTDV+KAL  AIEQ MV+K+++GAL L++ KN+K+W C + + GNP
Sbjct: 467 NITDCIRCGDPKHRNTDVKKALENAIEQQMVVKQNVGALQLFIGKNDKVWKCVSPVGGNP 526

Query: 542 NQYPKEVWDRIQKFLTSSSGRSAIMASQCR 571
            ++ KE W+ I+KFL++ SGR  IM +QC+
Sbjct: 527 KKHSKETWNEIKKFLSTPSGRLVIMGTQCK 556

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	571
TAIR|locus:2098058	673	AT3G62200 "AT3G62200" [Arabido	0.432	0.367	0.675	6e-133
TAIR|locus:2098073	279	EDA32 "embryo sac development	0.292	0.598	0.796	9.2e-68
TAIR|locus:2100957	257	AT3G60940 "AT3G60940" [Arabido	0.280	0.622	0.508	1.9e-37
TAIR|locus:2178163	924	AT5G09840 [Arabidopsis thalian	0.376	0.232	0.337	1.2e-32
TAIR|locus:2176075	841	AT5G64710 "AT5G64710" [Arabido	0.301	0.204	0.401	1.2e-30
TAIR|locus:2159491	346	AT5G61180 "AT5G61180" [Arabido	0.138	0.228	0.683	1.9e-27
TAIR|locus:2053567	489	AT2G15560 [Arabidopsis thalian	0.280	0.327	0.408	5.9e-25
TAIR|locus:2081700	472	AT3G62850 [Arabidopsis thalian	0.266	0.322	0.347	1.4e-19
TAIR|locus:2097963	157	AT3G62050 "AT3G62050" [Arabido	0.210	0.764	0.372	4.8e-18
TAIR|locus:2165902	192	AT5G35640 "AT5G35640" [Arabido	0.211	0.630	0.344	3.2e-15

TAIR|locus:2098058 AT3G62200 "AT3G62200" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 6.0e-133, Sum P(2) = 6.0e-133
 Identities = 181/268 (67%), Positives = 201/268 (75%)

Query:    14 SAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYG 73
             S P A  AE QYV AKTSVWWDIENCQVP   D H IAQNI+SAL KMNYCGPVSISAYG
Sbjct:    15 SVP-AEMAEAQYVRAKTSVWWDIENCQVPNGLDAHGIAQNITSALQKMNYCGPVSISAYG 73

Query:    74 DTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRD 133
             DTNRIP ++QHAL+STGIALNHVPAGVKDASDKKILVDMLFWA+DNPAP+N++LISGDRD
Sbjct:    74 DTNRIPLTIQHALNSTGIALNHVPAGVKDASDKKILVDMLFWALDNPAPANFMLISGDRD 133

Query:   134 FSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFG 193
             FSNALH LRMRRYN+LLAQP KAS PLV AAK+VWLWTSL AGG PL   ESL    +  
Sbjct:   134 FSNALHGLRMRRYNVLLAQPLKASVPLVHAAKTVWLWTSLSAGGIPLTRAESLQLVANQT 193

Query:   194 TFNPEDEPVQVSQPM-GNSNTGRVSDTKLKGKYTKKPTN-QPSISRVASAPVPMQESKNN 251
             T  P  E +  SQP+  NS++ RV D K K KY  KP+N QP                NN
Sbjct:   194 TPKPGSE-IPSSQPLDSNSDSRRVFDNKSKVKYVPKPSNHQP----------------NN 236

Query:   252 DYSYQFEHSQQKQFKKAPHEFFGGTGEP 279
             +Y  Q +++Q KQFKKAPHEFFG T EP
Sbjct:   237 NYRQQQQNTQGKQFKKAPHEFFG-TSEP 263

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098073 EDA32 "embryo sac development arrest 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 133/167 (79%), Positives = 143/167 (85%)

Query:    18 ASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNR 77
             A TAE QYV AKTSVWWDIENCQVPK  D H IAQNISSAL KMNYCG VSISAYGDT+ 
Sbjct:    12 ADTAEAQYVMAKTSVWWDIENCQVPKGLDAHGIAQNISSALKKMNYCGRVSISAYGDTSG 71

Query:    78 IPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNA 137
             IP  +QHAL+STGI L+HVPAGVKDASDKKILVDMLFWA DNPAPSN +LISGDRDFSNA
Sbjct:    72 IPHVIQHALNSTGIELHHVPAGVKDASDKKILVDMLFWAFDNPAPSNIMLISGDRDFSNA 131

Query:   138 LHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGE 184
             LH+L +RRYNILLA P KASAPL  AA +VWLWTSL+AGG PL  G+
Sbjct:   132 LHKLSLRRYNILLAHPPKASAPLSQAATTVWLWTSLLAGGNPLIRGK 178

GO:0005634 "nucleus" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2100957 AT3G60940 "AT3G60940" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 86/169 (50%), Positives = 110/169 (65%)

Query:    25 YVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQH 84
             + TAKT VWWD EN  VP+  D + I  NI +AL +  Y GP+SI A+G+   IP  +Q 
Sbjct:    78 FSTAKTQVWWDTENSPVPRGFDAYRIGGNIRNALNENGYRGPISIRAFGNMRLIPTPIQL 137

Query:    85 ALSSTGIALNHVPAG-------VKDASDKKILVDMLFW-AVDNPAPSNYLLISGDRDFSN 136
             AL+STGI L HVP         +KDASD KI+  +L W A+++P PSN ++I+GDRD+S 
Sbjct:   138 ALTSTGIDLYHVPGNKVGSRKTIKDASDFKIIGHVLTWIALNHPQPSNLMVITGDRDYSV 197

Query:   137 ALHQLRMRRYNILLAQPHKA-SAPLVAAAKSVWLWTSLVAGGPPLASGE 184
             ALHQLR R +NILLA P  + S  L+ AA SVW W SL+ G  PLA  E
Sbjct:   198 ALHQLRCRSFNILLACPESSTSTALLRAATSVWKWNSLILGQKPLAENE 246

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2178163 AT5G09840 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 75/222 (33%), Positives = 128/222 (57%)

Query:    27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHAL 86
             + + SVWWD  +C +P + + + +AQ+I++A+      GP++I+A+GD  ++P S Q AL
Sbjct:    70 SVRVSVWWDFLSCNLPVDTNVYKVAQSITAAIRNSGIKGPITITAFGDVLQLPRSNQDAL 129

Query:    87 SSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRY 146
             S+TGI+L HVP G K+++D+ ++ D++ W   NP P++ LLIS D++F++ LH+LRM  Y
Sbjct:   130 SATGISLTHVPNGGKNSADRSLITDLMCWVSQNPPPAHLLLISSDKEFASVLHRLRMNNY 189

Query:   147 NILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNP--EDEPVQV 204
             NILLA    A   L +AA  +W W +L+ G     +G+      D G +N       + +
Sbjct:   190 NILLASKSSAPGVLCSAASIMWDWDALIKG--ECVTGKHFNQPPD-GPYNSWYGHYRIPL 246

Query:   205 SQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQ 246
               P   + T   S + +K +   +  N  ++  V   P+P +
Sbjct:   247 LDPFAIATTTEQSSSSVKIEELSESVNSNAV--VNLRPIPKE 286

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2176075 AT5G64710 "AT5G64710" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
 Identities = 71/177 (40%), Positives = 108/177 (61%)

Query:    10 TASVSAPMASTAERQYV----TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCG 65
             ++S+SA   S    QY     + +  VWWD ENC +P   +   +AQ I+SA+      G
Sbjct:    38 SSSISAHYTSLKRSQYEEDSRSVRVPVWWDFENCHLPSGANVFKLAQTITSAVRICGIKG 97

Query:    66 PVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNY 125
             P++I+AYGD  ++  + Q AL +TGI L HVP G K+++D+ ++ +++ W   NP P++ 
Sbjct:    98 PITITAYGDMIQLSRTNQEALFATGINLTHVPQGGKNSTDRSLITEIMCWVSQNPPPAHL 157

Query:   126 LLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSV-WLWTSLVAGGPPLA 181
              LIS D DF+N LH+LRMR YNILLA   + +  ++ +A S+ W W +LV G  P A
Sbjct:   158 FLISSDSDFANVLHRLRMRNYNILLACYEETTLGVLCSAASIMWDWDALVRGQNPTA 214

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2159491 AT5G61180 "AT5G61180" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.9e-27, P = 1.9e-27
 Identities = 54/79 (68%), Positives = 67/79 (84%)

Query:    20 TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
             +A+  +  AKTSVWWDIENC+VPK CDPH +AQ+I S L K N+CGP++I AYGDTN+IP
Sbjct:    72 SAKADFAGAKTSVWWDIENCEVPKGCDPHGVAQSIRSVLSKSNFCGPLTIYAYGDTNQIP 131

Query:    80 ASVQHALSSTGIALNHVPA 98
             +SVQ ALSSTG++LNHVPA
Sbjct:   132 SSVQQALSSTGVSLNHVPA 150

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053567 AT2G15560 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
 Identities = 67/164 (40%), Positives = 90/164 (54%)

Query:    17 MASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSAL-VKMNYCGPV-SISAYGD 74
             M +T          ++ WD+ENC VP +  P  +A NI  A+ +     GPV + SAYGD
Sbjct:    37 MIATQRHSSTDGPMAILWDMENCPVPSDVRPEDVASNIRMAIQLHPVISGPVVNFSAYGD 96

Query:    75 TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDF 134
              N  P  V+     TG+ L  VP G KDASDK IL+DM  + +DN  P+  +L+SGD DF
Sbjct:    97 FNGFPRRVREGCQRTGVKLIDVPNGRKDASDKAILIDMFLFVLDNKPPATIVLVSGDVDF 156

Query:   135 SNALHQLRMRRYNILLAQPHKA--SAPLVAAAKSVWLWTSLVAG 176
             + ALH L  R Y ++L  P     ++ L  A K VW W S+V G
Sbjct:   157 APALHILGQRGYTVILVIPSSVYVNSALSNAGKFVWDWHSIVHG 200

GO:0005634 "nucleus" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2081700 AT3G62850 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 57/164 (34%), Positives = 87/164 (53%)

Query:    20 TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
             TA+ +Y TA   VWWD+++C +P+  D   +  ++  A  K+ Y GPVSI+  GD N+ P
Sbjct:   230 TAKPEYATAPIVVWWDMKDCPIPEGYDARQVRPSLEGAFKKLGYSGPVSITGCGDHNKTP 289

Query:    80 ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD--RDFSNA 137
               +   LSSTG+ L H    + +    ++ ++M  W   NP P+  +LIS      F N 
Sbjct:   290 DHILRELSSTGVDLAH---SIDEVIYSRMFINMKQWKARNPPPATIMLISDGVVMMFENL 346

Query:   138 LHQLRMR-RYNILLA---QPHKASAPLVAAAKSVWLWTSLVAGG 177
             +  L    +YN+ LA   +P+K S  L +A    WLW SL+  G
Sbjct:   347 IADLLQETKYNLFLAYSYRPYKMSVLLTSAE---WLWKSLLVAG 387

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2097963 AT3G62050 "AT3G62050" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 4.8e-18, P = 4.8e-18
 Identities = 48/129 (37%), Positives = 75/129 (58%)

Query:    25 YVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQH 84
             +  A+T ++WDIE+C++P + +     +NI SAL    + G VS+ AYGDT  +      
Sbjct:     9 FAAAETGIFWDIEDCKIPDDLNAGDALKNIKSALSSDGHHGTVSVRAYGDTTGLD----- 63

Query:    85 ALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD--RDFSNALHQLR 142
                S GI LNH PAG + A   K+L D++ W+ ++P PS   LI GD  RDF + +  L+
Sbjct:    64 -FPSEGIKLNHFPAGERYARQTKMLEDIVSWSAEHPEPSTLFLIVGDTSRDFLDVVQLLK 122

Query:   143 MRR-YNILL 150
              ++ YN ++
Sbjct:   123 SKKNYNFII 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165902 AT5G35640 "AT5G35640" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 42/122 (34%), Positives = 68/122 (55%)

Query:    28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALS 87
             A TSVWWDI  C +P + D   ++  I  AL K+ Y G ++ +A G    +P      + 
Sbjct:    32 AATSVWWDINRCPLPNDVDVRRVSPFIKRALEKLGYTGALTTTAIGILTDVPHDFLTQVY 91

Query:    88 STGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYN 147
             S+GIA++H+P  V +    ++   +++W  DN  PSN +LIS +  FS+ L +L    YN
Sbjct:    92 SSGIAIHHIPL-VSETDIFELSSAVIYWTWDNLPPSNIMLISNELIFSSLLDKLCGFGYN 150

Query:   148 IL 149
             ++
Sbjct:   151 VV 152

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	571
cd10910	145	cd10910, limkain_b1_N_like, N-terminal LabA-like d	3e-69
pfam01936	141	pfam01936, NYN, NYN domain	1e-33
cd06167	151	cd06167, LabA_like, LabA_like proteins	4e-07

>gnl|CDD|199896 cd10910, limkain_b1_N_like, N-terminal LabA-like domain of limkain b1 and similar proteins

 Score =  219 bits (560), Expect = 3e-69
 Identities = 83/145 (57%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 29  KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSS 88
            T V+WDIENC VP   D   +  NI  AL K+ Y GPV+I+AYGD   +P  V   LSS
Sbjct: 1   PTGVFWDIENCPVPDGVDARRVGPNIKRALRKLGYSGPVTITAYGDLTDVPKDVLEELSS 60

Query: 89  TGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNI 148
           TGI+L HVP+G K+A+DKKILVD+L WA+DNP P+N +LISGD+DF++ L  LR R YN+
Sbjct: 61  TGISLAHVPSGDKNAADKKILVDILLWALDNPPPANIMLISGDKDFADTLSDLRERGYNV 120

Query: 149 LLAQPH-KASAPLVAAAKSVWLWTS 172
           LLAQP  +AS+ L  AA  VWLW S
Sbjct: 121 LLAQPPDQASSALSEAASEVWLWES 145

This eukaryotic subfamily of LabA-like domains contains the N-terminal domain of human limkain b1, a human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif, its - and similar - domain architectures are shared by several members of this family, and a function of these architectures in RNA binding or RNA metabolism has been suggested. The function of the N-terminal domain is unknown. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 145

>gnl|CDD|216797 pfam01936, NYN, NYN domain

 Score =  124 bits (313), Expect = 1e-33
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 14/146 (9%)

Query: 29  KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPAS-VQHALS 87
           + +V+ D ENC VP   D   + + I S          V   AYG+           ALS
Sbjct: 1   RVAVFIDGENCPVPAGIDYRKVLEEIKS------GGEVVRARAYGNWGDPKLRKFPDALS 54

Query: 88  STGIALNHVPA---GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR 144
           STGI + H P      K+A D  + VD L  A DN  P  ++L+SGD DF+  L +LR R
Sbjct: 55  STGIPVQHKPLTKGSGKNAVDVGLAVDALELAYDNN-PDTFVLVSGDGDFAPLLERLRER 113

Query: 145 RY--NILLAQPHKASAPLVAAAKSVW 168
               N+L A+P  + A L+ AA    
Sbjct: 114 GKRVNVLGAEPSTSDA-LINAADRFI 138

These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs. Length = 141

>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 32  VWWDIEN-------CQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPA---- 80
           V+ D EN           K  D   + + + S          V   AY +T R       
Sbjct: 3   VFVDGENLYIGLKRLLGLKRLDLEALLERLLSYA----DGRLVLARAYYNTARPDPSSPD 58

Query: 81  SVQHALSSTGIALNHVPA----GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSN 136
             Q AL   G  +  VP     G +   D  + +D L            +L+SGD DF  
Sbjct: 59  RFQEALRRLGFEVIRVPRLRGKGEEKGVDVALALDALE-LAYERRIDTIVLVSGDSDFVP 117

Query: 137 ALHQLRMR-RYNILLAQPHKASAPLVAAA 164
            L +LR R +  I++     AS+ L  AA
Sbjct: 118 LLERLRERGKRVIVVGFRRSASSALKNAA 146

A well conserved group of domains found in all three kingdoms of life, with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. Another member is the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls in the LabA_like family. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	571
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	99.8
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	99.61
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	99.33
COG1432	181	Uncharacterized conserved protein [Function unknow	97.65
PF04263	123	TPK_catalytic: Thiamin pyrophosphokinase, catalyti	81.1

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=99.80  E-value=3.2e-20  Score=162.85  Aligned_cols=133  Identities=33%  Similarity=0.500  Sum_probs=93.7

Q ss_pred             ceEEEEEccCCCCCCC---CChhhHHHHHHHHHHhcCccCce-EEEEEecCCCC-ChhHHHHhhhcCCceeeccC-----
Q 008270           29 KTSVWWDIENCQVPKN---CDPHTIAQNISSALVKMNYCGPV-SISAYGDTNRI-PASVQHALSSTGIALNHVPA-----   98 (571)
Q Consensus        29 kTaVFWDIENCPVP~G---~da~~Va~NIr~AL~klGY~GpV-TIrAYGD~s~i-p~~vl~aLsSSGISLihVPa-----   98 (571)
                      +|+||||+|||..+..   +++..+...|+.       .|++ .+++|+++..- ...++++|...||.+.+++.     
T Consensus         1 rvavfvD~eN~~~~~~~~~~~~~~l~~~i~~-------~~~~~~~~~y~~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~   73 (146)
T PF01936_consen    1 RVAVFVDGENLYIPLKRWDIDFERLLEEIRK-------YGPLVRIRAYGNWDDPNQKSFQEALQRAGIKVRHFPLRKRGG   73 (146)
T ss_dssp             EEEEEEEHHHHHHHHHSS-B-HHHHHHHHTT-------TEEEEEEEEEE----HHHHHHHHHHHHHT-EEEE------S-
T ss_pred             CEEEEEEhHhCchhhCCCCCCHHHHHHHHHh-------cCCeEEEEEEeeccccchhhHHHHHHhCeeeEEeeecccccc
Confidence            6899999999999765   565555555443       4667 79999995432 35577899999999999986     


Q ss_pred             CCccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhCCCeEEEec-cCCCChhHHhhcCeEEE
Q 008270           99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVWL  169 (571)
Q Consensus        99 G~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq-P~~AS~~L~aaAd~vWl  169 (571)
                      +.|+++|.+|.+||+.|+.+++. +++||||||.||.+++..|+.+|++|.++. +..++..|..+|+.++.
T Consensus        74 ~~k~~~D~~l~~d~~~~~~~~~~-d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~  144 (146)
T PF01936_consen   74 GGKKGVDVALAVDILELAYENPP-DTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFIS  144 (146)
T ss_dssp             --S---HHHHHHHHHHHG--GG--SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred             cccCCcHHHHHHHHHHHhhccCC-CEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence            57899999999999999988766 999999999999999999999999998888 56789999999998764

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>cd06167 LabA_like LabA_like proteins

Probab=99.61  E-value=1.5e-15  Score=135.68  Aligned_cols=135  Identities=24%  Similarity=0.217  Sum_probs=107.7

Q ss_pred             ceEEEEEccCCCCCCCCCh--hhHHHHHHHHHHhcCccCc-eEEEEEecCCC--CChhHHHHhhhcCCceeeccC----C
Q 008270           29 KTSVWWDIENCQVPKNCDP--HTIAQNISSALVKMNYCGP-VSISAYGDTNR--IPASVQHALSSTGIALNHVPA----G   99 (571)
Q Consensus        29 kTaVFWDIENCPVP~G~da--~~Va~NIr~AL~klGY~Gp-VTIrAYGD~s~--ip~~vl~aLsSSGISLihVPa----G   99 (571)
                      +++||||.||+..-.....  ..-...+...+...   +. ...++|+++..  ......++|...|+.+++++.    +
T Consensus         2 r~~ifiD~~Nl~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~   78 (149)
T cd06167           2 RVAVFIDGENLYYSLRDLGGKRFDYRKLLEFLRDG---GEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGS   78 (149)
T ss_pred             eEEEEEeHHHHHHHHHHhcCCCcCHHHHHHHHHhC---CeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCC
Confidence            6899999999975321110  11122233333322   44 46899999874  456788999999999999984    6


Q ss_pred             CccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhCCCeEEEeccC-CCChhHHhhcCeE
Q 008270          100 VKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAKSV  167 (571)
Q Consensus       100 ~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAqP~-~AS~~L~aaAd~v  167 (571)
                      .|+++|.+|.+||+.++.++ .++.|||||||.||.+++..|+++|++|+++.+. ..+..|..+|+.+
T Consensus        79 ~~~~~D~~l~~d~~~~~~~~-~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f  146 (149)
T cd06167          79 GKKGVDVALAIDALELAYKR-RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSRELRKAADRF  146 (149)
T ss_pred             cccCccHHHHHHHHHHhhhc-CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence            78999999999999999988 8899999999999999999999999999999977 7889999998854

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=99.33  E-value=1.8e-11  Score=115.98  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=106.5

Q ss_pred             hhcCCceEEEEEccCCCCCCCCChhhHHHHHHHHHHhcCccCceE-EEEEecCCCCChhHHHHhhhcCCceeeccCCCcc
Q 008270           24 QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVS-ISAYGDTNRIPASVQHALSSTGIALNHVPAGVKD  102 (571)
Q Consensus        24 rya~AkTaVFWDIENCPVP~G~da~~Va~NIr~AL~klGY~GpVT-IrAYGD~s~ip~~vl~aLsSSGISLihVPaG~Kn  102 (571)
                      +-..-+++||-|.+|.. +..+. .. ...|...|.+   .|.++ -++||++.. ...+++.|...|++.+.+    |+
T Consensus        19 ~~~~~riAvfID~~Nv~-~~~~~-~d-~~~i~~~ls~---~G~i~~~R~Y~~a~a-~~~l~~~l~~~Gf~pv~~----kG   87 (160)
T TIGR00288        19 RKGEKKIGLLVDGPNML-RKEFN-ID-LDEIREILSE---YGDIKIGKVLLNQYA-SDKLIEAVVNQGFEPIIV----AG   87 (160)
T ss_pred             cCCCCcEEEEEeCCccC-hhhhc-cC-HHHHHHHHHh---cCCeEEEEEEechhc-cHHHHHHHHHCCceEEEe----cC
Confidence            33356799999999996 32221 11 3456666665   47665 589999643 346788999999998754    55


Q ss_pred             chhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhCCCeEEEec-cCCCChhHHhhcCeEEEe
Q 008270          103 ASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVWLW  170 (571)
Q Consensus       103 AADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAq-P~~AS~~L~aaAd~vWlW  170 (571)
                      +.|..|.+|+|..++ .+..+.++|+|||.||.+++.+||++|..|+++. +..++.+|..+|+.++.-
T Consensus        88 ~~Dv~laIDame~~~-~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L  155 (160)
T TIGR00288        88 DVDVRMAVEAMELIY-NPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIIL  155 (160)
T ss_pred             cccHHHHHHHHHHhc-cCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeC
Confidence            899999999999886 4788999999999999999999999999999998 556888999999987654

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00025  Score=68.06  Aligned_cols=147  Identities=20%  Similarity=0.151  Sum_probs=97.8

Q ss_pred             CCceEEEEEccCCCCCCCCChhhHHHHHHHHHHhcCccCce-EEEEEe---cCCCCChhHHH--HhhhcCCceeeccC--
Q 008270           27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYG---DTNRIPASVQH--ALSSTGIALNHVPA--   98 (571)
Q Consensus        27 ~AkTaVFWDIENCPVP~G~da~~Va~NIr~AL~klGY~GpV-TIrAYG---D~s~ip~~vl~--aLsSSGISLihVPa--   98 (571)
                      ...+++|-|++|-+.-.. ....+.-.....|++......+ ....|.   +...+..-...  ++...|+.++-.+.  
T Consensus         5 ~~~i~~~id~~n~~~~~~-~~~~~~~d~~~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~   83 (181)
T COG1432           5 VDRIALFIDGKNLYASQR-KNLGILIDYRKLLRKELKRIYLYEAAPYTAEYGDIEIQEVFLNEYELRSDGFTVVTSNLDG   83 (181)
T ss_pred             ccceeEEeehhhhHHHHH-HhcCcccCHHHHHHHHhcCceEEEEeehhhccccchhhhheecHHHHhhcCcEEEeccccc
Confidence            347899999998654221 1111222233444443333333 233332   22333333322  66667776665443  


Q ss_pred             -----CCccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhCCCeEEEeccC-CCChhHHhhcCeEEEech
Q 008270           99 -----GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAKSVWLWTS  172 (571)
Q Consensus        99 -----G~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~RGYNILLAqP~-~AS~~L~aaAd~vWlWeS  172 (571)
                           -.|..-|..|.+||+..+ +++.-.+++|+|||.||.+++..++.+|..|+++.-. ..|..|..+|+.+..-.+
T Consensus        84 ~~~~~~~k~~vDv~la~D~~~l~-~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L~~  162 (181)
T COG1432          84 FTDLRITKGDVDVELAVDAMELA-DKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDLKS  162 (181)
T ss_pred             cCcccccccCcchhhHHHHHHhh-cccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEchh
Confidence                 234567889999999987 5678899999999999999999999999999998743 577889999998887776


Q ss_pred             hhc
Q 008270          173 LVA  175 (571)
Q Consensus       173 LLa  175 (571)
                      +..
T Consensus       163 ~~~  165 (181)
T COG1432         163 LEE  165 (181)
T ss_pred             hhh
Confidence            554

>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2

Probab=81.10  E-value=6.2  Score=36.30  Aligned_cols=76  Identities=25%  Similarity=0.460  Sum_probs=49.8

Q ss_pred             EEEecCCCCChhHHHHhhhcCCceeeccCCCccchhhHHHHHHHHhhhcCCCCceEEEEe--CCc---chHH--HHHHHH
Q 008270           70 SAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS--GDR---DFSN--ALHQLR  142 (571)
Q Consensus        70 rAYGD~s~ip~~vl~aLsSSGISLihVPaG~KnAADkkMLvDML~WAlDNPpPANIMLIS--GDr---DFS~--aL~~LR  142 (571)
                      -+.||...+..++++.+.+.|+.+++.|  .||..|-.+.++.+   ... .+..|+|+-  |-|   -++.  +|.+++
T Consensus        39 ~iiGDfDSi~~~~~~~~~~~~~~~~~~p--~kD~TD~e~Al~~~---~~~-~~~~i~v~Ga~GgR~DH~lanl~~l~~~~  112 (123)
T PF04263_consen   39 LIIGDFDSISPEVLEFYKSKGVEIIHFP--EKDYTDLEKALEYA---IEQ-GPDEIIVLGALGGRFDHTLANLNLLYKYK  112 (123)
T ss_dssp             EEEC-SSSS-HHHHHHHHHCTTEEEEE---STTS-HHHHHHHHH---HHT-TTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCChHHHHHHHhhccceeccc--ccccCHHHHHHHHH---HHC-CCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence            4789999998899999999999999999  68888887766655   333 344555543  322   2333  344455


Q ss_pred             hCCCeEEEe
Q 008270          143 MRRYNILLA  151 (571)
Q Consensus       143 ~RGYNILLA  151 (571)
                      +++.+|+|+
T Consensus       113 ~~~~~i~li  121 (123)
T PF04263_consen  113 KRGIKIVLI  121 (123)
T ss_dssp             TTTSEEEEE
T ss_pred             HcCCeEEEE
Confidence            679999886

7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	571
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	99.66

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=99.66  E-value=8.9e-17  Score=147.19  Aligned_cols=143  Identities=20%  Similarity=0.204  Sum_probs=111.0

Q ss_pred             CceEEEEEccCCCCCCCCChhhHHHHHHHHHHhcCccCce-EEEEEecCCC--CChhHHHHhhhcCCceeeccC------
Q 008270           28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVPA------   98 (571)
Q Consensus        28 AkTaVFWDIENCPVP~G~da~~Va~NIr~AL~klGY~GpV-TIrAYGD~s~--ip~~vl~aLsSSGISLihVPa------   98 (571)
                      .+++||||.+||..... +......+++..++.+...|.+ ..++||++..  .....+++|...|++++..|.      
T Consensus        10 ~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~   88 (165)
T 2qip_A           10 EKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDG   88 (165)
T ss_dssp             EEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSC
T ss_pred             CcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccCC
Confidence            47999999999985421 0000001233444444445666 5799998764  234577899999999988773      


Q ss_pred             CCccchhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHHhC-CCeEEEeccC-CCChhHHhhcCeEEEechhh
Q 008270           99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPH-KASAPLVAAAKSVWLWTSLV  174 (571)
Q Consensus        99 G~KnAADkkMLvDML~WAlDNPpPANIMLISGDrDFS~aL~~LR~R-GYNILLAqP~-~AS~~L~aaAd~vWlWeSLL  174 (571)
                      ..|++.|..|.+||+.++   +..+.++|+|||.||.+++..||++ |..|+++... .++..|..+|+.++.+++++
T Consensus        89 ~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~  163 (165)
T 2qip_A           89 SAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF  163 (165)
T ss_dssp             CCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred             ccCCCccHHHHHHHHHhh---ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence            368899999999999997   5689999999999999999999997 9999998855 47899999999999998876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00