Citrus Sinensis ID: 008294
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 571 | 2.2.26 [Sep-21-2011] | |||||||
| P34811 | 788 | Elongation factor G, chlo | yes | no | 0.959 | 0.695 | 0.821 | 0.0 | |
| Q2RQV7 | 692 | Elongation factor G OS=Rh | yes | no | 0.821 | 0.677 | 0.706 | 0.0 | |
| A7HWQ8 | 691 | Elongation factor G OS=Pa | yes | no | 0.819 | 0.677 | 0.703 | 0.0 | |
| Q2W2I8 | 694 | Elongation factor G OS=Ma | yes | no | 0.819 | 0.674 | 0.696 | 0.0 | |
| Q2G8Y3 | 690 | Elongation factor G OS=No | yes | no | 0.817 | 0.676 | 0.688 | 0.0 | |
| Q1GP96 | 697 | Elongation factor G OS=Sp | yes | no | 0.814 | 0.667 | 0.684 | 0.0 | |
| Q5NQ66 | 690 | Elongation factor G OS=Zy | yes | no | 0.817 | 0.676 | 0.699 | 0.0 | |
| B3QBY3 | 690 | Elongation factor G OS=Rh | yes | no | 0.817 | 0.676 | 0.675 | 0.0 | |
| Q6N4T4 | 690 | Elongation factor G OS=Rh | yes | no | 0.817 | 0.676 | 0.675 | 0.0 | |
| Q8KTB0 | 697 | Elongation factor G OS=Ri | yes | no | 0.812 | 0.665 | 0.679 | 0.0 |
| >sp|P34811|EFGC_SOYBN Elongation factor G, chloroplastic OS=Glycine max GN=FUSA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/565 (82%), Positives = 504/565 (89%), Gaps = 17/565 (3%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPASH---------FLGS 51
MAAE + + + +CN +NGSQRRP ++ R +G P P+SH F GS
Sbjct: 1 MAAESSLRVATPT-LCN--LNGSQRRPTTTTLSPLRFMGFRPRPSSHSLTSSSLSHFFGS 57
Query: 52 VCVFSPRSTSKLSPRS----RRQFSVFAMAAE-ESKRVIPLKDYRNIGIMAHIDAGKTTT 106
+ S S+S S RR FSVFAM+A+ ++KR +PLKDYRNIGIMAHIDAGKTTT
Sbjct: 58 TRIHSNSSSSYSSISRQHAPRRNFSVFAMSADGDAKRSVPLKDYRNIGIMAHIDAGKTTT 117
Query: 107 TERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166
TER+L+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+WNKHRINIIDTPGHV
Sbjct: 118 TERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHV 177
Query: 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFR 226
DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF+R
Sbjct: 178 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYR 237
Query: 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQK 286
TRDMIVTNLGAKPLV+QLP+G+EDNFKGV+DLV+ KAI+WSGEELGAKF DIP +LQ+
Sbjct: 238 TRDMIVTNLGAKPLVIQLPIGSEDNFKGVIDLVRNKAIVWSGEELGAKFDIVDIPEDLQE 297
Query: 287 MAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNK 346
AQ+YR+QMIE IVE DD+AME+YLEG EPDEETIKKLIRKGTI+ SFVPV+CGSAFKNK
Sbjct: 298 QAQDYRAQMIENIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNK 357
Query: 347 GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406
GVQPLLDAVVDYLPSPLDLPAMKG+DPENPEAT+ER ASDDEPFAGLAFKIMSDPFVGSL
Sbjct: 358 GVQPLLDAVVDYLPSPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSL 417
Query: 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466
TFVRVYAG L AGSYVLNANKGKKERIGRLLEMHANSR+DVKVALAGDIIALAGLKDTIT
Sbjct: 418 TFVRVYAGKLGAGSYVLNANKGKKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTIT 477
Query: 467 GETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEI 526
GETLCD D+PI+LERMDFPDPVIKVAIEPKTKAD+DKMA GLIKLAQEDPSFHFSRDEEI
Sbjct: 478 GETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEI 537
Query: 527 NQTVIEGMGELHLEIIVDRLKREFK 551
NQTVIEGMGELHLEIIVDRLKREFK
Sbjct: 538 NQTVIEGMGELHLEIIVDRLKREFK 562
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Glycine max (taxid: 3847) |
| >sp|Q2RQV7|EFG_RHORT Elongation factor G OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/470 (70%), Positives = 397/470 (84%), Gaps = 1/470 (0%)
Query: 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGI 141
KR PL YRNIGIMAHIDAGKTTTTER+L YTG+++KIGEVH+G ATMDWMEQEQERGI
Sbjct: 2 KRETPLDRYRNIGIMAHIDAGKTTTTERILCYTGKSHKIGEVHDGAATMDWMEQEQERGI 61
Query: 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR 201
TITSAATT +W ++R+NIIDTPGHVDFT+EVER+LRVLDGAI +FDSVAGVEPQSETVWR
Sbjct: 62 TITSAATTAFWRENRVNIIDTPGHVDFTIEVERSLRVLDGAIAVFDSVAGVEPQSETVWR 121
Query: 202 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKM 261
QADKY VPR+CFVNKMDR+GA+F+R DMI+ LGA PLV+ LP+G+E ++ GV+DL+KM
Sbjct: 122 QADKYKVPRMCFVNKMDRIGADFYRCVDMIIDRLGAVPLVINLPIGSESDYAGVIDLIKM 181
Query: 262 KAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321
KA+IW E+LGA F Y DIPA + A EYR +++ET VE+DD AME+YLEG EPDEET+
Sbjct: 182 KAVIWHSEDLGAHFDYVDIPAEYAEKAAEYREKLLETAVEMDDAAMEAYLEGVEPDEETL 241
Query: 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 381
KK IRKGTIA FVPVL GS+FKNKGVQP+LDAVVD+LPSPLD+PA+ G PE E +
Sbjct: 242 KKCIRKGTIAMKFVPVLNGSSFKNKGVQPMLDAVVDFLPSPLDVPAIHGLIPETHEDVI- 300
Query: 382 RAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHA 441
R SDDEPF+ LAFKIM+DPFVGSLTF RVY+GT+ +GSYV N K K+ERIGR+L MHA
Sbjct: 301 RGCSDDEPFSALAFKIMNDPFVGSLTFARVYSGTVESGSYVQNTVKDKRERIGRMLLMHA 360
Query: 442 NSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADI 501
N+RE++K A AGDI+A+ GLKDT TG+TL D P++LERM+FP+PVI+VA+EPKTKAD+
Sbjct: 361 NNREEIKWAGAGDIVAIVGLKDTTTGDTLSDTIKPVILERMEFPEPVIEVAVEPKTKADV 420
Query: 502 DKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
+KM L +LA EDPSF + D E QTVI+GMGELHLEI+VDR+KREFK
Sbjct: 421 EKMGMALARLAAEDPSFRVASDSESGQTVIKGMGELHLEILVDRMKREFK 470
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796) |
| >sp|A7HWQ8|EFG_PARL1 Elongation factor G OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/469 (70%), Positives = 396/469 (84%), Gaps = 1/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R L+DYRNIGIMAHIDAGKTTTTER+LFYTG ++KIGEVH+G ATMDWMEQEQERGIT
Sbjct: 3 RKTKLEDYRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W RINIIDTPGHVDFT+EVER+LRVLDGA+ +FDSVAGVEPQSETVWRQ
Sbjct: 63 ITSAATTCFWKDKRINIIDTPGHVDFTIEVERSLRVLDGAVTVFDSVAGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKY VPR+CFVNKMDR+GANF+R DMIVT LGA PLV QLP+G+E F+G++DL+KM+
Sbjct: 123 ADKYRVPRMCFVNKMDRMGANFYRCVDMIVTRLGAVPLVTQLPIGSEAEFEGLIDLLKMQ 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
I+W E LGA+F Y DI L++ A EY ++M+E VE+DD ME+YLEGNEPDE T+K
Sbjct: 183 EIVWKDESLGAEFEYRDIRPELKEQADEYHAKMVELAVEMDDAVMEAYLEGNEPDEATLK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
KLIRKGTI+ FVPVLCGSAFKNKGVQP+LDAVVD+LPSPL++ M+G DP+ E R
Sbjct: 243 KLIRKGTISRKFVPVLCGSAFKNKGVQPMLDAVVDFLPSPLEVERMQGIDPKTEEPDT-R 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
ASDDEP + LAFKIM+DPFVGSLTF R+Y+G ++ G+ VLN+ K +ERIGR+L+MHAN
Sbjct: 302 GASDDEPLSVLAFKIMNDPFVGSLTFCRIYSGVMTTGTGVLNSTKDNRERIGRMLQMHAN 361
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
RED+K A AGDI+A+AGLK+T TG+TLCD PI+LERM+FP+PVI+VA+EPKTKAD +
Sbjct: 362 HREDIKEAYAGDIVAVAGLKNTTTGDTLCDPLKPIILERMEFPEPVIEVAVEPKTKADQE 421
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM L +LAQEDPSF S D+E QTVI+GMGELHL+I+VDR++REFK
Sbjct: 422 KMGIALNRLAQEDPSFRVSVDQESGQTVIKGMGELHLDILVDRMRREFK 470
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881) |
| >sp|Q2W2I8|EFG_MAGSA Elongation factor G OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/471 (69%), Positives = 395/471 (83%), Gaps = 3/471 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL+ YRNIGIMAHIDAGKTTTTER+L+YTG++YKIGEVHEGTATMDWMEQEQERGIT
Sbjct: 3 RTTPLERYRNIGIMAHIDAGKTTTTERILYYTGKSYKIGEVHEGTATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W HR+NIIDTPGHVDFT+EVER+LRVLDGA+ +FDSVAGVEPQSETVWRQ
Sbjct: 63 ITSAATTAFWRDHRVNIIDTPGHVDFTIEVERSLRVLDGAVTVFDSVAGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKYGVPRICFVNKMDR+GANF+R DMIV LGA+PLV+ LP+G E + G+VDL++
Sbjct: 123 ADKYGVPRICFVNKMDRIGANFYRCVDMIVDRLGARPLVMHLPIGEESGYIGLVDLLRNV 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
A+IW E LGA+F + IPA+L + A +YR+Q+IET VE+DDEAME YL G EP E ++
Sbjct: 183 AVIWKDESLGAEFEDQPIPADLVEKAAQYRAQLIETAVEMDDEAMEQYLGGEEPSFEVLQ 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
IRKGTI+ +FVPVLCGSAFKNKGVQPLLDAV+DYLP+P+D+PA+KG E + +
Sbjct: 243 ACIRKGTISRTFVPVLCGSAFKNKGVQPLLDAVIDYLPAPVDIPAIKGVK-YGTEDEIAK 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
++DDEPFAGLAFKIM+DPFVGSLTFVRVY+G + +GSY+ N K K+ER+GR+L MHAN
Sbjct: 302 HSTDDEPFAGLAFKIMNDPFVGSLTFVRVYSGVVESGSYIQNTVKEKRERVGRMLLMHAN 361
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCD--ADHPILLERMDFPDPVIKVAIEPKTKAD 500
SRE++K A AGDI+A AGLKDT TG+TLCD ++LERM+FP+PVI+VA+EPK+KAD
Sbjct: 362 SREEIKEARAGDIVAFAGLKDTTTGDTLCDPTPSSLVVLERMEFPEPVIEVAVEPKSKAD 421
Query: 501 IDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
+KM L +LA EDPSF + D E QTVI+GMGELHLEI+VDR+KREFK
Sbjct: 422 QEKMGIALARLAAEDPSFRVTSDVESGQTVIKGMGELHLEILVDRMKREFK 472
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Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108) |
| >sp|Q2G8Y3|EFG_NOVAD Elongation factor G OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/469 (68%), Positives = 388/469 (82%), Gaps = 2/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL+ YRN GIMAHIDAGKTTTTER+L+YTG++YKIGEVHEG ATMDWMEQEQERGIT
Sbjct: 3 RSHPLERYRNFGIMAHIDAGKTTTTERILYYTGKSYKIGEVHEGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +WN HR+NIIDTPGHVDFT+EVER+LRVLDGA+ FD VAGVEPQSETVWRQ
Sbjct: 63 ITSAATTCFWNDHRLNIIDTPGHVDFTIEVERSLRVLDGAVAAFDGVAGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKYGVPR+C++NK+DR GANF+ I+ LGAKP V+ LP+GAE FKG+VDL+ +
Sbjct: 123 ADKYGVPRMCYINKLDRTGANFYYCVQTIIDRLGAKPAVLYLPIGAESEFKGLVDLINER 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
AIIW E LGA+F YEDIPA++ A EYR ++IE VE DD AME+YLEG PD T+K
Sbjct: 183 AIIWKDESLGAEFFYEDIPADMADKAAEYREKLIELAVEQDDAAMEAYLEGTMPDAATLK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
L+RKGT+A +FVPVLCGS+FKNKGVQ LLDAVVD++PSPLD+ ++G +P+ E R
Sbjct: 243 ALLRKGTLAHAFVPVLCGSSFKNKGVQALLDAVVDFMPSPLDIEDVQGINPDTDEPD-SR 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A SDD PF+ LAFKIM+DPFVGSLTF R+Y+GTLS GSY LN+ K KKE++GR+L MHAN
Sbjct: 302 ATSDDAPFSALAFKIMNDPFVGSLTFTRIYSGTLSKGSY-LNSVKNKKEKVGRMLLMHAN 360
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
SRED++ A AGDI+ALAGLK+T TG+TLC PI+LERM+FP+PVI++++EPKTKAD +
Sbjct: 361 SREDIEEAYAGDIVALAGLKETTTGDTLCSEKQPIILERMEFPEPVIELSVEPKTKADQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM L +LA EDPSF S D E QT+I+GMGELHLEI+VDR+KREFK
Sbjct: 421 KMGIALNRLAAEDPSFRVSTDHESGQTIIKGMGELHLEILVDRMKREFK 469
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238) |
| >sp|Q1GP96|EFG_SPHAL Elongation factor G OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/478 (68%), Positives = 392/478 (82%), Gaps = 13/478 (2%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL+ YRN GIMAHIDAGKTTTTER+L+YTG++YKIGEVH+G ATMDWMEQEQERGIT
Sbjct: 3 RSHPLERYRNFGIMAHIDAGKTTTTERILYYTGKSYKIGEVHDGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWN-------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
ITSAATT W +HR+NIIDTPGHVDFT+EVER+LRVLDGA+ FD VAGVEPQ
Sbjct: 63 ITSAATTCLWKADEGKGPEHRLNIIDTPGHVDFTIEVERSLRVLDGAVAAFDGVAGVEPQ 122
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQADKY VPR+CF+NK+DR GANF+ I+ LGA P V+ LP+GAE +FKG+
Sbjct: 123 SETVWRQADKYKVPRMCFINKLDRTGANFYYCVQTIIDRLGATPAVLYLPIGAESDFKGL 182
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
VDLV +AIIW E LGA+F YEDIPA+L A EYR +++E VE DDEAME+YLEGN
Sbjct: 183 VDLVNERAIIWKDESLGAEFFYEDIPADLADKAAEYREKLVELAVEQDDEAMEAYLEGNV 242
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDP-- 373
PD T+KKLIRKGT+ +FVPVLCGSAFKNKGVQPLLDAVVDYLPSPLD+P ++G +P
Sbjct: 243 PDVATLKKLIRKGTLNQAFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDIPDVQGINPTT 302
Query: 374 ENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERI 433
E P++ RA SD P + LAFKIM+DPFVGSLTF R+Y+GTL+ GSY LN+ K KKE+I
Sbjct: 303 EQPDS---RATSDSAPLSMLAFKIMNDPFVGSLTFARIYSGTLTKGSY-LNSVKDKKEKI 358
Query: 434 GRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAI 493
GR+L MHANSRED++ A AGDI+ALAGLK+T TG+TLC ++ PI+LERM+FP+PVI++++
Sbjct: 359 GRMLLMHANSREDIEEAFAGDIVALAGLKETTTGDTLCASNAPIILERMEFPEPVIELSV 418
Query: 494 EPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
EPKTKAD +KM L +LA EDPSF S D E QT+I+GMGELHL+I+VDR+KREFK
Sbjct: 419 EPKTKADQEKMGIALSRLAAEDPSFRVSTDHESGQTIIKGMGELHLDILVDRMKREFK 476
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655) |
| >sp|Q5NQ66|EFG_ZYMMO Elongation factor G OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/469 (69%), Positives = 391/469 (83%), Gaps = 2/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL YRNIGIMAHIDAGKTTTTER+LFYTG++YKIGEVHEGTATMDWMEQEQERGIT
Sbjct: 3 RKYPLDKYRNIGIMAHIDAGKTTTTERILFYTGKSYKIGEVHEGTATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +WN HRINIIDTPGHVDFT+EVER+LRVLDGA+ FD VAGVEPQSETVWRQ
Sbjct: 63 ITSAATTCFWNDHRINIIDTPGHVDFTIEVERSLRVLDGAVACFDGVAGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A+KY VPR+CFVNK+DR GANF R DMI LGA+PLV+ LP+G E +FKG+VDLV+ +
Sbjct: 123 AEKYHVPRMCFVNKLDRTGANFMRCVDMIRDRLGARPLVLYLPIGIESDFKGLVDLVENR 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
AIIW E LGAKF Y++IP + A+ R++MIE VE DD AME+YLEGNEPD +T+K
Sbjct: 183 AIIWLEESLGAKFEYQEIPEEYKAEAEAARAEMIEMAVEQDDAAMEAYLEGNEPDADTLK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
KLIRKGT+A FVPVLCGSAFKNKGVQPLLDAVVD+LPSPLD+P ++G + E R
Sbjct: 243 KLIRKGTLAQDFVPVLCGSAFKNKGVQPLLDAVVDFLPSPLDIPPVEGVKMDG-ETKDSR 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
SDDEPF+ LAFKIM+DPFVGSLTF R+Y+G L+ G+ VLN+ K K+E++GR+L MHAN
Sbjct: 302 KPSDDEPFSALAFKIMNDPFVGSLTFARIYSGKLTKGT-VLNSVKDKREKVGRMLLMHAN 360
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
SRED++ A AGDI+AL G+K+T TG+TLC + PI+LERM+FP+PVI+VA+EPKTKAD +
Sbjct: 361 SREDLEEAYAGDIVALVGMKETTTGDTLCAPNAPIILERMEFPEPVIEVAVEPKTKADQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM L +LA EDPSF + D E QT+I+GMGELHL+I+VDR+KREFK
Sbjct: 421 KMGLALNRLAAEDPSFRVASDFESGQTIIKGMGELHLDILVDRMKREFK 469
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203) |
| >sp|B3QBY3|EFG_RHOPT Elongation factor G OS=Rhodopseudomonas palustris (strain TIE-1) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/469 (67%), Positives = 387/469 (82%), Gaps = 2/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
RV ++DYRN GIMAHIDAGKTTTTER+LFYTG+++KIGEVHEG ATMDWM QEQERGIT
Sbjct: 3 RVHAIEDYRNFGIMAHIDAGKTTTTERILFYTGKSHKIGEVHEGAATMDWMTQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +WN R+NIIDTPGHVDFT+EVER+LRVLDGA+C+ DS GVEPQ+ETVWRQ
Sbjct: 63 ITSAATTAFWNGKRLNIIDTPGHVDFTIEVERSLRVLDGAVCVLDSNQGVEPQTETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
DKY VPRI F NKMD+ GA+FF+ IV LGAKP+ +QLP+G+E+NFKGV+DLV+MK
Sbjct: 123 GDKYKVPRIVFANKMDKTGADFFKCLQDIVDRLGAKPVAIQLPIGSENNFKGVIDLVRMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
A++W+ E LGAKF +IPA L A+EYR +MIE VELDD+AM +YLEGNEPDE T+K
Sbjct: 183 AVVWNDESLGAKFEDAEIPAELLDQAKEYREKMIEAAVELDDDAMSAYLEGNEPDEATLK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+LIRK + G+F PVLCGSAFKNKGVQPLLDAVVDYLPSPLD+PA+KGTD + E R
Sbjct: 243 RLIRKAVLTGAFYPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGTDDKGNEVV--R 300
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A D EP + LAFKIM DPFVG++TF R+Y+G L +G+ V+N+ + KKERIGR+L MHAN
Sbjct: 301 KADDKEPLSLLAFKIMDDPFVGTITFCRIYSGVLLSGTGVVNSTREKKERIGRMLLMHAN 360
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
+RED+K A AGDI+ALAGLK+ TG+TLCD +P++LE+M+FP+PVI++AIEPK+KAD +
Sbjct: 361 NREDIKEAYAGDIVALAGLKEARTGDTLCDPANPVILEKMEFPEPVIEIAIEPKSKADQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
K+ L KLA EDPSF S D E QT+++GMGELHL+I VD LKR +K
Sbjct: 421 KLGVALAKLAAEDPSFRVSTDLESGQTILKGMGELHLDIKVDILKRTYK 469
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Rhodopseudomonas palustris (strain TIE-1) (taxid: 395960) |
| >sp|Q6N4T4|EFG_RHOPA Elongation factor G OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/469 (67%), Positives = 387/469 (82%), Gaps = 2/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
RV ++DYRN GIMAHIDAGKTTTTER+LFYTG+++KIGEVHEG ATMDWM QEQERGIT
Sbjct: 3 RVHAIEDYRNFGIMAHIDAGKTTTTERILFYTGKSHKIGEVHEGAATMDWMTQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +WN R+NIIDTPGHVDFT+EVER+LRVLDGA+C+ DS GVEPQ+ETVWRQ
Sbjct: 63 ITSAATTAFWNGKRLNIIDTPGHVDFTIEVERSLRVLDGAVCVLDSNQGVEPQTETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
DKY VPRI F NKMD+ GA+FF+ IV LGAKP+ +QLP+G+E+NFKGV+DLV+MK
Sbjct: 123 GDKYKVPRIVFANKMDKTGADFFKCLQDIVDRLGAKPVAIQLPIGSENNFKGVIDLVRMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
A++W+ E LGAKF +IPA L A+EYR +MIE VELDD+AM +YLEGNEPDE T+K
Sbjct: 183 AVVWNDESLGAKFEDAEIPAELLDQAKEYREKMIEAAVELDDDAMSAYLEGNEPDEATLK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+LIRK + G+F PVLCGSAFKNKGVQPLLDAVVDYLPSPLD+PA+KGTD + E R
Sbjct: 243 RLIRKAVLTGAFYPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGTDDKGNEVV--R 300
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
A D EP + LAFKIM DPFVG++TF R+Y+G L +G+ V+N+ + KKERIGR+L MHAN
Sbjct: 301 KADDKEPLSLLAFKIMDDPFVGTITFCRIYSGVLLSGTGVVNSTREKKERIGRMLLMHAN 360
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
+RED+K A AGDI+ALAGLK+ TG+TLCD +P++LE+M+FP+PVI++AIEPK+KAD +
Sbjct: 361 NREDIKEAYAGDIVALAGLKEARTGDTLCDPANPVILEKMEFPEPVIEIAIEPKSKADQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
K+ L KLA EDPSF S D E QT+++GMGELHL+I VD LKR +K
Sbjct: 421 KLGVALAKLAAEDPSFRVSTDLESGQTILKGMGELHLDIKVDILKRTYK 469
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (taxid: 258594) |
| >sp|Q8KTB0|EFG_RICBE Elongation factor G OS=Rickettsia bellii GN=fusA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/465 (67%), Positives = 390/465 (83%), Gaps = 1/465 (0%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
L++ RNIGI AHIDAGKTTTTER+L+YTG+++KIGEVHEG ATMDWMEQEQERGITITSA
Sbjct: 5 LENIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQERGITITSA 64
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
ATT W +INIIDTPGHVDFT+EVER+LRVLDGA+ +FD VAGVEPQSETVWRQADKY
Sbjct: 65 ATTCRWQDKQINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKY 124
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPR+CFVNKMDR+GA+F+R DMI LGAKPLV+QLP+G E+NFKGVVDLVKM+A++W
Sbjct: 125 NVPRMCFVNKMDRMGADFYRCVDMIKDRLGAKPLVIQLPIGIEENFKGVVDLVKMQAVVW 184
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
E LGA+++Y++IP +++ A+EYR+ +++ +VELDD+ ME YL G E EE IKKLIR
Sbjct: 185 KDESLGAEYSYQEIPDDMKAKAEEYRANLLDMVVELDDKIMEKYLSGEEVTEEEIKKLIR 244
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
KGTI+ +F PVLCGSAFKNKGVQPLLDAVVDYLPSP+D+ +KG + E + S
Sbjct: 245 KGTISAAFYPVLCGSAFKNKGVQPLLDAVVDYLPSPIDIATVKGVEVSTGEEK-DFPISV 303
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
EPF+ LAFKIM+DPFVGSLTF+RVY+G +++G+ V+N K K+E+IGR+L MHAN+RED
Sbjct: 304 SEPFSALAFKIMNDPFVGSLTFIRVYSGKITSGTTVINTVKNKREKIGRMLLMHANNRED 363
Query: 447 VKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMAN 506
VK A AGDI+ALAGLKDT TG+TL D D ++LERM+FP+PVI++A+EPK+K D +KM
Sbjct: 364 VKEASAGDIVALAGLKDTTTGDTLSDEDKKVILERMEFPEPVIELAVEPKSKVDQEKMGL 423
Query: 507 GLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
L +LA EDPSF S D+E QTVI+GMGELHLEII+DR++REFK
Sbjct: 424 ALSRLAAEDPSFRTSTDQETGQTVIKGMGELHLEIIIDRMRREFK 468
|
Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Rickettsia bellii (taxid: 33990) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 571 | ||||||
| 255537029 | 789 | translation elongation factor G, putativ | 0.931 | 0.674 | 0.858 | 0.0 | |
| 449459756 | 777 | PREDICTED: elongation factor G, chloropl | 0.956 | 0.702 | 0.830 | 0.0 | |
| 359496425 | 775 | PREDICTED: elongation factor G, chloropl | 0.949 | 0.699 | 0.836 | 0.0 | |
| 449506160 | 777 | PREDICTED: LOW QUALITY PROTEIN: elongati | 0.956 | 0.702 | 0.829 | 0.0 | |
| 356563292 | 787 | PREDICTED: elongation factor G, chloropl | 0.959 | 0.696 | 0.822 | 0.0 | |
| 461999 | 788 | RecName: Full=Elongation factor G, chlor | 0.959 | 0.695 | 0.821 | 0.0 | |
| 297837151 | 782 | ATSCO1/ATSCO1/CPEF-G [Arabidopsis lyrata | 0.954 | 0.696 | 0.804 | 0.0 | |
| 357476969 | 779 | Translation elongation factor EF-G [Medi | 0.931 | 0.682 | 0.791 | 0.0 | |
| 18407650 | 783 | elongation factor EF-G [Arabidopsis thal | 0.956 | 0.697 | 0.802 | 0.0 | |
| 414586096 | 769 | TPA: putative translation elongation fac | 0.947 | 0.703 | 0.782 | 0.0 |
| >gi|255537029|ref|XP_002509581.1| translation elongation factor G, putative [Ricinus communis] gi|223549480|gb|EEF50968.1| translation elongation factor G, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/545 (85%), Positives = 497/545 (91%), Gaps = 13/545 (2%)
Query: 20 MNGSQRRPVPVPVTVPRSLGLLP-----------SPASHFLGSVCVFSPRSTSKLS--PR 66
+NGS RR T R LGL P S SHF+GSV + +T +S +
Sbjct: 19 VNGSPRRRTSSLSTPIRFLGLPPRASSISASSISSSLSHFMGSVRIGLQSTTKAISRQQQ 78
Query: 67 SRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG 126
RR FSVFAMAA+E+KR IPLKDYRNIGIMAHIDAGKTTTTERVL+YTGRNYKIGEVHEG
Sbjct: 79 RRRNFSVFAMAADEAKRAIPLKDYRNIGIMAHIDAGKTTTTERVLYYTGRNYKIGEVHEG 138
Query: 127 TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLF 186
TATMDWMEQEQERGITITSAATTT+WN HRINIIDTPGHVDFTLEVERALRVLDGAICLF
Sbjct: 139 TATMDWMEQEQERGITITSAATTTFWNNHRINIIDTPGHVDFTLEVERALRVLDGAICLF 198
Query: 187 DSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246
DSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMI+TNLGAKPLV+Q+PV
Sbjct: 199 DSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVIQIPV 258
Query: 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306
GAEDNF+GVVDLVKMKAI+WSGEELGAKFAY++IPA+LQ +A+EYR+Q+IETIVELDD+A
Sbjct: 259 GAEDNFQGVVDLVKMKAILWSGEELGAKFAYDNIPADLQDLAEEYRAQLIETIVELDDDA 318
Query: 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLP 366
ME YLEG EPDEETIKKLIRKGTI SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLP
Sbjct: 319 MEKYLEGVEPDEETIKKLIRKGTIGSSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLP 378
Query: 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN 426
AMKGTDPENPE T+ER ASDDEPFAGLAFKIMSDPFVGSLTFVRVY G L+AGSYVLNAN
Sbjct: 379 AMKGTDPENPEVTIERTASDDEPFAGLAFKIMSDPFVGSLTFVRVYGGKLTAGSYVLNAN 438
Query: 427 KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPD 486
KGKKERIGRLLEMHANSREDVKVALAGDI+ALAGLKDTITGETLCD D+PI+LERMDFPD
Sbjct: 439 KGKKERIGRLLEMHANSREDVKVALAGDIVALAGLKDTITGETLCDPDNPIVLERMDFPD 498
Query: 487 PVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRL 546
PVIKVAIEPKTKAD+DKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRL
Sbjct: 499 PVIKVAIEPKTKADVDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRL 558
Query: 547 KREFK 551
KREFK
Sbjct: 559 KREFK 563
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459756|ref|XP_004147612.1| PREDICTED: elongation factor G, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/556 (83%), Positives = 500/556 (89%), Gaps = 10/556 (1%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPV-PVPVTVPRSLGLLPSPA-SHFLGSVCVFSPR 58
MAAE + +S+VCNF NGSQRRP P P++ + L P+ SHF G+ +
Sbjct: 1 MAAE---SVRAASSVCNF--NGSQRRPAAPTPLSRTQFLLRSSRPSRSHFFGTNLRLTSS 55
Query: 59 STSKLS---PRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115
+S L +SR SVFAMAAE+ KR +PL+DYRNIGIMAHIDAGKTTTTER+L+YTG
Sbjct: 56 PSSNLCISRQQSRPNLSVFAMAAEDGKRSVPLEDYRNIGIMAHIDAGKTTTTERILYYTG 115
Query: 116 RNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175
RNYKIGEVHEG ATMDWMEQE+ERGITITSAATTT+WNKHRINIIDTPGHVDFTLEVERA
Sbjct: 116 RNYKIGEVHEGAATMDWMEQEKERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERA 175
Query: 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 235
LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICF+NKMDRLGANFFRTRDMIVTNL
Sbjct: 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFINKMDRLGANFFRTRDMIVTNL 235
Query: 236 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295
GAKPLV+QLP+G+EDNFKGVVDLV+MKAI+WSGEELGAKF YEDIP +L +AQ+YRSQM
Sbjct: 236 GAKPLVLQLPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFQYEDIPEDLVDLAQDYRSQM 295
Query: 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAV 355
IET+VELDDEAME+YLEG EPDE TIKKLIRKG I+ FVPVLCGSAFKNKGVQPLLDAV
Sbjct: 296 IETVVELDDEAMENYLEGIEPDEATIKKLIRKGAISACFVPVLCGSAFKNKGVQPLLDAV 355
Query: 356 VDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 415
VDYLPSP+DLP MKGTDPENPE +ER ASDDEPF+GLAFKIMSDPFVGSLTFVRVYAG
Sbjct: 356 VDYLPSPIDLPPMKGTDPENPELIVERVASDDEPFSGLAFKIMSDPFVGSLTFVRVYAGK 415
Query: 416 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADH 475
LSAGSYV+N+NKGKKERIGRLLEMHANSREDVKVALAGDI+ALAGLKDTITGETLCD DH
Sbjct: 416 LSAGSYVMNSNKGKKERIGRLLEMHANSREDVKVALAGDIVALAGLKDTITGETLCDPDH 475
Query: 476 PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMG 535
PI+LERMDFPDPVIKVAIEPKTKAD+DKMA GLIKLAQEDPSFHFSRDEEINQTVIEGMG
Sbjct: 476 PIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMG 535
Query: 536 ELHLEIIVDRLKREFK 551
ELHLEIIVDRLKREFK
Sbjct: 536 ELHLEIIVDRLKREFK 551
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496425|ref|XP_002264221.2| PREDICTED: elongation factor G, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/555 (83%), Positives = 510/555 (91%), Gaps = 13/555 (2%)
Query: 3 AERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPAS------HFLGSVCVFS 56
AE + ++ S++ +F+ GS+R P+P++ R L LPS S F+G+V + S
Sbjct: 2 AESVRMSATGSSLRSFS--GSRR---PIPLSPSRFL--LPSRHSSSSYRSQFVGNVHLRS 54
Query: 57 PRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGR 116
S + + R +FSVFAMAA+ESKR +PL DYRNIGIMAHIDAGKTTTTER+L+YTGR
Sbjct: 55 RLSKASNLQQQRGKFSVFAMAADESKRTVPLVDYRNIGIMAHIDAGKTTTTERILYYTGR 114
Query: 117 NYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERAL 176
NYKIGEVHEGTATMDWMEQEQERGITITSAATTT+WNKHRINIIDTPGHVDFTLEVERAL
Sbjct: 115 NYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERAL 174
Query: 177 RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236
RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG
Sbjct: 175 RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 234
Query: 237 AKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMI 296
AKPLV+QLP+GAEDNF+GV+DLVKM+A++WSGEELGAKFAY+DIP++L ++AQ+YRSQMI
Sbjct: 235 AKPLVIQLPIGAEDNFRGVIDLVKMQAVLWSGEELGAKFAYDDIPSDLLELAQDYRSQMI 294
Query: 297 ETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVV 356
ETIVELDDEAME YLEG EPDEETIKKLIRKGTI+ SFVPVLCGSAFKNKGVQPLLDAVV
Sbjct: 295 ETIVELDDEAMEGYLEGVEPDEETIKKLIRKGTISASFVPVLCGSAFKNKGVQPLLDAVV 354
Query: 357 DYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTL 416
DYLPSPLDLPAMKGTDPENPE T+ERAASD+EPFAGLAFKIMSDPFVGSLTFVRVYAG L
Sbjct: 355 DYLPSPLDLPAMKGTDPENPEVTVERAASDEEPFAGLAFKIMSDPFVGSLTFVRVYAGKL 414
Query: 417 SAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476
+AGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDI+ALAGLKDTITGETLCD ++P
Sbjct: 415 AAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIVALAGLKDTITGETLCDPENP 474
Query: 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGE 536
I+LERMDFPDPVIKVAIEPKTKAD+DKMA+GL+KLAQEDPSFHFSRDEEINQTVIEGMGE
Sbjct: 475 IVLERMDFPDPVIKVAIEPKTKADVDKMASGLVKLAQEDPSFHFSRDEEINQTVIEGMGE 534
Query: 537 LHLEIIVDRLKREFK 551
LHLEIIVDRLKREFK
Sbjct: 535 LHLEIIVDRLKREFK 549
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506160|ref|XP_004162669.1| PREDICTED: LOW QUALITY PROTEIN: elongation factor G, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/556 (82%), Positives = 499/556 (89%), Gaps = 10/556 (1%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPV-PVPVTVPRSLGLLPSPA-SHFLGSVCVFSPR 58
MAAE + +S+VCNF NGSQRRP P P++ + L P+ SHF G+ +
Sbjct: 1 MAAE---SVRAASSVCNF--NGSQRRPAAPTPLSRTQFLLRSSRPSRSHFFGTNLRLTSS 55
Query: 59 STSKLS---PRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115
+S L +SR SVFAMAAE+ KR +PL+DYRNIGIMAHIDAGKTTTTER+L+YTG
Sbjct: 56 PSSNLCISRQQSRPNLSVFAMAAEDGKRSVPLEDYRNIGIMAHIDAGKTTTTERILYYTG 115
Query: 116 RNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175
RNYKIGEVHEG ATMDWMEQE+ERGITITSAATTT+WNKHRINIIDTPGHVDFTLEVERA
Sbjct: 116 RNYKIGEVHEGAATMDWMEQEKERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERA 175
Query: 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL 235
LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICF+NKMDRLGANFFRTRDMIVTNL
Sbjct: 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFINKMDRLGANFFRTRDMIVTNL 235
Query: 236 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295
GAKPLV+QLP+G+EDNFKGVVDLV+MKAI+WSGEELGAKF YEDIP +L +AQ+YRSQM
Sbjct: 236 GAKPLVLQLPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFQYEDIPEDLVDLAQDYRSQM 295
Query: 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAV 355
IET+VELDDEAME+YLEG EPDE TIKKLIRKG I+ FVPVLCGSAFKNKGVQPLLDAV
Sbjct: 296 IETVVELDDEAMENYLEGIEPDEATIKKLIRKGAISACFVPVLCGSAFKNKGVQPLLDAV 355
Query: 356 VDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 415
VDYLPSP+DLP MKGTDPENPE +ER ASDDEPF+GLAFKIMSDPFVGSLTFVRVYAG
Sbjct: 356 VDYLPSPIDLPPMKGTDPENPELIVERVASDDEPFSGLAFKIMSDPFVGSLTFVRVYAGK 415
Query: 416 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADH 475
LSAGSYV+N+NKG KERIGRLLEMHANSREDVKVALAGDI+ALAGLKDTITGETLCD DH
Sbjct: 416 LSAGSYVMNSNKGXKERIGRLLEMHANSREDVKVALAGDIVALAGLKDTITGETLCDPDH 475
Query: 476 PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMG 535
PI+LERMDFPDPVIKVAIEPKTKAD+DKMA GLIKLAQEDPSFHFSRDEEINQTVIEGMG
Sbjct: 476 PIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMG 535
Query: 536 ELHLEIIVDRLKREFK 551
ELHLEIIVDRLKREFK
Sbjct: 536 ELHLEIIVDRLKREFK 551
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563292|ref|XP_003549898.1| PREDICTED: elongation factor G, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/564 (82%), Positives = 504/564 (89%), Gaps = 16/564 (2%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPASH---------FLGS 51
MAAE + + + +CN +NGSQRRP ++ R +G P P+SH F GS
Sbjct: 1 MAAESSLRVATPT-LCN--LNGSQRRPTTTTLSPLRFMGFRPRPSSHSLTSSSLSHFFGS 57
Query: 52 VCVFSPRSTSKLSPRS----RRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTT 107
+ S S+S S RR FSVFAM+A+++KR +PLKDYRNIGIMAHIDAGKTTTT
Sbjct: 58 TRIHSNSSSSYSSISRQHAPRRNFSVFAMSADDAKRSVPLKDYRNIGIMAHIDAGKTTTT 117
Query: 108 ERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167
ER+L+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+WNKHRINIIDTPGHVD
Sbjct: 118 ERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVD 177
Query: 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 227
FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF+RT
Sbjct: 178 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYRT 237
Query: 228 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKM 287
RDMIVTNLGAKPLV+QLP+G+EDNFKGV+DLV+ KAI+WSGEELGAKF DIP +LQ+
Sbjct: 238 RDMIVTNLGAKPLVIQLPIGSEDNFKGVIDLVRNKAIVWSGEELGAKFDIVDIPEDLQEQ 297
Query: 288 AQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKG 347
AQ+YR+QMIE IVE DD+AME+YLEG EPDEETIKKLIRKGTI+ SFVPV+CGSAFKNKG
Sbjct: 298 AQDYRAQMIENIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKG 357
Query: 348 VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407
VQPLLDAVVDYLPSPLDLPAMKG+DPENPEAT+ER ASDDEPFAGLAFKIMSDPFVGSLT
Sbjct: 358 VQPLLDAVVDYLPSPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSLT 417
Query: 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG 467
FVRVYAG L AGSYVLNANKGKKERIGRLLEMHANSR+DVKVALAGDIIALAGLKDTITG
Sbjct: 418 FVRVYAGKLGAGSYVLNANKGKKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTITG 477
Query: 468 ETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN 527
ETLCD D+PI+LERMDFPDPVIKVAIEPKTKAD+DKMA GLIKLAQEDPSFHFSRDEEIN
Sbjct: 478 ETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEIN 537
Query: 528 QTVIEGMGELHLEIIVDRLKREFK 551
QTVIEGMGELHLEIIVDRLKREFK
Sbjct: 538 QTVIEGMGELHLEIIVDRLKREFK 561
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|461999|sp|P34811.1|EFGC_SOYBN RecName: Full=Elongation factor G, chloroplastic; Short=EF-G; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/565 (82%), Positives = 504/565 (89%), Gaps = 17/565 (3%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPASH---------FLGS 51
MAAE + + + +CN +NGSQRRP ++ R +G P P+SH F GS
Sbjct: 1 MAAESSLRVATPT-LCN--LNGSQRRPTTTTLSPLRFMGFRPRPSSHSLTSSSLSHFFGS 57
Query: 52 VCVFSPRSTSKLSPRS----RRQFSVFAMAAE-ESKRVIPLKDYRNIGIMAHIDAGKTTT 106
+ S S+S S RR FSVFAM+A+ ++KR +PLKDYRNIGIMAHIDAGKTTT
Sbjct: 58 TRIHSNSSSSYSSISRQHAPRRNFSVFAMSADGDAKRSVPLKDYRNIGIMAHIDAGKTTT 117
Query: 107 TERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166
TER+L+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+WNKHRINIIDTPGHV
Sbjct: 118 TERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHV 177
Query: 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFR 226
DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF+R
Sbjct: 178 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYR 237
Query: 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQK 286
TRDMIVTNLGAKPLV+QLP+G+EDNFKGV+DLV+ KAI+WSGEELGAKF DIP +LQ+
Sbjct: 238 TRDMIVTNLGAKPLVIQLPIGSEDNFKGVIDLVRNKAIVWSGEELGAKFDIVDIPEDLQE 297
Query: 287 MAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNK 346
AQ+YR+QMIE IVE DD+AME+YLEG EPDEETIKKLIRKGTI+ SFVPV+CGSAFKNK
Sbjct: 298 QAQDYRAQMIENIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNK 357
Query: 347 GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406
GVQPLLDAVVDYLPSPLDLPAMKG+DPENPEAT+ER ASDDEPFAGLAFKIMSDPFVGSL
Sbjct: 358 GVQPLLDAVVDYLPSPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSL 417
Query: 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466
TFVRVYAG L AGSYVLNANKGKKERIGRLLEMHANSR+DVKVALAGDIIALAGLKDTIT
Sbjct: 418 TFVRVYAGKLGAGSYVLNANKGKKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTIT 477
Query: 467 GETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEI 526
GETLCD D+PI+LERMDFPDPVIKVAIEPKTKAD+DKMA GLIKLAQEDPSFHFSRDEEI
Sbjct: 478 GETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEI 537
Query: 527 NQTVIEGMGELHLEIIVDRLKREFK 551
NQTVIEGMGELHLEIIVDRLKREFK
Sbjct: 538 NQTVIEGMGELHLEIIVDRLKREFK 562
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837151|ref|XP_002886457.1| ATSCO1/ATSCO1/CPEF-G [Arabidopsis lyrata subsp. lyrata] gi|297332298|gb|EFH62716.1| ATSCO1/ATSCO1/CPEF-G [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/562 (80%), Positives = 502/562 (89%), Gaps = 17/562 (3%)
Query: 1 MAAE--RMITASCSSAVCNFAMNGSQRRPVPVPVT-VPRSLGLLPSPAS--------HFL 49
MAA+ R+ +++ S VCN +NGSQRRPV +P++ P LGL P +S FL
Sbjct: 1 MAADALRISSSTSGSLVCN--LNGSQRRPVLLPLSHRPTFLGLPPRASSSSISSSIPQFL 58
Query: 50 GSVCVFSPRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTER 109
G+ + +SKLS +++FSVFA A E+KR +PLKDYRNIGIMAHIDAGKTTTTER
Sbjct: 59 GTSRI--GLGSSKLS--HKKKFSVFAAAEGEAKRAVPLKDYRNIGIMAHIDAGKTTTTER 114
Query: 110 VLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169
+L+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+W+KHRINIIDTPGHVDFT
Sbjct: 115 ILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFT 174
Query: 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD 229
LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD
Sbjct: 175 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD 234
Query: 230 MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ 289
MIVTNLGAKPLV+Q+P+GAED FKGVVDLV+MKAI+WSGEELGAKF+YEDIPA+L+ +AQ
Sbjct: 235 MIVTNLGAKPLVLQIPIGAEDVFKGVVDLVRMKAIVWSGEELGAKFSYEDIPADLEDLAQ 294
Query: 290 EYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ 349
EYR+ M+E IV+LDDE ME+YLEG EPDE T+K+L+RKGTI G FVP+LCGSAFKNKGVQ
Sbjct: 295 EYRAAMMELIVDLDDEVMENYLEGVEPDEATVKRLVRKGTITGKFVPILCGSAFKNKGVQ 354
Query: 350 PLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409
PLLDAVVDYLPSP+++P M GTDPENPE T+ R DDEPFAGLAFKIMSDPFVGSLTFV
Sbjct: 355 PLLDAVVDYLPSPVEVPPMNGTDPENPEVTIIRKPDDDEPFAGLAFKIMSDPFVGSLTFV 414
Query: 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469
RVY+G +SAGSYVLNANKGKKERIGRLLEMHANSREDVKVAL GDIIALAGLKDTITGET
Sbjct: 415 RVYSGKISAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGET 474
Query: 470 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQT 529
L D ++P++LERMDFPDPVIKVAIEPKTKADIDKMA GLIKLAQEDPSFHFSRDEE+NQT
Sbjct: 475 LSDPENPVVLERMDFPDPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMNQT 534
Query: 530 VIEGMGELHLEIIVDRLKREFK 551
VIEGMGELHLEIIVDRLKREFK
Sbjct: 535 VIEGMGELHLEIIVDRLKREFK 556
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476969|ref|XP_003608770.1| Translation elongation factor EF-G [Medicago truncatula] gi|355509825|gb|AES90967.1| Translation elongation factor EF-G [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/572 (79%), Positives = 497/572 (86%), Gaps = 40/572 (6%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPASHFLGSVCVFSP--- 57
MAAE A+ S++C ++NGS R+P L SP F+G+ C F P
Sbjct: 1 MAAESFQVAT--SSLC--SLNGSHRKPT------------LLSPL-RFMGT-C-FRPVQS 41
Query: 58 -----------RSTSKLSP------RSRRQFSVFAMAA-EESKRVIPLKDYRNIGIMAHI 99
TS + P R+RR FSVFAM+ +E+KR +PLKDYRNIGIMAHI
Sbjct: 42 RSFSSSSLSQFFRTSPIKPTSPQLVRTRRNFSVFAMSTPDEAKRAVPLKDYRNIGIMAHI 101
Query: 100 DAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINI 159
DAGKTTTTER+LFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+W+ HRINI
Sbjct: 102 DAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDNHRINI 161
Query: 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219
IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD+YGVPRICFVNKMDR
Sbjct: 162 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDR 221
Query: 220 LGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYED 279
LGANFFRTRDMIVTNLGAKPLV+QLP+GAED+FKGV+DLV+MKAI+W GEELGAKF YED
Sbjct: 222 LGANFFRTRDMIVTNLGAKPLVLQLPIGAEDSFKGVIDLVRMKAIVWGGEELGAKFTYED 281
Query: 280 IPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLC 339
IP +L + AQ+YRSQMIETIVELDDEAME+YLEG EPDE TIKKLIRKG+IA +FVPV+C
Sbjct: 282 IPVDLLEQAQDYRSQMIETIVELDDEAMENYLEGVEPDEATIKKLIRKGSIAATFVPVMC 341
Query: 340 GSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399
GSAFKNKGVQPLLDAVVDYLPSPLD+P MKGTDPENPEAT+ER A DDEPF+GLAFKIMS
Sbjct: 342 GSAFKNKGVQPLLDAVVDYLPSPLDVPPMKGTDPENPEATIERIAGDDEPFSGLAFKIMS 401
Query: 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA 459
D FVGSLTFVRVY+G L+AGSYVLN+NKGKKERIGRLLEMHANSREDVKVAL GDI+ALA
Sbjct: 402 DSFVGSLTFVRVYSGKLTAGSYVLNSNKGKKERIGRLLEMHANSREDVKVALTGDIVALA 461
Query: 460 GLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFH 519
GLKDTITGETLCD + P++LERMDFPDPVIK+AIEPKTKADIDKMA GL+KLAQEDPSFH
Sbjct: 462 GLKDTITGETLCDPESPVVLERMDFPDPVIKIAIEPKTKADIDKMAAGLVKLAQEDPSFH 521
Query: 520 FSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
FSRDEEINQTVIEGMGELHLEIIVDRLKRE+K
Sbjct: 522 FSRDEEINQTVIEGMGELHLEIIVDRLKREYK 553
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18407650|ref|NP_564801.1| elongation factor EF-G [Arabidopsis thaliana] gi|6630460|gb|AAF19548.1|AC007190_16 F23N19.11 [Arabidopsis thaliana] gi|23297147|gb|AAN13104.1| unknown protein [Arabidopsis thaliana] gi|90855593|tpg|DAA05753.1| TPA_exp: elongation factor G [Arabidopsis thaliana] gi|332195879|gb|AEE34000.1| elongation factor EF-G [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/562 (80%), Positives = 500/562 (88%), Gaps = 16/562 (2%)
Query: 1 MAAE--RMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPAS---------HFL 49
MAA+ R+ ++S S VCN +NGSQRRPV +P++ + LP AS FL
Sbjct: 1 MAADALRISSSSSGSLVCN--LNGSQRRPVLLPLSHRATFLGLPPRASSSSISSSIPQFL 58
Query: 50 GSVCVFSPRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTER 109
G+ + +SKLS + ++QFSVFA A E+KR +PLKDYRNIGIMAHIDAGKTTTTER
Sbjct: 59 GTSRI--GLGSSKLS-QKKKQFSVFAAAEAEAKRAVPLKDYRNIGIMAHIDAGKTTTTER 115
Query: 110 VLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169
+L+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+W+KHRINIIDTPGHVDFT
Sbjct: 116 ILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFT 175
Query: 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD 229
LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD
Sbjct: 176 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRD 235
Query: 230 MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ 289
MIVTNLGAKPLV+Q+P+GAED FKGVVDLV+MKAI+WSGEELGAKF+YEDIP +L+ +AQ
Sbjct: 236 MIVTNLGAKPLVLQIPIGAEDVFKGVVDLVRMKAIVWSGEELGAKFSYEDIPEDLEDLAQ 295
Query: 290 EYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ 349
EYR+ M+E IV+LDDE ME+YLEG EPDE T+K+L+RKGTI G FVP+LCGSAFKNKGVQ
Sbjct: 296 EYRAAMMELIVDLDDEVMENYLEGVEPDEATVKRLVRKGTITGKFVPILCGSAFKNKGVQ 355
Query: 350 PLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409
PLLDAVVDYLPSP+++P M GTDPENPE T+ R DDEPFAGLAFKIMSDPFVGSLTFV
Sbjct: 356 PLLDAVVDYLPSPVEVPPMNGTDPENPEITIIRKPDDDEPFAGLAFKIMSDPFVGSLTFV 415
Query: 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469
RVY+G +SAGSYVLNANKGKKERIGRLLEMHANSREDVKVAL GDIIALAGLKDTITGET
Sbjct: 416 RVYSGKISAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGET 475
Query: 470 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQT 529
L D ++P++LERMDFPDPVIKVAIEPKTKADIDKMA GLIKLAQEDPSFHFSRDEE+NQT
Sbjct: 476 LSDPENPVVLERMDFPDPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMNQT 535
Query: 530 VIEGMGELHLEIIVDRLKREFK 551
VIEGMGELHLEIIVDRLKREFK
Sbjct: 536 VIEGMGELHLEIIVDRLKREFK 557
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414586096|tpg|DAA36667.1| TPA: putative translation elongation factor family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/552 (78%), Positives = 473/552 (85%), Gaps = 11/552 (1%)
Query: 1 MAAERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSL-GLLPSPASHFLGSVCVFSPRS 59
MAAE + A ++ S RRP V+ R L G P A F + +
Sbjct: 1 MAAEAPVRAPATAR--------SSRRPAAAVVSASRLLLGHRPFLAPRFAAGRAAVAGPA 52
Query: 60 TSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK 119
R + SV MA+ S R +PL DYRNIGIMAHIDAGKTTTTER+L+YTGRNYK
Sbjct: 53 AGLRPRPRRPRLSVVVMAS--SDRQVPLHDYRNIGIMAHIDAGKTTTTERILYYTGRNYK 110
Query: 120 IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVL 179
IGEVHEGTATMDWMEQEQERGITITSAATT +WNKHRINIIDTPGHVDFTLEVERALRVL
Sbjct: 111 IGEVHEGTATMDWMEQEQERGITITSAATTAFWNKHRINIIDTPGHVDFTLEVERALRVL 170
Query: 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239
DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV NLGAKP
Sbjct: 171 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVANLGAKP 230
Query: 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299
LV+QLP+G+EDNF+GVVDLV+MKAI+W+GEELGAKF Y+DIPA+LQ+MAQ+YR QM+ETI
Sbjct: 231 LVIQLPIGSEDNFQGVVDLVRMKAIVWTGEELGAKFEYKDIPADLQEMAQDYRVQMLETI 290
Query: 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359
+ELDDE ME YLEG EPDEET+KKLIRKG I+ SFVPVLCGSAFKNKGVQPLLDAVVDYL
Sbjct: 291 IELDDEVMEKYLEGTEPDEETVKKLIRKGAISASFVPVLCGSAFKNKGVQPLLDAVVDYL 350
Query: 360 PSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAG 419
PSPLDLP+MKGTDPE+PE ER SDDEPF+GLAFKIM+DPFVGSLTFVR+Y+G L AG
Sbjct: 351 PSPLDLPSMKGTDPEDPEIIFERQPSDDEPFSGLAFKIMTDPFVGSLTFVRIYSGKLIAG 410
Query: 420 SYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479
SYVLNANK KKERIGRLLEMHANS+ED+ VA+ GDI+ALAGLKDTITGETLCD D P++L
Sbjct: 411 SYVLNANKDKKERIGRLLEMHANSKEDIPVAVTGDIVALAGLKDTITGETLCDPDKPVVL 470
Query: 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHL 539
ERM+FPDPVIKVAIEPKTKAD DKMA GLIKLAQEDPSFHFSRDEE NQTVIEGMGELHL
Sbjct: 471 ERMEFPDPVIKVAIEPKTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHL 530
Query: 540 EIIVDRLKREFK 551
+IIVDRLKREFK
Sbjct: 531 DIIVDRLKREFK 542
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 571 | ||||||
| TAIR|locus:2026212 | 783 | SCO1 "SNOWY COTYLEDON 1" [Arab | 0.959 | 0.699 | 0.778 | 1.1e-229 | |
| TIGR_CMR|GSU_2860 | 692 | GSU_2860 "translation elongati | 0.819 | 0.676 | 0.656 | 6.3e-163 | |
| TIGR_CMR|CHY_2313 | 692 | CHY_2313 "translation elongati | 0.817 | 0.674 | 0.641 | 6.5e-161 | |
| TIGR_CMR|CJE_0542 | 691 | CJE_0542 "translation elongati | 0.817 | 0.675 | 0.628 | 2.3e-158 | |
| TIGR_CMR|APH_1033 | 690 | APH_1033 "translation elongati | 0.812 | 0.672 | 0.625 | 2.6e-157 | |
| TIGR_CMR|ECH_0961 | 690 | ECH_0961 "translation elongati | 0.810 | 0.671 | 0.618 | 6.3e-156 | |
| UNIPROTKB|P0A6M8 | 704 | fusA "elongation factor G" [Es | 0.819 | 0.664 | 0.608 | 1e-155 | |
| TIGR_CMR|CBU_0235 | 699 | CBU_0235 "translation elongati | 0.816 | 0.666 | 0.621 | 1.7e-155 | |
| TIGR_CMR|SPO_3499 | 705 | SPO_3499 "translation elongati | 0.821 | 0.665 | 0.605 | 2.1e-155 | |
| TIGR_CMR|NSE_0687 | 692 | NSE_0687 "translation elongati | 0.812 | 0.670 | 0.611 | 2.4e-154 |
| TAIR|locus:2026212 SCO1 "SNOWY COTYLEDON 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2216 (785.1 bits), Expect = 1.1e-229, P = 1.1e-229
Identities = 436/560 (77%), Positives = 483/560 (86%)
Query: 1 MAAE--RMITASCSSAVCNFAMNGSQXXXXXXXXXXXXS-LGLLPSPASHFLGS-VCVFS 56
MAA+ R+ ++S S VCN +NGSQ + LGL P +S + S + F
Sbjct: 1 MAADALRISSSSSGSLVCN--LNGSQRRPVLLPLSHRATFLGLPPRASSSSISSSIPQFL 58
Query: 57 PRS-----TSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVL 111
S +SKLS + ++QFSVFA A E+KR +PLKDYRNIGIMAHIDAGKTTTTER+L
Sbjct: 59 GTSRIGLGSSKLSQK-KKQFSVFAAAEAEAKRAVPLKDYRNIGIMAHIDAGKTTTTERIL 117
Query: 112 FYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171
+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT+W+KHRINIIDTPGHVDFTLE
Sbjct: 118 YYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLE 177
Query: 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMI 231
VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMI
Sbjct: 178 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMI 237
Query: 232 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY 291
VTNLGAKPLV+Q+P+GAED FKGVVDLV+MKAI+WSGEELGAKF+YEDIP +L+ +AQEY
Sbjct: 238 VTNLGAKPLVLQIPIGAEDVFKGVVDLVRMKAIVWSGEELGAKFSYEDIPEDLEDLAQEY 297
Query: 292 RSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPL 351
R+ M+E IV+LDDE ME+YLEG EPDE T+K+L+RKGTI G FVP+LCGSAFKNKGVQPL
Sbjct: 298 RAAMMELIVDLDDEVMENYLEGVEPDEATVKRLVRKGTITGKFVPILCGSAFKNKGVQPL 357
Query: 352 LDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRV 411
LDAVVDYLPSP+++P M GTDPENPE T+ R DDEPFAGLAFKIMSDPFVGSLTFVRV
Sbjct: 358 LDAVVDYLPSPVEVPPMNGTDPENPEITIIRKPDDDEPFAGLAFKIMSDPFVGSLTFVRV 417
Query: 412 YAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLC 471
Y+G +SAGSYVLNANKGKKERIGRLLEMHANSREDVKV KDTITGETL
Sbjct: 418 YSGKISAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLS 477
Query: 472 DADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVI 531
D ++P++LERMDFPDPVIKVAIEPKTKADIDKMA GLIKLAQEDPSFHFSRDEE+NQTVI
Sbjct: 478 DPENPVVLERMDFPDPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMNQTVI 537
Query: 532 EGMGELHLEIIVDRLKREFK 551
EGMGELHLEIIVDRLKREFK
Sbjct: 538 EGMGELHLEIIVDRLKREFK 557
|
|
| TIGR_CMR|GSU_2860 GSU_2860 "translation elongation factor G" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1586 (563.4 bits), Expect = 6.3e-163, P = 6.3e-163
Identities = 308/469 (65%), Positives = 362/469 (77%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R + L+ RNIGIMAHIDAGKTTTTER+L+YTG +KIGEVHEG ATMDWMEQEQERGIT
Sbjct: 3 RQVSLEKTRNIGIMAHIDAGKTTTTERILYYTGVTHKIGEVHEGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W HR+NIIDTPGHVDFT+EVER+LRVLDGA+ +F SV GVEPQSETVWRQ
Sbjct: 63 ITSAATTCFWGDHRVNIIDTPGHVDFTIEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKY VPRI F+NKMDR+GA+FFR MI L A P+ +QLP+GAED ++GVVDLV+MK
Sbjct: 123 ADKYRVPRIAFINKMDRVGADFFRGVGMIRDRLKANPVPIQLPIGAEDTYRGVVDLVEMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
AIIW E LGAK+ +IPA+L +MAQEYR ++IE I DD ME YL G E + IK
Sbjct: 183 AIIWDEESLGAKYHEAEIPADLAEMAQEYREKLIEEIATFDDALMEKYLGGEELTTDEIK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+RK TI PV+CGSAFKNKGVQ LLD+VV YLPSPLD+PA+ G D ++ E + R
Sbjct: 243 AAVRKATIDIQICPVICGSAFKNKGVQNLLDSVVAYLPSPLDIPAITGIDAKSGEE-ITR 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
ASDDEPF+ LAFKIM+DPFVG L F RVY+G L++GSYV N+ K KKERIGRLL+MHAN
Sbjct: 302 KASDDEPFSALAFKIMTDPFVGQLCFFRVYSGVLNSGSYVYNSTKEKKERIGRLLKMHAN 361
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
RE++K K T TG+TLC D P++LE ++FP+PVI +AIEPKTKAD +
Sbjct: 362 KREEIKEVYAGDIAAAVGLKYTTTGDTLCPEDSPVVLESIEFPEPVIAIAIEPKTKADQE 421
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
K+ L KLA EDPSF DEE QT+I GMGELHLEIIVDRL REFK
Sbjct: 422 KLGISLQKLASEDPSFRVRTDEETGQTIISGMGELHLEIIVDRLMREFK 470
|
|
| TIGR_CMR|CHY_2313 CHY_2313 "translation elongation factor G" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1567 (556.7 bits), Expect = 6.5e-161, P = 6.5e-161
Identities = 301/469 (64%), Positives = 363/469 (77%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL+ RNIGIMAHIDAGKTTTTER+LFYTG+ +K+GEVH+G ATMDWM QEQERGIT
Sbjct: 3 REYPLERTRNIGIMAHIDAGKTTTTERILFYTGKVHKMGEVHDGAATMDWMVQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W HRINIIDTPGHVDFT+EVER+LRVLDGA+ +F +V GVEPQSETVWRQ
Sbjct: 63 ITSAATTCFWKNHRINIIDTPGHVDFTVEVERSLRVLDGAVAIFCAVGGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKYGVPRI +VNKMDR+GANFF I LGA P+ +QLP+G ED F+GV+DL++ K
Sbjct: 123 ADKYGVPRIAYVNKMDRMGANFFEVVRQIKERLGANPVPIQLPIGNEDTFQGVIDLIENK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
AII++ ++LG + A +IPA + + EYR +++E E D+E M YL+G E E I+
Sbjct: 183 AIIYT-DDLGTQLAEAEIPAEMLDLVAEYREKVMEAAAEADEELMLKYLDGEELTPEEIR 241
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+RK TIA VPVLCGS+FKNKGVQPLLDA+V YLPSP+D+PA++G +PE + R
Sbjct: 242 AGLRKATIAVKVVPVLCGSSFKNKGVQPLLDAIVYYLPSPVDIPAVRGINPETGDEDF-R 300
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
ASD EPFA LAFKIM+DP+VG LTF RVY+G L AGSYVLN+ KGKKERIGRLL MHAN
Sbjct: 301 KASDSEPFAALAFKIMADPYVGKLTFFRVYSGVLKAGSYVLNSTKGKKERIGRLLRMHAN 360
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
RE++ KDT TG+T+CD HPI+LE M+FP+PVI VAIEPKTK D +
Sbjct: 361 HREEIDEVCSGDIAAAVGLKDTHTGDTICDEKHPIVLESMEFPEPVINVAIEPKTKQDQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM+ L +LA+EDP+F D+E QT+I GMGELHLEIIVDRL REFK
Sbjct: 421 KMSIALQRLAEEDPTFKMWTDQETGQTIIAGMGELHLEIIVDRLMREFK 469
|
|
| TIGR_CMR|CJE_0542 CJE_0542 "translation elongation factor G" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 1543 (548.2 bits), Expect = 2.3e-158, P = 2.3e-158
Identities = 295/469 (62%), Positives = 362/469 (77%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PLK RNIGI AHIDAGKTTT+ER+LF+TG ++KIGEVH+G ATMDWMEQE+ERGIT
Sbjct: 3 RSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVHDGAATMDWMEQEKERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W H+IN+IDTPGHVDFT+EVER++RVLDGA+ +F SV GV+PQSETVWRQ
Sbjct: 63 ITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A+KYGVPRI FVNKMDR+GANF+ D I L A P+ +Q+P+GAEDNFKGV+DLV MK
Sbjct: 123 ANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAEDNFKGVIDLVTMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
A++W + + ++IPA L++ A+EYR++MIE + E DE ME YL G E E IK
Sbjct: 183 ALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEAVSETSDELMEKYLGGEELSLEEIK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
I+ G ++ S VP+LCG+AFKNKGVQPLLDAVV YLP+P ++ +KG + E +++
Sbjct: 243 TGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVVAYLPAPDEVANIKGEYEDGTEVSVK- 301
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
++DD FAGLAFKIM+DPFVG LTFVRVY G L +GSY N+ K KKERIGRLL+MH+N
Sbjct: 302 -STDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCLESGSYAYNSTKDKKERIGRLLKMHSN 360
Query: 443 SREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
RE++KV KDT+TG+TL ++LERMDFPDPVI VA+EPKTKAD +
Sbjct: 361 KREEIKVLYAGEIGAVVGLKDTLTGDTLASEKDKVILERMDFPDPVISVAVEPKTKADQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM+ L KLAQEDPSF S DEE QT+I GMGELHLEIIVDR+ REFK
Sbjct: 421 KMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHLEIIVDRMLREFK 469
|
|
| TIGR_CMR|APH_1033 APH_1033 "translation elongation factor G" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
Identities = 290/464 (62%), Positives = 358/464 (77%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
L RNIGIMAHIDAGKTTTTER+LFYTG+ +IGEVHEG A+MDWMEQE+ERGITITSA
Sbjct: 7 LSKCRNIGIMAHIDAGKTTTTERILFYTGKQNRIGEVHEGAASMDWMEQEKERGITITSA 66
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
ATT +WN RINIIDTPGHVDFT+EVER+LRVLDGA+ +FD VAGVEPQSETVWRQAD+Y
Sbjct: 67 ATTCFWNGCRINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADRY 126
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRICFVNKMDR+GA+F+ DMIV LGA PLV+QLP+G + F GVVDLV+M++IIW
Sbjct: 127 DVPRICFVNKMDRVGADFYTCVDMIVDRLGAVPLVLQLPIGVDKGFVGVVDLVEMRSIIW 186
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
+ LGAKF Y DIP + + A +YRS+++ET VE+DDEAM YL+G + +KK IR
Sbjct: 187 EEDSLGAKFHYGDIPEGMLEEANKYRSKLVETAVEVDDEAMSMYLDGQDISVSLLKKCIR 246
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
G I +FVPVLCGSAFKNKGVQPLLDAVVDYLPSP D+P ++G ++P+ ++ S+
Sbjct: 247 AGVIGSNFVPVLCGSAFKNKGVQPLLDAVVDYLPSPNDIPTIEGVSAKDPDQVMQITTSE 306
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
D F LAFK+M D FVGSLTFVRVY+G L+ S VLN++KG E +GR+L MHAN+RED
Sbjct: 307 DGKFVALAFKVMVDRFVGSLTFVRVYSGKLTGKSVVLNSSKGHTESVGRILLMHANNRED 366
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMAN 506
+ K T TG+TLCD + P++LE+MDFP+ V+++AIEP + AD +KM
Sbjct: 367 ISEVKAGDIAALAGLKKTTTGDTLCDQNFPVILEKMDFPESVMELAIEPVSTADQEKMGM 426
Query: 507 GLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
L +L EDPS + E QT+++GMGELHLEIIVDR++REF
Sbjct: 427 ALSRLVAEDPSLKVFVNNESGQTILKGMGELHLEIIVDRMRREF 470
|
|
| TIGR_CMR|ECH_0961 ECH_0961 "translation elongation factor G" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
Identities = 287/464 (61%), Positives = 357/464 (76%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
L RNIGIMAHIDAGKTTTTER+LFYTG+ +IGEVHEG A+MDWMEQE+ERGITITSA
Sbjct: 7 LSKCRNIGIMAHIDAGKTTTTERILFYTGKQNRIGEVHEGAASMDWMEQEKERGITITSA 66
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
ATT +WN HRINIIDTPGHVDFT+EVER+LRVLDGA+ +FD VAGVEPQSETVWRQADKY
Sbjct: 67 ATTCFWNGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQADKY 126
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VPRICF+NKMDR+GA+F+R DM+V LGA PLV+QLP+G E +F GVVDL++M++IIW
Sbjct: 127 NVPRICFMNKMDRMGADFYRCVDMVVERLGATPLVLQLPIGIEKDFVGVVDLLEMRSIIW 186
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326
+ LGA F Y +IP ++ AQEYR++++E+ VEL+DEAM Y EG E +K IR
Sbjct: 187 DEDSLGASFHYGEIPKDMLDKAQEYRNKLLESAVELNDEAMNLYFEGKEISVSLLKSCIR 246
Query: 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386
G I FVPVLCGSAFKN+GVQPLLDAVVD+LP+P D+P M+ D + T+ +S
Sbjct: 247 AGVIQSKFVPVLCGSAFKNRGVQPLLDAVVDFLPAPNDIPMMEALDVKTSN-TINIKSSI 305
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
D F LAFK+M+D FVGSLTF+R+Y+G LS+ + VLNA K E IGR+L MHAN+RED
Sbjct: 306 DGKFVALAFKVMTDKFVGSLTFIRIYSGRLSSKTTVLNAVKNSTESIGRILLMHANNRED 365
Query: 447 VKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMAN 506
+ K T+TG+TLC D PI+LERM+FP+PV+++A+EPK+ AD +KM
Sbjct: 366 ITEAKAGDIVALAGLKKTVTGDTLCTLDQPIILERMEFPEPVMEIAVEPKSTADQEKMGI 425
Query: 507 GLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
L +L EDPS + E QT+++GMGELHLE+IVDR++REF
Sbjct: 426 ALSRLVAEDPSLGMCVNPESGQTILKGMGELHLEVIVDRMRREF 469
|
|
| UNIPROTKB|P0A6M8 fusA "elongation factor G" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
Identities = 289/475 (60%), Positives = 359/475 (75%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R P+ YRNIGI AHIDAGKTTTTER+LFYTG N+KIGEVH+G ATMDWMEQEQERGIT
Sbjct: 3 RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWN-------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
ITSAATT +W+ HRINIIDTPGHVDFT+EVER++RVLDGA+ ++ +V GV+PQ
Sbjct: 63 ITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQ 122
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQA+KY VPRI FVNKMDR+GANF + + I T LGA P+ +QL +GAE++F GV
Sbjct: 123 SETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGV 182
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
VDLVKMKAI W+ + G F YEDIPA++ ++A E+ +IE+ E +E ME YL G E
Sbjct: 183 VDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
E IK +R+ + + V CGSAFKNKGVQ +LDAV+DYLPSP+D+PA+ G +
Sbjct: 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDG 302
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
+ ER ASDDEPF+ LAFKI +DPFVG+LTF RVY+G +++G VLN+ K +ER GR
Sbjct: 303 KDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGR 362
Query: 436 LLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
+++MHAN RE++K KD TG+TLCD D PI+LERM+FP+PVI +A+EP
Sbjct: 363 IVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEP 422
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
KTKAD +KM L +LA+EDPSF DEE NQT+I GMGELHL+IIVDR+KREF
Sbjct: 423 KTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF 477
|
|
| TIGR_CMR|CBU_0235 CBU_0235 "translation elongation factor G" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 295/475 (62%), Positives = 360/475 (75%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R IPL RNIGIMAHIDAGKTTTTERVL+YTG ++K+GEVHEG+A MDWMEQEQERGIT
Sbjct: 5 REIPLNRTRNIGIMAHIDAGKTTTTERVLYYTGVSHKMGEVHEGSAVMDWMEQEQERGIT 64
Query: 143 ITSAATTTYW-------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
ITSAATT YW KHRINIIDTPGHVDFT+EVER+LRVLDGA+ +F SV GVEPQ
Sbjct: 65 ITSAATTCYWLGMDQQYPKHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFCSVGGVEPQ 124
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQA++Y VPR+ FVNKMDR GANF R + + L A P+ +QLP+GAE++FKGV
Sbjct: 125 SETVWRQANRYHVPRLGFVNKMDRAGANFLRVVNQVKDRLNANPIPIQLPIGAEEDFKGV 184
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
+DL++ KAI W+ + G + DIP +++ Q++R +MIE E +E M+ YLE +
Sbjct: 185 IDLIREKAIYWNEADRGRTYELADIPEDMKAEVQKWREKMIEAAAESSEELMDKYLEAGD 244
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
E I++ +R+ T+A VP+LCGSAFKNKGVQ LLDAV+DYLPSP D+PA++G + +
Sbjct: 245 LSPEQIRQGLRQRTLANEIVPILCGSAFKNKGVQALLDAVIDYLPSPTDVPAIRGEEDDG 304
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
E + R+ASDDEPFA LAFKI SDPFVG+LTF RVY+G L +G V N KGKKERIGR
Sbjct: 305 SEGS--RSASDDEPFAALAFKIASDPFVGTLTFFRVYSGILKSGDSVYNPIKGKKERIGR 362
Query: 436 LLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
LL+MH+NSRE++K K TG+T+C+ + I LE+MDFP+PVI VAIEP
Sbjct: 363 LLQMHSNSREEIKEVRAGDIAAAVGLKTVTTGDTICNQQNIITLEKMDFPEPVISVAIEP 422
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
KTKAD +KM L KLAQEDPSF DEE QT+IEGMGELHLEIIVDR++REF
Sbjct: 423 KTKADQEKMGVALGKLAQEDPSFRVHTDEESAQTIIEGMGELHLEIIVDRMRREF 477
|
|
| TIGR_CMR|SPO_3499 SPO_3499 "translation elongation factor G" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 292/482 (60%), Positives = 364/482 (75%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL YRN GIMAHIDAGKTT +ER+L+YTG+++ IGEVH+G ATMDWMEQEQERGIT
Sbjct: 3 REYPLNLYRNFGIMAHIDAGKTTCSERILYYTGKSHNIGEVHDGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWN-----------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 191
ITSAATTT+W KHR+NIIDTPGHVDFT+EVER+L VLDGA+C+ D+ AG
Sbjct: 63 ITSAATTTFWERTEDGATADTPKHRLNIIDTPGHVDFTIEVERSLAVLDGAVCVLDANAG 122
Query: 192 VEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251
VEPQ+ETVWRQAD+Y VPR+ FVNKMD++GA+FF MI GA+ + V +P+GAE
Sbjct: 123 VEPQTETVWRQADRYKVPRMVFVNKMDKIGADFFNCVRMIEDRTGARAVPVGIPIGAETE 182
Query: 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 311
+G+VDLV M+ +W GE+LGA + I +L+ MA+E+R +MIE VE DD+AM YL
Sbjct: 183 LEGLVDLVTMEEWLWQGEDLGASWVKAPIRDSLKDMAEEWRGKMIEAAVEEDDDAMMEYL 242
Query: 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT 371
EGNEPD T++KL+RKGT+A FVPVL GSAFKNKGVQPLL+AV+DYLPSPLD+ G
Sbjct: 243 EGNEPDVPTLRKLLRKGTLALHFVPVLGGSAFKNKGVQPLLNAVIDYLPSPLDVVDYMGF 302
Query: 372 DPENPEAT--LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK 429
P + E + R A D+ F+GLAFKIM+DPFVGSLTF RVY+G L G +LN+ KGK
Sbjct: 303 KPGDEEEVRNIARRADDNMAFSGLAFKIMNDPFVGSLTFTRVYSGVLKKGDTMLNSTKGK 362
Query: 430 KERIGRLLEMHANSREDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVI 489
KER+GR++ MH+N+RE++ KDT TG+TLCDA P++LE M FPDPVI
Sbjct: 363 KERVGRMMMMHSNNREEIDEAFAGDIIALAGLKDTTTGDTLCDAKDPVVLETMTFPDPVI 422
Query: 490 KVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549
++A+EPKTK D +KM+ GL +LA EDPSF D E QT+++GMGELHL+I+VDRLKRE
Sbjct: 423 EIAVEPKTKGDQEKMSQGLARLAAEDPSFRVETDIESGQTIMKGMGELHLDILVDRLKRE 482
Query: 550 FK 551
FK
Sbjct: 483 FK 484
|
|
| TIGR_CMR|NSE_0687 NSE_0687 "translation elongation factor G" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
Identities = 285/466 (61%), Positives = 357/466 (76%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT 144
+ L+ RNIGIMAHIDAGKTTTTER+L YTG N +GEVHEG ATMDWMEQE+ERGITIT
Sbjct: 6 VELEKIRNIGIMAHIDAGKTTTTERILLYTGVNRTVGEVHEGAATMDWMEQEKERGITIT 65
Query: 145 SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204
SAATT +W +INIIDTPGHVDFT+EVER+LRVLDGA+ +FD VAGVEPQSETVWRQAD
Sbjct: 66 SAATTCWWKGAKINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETVWRQAD 125
Query: 205 KYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAI 264
K+ VPR+CFVNKMDR+GA+F+R +M+V+ L A P+++QLP+G ++F GVVDLVKM+AI
Sbjct: 126 KHNVPRLCFVNKMDRMGADFYRCAEMLVSKLSANPVILQLPIGVSESFVGVVDLVKMQAI 185
Query: 265 IWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324
W G++ GAKF Y +IPA+L + A YR +++E I E DD+ M+ Y G E EE I+
Sbjct: 186 YWQGDDFGAKFEYREIPADLAEQAALYREKLMEKIAETDDKFMDKYFGGEEISEEEIRAA 245
Query: 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAA 384
IR GTI FVPVLCGSAFKNKGVQPLLDAVVDYLPSP+D + G + + E ++
Sbjct: 246 IRAGTIGYHFVPVLCGSAFKNKGVQPLLDAVVDYLPSPVDTKDIIGENEKGEEINIK--P 303
Query: 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSR 444
PF GLAFK+M+DP+VGSLTFVR+Y+GTL++G V+N++ KERIGR+L MHANSR
Sbjct: 304 DPKAPFVGLAFKVMNDPYVGSLTFVRIYSGTLNSGDVVINSHGDNKERIGRMLLMHANSR 363
Query: 445 EDVKVXXXXXXXXXXXXKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKM 504
EDVK K+T TG+TLC + + LER+ PDPVI++A+EPK+ A+ +KM
Sbjct: 364 EDVKSETAGNIVALAGLKNTSTGDTLCASGKVLTLERISAPDPVIEIAVEPKSTAEQEKM 423
Query: 505 ANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
A + +L EDPS + +EE QT++ GMGELHLEII+DRLKREF
Sbjct: 424 ALAVARLCAEDPSLKVASNEETGQTLLRGMGELHLEIILDRLKREF 469
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P41084 | EFG_RICPR | No assigned EC number | 0.6567 | 0.8196 | 0.6695 | yes | no |
| Q8KTB0 | EFG_RICBE | No assigned EC number | 0.6795 | 0.8126 | 0.6657 | yes | no |
| Q8KTB6 | EFG_RICMO | No assigned EC number | 0.6652 | 0.8196 | 0.6695 | yes | no |
| Q8KTB7 | EFG_RICRH | No assigned EC number | 0.6567 | 0.8196 | 0.6714 | yes | no |
| Q8KTB9 | EFG_RICPA | No assigned EC number | 0.6673 | 0.8196 | 0.6695 | yes | no |
| Q92J93 | EFG_RICCN | No assigned EC number | 0.6673 | 0.8196 | 0.6695 | yes | no |
| A7HWQ8 | EFG_PARL1 | No assigned EC number | 0.7036 | 0.8196 | 0.6772 | yes | no |
| Q1QN33 | EFG_NITHX | No assigned EC number | 0.6580 | 0.8108 | 0.6710 | yes | no |
| Q07KL5 | EFG_RHOP5 | No assigned EC number | 0.6567 | 0.8178 | 0.6768 | yes | no |
| B3QBY3 | EFG_RHOPT | No assigned EC number | 0.6759 | 0.8178 | 0.6768 | yes | no |
| A5V605 | EFG_SPHWW | No assigned EC number | 0.6721 | 0.8441 | 0.6985 | yes | no |
| A5ELN0 | EFG_BRASB | No assigned EC number | 0.6709 | 0.8108 | 0.6710 | yes | no |
| A8GQV7 | EFG_RICRS | No assigned EC number | 0.6695 | 0.8196 | 0.6695 | yes | no |
| B4R8L3 | EFG_PHEZH | No assigned EC number | 0.6531 | 0.8196 | 0.6763 | yes | no |
| Q2RQV7 | EFG_RHORT | No assigned EC number | 0.7063 | 0.8213 | 0.6777 | yes | no |
| Q211E5 | EFG_RHOPB | No assigned EC number | 0.6503 | 0.8178 | 0.6768 | yes | no |
| Q0ANP7 | EFG_MARMM | No assigned EC number | 0.6652 | 0.8196 | 0.6772 | yes | no |
| C4K1P6 | EFG_RICPU | No assigned EC number | 0.6673 | 0.8196 | 0.6695 | yes | no |
| B3CLA3 | EFG_WOLPP | No assigned EC number | 0.6702 | 0.8073 | 0.6671 | yes | no |
| Q1GP96 | EFG_SPHAL | No assigned EC number | 0.6841 | 0.8143 | 0.6671 | yes | no |
| Q2IXR3 | EFG_RHOP2 | No assigned EC number | 0.6673 | 0.8178 | 0.6768 | yes | no |
| A8GV17 | EFG_RICB8 | No assigned EC number | 0.6795 | 0.8126 | 0.6657 | yes | no |
| B3E7T2 | EFG_GEOLS | No assigned EC number | 0.6780 | 0.8178 | 0.6748 | yes | no |
| Q2G8Y3 | EFG_NOVAD | No assigned EC number | 0.6886 | 0.8178 | 0.6768 | yes | no |
| A8F0P0 | EFG_RICM5 | No assigned EC number | 0.6673 | 0.8196 | 0.6714 | yes | no |
| C0R543 | EFG_WOLWR | No assigned EC number | 0.6587 | 0.8161 | 0.6743 | yes | no |
| Q8KTC1 | EFG_RICRI | No assigned EC number | 0.6652 | 0.8196 | 0.6695 | yes | no |
| Q8KTA8 | EFG_RICFE | No assigned EC number | 0.6695 | 0.8196 | 0.6695 | yes | no |
| Q3SSW9 | EFG_NITWN | No assigned EC number | 0.6559 | 0.8108 | 0.6710 | yes | no |
| Q748Y8 | EFG2_GEOSL | No assigned EC number | 0.6716 | 0.8196 | 0.6763 | yes | no |
| Q134S6 | EFG_RHOPS | No assigned EC number | 0.6588 | 0.8178 | 0.6768 | yes | no |
| Q6N4T4 | EFG_RHOPA | No assigned EC number | 0.6759 | 0.8178 | 0.6768 | yes | no |
| Q4FLL6 | EFG_PELUB | No assigned EC number | 0.6538 | 0.8178 | 0.6748 | yes | no |
| Q89J81 | EFG_BRAJA | No assigned EC number | 0.6731 | 0.8108 | 0.6710 | yes | no |
| Q39Y09 | EFG1_GEOMG | No assigned EC number | 0.6844 | 0.8196 | 0.6763 | yes | no |
| A0LRL7 | EFG_ACIC1 | No assigned EC number | 0.6709 | 0.8143 | 0.6642 | yes | no |
| A8GMA0 | EFG_RICAH | No assigned EC number | 0.6774 | 0.8126 | 0.6638 | yes | no |
| Q2W2I8 | EFG_MAGSA | No assigned EC number | 0.6963 | 0.8196 | 0.6743 | yes | no |
| B0BWA2 | EFG_RICRO | No assigned EC number | 0.6695 | 0.8196 | 0.6695 | yes | no |
| Q5NQ66 | EFG_ZYMMO | No assigned EC number | 0.6993 | 0.8178 | 0.6768 | yes | no |
| Q2RFP4 | EFG_MOOTA | No assigned EC number | 0.6695 | 0.8178 | 0.6748 | yes | no |
| Q2N9A7 | EFG_ERYLH | No assigned EC number | 0.6591 | 0.8178 | 0.6568 | yes | no |
| A8EXK1 | EFG_RICCK | No assigned EC number | 0.6673 | 0.8196 | 0.6782 | yes | no |
| P34811 | EFGC_SOYBN | No assigned EC number | 0.8212 | 0.9597 | 0.6954 | yes | no |
| Q1RHC3 | EFG_RICBR | No assigned EC number | 0.6781 | 0.8126 | 0.6647 | yes | no |
| B6JET0 | EFG_OLICO | No assigned EC number | 0.6524 | 0.8178 | 0.6768 | yes | no |
| C3PMH0 | EFG_RICAE | No assigned EC number | 0.6631 | 0.8196 | 0.6695 | yes | no |
| Q73IX7 | EFG_WOLPM | No assigned EC number | 0.6587 | 0.8161 | 0.6743 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 571 | |||
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 0.0 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 0.0 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 0.0 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 0.0 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 0.0 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 0.0 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 0.0 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 2e-89 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-71 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 9e-69 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 2e-63 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 8e-57 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 6e-51 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 7e-51 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 3e-49 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 6e-42 | |
| cd04088 | 83 | cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamil | 4e-40 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 3e-39 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 8e-37 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 2e-34 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 2e-31 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 3e-31 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 3e-30 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 4e-29 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 2e-28 | |
| cd04092 | 83 | cd04092, mtEFG2_II_like, mtEFG2_C: C-terminus of m | 5e-27 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 1e-26 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-25 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 3e-25 | |
| cd04091 | 81 | cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of m | 8e-25 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 3e-24 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 9e-24 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 1e-23 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 3e-23 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 8e-21 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 2e-19 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 8e-18 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 5e-16 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 5e-14 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 5e-14 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-13 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 2e-13 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 2e-12 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 4e-12 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 8e-12 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 1e-11 | |
| cd03691 | 86 | cd03691, BipA_TypA_II, BipA_TypA_II: domain II of | 2e-11 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 7e-11 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 1e-10 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 2e-10 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 3e-10 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 3e-10 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 6e-10 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 2e-09 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 6e-09 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 9e-09 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 9e-09 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 4e-08 | |
| cd03700 | 93 | cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: th | 5e-08 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 5e-08 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 1e-07 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 1e-07 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 2e-07 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 2e-07 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 6e-07 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 1e-06 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 1e-06 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 2e-06 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 2e-06 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 4e-06 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 6e-06 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 7e-06 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 1e-05 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 3e-04 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 4e-04 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 4e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-04 | |
| cd03689 | 85 | cd03689, RF3_II, RF3_II: this subfamily represents | 6e-04 | |
| cd03690 | 85 | cd03690, Tet_II, Tet_II: This subfamily represents | 7e-04 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 0.001 | |
| cd04090 | 94 | cd04090, eEF2_II_snRNP, Loc2 eEF2_C_snRNP, cd01514 | 0.001 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 0.003 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 1000 bits (2587), Expect = 0.0
Identities = 338/469 (72%), Positives = 389/469 (82%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL+ YRNIGIMAHIDAGKTTTTER+LFYTG N+KIGEVH+G ATMDWMEQEQERGIT
Sbjct: 3 RETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W HRINIIDTPGHVDFT+EVER+LRVLDGA+ +FD+V GVEPQSETVWRQ
Sbjct: 63 ITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKY VPRI FVNKMDR GA+F+R + I LGA P+ +QLP+GAED+FKGVVDLVKMK
Sbjct: 123 ADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
AIIW+ +LGA F YE+IPA+L+ A+EYR ++IE E D+E ME YLEG E EE IK
Sbjct: 183 AIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK 242
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
+RK TIA VPVLCGSAFKNKGVQPLLDAVVDYLPSPLD+PA+KG P+ E +ER
Sbjct: 243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVER 302
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
ASDDEPF+ LAFKIM+DPFVG LTF RVY+G L +GSYVLN+ KGKKERIGR+L+MHAN
Sbjct: 303 KASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHAN 362
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
RE++K AGDI A GLKDT TG+TLCD +PI+LE M+FP+PVI VA+EPKTKAD +
Sbjct: 363 KREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEFPEPVISVAVEPKTKADQE 422
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM L KLA+EDPSF S DEE QT+I GMGELHL+IIVDR+KREFK
Sbjct: 423 KMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFK 471
|
Length = 693 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 941 bits (2436), Expect = 0.0
Identities = 335/469 (71%), Positives = 391/469 (83%), Gaps = 1/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R PL+ RNIGIMAHIDAGKTTTTER+L+YTG+++KIGEVH+G ATMDWMEQEQERGIT
Sbjct: 1 REFPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGIT 60
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W HRINIIDTPGHVDFT+EVER+LRVLDGA+ +FD+V+GVEPQSETVWRQ
Sbjct: 61 ITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQ 120
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
ADKYGVPRI FVNKMDR+GA+FFR+ + I LGA + +QLP+GAED+FKGV+DL+KMK
Sbjct: 121 ADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMK 180
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
AIIW E LGAK+ EDIPA+L++ A+EYR ++IE + E+D+E ME YLEG E EE IK
Sbjct: 181 AIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
IRK TI F PVLCGSAFKNKGVQPLLDAVVDYLPSPLD+PA+KG +P+ E +ER
Sbjct: 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEE-IER 299
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
ASDDEPFA LAFKIM+DPFVG LTF RVY+G L +GSYVLN KGKKERIGRLL+MHAN
Sbjct: 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHAN 359
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
RE++K AGDI A GLKDT TG+TLCD PI+LE M+FP+PVI +A+EPKTKAD D
Sbjct: 360 KREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPEPVISLAVEPKTKADQD 419
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM L KLA+EDP+F DEE QT+I GMGELHL+IIVDR+KREFK
Sbjct: 420 KMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFK 468
|
Length = 691 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 745 bits (1925), Expect = 0.0
Identities = 306/469 (65%), Positives = 370/469 (78%), Gaps = 2/469 (0%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R L +RNIGI AHIDAGKTTTTER+LFYTGR +KIGEVH+G ATMDWMEQE+ERGIT
Sbjct: 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGIT 62
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
ITSAATT +W HRINIIDTPGHVDFT+EVER+LRVLDGA+ + D+V GV+PQSETVWRQ
Sbjct: 63 ITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ 122
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A++Y VPRI FVNKMD+ GANF R + I LGA + +QLP+GAEDNF GV+DLV+MK
Sbjct: 123 ANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMK 182
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
A ++G + G K ++IP++L + A+E R ++E + E D+E ME YLEG E E IK
Sbjct: 183 AYFFNG-DKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
IRKG + F PVLCGSAFKNKGVQ LLDAVVDYLPSP D+PA+KG DP+ E +ER
Sbjct: 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDT-EKEIER 300
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
ASDDEPF+ LAFK+ +DPFVG LTFVRVY+G L +GSYV N+ K KKER+GRL++MHAN
Sbjct: 301 KASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHAN 360
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADID 502
+RE++K AGDI A GLKDT TG+TLCD ++LERM+FP+PVI +A+EPKTKAD +
Sbjct: 361 NREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEFPEPVISLAVEPKTKADQE 420
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
KM L KLA+EDP+F D E QT+I GMGELHL+IIVDR+KREFK
Sbjct: 421 KMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFK 469
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 738 bits (1908), Expect = 0.0
Identities = 312/471 (66%), Positives = 380/471 (80%), Gaps = 4/471 (0%)
Query: 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGI 141
R++PL+ RNIGI+AHIDAGKTT TER+LFYTG KIGEVH+G ATMDWMEQEQERGI
Sbjct: 2 ARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGI 61
Query: 142 TITSAATTTYWN-KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW 200
TITSAATT +W +RIN+IDTPGHVDFT+EVER+LRVLDGA+ + D+V GVEPQ+ETVW
Sbjct: 62 TITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW 121
Query: 201 RQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVK 260
RQADKYGVPRI FVNKMDRLGA+F+ + + LGA P+ VQLP+GAE+ F+GV+DLV+
Sbjct: 122 RQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVE 181
Query: 261 MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEET 320
MKA+ + GAK+ + +IPA+L+++A+E R +++E + E D+E ME YLEG EP EE
Sbjct: 182 MKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEE 238
Query: 321 IKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATL 380
IKK +RKGTIAG VPVLCGSAFKNKGVQPLLDAVVDYLPSPLD+P +KG + E +
Sbjct: 239 IKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAV 298
Query: 381 ERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH 440
R ASD+ P + L FKIM+DPFVG LTFVRVY+GTL +GS VLN+ KGKKER+GRLL MH
Sbjct: 299 LRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMH 358
Query: 441 ANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKAD 500
N RE+V AGDI+AL GLKD TG+TLCD + P++LE M+FP+PVI VA+EPKTKAD
Sbjct: 359 GNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFPEPVISVAVEPKTKAD 418
Query: 501 IDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
+K++ L KLA+EDP+F DEE +T+I GMGELHLEIIVDRLKREF
Sbjct: 419 QEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFG 469
|
Length = 697 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 703 bits (1818), Expect = 0.0
Identities = 265/456 (58%), Positives = 325/456 (71%), Gaps = 6/456 (1%)
Query: 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH 155
+ H AGKTT TE +LFYTG ++IGEV +GT TMD+M +E+ERGI+ITSAATT W H
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGH 60
Query: 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVN 215
+IN+IDTPGHVDFT EVERALRVLDGA+ + +V GVEPQ+ETVWRQA+KYGVPRI FVN
Sbjct: 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVN 120
Query: 216 KMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKF 275
KMDR GA+FFR + LGA + +QLP+G D+F GVVDL+ MKA + G
Sbjct: 121 KMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDE---GGPS 177
Query: 276 AYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 335
+IPA L A+E R +++E + E DDE ME YLEG E EE IK +RK T+AG V
Sbjct: 178 EEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237
Query: 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395
PV CGSA KNKGVQ LLDAVVDYLPSPL++P + G D E E A D P L F
Sbjct: 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGA---ELAPDPDGPLVALVF 294
Query: 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDI 455
K M DPFVG L+ VRVY+GTL G + N+ GKKER+GRL MH RE+V A+AGDI
Sbjct: 295 KTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDI 354
Query: 456 IALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQED 515
+A+A LKD TG+TLCD PILLE M+FP+PVI +AIEPK K D +K++ L KLA+ED
Sbjct: 355 VAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKLAEED 414
Query: 516 PSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
P+ RDEE QT++ GMGELHL++ ++RLKRE+
Sbjct: 415 PTLRVERDEETGQTILSGMGELHLDVALERLKREYG 450
|
Length = 668 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 667 bits (1724), Expect = 0.0
Identities = 249/469 (53%), Positives = 338/469 (72%), Gaps = 2/469 (0%)
Query: 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITS 145
PL RNIGI+AHIDAGKTT TER+LFYTG+ +K+GEV +GT DWM QEQERGITI S
Sbjct: 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIES 63
Query: 146 AATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
AAT+ W+ HRIN+IDTPGH+DFT EVER+LRVLDGA+ +FD+V GV+PQ+ETVWRQAD+
Sbjct: 64 AATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR 123
Query: 206 YGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAII 265
YG+PR+ F+NKMDR+GA+ F+ + I G +PL +QLP+G+ED F+GVVDL+ +
Sbjct: 124 YGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELH 183
Query: 266 WSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325
+S + G+ IP L + +E R ++IE + E DDE +E YLEG E E ++ +
Sbjct: 184 FSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243
Query: 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 385
R+GT +G VPVL GSA KN G++PLLDAVVDYLPSPL++P +G+ ++ ++
Sbjct: 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGS--KDNGKPVKVDPD 301
Query: 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRE 445
++P L FK+ DP+ G LT++RVY+GTL AGS + N GK+E++GRL + N RE
Sbjct: 302 PEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKRE 361
Query: 446 DVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMA 505
+V A AGDI+A+AGLK+ TG+TL D+ P+LLE + FP+PV+ +A+EP+ + D K+A
Sbjct: 362 EVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFPEPVVSLAVEPERRGDEQKLA 421
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLM 554
L KL EDPS DEE QT++ GMGELHLE+ ++RL+REFK +
Sbjct: 422 EALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEV 470
|
Length = 687 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 557 bits (1438), Expect = 0.0
Identities = 196/271 (72%), Positives = 228/271 (84%), Gaps = 1/271 (0%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
NIGI+AHIDAGKTTTTER+L+YTGR +KIGEVH G ATMDWMEQE+ERGITI SAATT +
Sbjct: 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCF 60
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
W HRINIIDTPGHVDFT+EVER+LRVLDGA+ +FD+VAGV+PQ+ETVWRQAD+YGVPRI
Sbjct: 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQADRYGVPRI 120
Query: 212 CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEEL 271
FVNKMDR GA+F+R + I LGA P+ +QLP+GAED+F+GVVDL++MKA+ W G EL
Sbjct: 121 AFVNKMDRTGADFYRVVEQIREKLGANPVPLQLPIGAEDDFEGVVDLIEMKALYWDG-EL 179
Query: 272 GAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331
G K DIP +L + A+E R ++IET+ E+DDE ME YLEG E EE IK IRKGTIA
Sbjct: 180 GEKIEETDIPEDLLEEAEEAREELIETLAEVDDELMEKYLEGEEITEEEIKAAIRKGTIA 239
Query: 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
VPVLCGSAFKNKGVQPLLDAVVDYLPSP
Sbjct: 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 2e-89
Identities = 106/271 (39%), Positives = 158/271 (58%), Gaps = 3/271 (1%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
NI ++ H +GKTT E +L+ TG ++G V +G D+ +E++R ++I ++
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSIETSVAPLE 60
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
WN H+IN+IDTPG+ DF E ALR +D A+ + ++ +GVE +E VW D +PRI
Sbjct: 61 WNGHKINLIDTPGYADFVGETLSALRAVDAALIVVEAQSGVEVGTEKVWEFLDDAKLPRI 120
Query: 212 CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEEL 271
F+NKMDR A+F +T + G + +QLP+G D F GVVDL+ KA + E
Sbjct: 121 IFINKMDRARADFDKTLAALREAFGRPVVPIQLPIGEGDEFTGVVDLLSEKAYRYDPGEP 180
Query: 272 GAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331
+ +IP L++ E R +++E + E D+E ME YLE E EE ++ +R+ A
Sbjct: 181 SVE---IEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEELRAGLRRALRA 237
Query: 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
G VPV GSA GV+ LLDA+V+ PSP
Sbjct: 238 GLIVPVFFGSALTGIGVRRLLDALVELAPSP 268
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 1e-71
Identities = 95/271 (35%), Positives = 136/271 (50%), Gaps = 34/271 (12%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
NIGI+AH+DAGKTT TE +L+ +G ++G V +GT D ME E++RGITI SA +
Sbjct: 1 NIGILAHVDAGKTTLTESLLYTSGAIRELGSVDKGTTRTDSMELERQRGITIFSAVASFQ 60
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
W ++NIIDTPGH+DF EVER+L VLDGAI + +V GV+ Q+ ++R K +P I
Sbjct: 61 WEDTKVNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILFRLLRKLNIPTI 120
Query: 212 CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEEL 271
FVNK+DR GA+ + I L + +Q + I +
Sbjct: 121 IFVNKIDRAGADLEKVYQEIKEKLSPDIVPMQKVG--------------LYPNICDTNNI 166
Query: 272 GAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331
+ IET+ E +DE +E YL G +E + +
Sbjct: 167 DDEQ--------------------IETVAEGNDELLEKYLSGGPLEELELDNELSARIQK 206
Query: 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
S PV GSA K G+ LL+ + + P+
Sbjct: 207 ASLFPVYHGSALKGIGIDELLEGITNLFPTS 237
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 9e-69
Identities = 74/180 (41%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K +RNIGI+ H+D GKTT T+ +L+ TG K E +G +D +++E+ERGITI AA
Sbjct: 1 KRHRNIGIIGHVDHGKTTLTDALLYVTGAISK--ESAKGARVLDKLKEERERGITIKIAA 58
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+ K INIIDTPGHVDFT E+ R DGAI + D+V GV PQ+ A G
Sbjct: 59 VSFETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTREHLLLAKTLG 118
Query: 208 VPRICFVNKMDRL-GANFFRTRDMIVTNL----GAKPLVVQ-LPVGAEDNFKGVVDLVKM 261
VP I F+NK+DR+ A + I L G V +P A G+ +L++
Sbjct: 119 VPIIVFINKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTGE-GIDELLEA 177
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 2e-63
Identities = 152/496 (30%), Positives = 227/496 (45%), Gaps = 67/496 (13%)
Query: 77 AAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH---EGT-ATMDW 132
A E ++R R I++H DAGKTT TE++L + G + G V G A DW
Sbjct: 6 AQEVARR-------RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDW 58
Query: 133 MEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV 192
ME E++RGI++TS+ + +N++DTPGH DF+ + R L +D A+ + D+ G+
Sbjct: 59 MEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI 118
Query: 193 EPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNF 252
EPQ+ ++ +P F+NK+DR G + D I LG + + P+G +F
Sbjct: 119 EPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDF 178
Query: 253 KGVVDLVKMKAIIWSGEELGAKFAYE-----DIPANLQKMAQEYRSQMIETIVELDDEAM 307
KGV L + ++ + + D P + ++ Q+ E + EL A
Sbjct: 179 KGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL-ELVQGA- 236
Query: 308 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPA 367
GNE D E +AG PV GSA N GV LDA+VD+ PSP A
Sbjct: 237 -----GNEFDLEAF--------LAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQA 283
Query: 368 MKGTDPENPEATLERAASDDEPFAGLAFKI---MSDPFVGSLTFVRVYAGTLSAGSYVLN 424
E ++D+ F+G FKI M + F+RV +G G V +
Sbjct: 284 DTR----------EVEPTEDK-FSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTH 332
Query: 425 ANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG---LKDTIT-GETLCDADHPI- 477
GK ++ L A RE V+ A AGDII L G + DT T GE L P
Sbjct: 333 VRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGEKLKFTGIPNF 392
Query: 478 ---LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGM 534
L R+ DP+ K K ++ GL +LA+E F + + N ++ +
Sbjct: 393 APELFRRVRLKDPL-------KQK----QLKKGLEQLAEEGAVQVF-KPLDGNDLILGAV 440
Query: 535 GELHLEIIVDRLKREF 550
G+L E++ RLK E+
Sbjct: 441 GQLQFEVVQARLKNEY 456
|
Length = 528 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (507), Expect = 8e-57
Identities = 163/496 (32%), Positives = 224/496 (45%), Gaps = 86/496 (17%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-------HEGTATMDWMEQEQERGITI 143
R I++H DAGKTT TE++L + G + G V H AT DWME E++RGI++
Sbjct: 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRH---ATSDWMEMEKQRGISV 67
Query: 144 TSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET---VW 200
TS+ + IN++DTPGH DF+ + R L +D A+ + D+ GVEPQ+ V
Sbjct: 68 TSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVC 127
Query: 201 RQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVK 260
R D P F+NK+DR G D I LG + P+G FKGV DL
Sbjct: 128 RLRD---TPIFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYN 184
Query: 261 MKAIIWSGEELGAKFAYE-----DIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
+ ++ E E D P + + ++ Q+ E + EL A NE
Sbjct: 185 DEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREEL-ELVQGA------SNE 237
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
D E +AG PV GSA N GVQ LDA V++ P+P
Sbjct: 238 FDLEAF--------LAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQ------------ 277
Query: 376 PEATLERAAS-DDEPFAGLAFKI---MSDP----FVGSLTFVRVYAGTLSAGSYVLNANK 427
P T ER +E F+G FKI M DP + FVRV +G G V +
Sbjct: 278 PRQTDEREVEPTEEKFSGFVFKIQANM-DPKHRDRIA---FVRVCSGKFEKGMKVRHVRT 333
Query: 428 GKKERIGRLLEMHANSREDVKVALAGDIIAL--AG---LKDTIT-GETL------CDADH 475
GK RI L A RE V+ A AGDII L G + DT T GE L A
Sbjct: 334 GKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGEKLKFTGIPNFA-- 391
Query: 476 PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMG 535
P L R+ +P+ K K + GL++L++E F R + N ++ +G
Sbjct: 392 PELFRRVRLKNPL-------KQKQ----LQKGLVQLSEEGAVQVF-RPLDNNDLILGAVG 439
Query: 536 ELHLEIIVDRLKREFK 551
+L E++ RLK E+
Sbjct: 440 QLQFEVVAHRLKNEYN 455
|
Length = 526 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 6e-51
Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 24/281 (8%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSA 146
R I++H DAGKTT TE++L + G + G V AT DWME E++RGI++TS+
Sbjct: 3 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISVTSS 62
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
+ IN++DTPGH DF+ + R L +D A+ + D+ GVEPQ+ ++
Sbjct: 63 VMQFEYKGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR 122
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
G+P I F+NK+DR G + D I LG + P+G +FKGV D + ++
Sbjct: 123 GIPIITFINKLDREGRDPLELLDEIENELGIDCAPMTWPIGMGKDFKGVYDRYDKEIYLY 182
Query: 267 SGEELGAKFAYEDI-----PANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321
GA A E+ P + + ++ Q+ E +EL + A G E D+E
Sbjct: 183 ERGAGGAIKAPEETKGLDDPKLDELLGEDLAEQLREE-LELVEGA------GPEFDKE-- 233
Query: 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
L G + PV GSA N GVQ LLDA V P+P
Sbjct: 234 --LFLAGELT----PVFFGSALNNFGVQELLDAFVKLAPAP 268
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 7e-51
Identities = 135/481 (28%), Positives = 204/481 (42%), Gaps = 58/481 (12%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSA 146
R I++H DAGKTT TE+VL Y G G V + A DWME E++RGI+IT++
Sbjct: 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTS 71
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
+ +N++DTPGH DF+ + R L +D + + D+ GVE ++ +
Sbjct: 72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR 131
Query: 207 GVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
P F+NK+DR + D + L + P+G FKGV L+K + ++
Sbjct: 132 DTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLY 191
Query: 267 SGEELGAKFAYEDIPA----NLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
G A + L +Q + +EL + A NE D
Sbjct: 192 QSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGA------SNEFDLAAF- 244
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
G PV G+A N GV LD ++ + P P + T
Sbjct: 245 -------HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRT----------- 286
Query: 383 AASDDEPFAGLAFKIMS--DP-FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEM 439
+E F+G FKI + DP + F+RV +G G + + GK I L
Sbjct: 287 VEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTF 346
Query: 440 HANSREDVKVALAGDIIALAG-----LKDTIT-GETL----CDADHPILLERMDFPDPVI 489
A RE V+ A AGDII L + DT T GE + P L R+ DP+
Sbjct: 347 MAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGEKIKFTGIPNFAPELFRRIRLKDPL- 405
Query: 490 KVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549
K K ++ GL++L E+ + R + N ++ +G L +++V RLK E
Sbjct: 406 ------KQK----QLLKGLVQL-SEEGAVQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEE 454
Query: 550 F 550
+
Sbjct: 455 Y 455
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-49
Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
N+G++ H+D GKTT T +L+ TG + G E +D +++E+ERGITI +
Sbjct: 1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKE--TFLDTLKEERERGITIKTGVVEFE 58
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
W K RIN IDTPGH DF+ E R L DGA+ + D+ GVEPQ+ A G+P I
Sbjct: 59 WPKRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPII 118
Query: 212 CFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQLP 245
VNK+DR+G +F I L
Sbjct: 119 VAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKG 153
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 6e-42
Identities = 65/140 (46%), Positives = 87/140 (62%), Gaps = 13/140 (9%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT-MDWMEQEQERGITITSAATT 149
RNI I+AH+D GKTT ++ +L I E G A +D E EQERGITI S+A +
Sbjct: 1 RNICIIAHVDHGKTTLSDSLL---ASAGIISEKLAGKARYLDTREDEQERGITIKSSAIS 57
Query: 150 TYW---------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW 200
Y+ N + IN+ID+PGHVDF+ EV ALR+ DGA+ + D+V GV Q+ETV
Sbjct: 58 LYFEYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETVL 117
Query: 201 RQADKYGVPRICFVNKMDRL 220
RQA + V + +NK+DRL
Sbjct: 118 RQALEERVKPVLVINKIDRL 137
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|239755 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 4e-40
Identities = 54/83 (65%), Positives = 65/83 (78%)
Query: 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449
F L FK + DPFVG L+FVRVY+GTL AGS + N+ KGKKER+GRLL MH +E+V+
Sbjct: 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEE 60
Query: 450 ALAGDIIALAGLKDTITGETLCD 472
A AGDI A+AGLKDT TG+TLCD
Sbjct: 61 AGAGDIGAVAGLKDTATGDTLCD 83
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. mtEFG1 and mtEFG2 show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 83 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 3e-39
Identities = 66/135 (48%), Positives = 88/135 (65%), Gaps = 8/135 (5%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA-TMDWMEQEQERGITITSAATT 149
RNIGI+AHID GKTT ++ +L G I E G +D+ E+EQ RGITI +A +
Sbjct: 21 RNIGIIAHIDHGKTTLSDNLLAGAG---MISEELAGEQLALDFDEEEQARGITIKAANVS 77
Query: 150 TYW----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
++ IN+IDTPGHVDF +V RA+R +DGAI + D+V GV PQ+ETV RQA +
Sbjct: 78 MVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR 137
Query: 206 YGVPRICFVNKMDRL 220
V + F+NK+DRL
Sbjct: 138 ERVKPVLFINKVDRL 152
|
Length = 731 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 8e-37
Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 148
RNI I+AH+D GKTT + +L +G + EV E MD + E+ERGITI + T
Sbjct: 1 KIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVGE--RVMDSNDLERERGITILAKNT 58
Query: 149 TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV 208
+ +INIIDTPGH DF EVER L ++DG + L D+ G PQ+ V ++A + G+
Sbjct: 59 AITYKDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEAGL 118
Query: 209 PRICFVNKMDRLGANFFRTRDMI 231
I +NK+DR A D +
Sbjct: 119 KPIVVINKIDRPDARPEEVVDEV 141
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-34
Identities = 71/210 (33%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 351 LLDAVVDYLPSPLD-----LPAM-KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404
+LD VV +LP+P++ +P + KG D + + P + I+ DP G
Sbjct: 247 VLDMVVKHLPNPIEAQKYRIPKIWKG-DLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAG 305
Query: 405 SLTFVRVYAGTLSAGS--YVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLK 462
+ RV++GTL G Y++ A KK R+ ++ RE+V+ AG+I A+ GLK
Sbjct: 306 EVATGRVFSGTLRKGQEVYLVGA--KKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLK 363
Query: 463 DTITGETLCDADHPILLERMD-FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 521
D GET+ + E + +PV+ VAIE K D+ K+ L +LA+EDP+
Sbjct: 364 DARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVK 423
Query: 522 RDEEINQTVIEGMGELHLEIIVDRLKREFK 551
+EE + ++ GMGELHLE+I R+KR++
Sbjct: 424 INEETGEHLLSGMGELHLEVITYRIKRDYG 453
|
Length = 731 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-31
Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT 149
RNI I+AH+D GKTT + +L +G V E MD + E+ERGITI + T
Sbjct: 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTA 58
Query: 150 TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP 209
+N +INI+DTPGH DF EVER L ++DG + L D+ G PQ+ V ++A + G+
Sbjct: 59 IRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK 118
Query: 210 RICFVNKMDRLGA 222
I +NK+DR A
Sbjct: 119 PIVVINKIDRPSA 131
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-31
Identities = 60/135 (44%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
+D RNI I+AH+D GKTT + +L +G + EV E MD + E+ERGITI +
Sbjct: 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAE--RVMDSNDLEKERGITILAKN 60
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
T +N RINI+DTPGH DF EVER L ++DG + L D+ G PQ+ V ++A G
Sbjct: 61 TAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALG 120
Query: 208 VPRICFVNKMDRLGA 222
+ I +NK+DR A
Sbjct: 121 LKPIVVINKIDRPDA 135
|
Length = 603 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-30
Identities = 68/134 (50%), Positives = 90/134 (67%), Gaps = 6/134 (4%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT- 149
RNIGI+AHID GKTT ++ +L G + E+ +D+ EQEQERGITI +A +
Sbjct: 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISE--ELAGQQLYLDFDEQEQERGITINAANVSM 77
Query: 150 --TY-WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
Y N++ IN+IDTPGHVDF +V RA+R +DGAI + +V GV PQ+ETV RQA K
Sbjct: 78 VHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE 137
Query: 207 GVPRICFVNKMDRL 220
V + F+NK+DRL
Sbjct: 138 NVKPVLFINKVDRL 151
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 4e-29
Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 7/210 (3%)
Query: 349 QPLLDAVVDYLPSPLD-----LPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403
Q +LD V+ +LPSP++ +P + D + P A + KI+ D
Sbjct: 244 QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHA 303
Query: 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463
G + R+Y+GT+ G V ++ K RI ++ R +V AG+I+A+ GLKD
Sbjct: 304 GEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363
Query: 464 TITGETLCDADHPIL-LERMD-FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 521
+ GET+C I E + +PV+ VAIE K D+ K+ L ++A+EDP+ H
Sbjct: 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVE 423
Query: 522 RDEEINQTVIEGMGELHLEIIVDRLKREFK 551
+EE + +I GMGELHLEIIV++++ ++
Sbjct: 424 INEETGEHLISGMGELHLEIIVEKIREDYG 453
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-28
Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT 150
RN I+AHID GK+T +R+L TG + E +D M+ E+ERGITI + A
Sbjct: 1 RNFSIIAHIDHGKSTLADRLLELTG---TVSEREMKEQVLDSMDLERERGITIKAQAVRL 57
Query: 151 YW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
++ ++ +N+IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+ + A +
Sbjct: 58 FYKAKDGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANFYLALE 117
Query: 206 YGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239
+ I +NK+D A+ R + I LG
Sbjct: 118 NNLEIIPVINKIDLPAADPDRVKQEIEDVLGLDA 151
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|239759 cd04092, mtEFG2_II_like, mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-27
Identities = 42/81 (51%), Positives = 54/81 (66%)
Query: 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449
LAFK++ DP G LTFVRVY+GTL GS + N N GKKERI RLL+ A+ +++
Sbjct: 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPS 60
Query: 450 ALAGDIIALAGLKDTITGETL 470
AG+I + GLK T TG+TL
Sbjct: 61 LSAGNIGVITGLKQTRTGDTL 81
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are not present in this group. Length = 83 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 14/141 (9%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT-MDWMEQEQERGITITSAATT 149
RN+ ++AH+D GK+T T+ ++ G I + G A D EQERGITI S +
Sbjct: 20 RNMSVIAHVDHGKSTLTDSLVCKAG---IISSKNAGDARFTDTRADEQERGITIKSTGIS 76
Query: 150 TYW--------NKHR--INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 199
Y+ +K IN+ID+PGHVDF+ EV ALRV DGA+ + D V GV Q+ETV
Sbjct: 77 LYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 136
Query: 200 WRQADKYGVPRICFVNKMDRL 220
RQA + + + F+NK+DR
Sbjct: 137 LRQALQERIRPVLFINKVDRA 157
|
Length = 836 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 24/178 (13%)
Query: 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT 149
I I+ + GK+T R+L I E GT +E G T
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKIS---ITEYKPGTTRNYVTTVIEEDGKTYK----- 52
Query: 150 TYWNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
N++DT G D+ VE +LRV D I + D +E Q++ +
Sbjct: 53 -------FNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHH 105
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVK 260
A+ GVP I NK+D A + L +P ++ L N +V+
Sbjct: 106 AE-SGVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFKIVE 161
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-25
Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
++ RNI I+AH+D GKTT +++L +G E E MD + E+ERGITI +
Sbjct: 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE--RVMDSNDLEKERGITILAK 59
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY 206
T WN +RINI+DTPGH DF EVER + ++D + + D+ G PQ+ V ++A Y
Sbjct: 60 NTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY 119
Query: 207 GVPRICFVNKMDRLGA 222
G+ I +NK+DR GA
Sbjct: 120 GLKPIVVINKVDRPGA 135
|
Length = 607 |
| >gnl|CDD|239758 cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 8e-25
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449
F GLAFK+ F G LT++R+Y G L G + N GKK R+ RL+ MH+N E+V+
Sbjct: 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEE 59
Query: 450 ALAGDIIALAGLKDTITGETLCD 472
A AGDI A+ G+ D +G+T D
Sbjct: 60 AGAGDICAIFGI-DCASGDTFTD 81
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG2s are not present in this group. Length = 81 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 21/160 (13%)
Query: 78 AEESKRVIPLKD-YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM-DWMEQ 135
AEE +R++ K RN+ ++AH+D GK+T T+ ++ G I + G M D
Sbjct: 6 AEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAG---IIAQEVAGDVRMTDTRAD 62
Query: 136 EQERGITITSAATTTYW----------------NKHRINIIDTPGHVDFTLEVERALRVL 179
E ERGITI S + Y+ N++ IN+ID+PGHVDF+ EV ALR+
Sbjct: 63 EAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRIT 122
Query: 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219
DGA+ + D + GV Q+ETV RQA + + VNKMDR
Sbjct: 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162
|
Length = 843 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-24
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG---TATMDWMEQEQERGITITSAA 147
RN+ I H+ GKT+ + ++ T + + V G D + EQERGI+I S
Sbjct: 1 RNVCIAGHLHHGKTSLLDMLIEQT--HKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNP 58
Query: 148 TT-----TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
+ + + INIIDTPGHV+F EV ALR+ DG + + D V G+ +E + R
Sbjct: 59 ISLVLEDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRH 118
Query: 203 ADKYGVPRICFV-NKMDRL 220
A + G+P + V NK+DRL
Sbjct: 119 AIQEGLP-MVLVINKIDRL 136
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-23
Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTG----RNYKIGEVHEGTATMDWMEQEQ 137
P K+ RN I+AHID GK+T +R+L TG R + +D M+ E+
Sbjct: 1 MTFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR-------AQVLDSMDIER 53
Query: 138 ERGITITS-AATTTYWNKH----RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV 192
ERGITI + A Y K +N+IDTPGHVDF+ EV R+L +GA+ + D+ GV
Sbjct: 54 ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV 113
Query: 193 EPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236
E Q+ A + + I +NK+D A+ R + I +G
Sbjct: 114 EAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG 157
|
Length = 603 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT 150
RN I+AHID GK+T +R+L YTG I E +D M+ E+ERGITI + A
Sbjct: 4 RNFSIIAHIDHGKSTLADRLLEYTG---AISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 151 YW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
+ + +N+IDTPGHVDF+ EV R+L +GA+ L D+ G+E Q+ A +
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE 120
Query: 206 YGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236
+ I +NK+D A+ R + I +G
Sbjct: 121 NDLEIIPVINKIDLPSADPERVKKEIEEVIG 151
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (240), Expect = 8e-21
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 16/115 (13%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTG----RNYKIGEVHEGTATMDWMEQEQERGITITSA 146
RN I+AHID GK+T +R++ TG R E+ +D M+ E+ERGITI +
Sbjct: 8 RNFSIIAHIDHGKSTLADRLIELTGTLSER-----EMKA--QVLDSMDLERERGITIKAQ 60
Query: 147 ATTTYW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS 196
A + + +N+IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+
Sbjct: 61 AVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 115
|
Length = 600 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 32/222 (14%)
Query: 350 PLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409
PL DA+V ++P+P DEP L + D ++G +
Sbjct: 181 PLFDAIVRHVPAP--------------------KGDLDEPLQMLVTNLDYDEYLGRIAIG 220
Query: 410 RVYAGTLSAGSYVLNANK-GKKE--RIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466
RV+ GT+ G V + G E RI +LL R ++ A AGDI+A+AGL+D
Sbjct: 221 RVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINI 280
Query: 467 GETLCDADHPILLERMDFPDPVIKVAIEPKT---------KADIDKMANGLIKLAQEDPS 517
GET+ D + P L + +P + + K + + L++ + + +
Sbjct: 281 GETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVA 340
Query: 518 FHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPK 559
E ++ + G GELHL I+++ ++RE +L + P+
Sbjct: 341 LRVEDTESADKFEVSGRGELHLSILIETMRREGFELQVGRPQ 382
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 8e-18
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 32/213 (15%)
Query: 349 QPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408
PL + ++D++P+P DEP ++ + +VG +
Sbjct: 184 APLFETILDHVPAP--------------------KGDLDEPLQMQVTQLDYNSYVGRIGI 223
Query: 409 VRVYAGTLSAGSYV--LNANKGKKE-RIGRLLEMHANSREDVKVALAGDIIALAGLKDTI 465
R++ GT+ V + ++ + RI +LL R +++ A AGDI+A+AGL+D
Sbjct: 224 GRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDIN 283
Query: 466 TGETLCDADHPILLERMDFPDPVIKVAIEPKT---------KADIDKMANGLIKLAQEDP 516
G+T+CD D+P L + +P + + ++ + L K + +
Sbjct: 284 IGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNV 343
Query: 517 SFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549
+ E + + G GELHL I+++ ++RE
Sbjct: 344 ALRVEETESPDAFEVSGRGELHLSILIENMRRE 376
|
Length = 603 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-16
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 20/161 (12%)
Query: 406 LTFVRVYAGTLSAGSYV--LNAN--KGKK-----ERIGRLLEMHANSREDVKVALAGDII 456
F RV++GT++ G V + N G+K + + R + +E V+ G+ +
Sbjct: 393 FAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTV 452
Query: 457 ALAGLKD------TITGETLCDADHPILLERMDFP-DPVIKVAIEPKTKADIDKMANGLI 509
A+ GL T+T E DA HPI + M F PV++VA++ K +D+ K+ GL
Sbjct: 453 AMVGLDQFITKNATLTNEKEVDA-HPI--KAMKFSVSPVVRVAVQCKNASDLPKLVEGLK 509
Query: 510 KLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
+LA+ DP + EE + +I G GELHLEI + L+ +F
Sbjct: 510 RLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDF 549
|
Length = 843 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-14
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 40/228 (17%)
Query: 351 LLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP------FVG 404
LL+ +VD+LPSP + A K L DDE + DP ++
Sbjct: 328 LLEMIVDHLPSPKE--AQKYR-----VENLYEGPMDDEAANAIR---NCDPNGPLMMYIS 377
Query: 405 SL----------TFVRVYAGTLSAGSYVL----NANKGKKE-----RIGRLLEMHANSRE 445
+ F RV++GT++ G V N GKKE I R + M E
Sbjct: 378 KMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVE 437
Query: 446 DVKVALAGDIIALAGLKDTI--TGETLCDADHPILLERMDFP-DPVIKVAIEPKTKADID 502
++ G+ + L G+ + +G T+ ++ + M + PV++VA+EPK D+
Sbjct: 438 QIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEPKNPKDLP 496
Query: 503 KMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF 550
K+ GL +LA+ DP + +E + ++ G GELH+EI + L+ ++
Sbjct: 497 KLVEGLKRLAKSDPLVVCTTEES-GEHIVAGCGELHVEICLKDLEDDY 543
|
Length = 836 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 5e-14
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTAT------------MDWMEQEQE 138
N+ ++ H+DAGK+T T +L+ G + + E +E A +D +++E+E
Sbjct: 1 NLVVIGHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDKLKEERE 60
Query: 139 RGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVAG 191
RG+TI K+R IID PGH DF + + A+ V+ F++
Sbjct: 61 RGVTIDVGLAKFETEKYRFTIIDAPGHRDFVKNMITGASQADVAVLVVSARKGEFEAGFE 120
Query: 192 VEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTR-DMIVTNLGA 237
Q+ A GV + I VNKMD + N+ + R D I +
Sbjct: 121 KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSQERYDEIKKKVSP 168
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGS--YVLNANKGKKERIGRLLEMHANSREDV 447
L FK+ D G++ RV +GTL G V G K ++ L +V
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEV 56
Query: 448 KVALAGDIIALAGLK--DTITGETLCD 472
A+AGDI+ + D G+TL D
Sbjct: 57 DEAVAGDIVGIVLKDKDDIKIGDTLTD 83
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-13
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 404 GSLTFVRVYAGTLSAGSYVLNA--NKGKKERIGRLLEMHANSREDVKVALAGDIIALAGL 461
G++ RV +GTL G V+ GKK R+ L H + RE V A AG I+A GL
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGL 60
Query: 462 KDTITGETLC 471
KD G+TL
Sbjct: 61 KDIKRGDTLT 70
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 19/217 (8%)
Query: 9 ASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPASHFLGSVCVFSPRSTSKLSPRSR 68
AS SS++ + + S + +S FL FS +TS S R R
Sbjct: 8 ASSSSSLLLPSSSSSSPSSSTFSFKSTSGKLKSLTLSSSFLSP---FSTTTTST-SQRRR 63
Query: 69 RQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTE---RVLFYTGRNYKIGEVHE 125
R F+V A A + +R P + NIG + H+D GKTT T L G G +
Sbjct: 64 RSFTVRA-ARGKFERKKP---HVNIGTIGHVDHGKTTLTAALTMALASMG-----GSAPK 114
Query: 126 GTATMDWMEQEQERGITITSAATTTYWNKHR-INIIDTPGHVDFTLEVERALRVLDGAIC 184
+D +E+ RGITI +A T Y ++R +D PGH D+ + +DGAI
Sbjct: 115 KYDEIDAAPEERARGITINTA-TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAIL 173
Query: 185 LFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220
+ G PQ++ A + GVP + F+NK D++
Sbjct: 174 VVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210
|
Length = 478 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 34/225 (15%)
Query: 337 VLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396
+ SA G++ +L+A+V +P P D P L F
Sbjct: 157 AILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFD 196
Query: 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGD-- 454
D + G + VRV+ GT+ G + + GK+ + + + +++ AG+
Sbjct: 197 SHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELS-AGEVG 255
Query: 455 --IIALAGLKDTITGETLCDADHPILLERMDF--PDPVIKVAIEPKTKADIDKMANGLIK 510
I + + D G+T+ +P F P++ + P D + + + L K
Sbjct: 256 YIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEK 315
Query: 511 LAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550
L D S + E + + G +G LH+EII +RL+REF
Sbjct: 316 LKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREF 358
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG-------RNYKIGEVHEGTAT------MDWME 134
K + N+ + H+DAGK+T R+L+ G + G + +D +
Sbjct: 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTK 64
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV-------ERALRVLDGAICLFD 187
+E+ERG+TI A + +K+ IID PGH DF + + A+ V+D F+
Sbjct: 65 EERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFE 124
Query: 188 SVAGVEPQSETVWRQADKYGVPRICF-VNKMD 218
+ GV Q+ A G+ ++ VNKMD
Sbjct: 125 AGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156
|
Length = 428 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-11
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 35/226 (15%)
Query: 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395
VL SA G++ +L+A+V+ +P P D P L F
Sbjct: 163 AVLV-SAKTGIGIEDVLEAIVEKIPPP--------------------KGDPDAPLKALIF 201
Query: 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDI 455
D ++G + VR++ GTL G + + GK+ + + V AG++
Sbjct: 202 DSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPK-MVKVDELKAGEV 260
Query: 456 -IALAGLK---DTITGETLCDADHPIL--LERMDFPDPVIKVAIEPKTKADIDKMANGLI 509
+AG+K D G+T+ A +P L P++ + P D + + + L
Sbjct: 261 GYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALE 320
Query: 510 KLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550
KL D S + E +Q + G +G LH+EII +RL+REF
Sbjct: 321 KLQLNDASLTYEP--ETSQALGFGFRCGFLGLLHMEIIQERLEREF 364
|
Length = 603 |
| >gnl|CDD|239662 cd03691, BipA_TypA_II, BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-11
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 399 SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKE---RIGRLLEMHANSREDVKVALAGDI 455
D +VG + R++ GT+ G V + K +I +L R +V+ A AGDI
Sbjct: 10 YDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDI 69
Query: 456 IALAGLKDTITGETLCD 472
+A+AG++D G+T+CD
Sbjct: 70 VAIAGIEDITIGDTICD 86
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 86 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG-------RNYKIGEVHEGTAT------MDWME 134
K++ N+ + H+D GK+TT +L+ G ++ +G A+ MD ++
Sbjct: 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLK 64
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG--- 191
+E+ERG+TI A +K+ + I+D PGH DF + D A+ + G
Sbjct: 65 EERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124
Query: 192 VEPQSETVWRQADKYGVPRICF-VNKMDRL 220
V+PQ+ A G+ ++ +NKMD +
Sbjct: 125 VQPQTREHAFLARTLGINQLIVAINKMDSV 154
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 28/188 (14%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTY 151
+ IM H+D GKT+ L + R K+ + G GIT A
Sbjct: 90 VTIMGHVDHGKTS-----LLDSIRKTKVAQGEAG-------------GITQHIGAYHVEN 131
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
+ I +DTPGH FT R +V D + + + GV PQ+ A VP I
Sbjct: 132 EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPII 191
Query: 212 CFVNKMDRLGANFFRTR------DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAII 265
+NK+D+ AN R + ++ + G + V PV A G+ +L+ M +
Sbjct: 192 VAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFV--PVSALTG-DGIDELLDMILLQ 248
Query: 266 WSGEELGA 273
EEL A
Sbjct: 249 SEVEELKA 256
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MD 131
MA E+ +R K + NIG + H+D GKTT T + + A +D
Sbjct: 1 MAKEKFERT---KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGG------AAARAYDQID 51
Query: 132 WMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 191
+E+ RGITI +A +D PGH D+ + +DGAI + + G
Sbjct: 52 NAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG 111
Query: 192 VEPQSETVWRQADKYGVPRI-CFVNKMD 218
PQ+ A + GVP I F+NK D
Sbjct: 112 PMPQTREHILLARQVGVPYIVVFLNKCD 139
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 21/137 (15%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK 154
IM H+D GKTT +++ R + G GIT A +
Sbjct: 10 IMGHVDHGKTTLLDKI-----RKTNVAAGEAG-------------GITQHIGAYQVPLDV 51
Query: 155 ---HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
I IDTPGH FT R V D AI + + GV PQ+ A GVP +
Sbjct: 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIV 111
Query: 212 CFVNKMDRLGANFFRTR 228
+NK+D+ AN + +
Sbjct: 112 VAINKIDKPEANPDKVK 128
|
Length = 509 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA------------TMDWME 134
K + N+ ++ H+D GK+T R+L+ TG + I E A MD ++
Sbjct: 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLK 63
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAI--CLFDSVAGV 192
+E+ERG+TI A +K+ I+D PGH DF + D A+ D GV
Sbjct: 64 EERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV 123
Query: 193 EPQSETVWRQADKYGVPR-ICFVNKMD 218
PQ+ A G+ + I +NKMD
Sbjct: 124 MPQTREHVFLARTLGINQLIVAINKMD 150
|
Length = 425 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 35 PRSLGLLPSPASHFLGSVCVFSPRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIG 94
P S LLP + + S S + R+ S + + R K + N+G
Sbjct: 9 PNSKRLLPFSSQIYCACRGSAPSTSASISAADDRQSPSPWWRSMATFTRT---KPHVNVG 65
Query: 95 IMAHIDAGKTTTTE---RVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
+ H+D GKTT T +VL G+ + +D +E+ RGITI +A
Sbjct: 66 TIGHVDHGKTTLTAAITKVLAEEGKAKAV-----AFDEIDKAPEEKARGITIATAHVEYE 120
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
K +D PGH D+ + +DG I + + G PQ++ A + GVP +
Sbjct: 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 180
Query: 212 -CFVNKMD 218
F+NK+D
Sbjct: 181 VVFLNKVD 188
|
Length = 447 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
MA E+ +R K + N+G + H+D GKTT T + + G + +D +
Sbjct: 1 MAKEKFERT---KPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPE 55
Query: 136 EQERGITITSA------ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189
E+ RGITI +A A Y H +D PGH D+ + +DGAI + +
Sbjct: 56 EKARGITINTAHVEYETANRHY--AH----VDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 190 AGVEPQSETVWRQADKYGVPRIC-FVNKMD 218
G PQ+ A + GVP I F+NK+D
Sbjct: 110 DGPMPQTREHILLARQVGVPYIVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT--TYW 152
+M H+D GKTT +++ R + + GIT A
Sbjct: 5 VMGHVDHGKTTLLDKI-----RKTNVAA-------------GEAGGITQHIGAYQVPIDV 46
Query: 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 212
I IDTPGH FT R V D AI + + GV PQ+ A VP I
Sbjct: 47 KIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIV 106
Query: 213 FVNKMDRL-GANFFRTR 228
+NK+D+ G R
Sbjct: 107 AINKIDKPYGTEADPER 123
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 40/207 (19%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152
+ I+ H+D GKTT +++ R +I Q++ GIT A +
Sbjct: 247 VTILGHVDHGKTTLLDKI-----RKTQIA-------------QKEAGGITQKIGAYEVEF 288
Query: 153 ----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV 208
+I +DTPGH F+ R V D AI + + GV+PQ+ V
Sbjct: 289 EYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANV 348
Query: 209 PRICFVNKMDRLGANFFRTR------DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
P I +NK+D+ AN R + ++I G ++ + N +++ + +
Sbjct: 349 PIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQ 289
A I ED+ A+ ++AQ
Sbjct: 409 AEI------------EDLKADPTQLAQ 423
|
Length = 742 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 34/178 (19%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTA------------------- 128
K + N+ ++ H+D+GK+TTT ++ YK G + + T
Sbjct: 5 KTHINLVVIGHVDSGKSTTTGHLI------YKCGGIDKRTIEKFEKEAAEMGKGSFKYAW 58
Query: 129 TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRVLDG 181
+D ++ E+ERGITI A K+ IID PGH DF T + + A+ V+
Sbjct: 59 VLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVAS 118
Query: 182 AICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTR-DMIVTNLGA 237
F++ + Q+ A GV + I +NKMD N+ + R D I + A
Sbjct: 119 TAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSA 176
|
Length = 446 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 4e-08
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTAT------------MDWMEQEQE 138
NI ++ H+D+GK+TTT +++ G + ++ E E A +D ++ E+E
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Query: 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-----AGVE 193
RGITI A K+ +ID PGH DF + D A+ + DS AG+
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS 128
Query: 194 PQSETVWRQ--ADKYGVPR-ICFVNKMDRLGANFFRTR 228
+T A GV + IC NKMD + + R
Sbjct: 129 KDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
|
Length = 447 |
| >gnl|CDD|239671 cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 396 KIMSDPFVGSL-TFVRVYAGTLSAGS--YVLNAN-------KGKKERIGRLLEMHANSRE 445
K++ P G F RV++GT+ G VL N K+ I RL M RE
Sbjct: 7 KMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYRE 66
Query: 446 DVKVALAGDIIALAGLKDTITGET 469
V AG+I+ + GL +G T
Sbjct: 67 PVDEVPAGNIVLIVGLDQLKSGTT 90
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. Length = 93 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTE---RVLFYTGRNYKIGEVHEGTATMDW 132
MA E+ R K + NIG + H+D GKTT T +VL G N + ++D
Sbjct: 1 MAKEKFDRS---KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLN-----QAKDYDSIDA 52
Query: 133 MEQEQERGITITSA----ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDS 188
+E+ERGITI +A T H +D PGH D+ + +DGAI + +
Sbjct: 53 APEEKERGITINTAHVEYETEKRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAA 108
Query: 189 VAGVEPQSETVWRQADKYGVPRI-CFVNKMD 218
G PQ+ A + GVP + F+NK+D
Sbjct: 109 TDGPMPQTREHILLARQVGVPYLVVFLNKVD 139
|
Length = 394 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 318 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPS 361
EE ++L+ K G VPV+ GSA +G+ LL+A+ YLPS
Sbjct: 141 EEISRELLEKYGFGGETVPVVPGSALTGEGIDELLEALDLYLPS 184
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 348 VQPLLDAVVDYLPSP-LDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406
+ PL A+VD++P+P +DL D PF ++ + +VG +
Sbjct: 183 MTPLYQAIVDHVPAPDVDL---------------------DGPFQMQISQLDYNSYVGVI 221
Query: 407 TFVRVYAGTLSAGSYVL---NANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463
R+ G + V + K + ++G++L R + +A AGDI+A+ GL +
Sbjct: 222 GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGE 281
Query: 464 TITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANG------LIKLAQE--- 514
+T+CD + L + +P + + T K L +L +E
Sbjct: 282 LNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVH 341
Query: 515 DPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPK 559
+ + E+ + + G GELHL ++++ ++RE +L + PK
Sbjct: 342 NVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPK 386
|
Length = 607 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 2e-07
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 45/230 (19%)
Query: 337 VLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396
VL SA G++ +L+A+V+ +P P KG +P+A L +A L F
Sbjct: 162 VLV-SAKTGIGIEEVLEAIVERIPPP------KG----DPDAPL-KA---------LIFD 200
Query: 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRL-LEMHANSREDVKVALA 452
D + G + VRV GTL G + + GK+ + +G +M V A
Sbjct: 201 SWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMV-----PVDELSA 255
Query: 453 GDI--IALAGLK---DTITGETLCDADHPIL--LERMDFPDPVIKVAIEPKTKADIDKMA 505
G++ I AG+K D G+T+ A +P L P++ + P D + +
Sbjct: 256 GEVGYII-AGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLR 314
Query: 506 NGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550
+ L KL D S + + E +Q + G +G LH+EII +RL+REF
Sbjct: 315 DALEKLQLNDASLTY--EPETSQALGFGFRCGFLGLLHMEIIQERLEREF 362
|
Length = 600 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
I H+D GKTT + + G A + +E++RG+TI
Sbjct: 2 IIATAGHVDHGKTTLLKAL--------------TGIAADR-LPEEKKRGMTIDLGFAYFP 46
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
+R+ ID PGH F +D A+ + D+ GV Q+ D G+P
Sbjct: 47 LPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHT 106
Query: 212 CFV-NKMDR 219
V K DR
Sbjct: 107 IVVITKADR 115
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 22/134 (16%)
Query: 94 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN 153
++ GK++ G GT T D
Sbjct: 1 VVVGRGGVGKSSLLNA---LLGGEVGEVSDVPGT-TRD-----------PDVYVKELDKG 45
Query: 154 KHRINIIDTPGHVDF-----TLEVERALRVLDGAICLFDS--VAGVEPQSETVWRQADKY 206
K ++ ++DTPG +F LR D + + DS E + R+ K
Sbjct: 46 KVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE 105
Query: 207 GVPRICFVNKMDRL 220
G+P I NK+D L
Sbjct: 106 GIPIILVGNKIDLL 119
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 23/138 (16%)
Query: 92 NIGIMAHIDAGKTTTTE---RVLFYTGRNYKIGEVHEGTATMDWME-----QEQERGITI 143
N+G + H+D GKTT T +VL G G + E +E+ RGITI
Sbjct: 4 NVGTIGHVDHGKTTLTAAITKVLAKKG----------GAKAKKYDEIDKAPEEKARGITI 53
Query: 144 TSAATTTY--WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR 201
+ A Y N+H + +D PGH D+ + +DGAI + + G PQ+
Sbjct: 54 -NTAHVEYETANRHYAH-VDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLL 111
Query: 202 QADKYGVPRI-CFVNKMD 218
A + GVP I F+NK D
Sbjct: 112 LARQVGVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 34/158 (21%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTE---RVLFYTG----RNYKIGEVHEGTA 128
MA E+ +R K + N+G + H+D GKTT T +VL G + Y
Sbjct: 1 MAKEKFERT---KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAY---------D 48
Query: 129 TMDWMEQEQERGITITSA----ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAIC 184
+D +E+ RGITI ++ T H +D PGH D+ + +DGAI
Sbjct: 49 QIDNAPEEKARGITINTSHVEYETANRHYAH----VDCPGHADYVKNMITGAAQMDGAIL 104
Query: 185 LFDSVAGVEPQS-ETVW--RQADKYGVPRI-CFVNKMD 218
+ + G PQ+ E + RQ GVP I F+NK D
Sbjct: 105 VVSAADGPMPQTREHILLARQV---GVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERV-----LFYTGRNYKIGEVHEGTATM 130
MA E+ +R K + NIG + H+D GKTT T + + K E+
Sbjct: 1 MAREKFERK---KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEI------- 50
Query: 131 DWMEQEQERGITITSA----ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLF 186
D +E+ RGITI +A T H +D PGH D+ + +DGAI +
Sbjct: 51 DSAPEEKARGITINTAHVEYETENRHYAH----VDCPGHADYVKNMITGAAQMDGAILVV 106
Query: 187 DSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220
+ G PQ++ A + GVP I F+NK D++
Sbjct: 107 SAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141
|
Length = 409 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 98 HIDAGKTTTTERVLFYTG-----------RNYKIGEVHEG---TATMDWMEQEQERGITI 143
+D GK+T R+L+ + R+ G E +D ++ E+E+GITI
Sbjct: 7 SVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAEREQGITI 66
Query: 144 TSA----ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETV 199
A +T K + I DTPGH +T + D AI L D+ GV Q+
Sbjct: 67 DVAYRYFST----PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRH 122
Query: 200 WRQADKYGVPRICF-VNKMDRLG 221
A G+ + VNKMD +
Sbjct: 123 SYIASLLGIRHVVVAVNKMDLVD 145
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTY 151
IG HID GKTT + + TG D + +E++RGITI A
Sbjct: 2 IGTAGHIDHGKTTLIKAL---TGIE------------TDRLPEEKKRGITIDLGFAYLDL 46
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR- 210
+ R+ ID PGH F + +D + + + G+ PQ+ + G+ +
Sbjct: 47 PDGKRLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKG 106
Query: 211 ICFVNKMDR 219
+ + K D
Sbjct: 107 LVVLTKADL 115
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 25/119 (21%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-------- 143
N+G++ H+D+GKT+ + L TA D Q QERGIT+
Sbjct: 2 NVGLLGHVDSGKTSLA-KALSEIA----------STAAFDKNPQSQERGITLDLGFSSFE 50
Query: 144 ------TSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS 196
++I ++D PGH + +++D + + D+ G++ Q+
Sbjct: 51 VDKPKHLEDNENPQIENYQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQT 109
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 24/133 (18%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
IG HID GKTT + L G T D + +E++RGITI +
Sbjct: 2 IIGTAGHIDHGKTTLLK-ALT-------------GGVT-DRLPEEKKRGITID----LGF 42
Query: 152 WN----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
+ + ID PGH DF + L +D A+ + + G+ Q+ D G
Sbjct: 43 YYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLG 102
Query: 208 VPRICFV-NKMDR 219
+ V K DR
Sbjct: 103 IKNGIIVLTKADR 115
|
Length = 447 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTT---ERVLFYTG----RNYKIGEVHEGTA 128
MA E+ +R K + N+G + H+D GKTT T +VL G + Y
Sbjct: 1 MAKEKFERT---KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAY---------D 48
Query: 129 TMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDFTLEVERALRVLDGAICLF 186
+D +E+ RGITI + A Y +H + +D PGH D+ + +DGAI +
Sbjct: 49 QIDKAPEEKARGITI-NTAHVEYETEKRHYAH-VDCPGHADYVKNMITGAAQMDGAILVV 106
Query: 187 DSVAGVEPQS-ETVW--RQADKYGVPRI-CFVNKMD 218
+ G PQ+ E + RQ GVP I F+NK D
Sbjct: 107 SAADGPMPQTREHILLARQV---GVPYIVVFLNKCD 139
|
Length = 396 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 131 DWMEQEQERGITITSA----ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLF 186
D +E E+E+GITI A +T K + I DTPGH +T + D AI L
Sbjct: 62 DGLEAEREQGITIDVAYRYFST----EKRKFIIADTPGHEQYTRNMATGASTADLAILLV 117
Query: 187 DSVAGVEPQSETVWRQADKYGVPRICF-VNKMD 218
D+ GV Q+ A G+ + VNKMD
Sbjct: 118 DARKGVLEQTRRHSFIASLLGIRHVVVAVNKMD 150
|
Length = 431 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 79 EESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQE 138
+ ++I K I ++ + AGKTT + + K + E A+ + +
Sbjct: 3 SAANKMIETK----IVVIGPVGAGKTTFVRAL------SDKPLVITEADASSV--SGKGK 50
Query: 139 RGITIT-SAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE 197
R T+ + +++ TPG F E R GAI L DS + +E
Sbjct: 51 RPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAE 110
Query: 198 TVWRQAD-KYGVPRICFVNKMD 218
+ + +P + +NK D
Sbjct: 111 EIIDFLTSRNPIPVVVAINKQD 132
|
Length = 187 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT-----ITSAA 147
+ ++ H+D GKTT +++ R + + G T Q G T +
Sbjct: 7 VSVLGHVDHGKTTLLDKI-----RGSAVAKREAGGIT-------QHIGATEIPMDVIEGI 54
Query: 148 TTTYWNKHRINI-------IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW 200
K +I + IDTPGH FT +R + D AI + D G +PQ++
Sbjct: 55 CGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL 114
Query: 201 RQADKYGVPRICFVNKMDRL 220
Y P + NK+DR+
Sbjct: 115 NILRMYKTPFVVAANKIDRI 134
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 44/137 (32%), Positives = 56/137 (40%), Gaps = 34/137 (24%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK 154
IM H+D GKT+ L R + G GIT A N
Sbjct: 254 IMGHVDHGKTS-----LLDAIRKTNVAAGEAG-------------GITQHIGAYQVETNG 295
Query: 155 HRINIIDTPGHVDFTLEVERALR-----VLDGAICLFDSVA---GVEPQSETVWRQADKY 206
+I +DTPGH FT A+R V D + + VA GV PQ+ A
Sbjct: 296 GKITFLDTPGHEAFT-----AMRARGAQVTDIVVLV---VAADDGVMPQTIEAINHAKAA 347
Query: 207 GVPRICFVNKMDRLGAN 223
GVP I +NK+D+ GAN
Sbjct: 348 GVPIIVAINKIDKPGAN 364
|
Length = 746 |
| >gnl|CDD|239660 cd03689, RF3_II, RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 6e-04
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 392 GLAFKI---MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 448
G FKI M + FVRV +G G V + GK+ R+ + A RE V
Sbjct: 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVD 60
Query: 449 VALAGDIIALAGLKDTITGETLC 471
A GDII L + G+TL
Sbjct: 61 EAYPGDIIGLVNPGNFQIGDTLT 83
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. Length = 85 |
| >gnl|CDD|239661 cd03690, Tet_II, Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446
+ +G FKI D L ++R+Y+GTL V N+ +K +I L +
Sbjct: 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVR-VNREEKIKITELRVFNNGEVVT 59
Query: 447 VKVALAGDIIALAGLKDTITGETL 470
AGDI L GLK G+ L
Sbjct: 60 ADTVTAGDIAILTGLKGLRVGDVL 83
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 85 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 130 MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189
+D ++ E+E+GITI A +K + + DTPGH +T + D A+ L D+
Sbjct: 55 VDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDAR 114
Query: 190 AGVEPQSETVWRQADKYGVPRICF-VNKMD 218
GV Q+ A G+ + VNKMD
Sbjct: 115 KGVLEQTRRHSYIASLLGIRHVVLAVNKMD 144
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|239757 cd04090, eEF2_II_snRNP, Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 396 KIMSDPFVGSL-TFVRVYAGTLSAGS--YVLNAN-------KGKKERIGRLLEMHANSRE 445
K+ S GS F R+Y+GT+ G VL N IGRL + +
Sbjct: 7 KLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKI 66
Query: 446 DVKVALAGDIIALAGLKDTIT-GETLCD 472
+V A AG+ + + G+ +I T+
Sbjct: 67 EVNEAPAGNWVLIKGIDSSIVKTATITS 94
|
This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Length = 94 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 318 EETIKKLIRKG---TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
IK+L++ + G VP++ SA +G++ LLDA+V++LP P
Sbjct: 136 LREIKELLKLIGFTFLKGKDVPIIPISALTGEGIEELLDAIVEHLPPP 183
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 571 | |||
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 100.0 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 100.0 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 100.0 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 100.0 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 100.0 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 100.0 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 100.0 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 100.0 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 100.0 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 100.0 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 100.0 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 100.0 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 100.0 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 100.0 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 100.0 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 100.0 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 100.0 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 100.0 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 100.0 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 100.0 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 100.0 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 100.0 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 100.0 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 100.0 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 100.0 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 100.0 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 100.0 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 100.0 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 100.0 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 100.0 | |
| CHL00071 | 409 | tufA elongation factor Tu | 100.0 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 100.0 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 100.0 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 100.0 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 100.0 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 100.0 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 100.0 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 100.0 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 100.0 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 100.0 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 100.0 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 100.0 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 100.0 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 100.0 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 100.0 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 100.0 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 100.0 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 100.0 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 100.0 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.97 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.97 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.97 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.97 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.97 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.97 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.96 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.96 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.96 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.96 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.95 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.95 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.95 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.93 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.93 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.92 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.92 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.92 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.91 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.9 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.9 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 99.9 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.89 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.88 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 99.88 | |
| PF14492 | 75 | EFG_II: Elongation Factor G, domain II; PDB: 1WDT_ | 99.87 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.87 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.86 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 99.86 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.85 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.84 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.83 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.82 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.82 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.79 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.79 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.79 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 99.78 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.78 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.78 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.76 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.76 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.76 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.76 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 99.75 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.75 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.75 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.75 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.75 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.74 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.74 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.74 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.74 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.74 | |
| cd03689 | 85 | RF3_II RF3_II: this subfamily represents the domai | 99.74 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.73 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.73 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.73 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.73 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.73 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.73 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.72 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.72 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.72 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 99.72 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.72 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.72 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.72 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.72 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.72 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.71 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.71 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.71 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.71 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.71 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.71 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.71 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.71 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.71 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.7 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.7 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.7 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.7 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.7 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.7 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.7 | |
| cd04091 | 81 | mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri | 99.7 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.7 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.7 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.7 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.7 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.7 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.7 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.7 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.7 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.7 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.69 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.69 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.69 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.69 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.69 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.69 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.69 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.69 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.69 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.68 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.68 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.68 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.67 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.67 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.67 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.67 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.67 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.67 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.67 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.67 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.67 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.67 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.67 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.67 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.67 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.67 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.67 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.67 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.67 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.67 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.67 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.67 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.66 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.66 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.66 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.66 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.66 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.66 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 99.66 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.66 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.66 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.66 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.65 | |
| cd03699 | 86 | lepA_II lepA_II: This subfamily represents the dom | 99.65 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.65 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.65 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.65 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.65 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.65 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.65 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.65 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.65 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.65 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.65 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.64 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.64 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.64 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.64 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.64 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.64 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.64 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.64 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.64 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.64 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.64 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.63 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.63 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.63 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.63 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.63 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.63 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.63 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.62 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.62 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.62 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.62 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.62 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.62 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.61 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.61 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.61 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.61 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.61 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.6 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.6 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.6 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.6 | |
| cd03700 | 93 | eEF2_snRNP_like_II EF2_snRNP_like_II: this subfami | 99.59 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.59 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.58 | |
| cd04090 | 94 | eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C termina | 99.57 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.56 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.56 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.56 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.56 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.55 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.53 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.52 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.52 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.52 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.52 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.51 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.51 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.5 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.5 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.5 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.49 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.49 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.48 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.48 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.47 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.47 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.47 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.46 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.46 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.46 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.46 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.44 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.43 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.43 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.42 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.39 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.39 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.39 | |
| PRK13768 | 253 | GTPase; Provisional | 99.37 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.37 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.37 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.34 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.33 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.32 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.32 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.31 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.31 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.29 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.25 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.25 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.25 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.23 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.23 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.2 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.2 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.2 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.19 | |
| PTZ00099 | 176 | rab6; Provisional | 99.19 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.18 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.16 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.15 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.13 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.13 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.12 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.11 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.1 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.1 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.09 | |
| PF03144 | 74 | GTP_EFTU_D2: Elongation factor Tu domain 2; InterP | 99.09 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.08 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.06 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.01 | |
| cd03693 | 91 | EF1_alpha_II EF1_alpha_II: this family represents | 99.0 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.97 | |
| cd03698 | 83 | eRF3_II_like eRF3_II_like: domain similar to domai | 98.94 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.93 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.92 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.92 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.88 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.86 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.86 | |
| cd01342 | 83 | Translation_Factor_II_like Translation_Factor_II_l | 98.85 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.85 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.84 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.83 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.78 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.78 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.77 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.77 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.76 | |
| cd04089 | 82 | eRF3_II eRF3_II: domain II of the eukaryotic class | 98.72 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.7 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.7 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.66 | |
| KOG0052 | 391 | consensus Translation elongation factor EF-1 alpha | 98.65 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.63 | |
| cd03695 | 81 | CysN_NodQ_II CysN_NodQ_II: This subfamily represen | 98.62 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.61 | |
| cd03696 | 83 | selB_II selB_II: this subfamily represents the dom | 98.61 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.6 | |
| cd03697 | 87 | EFTU_II EFTU_II: Elongation factor Tu domain II. E | 98.6 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 98.6 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.59 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.59 | |
| cd03694 | 87 | GTPBP_II Domain II of the GP-1 family of GTPase. T | 98.57 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.57 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.55 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.4 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.32 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.31 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.31 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.28 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.27 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.24 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.24 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 98.24 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.24 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.23 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.19 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.18 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 98.17 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.15 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.15 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.15 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.15 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.14 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.14 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.11 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.11 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.09 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.09 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.08 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 98.08 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.08 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.06 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.06 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.05 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.04 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.03 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.01 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.0 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.0 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.0 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.97 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.96 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.94 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.94 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.93 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.9 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.89 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.89 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.89 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.88 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 97.86 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.85 | |
| cd03702 | 95 | IF2_mtIF2_II This family represents the domain II | 97.85 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.83 | |
| cd03688 | 113 | eIF2_gamma_II eIF2_gamma_II: this subfamily repres | 97.83 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.82 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.81 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 97.78 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 97.77 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.77 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.75 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.71 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.71 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.7 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.68 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.68 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.68 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 97.64 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.64 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.63 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.63 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 97.6 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.59 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.58 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 97.57 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.56 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.56 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.55 | |
| cd03703 | 110 | aeIF5B_II aeIF5B_II: This family represents the do | 97.54 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.53 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.53 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.5 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.5 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.47 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.46 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 97.45 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.44 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.41 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 97.38 | |
| PRK08099 | 399 | bifunctional DNA-binding transcriptional repressor | 97.38 | |
| cd03701 | 95 | IF2_IF5B_II IF2_IF5B_II: This family represents th | 97.34 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.32 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.32 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 97.29 | |
| PF14578 | 81 | GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1 | 97.25 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.23 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.23 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 97.22 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.13 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.09 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 97.09 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.08 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.06 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 97.06 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.03 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.03 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.03 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.01 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.98 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 96.98 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 96.96 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 96.95 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 96.92 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 96.91 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 96.88 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 96.87 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.81 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 96.72 | |
| KOG4181 | 491 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 96.65 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 96.64 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 96.6 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 96.59 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 96.54 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 96.54 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 96.52 | |
| PRK13695 | 174 | putative NTPase; Provisional | 96.48 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.46 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 96.43 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 96.41 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 96.22 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 96.22 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 96.2 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 96.2 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 96.15 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 96.11 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 96.09 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 95.9 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 95.88 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.81 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 95.8 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 95.74 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 95.74 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 95.73 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 95.7 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 95.65 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 95.64 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 95.61 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 95.59 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 95.57 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 95.57 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 95.46 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 95.44 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 95.43 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 95.36 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 95.19 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.16 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penulti | 95.12 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 95.11 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 95.09 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 95.02 |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-98 Score=774.02 Aligned_cols=485 Identities=55% Similarity=0.876 Sum_probs=459.0
Q ss_pred hccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEc
Q 008294 82 KRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (571)
Q Consensus 82 ~~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liD 161 (571)
....+.+++|||+|+.|.++||||+.++++|++|.+..++++..+.+.||+++.|++||+|++.+...+.|.++++|+||
T Consensus 31 ~~~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiID 110 (721)
T KOG0465|consen 31 NARIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIID 110 (721)
T ss_pred cccCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEec
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.||.-+++++++..|++|+|+|+..|++.||..+|++++++++|.+.++||||+.++++.+++++|..+|..+++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l 321 (571)
+|+|++.+.+|.|++|++.+++++|++++ |......++|+++.+.+.+.|++|+|.+++.||++.|.||++.+.+.++|
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~-g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l 269 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGEN-GEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQL 269 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCC-CceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999874 55666699999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCC-CeEEEEEEEeec
Q 008294 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDE-PFAGLAFKIMSD 400 (571)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~V~k~~~d 400 (571)
..++++.+..+.|+||+||||++|.||+.|||+++++||+|.|...+......+..+...+....++ ||++++||+..+
T Consensus 270 ~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g 349 (721)
T KOG0465|consen 270 KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEG 349 (721)
T ss_pred HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeec
Confidence 9999999999999999999999999999999999999999999888766521112222333333444 999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCC-CCcccc
Q 008294 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDA-DHPILL 479 (571)
Q Consensus 401 ~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~-~~~~~l 479 (571)
++ |.+.|+|||+|+|++||.|||.++++++|+.+|++||++..++|+++.|||||++.|+ ++.+|||+.+. .....+
T Consensus 350 ~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m 427 (721)
T KOG0465|consen 350 RF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSM 427 (721)
T ss_pred Cc-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCcccccee
Confidence 99 9999999999999999999999999999999999999999999999999999999999 79999999998 667889
Q ss_pred cCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecC
Q 008294 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPK 559 (571)
Q Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p 559 (571)
.++.+|+||++++|+|.+..|.++|++||.++.+|||||+++.|.|++|++|+|||||||||..+||+++||+++.++.|
T Consensus 428 ~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp 507 (721)
T KOG0465|consen 428 ESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKP 507 (721)
T ss_pred eeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEec
Q 008294 560 STIVKAFLKS 569 (571)
Q Consensus 560 ~i~yke~~~~ 569 (571)
+|.|||+|.+
T Consensus 508 ~VayRETi~~ 517 (721)
T KOG0465|consen 508 QVAYRETITS 517 (721)
T ss_pred eeeehhhcCC
Confidence 9999999975
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-96 Score=803.62 Aligned_cols=480 Identities=65% Similarity=1.053 Sum_probs=459.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~ 165 (571)
.+++|||+|+||.+||||||+++|++.+|.+.+.|+++.|++++|++++|++||+|+.++..++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.||..++.++++.+|++|+||||.+|+++||+.+|+++.++++|.++|+||||+..+++..++++++++|+..+.++++|
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
|+.++.|.|++|++.++++.|+. |..+...++|++..+...++|..++|.+++.|+++|++|++|.+++.+++...+
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~---~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGD---GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcC---CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 99999999999999999999984 444444678899999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++.+..+.++|++|+||++|.|++.|||++++++|+|.+.+.+.+...+........+++.++|++++|||+..|+++|+
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 99999999999999999999999999999999999999998877764433333333466789999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 485 (571)
++|+|||||+|++||.|+|...++++||.+|+.|+|+++++++++.||||+++.||+++.+|||+|+...++.+.++.+|
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~~p 403 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFP 403 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988867889999999
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEE
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKA 565 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke 565 (571)
+|+++++|+|+++.|++||.++|++|++|||++++++|+||||++|+||||||||++++||+++||||+++++|+|.|||
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrE 483 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRE 483 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 008294 566 FLKS 569 (571)
Q Consensus 566 ~~~~ 569 (571)
||+.
T Consensus 484 Ti~~ 487 (697)
T COG0480 484 TIRK 487 (697)
T ss_pred eecc
Confidence 9985
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-88 Score=758.43 Aligned_cols=486 Identities=70% Similarity=1.105 Sum_probs=457.0
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
...+++|||+|+||+|+|||||+++|++.+|.+...|.+..|++++|+.+.|+++|+|++....++.|++++++||||||
T Consensus 5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG 84 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPG 84 (693)
T ss_pred CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCC
Confidence 35677999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++.++++.+|++|+|||+.+|++.|++.+|..+...++|+++|+||+|+..+++.++++++++.++....+.++
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQL 164 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
|++...+|.|++|++.+.++.|.....|..+...++|..+.+....+|..|+|.+++.||++|++||+|++++.+++...
T Consensus 165 pisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~ 244 (693)
T PRK00007 165 PIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAA 244 (693)
T ss_pred cCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHH
Confidence 99999999999999999999997544677788888999888889999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCc
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G 404 (571)
+++++..+.++||+|+||+++.|++.|||+|++++|+|.+++...+...+.......+.|++++|++++|||+.+|++.|
T Consensus 245 l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 324 (693)
T PRK00007 245 LRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVG 324 (693)
T ss_pred HHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCC
Confidence 99999999999999999999999999999999999999886654432111122345577899999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCC
Q 008294 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (571)
Q Consensus 405 ~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
+++|+|||||+|++||.|++...++.++|++|+.+.|+++.+|++|.|||||+|.|++++.+||||++...+..++++.+
T Consensus 325 ~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~~~ 404 (693)
T PRK00007 325 KLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESMEF 404 (693)
T ss_pred cEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCCCC
Confidence 99999999999999999999888888999999999999999999999999999999999999999998877777888889
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
|.|+++++|+|.++.|.+||.++|++|++|||+|+|.+|+||||++|+||||+|||++++||+++|++++++++|.|.||
T Consensus 405 ~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yr 484 (693)
T PRK00007 405 PEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYR 484 (693)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 008294 565 AFLKSL 570 (571)
Q Consensus 565 e~~~~~ 570 (571)
|+|.+.
T Consensus 485 ETi~~~ 490 (693)
T PRK00007 485 ETIRKK 490 (693)
T ss_pred ecccCc
Confidence 999753
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-87 Score=752.89 Aligned_cols=484 Identities=69% Similarity=1.108 Sum_probs=457.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+++|||+|+||+|+|||||+++|++.+|.+.+.|.+..|++++|+.++|++||+|++....++.|++++++|||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 45679999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|..++.++++.+|++|+|||+.+|++.+++.+|..+...++|.++++||+|+..+++.++++++++.++....+.++|
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
++...+|.|++|++.++.+.|.....|..+...++|..+.+...++|+.|+|.+++.||++||+||+|.+++.+++...+
T Consensus 164 is~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l 243 (691)
T PRK12739 164 IGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAI 243 (691)
T ss_pred ccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999976555677888899999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++....+.++||+++||++|.|++.|||+|++++|+|.+++..+.....+. ....+.|++++|++++|||+++|++.|+
T Consensus 244 ~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 322 (691)
T PRK12739 244 RKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTE-EEIERPASDDEPFAALAFKIMTDPFVGR 322 (691)
T ss_pred HHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCC-cceeeccCCCCCeEEEEEEeeeCCCCCe
Confidence 999999999999999999999999999999999999988766554322111 3456788999999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 485 (571)
++|+|||||+|++||.|++...++.+++++|+.++|+++.+++++.|||||+|.|++++.+||||++...+..++++.+|
T Consensus 323 i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~~~ 402 (691)
T PRK12739 323 LTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFP 402 (691)
T ss_pred EEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999988777788889999
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEE
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKA 565 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke 565 (571)
.|+++++|+|.++.|++||.+||++|++|||+|++++|+||||++|+||||||||++++||+++|++++++++|.|.|||
T Consensus 403 ~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yrE 482 (691)
T PRK12739 403 EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRE 482 (691)
T ss_pred CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 008294 566 FLKSL 570 (571)
Q Consensus 566 ~~~~~ 570 (571)
+|++.
T Consensus 483 ti~~~ 487 (691)
T PRK12739 483 TITKS 487 (691)
T ss_pred ccCCc
Confidence 99863
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-86 Score=748.10 Aligned_cols=484 Identities=63% Similarity=1.013 Sum_probs=456.5
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
...+++|||+|+||+|+|||||+|+|++.+|.+.+.+++.+|++++|+.+.|+++|+|++.....+.|++++++||||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 45678999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++..+++.+|++++|||+.+|+..+++.+|+.+...++|+++|+||+|+..+++.+++++|++.++....+.++
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
|++...+|.|++|++.++.++|.. ..++.+...++++++.+.+..+|+.|+|.+++.||++||+|++|++++.+++...
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNG-DKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred ccccCCCceEEEECccceEEeccc-CCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 999999999999999999998875 3688888999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCc
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVG 404 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G 404 (571)
+++++..+.++||+++||++|.|++.|||+|++++|+|.+++...+... +......+.|++++|++|+|||+.+|++.|
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G 322 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP-DTEKEIERKASDDEPFSALAFKVATDPFVG 322 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCC-CCCceeeecCCCCCceEEEEEEeeecCCCC
Confidence 9999999999999999999999999999999999999987655443222 112345577899999999999999999999
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCC
Q 008294 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (571)
Q Consensus 405 ~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
+++|+|||||+|+.||.|++...++.+++++|+.+.|+++.+++++.|||||+|.|++++.+||||++...+..++++.+
T Consensus 323 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 402 (689)
T TIGR00484 323 QLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEF 402 (689)
T ss_pred eEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCCC
Confidence 99999999999999999999988888999999999999999999999999999999999999999998887778888889
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
|+|+++++|+|.++.|++||.++|++|++|||+|+|.+|+||||++|+||||+|||++++||+++||+++++++|.|.||
T Consensus 403 ~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yr 482 (689)
T TIGR00484 403 PEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYR 482 (689)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 008294 565 AFLKSL 570 (571)
Q Consensus 565 e~~~~~ 570 (571)
|+|++.
T Consensus 483 Eti~~~ 488 (689)
T TIGR00484 483 ETIRSK 488 (689)
T ss_pred ecccCc
Confidence 999754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-84 Score=727.90 Aligned_cols=483 Identities=52% Similarity=0.897 Sum_probs=453.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+++|||+|+||.|+|||||+++|++.+|.+...+.+..|++.+|+.+.|+++|+|+......+.|+++.++|||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 45678999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|..++..+++.+|++++|+|+.++...++..+|+.+...++|+++|+||+|+.++++.++++++++.++..+.++++|
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
++.+..|.|++|++.++++.|.....+..+...++|..+.+....++..++|.+++.||+++|+|+++.+++.+++...+
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 99999999999999999999976544666777888998999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++++..+.++||||+||++|.|++.|||+|++++|+|.+++..+... +......+.|++++|++++|||+..++++|+
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~ 321 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--DNGKPVKVDPDPEKPLLALVFKVQYDPYAGK 321 (687)
T ss_pred HHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC--CCCCceeecCCCCCCeEEEEEEeeecCCCce
Confidence 99999999999999999999999999999999999998765544321 1112234678899999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~ 485 (571)
++|+|||||+|++||.|++.+.++.+++++|+.++|+++.++++|.||||+++.|++++.+||||++...+..++++.+|
T Consensus 322 i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~~~ 401 (687)
T PRK13351 322 LTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFP 401 (687)
T ss_pred EEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCCCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999988777777788899
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEE
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKA 565 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke 565 (571)
.|+++++|+|.++.|.+||.+||++|++|||+|++++|+||||++|+||||||||++++||+++|++++++++|.|.|||
T Consensus 402 ~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~E 481 (687)
T PRK13351 402 EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRE 481 (687)
T ss_pred CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 008294 566 FLKSL 570 (571)
Q Consensus 566 ~~~~~ 570 (571)
+|++.
T Consensus 482 ti~~~ 486 (687)
T PRK13351 482 TIRKM 486 (687)
T ss_pred ecccc
Confidence 99863
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-81 Score=678.01 Aligned_cols=449 Identities=31% Similarity=0.507 Sum_probs=410.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeec---Cc-ccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE---GT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~---g~-~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
..++|||+|+||+|+|||||+++|++.+|.+...|.+.. ++ +++|+++.|++||+|+......+.|+++.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 356899999999999999999999999999988888763 22 55899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
|||.+|..++.++++.+|++|+|+|+.+|+..+++.+|+.+...++|+++|+||+|+..+++.++++++++.|+.+++|+
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
++||+.+.+|+|++|++.++++.|... .|.. ..+.|.+++.||++|++|++++.+ +++.
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~-~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~ 225 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPG-EGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLR 225 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccC-CCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHH
Confidence 999999999999999999999999532 1211 134567889999999999998755 6666
Q ss_pred HHH-----------HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeE
Q 008294 323 KLI-----------RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFA 391 (571)
Q Consensus 323 ~~l-----------~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 391 (571)
+.+ ++++..+.++|||||||++|.||+.|||.|++++|+|.++... ...+.+ .+.+++
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~-~~~~~~ 294 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD----------EREVEP-TEEKFS 294 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc----------ceeecC-CCCceE
Confidence 666 8889999999999999999999999999999999999864321 011222 345799
Q ss_pred EEEEEEe---ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccc
Q 008294 392 GLAFKIM---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (571)
Q Consensus 392 ~~V~k~~---~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gd 468 (571)
++|||+. .++++|+++|+|||||+|+.|+.|+|.++++.+|+++++.++|.++++|++|.||||+++.|++++++||
T Consensus 295 ~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GD 374 (526)
T PRK00741 295 GFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGD 374 (526)
T ss_pred EEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCC
Confidence 9999998 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHh
Q 008294 469 TLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKR 548 (571)
Q Consensus 469 tl~~~~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~ 548 (571)
|||+.+ +..++++++|.|+++++|+|+++.|++||.+||++|++||| +++.+|++|||++|+||||+||||+++||++
T Consensus 375 TL~~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ 452 (526)
T PRK00741 375 TFTQGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKN 452 (526)
T ss_pred CccCCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 999866 77788999999999999999999999999999999999995 9999999999999999999999999999999
Q ss_pred HhCceEEEecCeEEEEEEEec
Q 008294 549 EFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 549 ~~~vev~~~~p~i~yke~~~~ 569 (571)
+||+++.+++|.|.+-.||..
T Consensus 453 ey~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 453 EYNVEAIYEPVGVATARWVEC 473 (526)
T ss_pred HhCCEEEEecCCccEEEEEeC
Confidence 999999999999999999964
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-78 Score=680.20 Aligned_cols=468 Identities=57% Similarity=0.916 Sum_probs=439.0
Q ss_pred EcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHH
Q 008294 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (571)
Q Consensus 96 vG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 175 (571)
+||+|+|||||+++|++.+|.+...|.++.|.+++|+.+.|+++|+|+......+.|+++.++|||||||.+|..++..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999999988888888888999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCCccee
Q 008294 176 LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~ 255 (571)
++.+|++++|+|+..+...++..+|..+...++|+++|+||+|+..++..++++++++.++....+.++|+..+..|.++
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred eecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcce
Q 008294 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFV 335 (571)
Q Consensus 256 id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~ 335 (571)
+|++.++.++|+ .+..+...+.|+...+....++..++|.+++.||+++++|+++.+++.+++...+++.+..+.++
T Consensus 161 id~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 161 VDLLSMKAYRYD---EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred EECccceEEEec---CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 999999999998 25667777888888888888999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecce
Q 008294 336 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGT 415 (571)
Q Consensus 336 Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~ 415 (571)
|||++||++|.|++.|||+|.+++|+|.+++...+.. ........|++++|++++|||+++++++|+++++|||+|+
T Consensus 238 Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~---~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~ 314 (668)
T PRK12740 238 PVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGED---GEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGT 314 (668)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChhhcccccCCC---CccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeE
Confidence 9999999999999999999999999998755432211 1122345688999999999999999999999999999999
Q ss_pred eCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCCCceEEEEEEe
Q 008294 416 LSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495 (571)
Q Consensus 416 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv~~~avep 495 (571)
|++||.|++.+.++.+++++|+.++|++..++++|.||||+++.|++++.+||||++...+..++++.+++|+++++|+|
T Consensus 315 L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p 394 (668)
T PRK12740 315 LKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEP 394 (668)
T ss_pred EcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEE
Confidence 99999999998888899999999999999999999999999999999999999999877777888889999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEEEec
Q 008294 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 496 ~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~~~~ 569 (571)
.+++|.++|.++|++|+++||+|++++|+++||++|+|+||+|||++++||+++|++++.+++|.|.|||+|.+
T Consensus 395 ~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~ 468 (668)
T PRK12740 395 KDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRK 468 (668)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=646.35 Aligned_cols=452 Identities=29% Similarity=0.455 Sum_probs=399.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cC---cccccchhhhhhhceeEeeceEEEeecCeEEEEEc
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EG---TATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g---~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liD 161 (571)
...++|||+|+||+|+|||||+++|++.+|.+...|.+. .| .+++|+++.|++||+|+......+.|++++++|||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 345789999999999999999999999999998888876 33 37899999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+..|+..+++.+|+.++..++|+++|+||+|+..++..++++++++.++..+.+
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeee-----cccHH----HHHHHHHHHHHHHHHHhhcCHHHHHHHhc
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE-----DIPAN----LQKMAQEYRSQMIETIVELDDEAMESYLE 312 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~-----~~~~~----~~~~~~~~~~~l~e~~~~~~~~l~e~~l~ 312 (571)
+++||+.+..|.|++|++.++.+.|.....|+..... ..|.. ..+..+.+|+.+ |.+.+.++
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~-------- 237 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASN-------- 237 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcc--------
Confidence 9999999999999999999999999654333322211 11211 122344555555 66665554
Q ss_pred CCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEE
Q 008294 313 GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 392 (571)
Q Consensus 313 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 392 (571)
+++ ++++..+.++|||||||++|.||+.|||.|++++|+|.++... ...+.+ .+.+|++
T Consensus 238 --~~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~----------~~~~~~-~~~~~~~ 296 (527)
T TIGR00503 238 --EFD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD----------TRTVEP-TEEKFSG 296 (527)
T ss_pred --ccC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC----------ceecCC-CCCCeeE
Confidence 222 3556778999999999999999999999999999999864321 012233 4677999
Q ss_pred EEEEEee--c-CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 393 LAFKIMS--D-PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 393 ~V~k~~~--d-~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
+|||+.. | +++|+++|+|||||+|+.|+.|++.++++++|+++++.++|.++++|++|.||||+++.|++++++|||
T Consensus 297 ~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDt 376 (527)
T TIGR00503 297 FVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDT 376 (527)
T ss_pred EEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCE
Confidence 9999998 7 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhH
Q 008294 470 LCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKRE 549 (571)
Q Consensus 470 l~~~~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~ 549 (571)
||+ ..+..+.++++|.|+++++|+|+++.|++||.+||++|++||| +++.+|++|+|++|+|||||||||+++||+++
T Consensus 377 l~~-~~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~e 454 (527)
T TIGR00503 377 FTQ-GEKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEE 454 (527)
T ss_pred ecC-CCceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHH
Confidence 998 4467788899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred hCceEEEecCeEEEEEEEec
Q 008294 550 FKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 550 ~~vev~~~~p~i~yke~~~~ 569 (571)
|||++.+++|.|..--||..
T Consensus 455 y~v~v~~~~~~v~~~rw~~~ 474 (527)
T TIGR00503 455 YNVEARYEPVNVATARWVEC 474 (527)
T ss_pred hCCeEEEeCCCceEEEEEcC
Confidence 99999999999999988863
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-76 Score=669.31 Aligned_cols=473 Identities=29% Similarity=0.406 Sum_probs=391.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------- 153 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------- 153 (571)
...+++|||+|+||+|+|||||+++|++.+|.+... ...+++++|+.++|++||+|+..+..++.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 356789999999999999999999999999976653 3344566999999999999999999888884
Q ss_pred -----CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc-------c
Q 008294 154 -----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL-------G 221 (571)
Q Consensus 154 -----~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~-------~ 221 (571)
++.++|||||||.||..++.++++.+|++|+|||+.+|+..||+.+|+++...++|+++|+||+|+. .
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~ 171 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ----cchhhhHHHHH---HHhCCcce-eeec-cCCCC----CCccee------------------eecccceeE---Eec
Q 008294 222 ----ANFFRTRDMIV---TNLGAKPL-VVQL-PVGAE----DNFKGV------------------VDLVKMKAI---IWS 267 (571)
Q Consensus 222 ----~~~~~~~~~i~---~~l~~~~~-~~~~-pi~~~----~~~~~~------------------id~~~~~~~---~~~ 267 (571)
+++.+++++++ ..++.... ++++ |+..+ ..+.++ +|.+..+.| +|+
T Consensus 172 ~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~ 251 (843)
T PLN00116 172 EEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEc
Confidence 66888999998 22321111 2233 55442 222333 344433333 443
Q ss_pred CCCCCceeeeec--ccHHH---HHHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCCCHHHHHHHHHhhcccCcceeeeec
Q 008294 268 GEELGAKFAYED--IPANL---QKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIKKLIRKGTIAGSFVPVLCG 340 (571)
Q Consensus 268 ~~~~g~~~~~~~--~~~~~---~~~~~~~~~~l~e~~~~~~~~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~ 340 (571)
.. +..+...+ .+... .+.+.+.+..++|.+++.|+++|++|+++ ..++.+++.. +++.+....+.|+|++
T Consensus 252 ~~--~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~ 328 (843)
T PLN00116 252 PA--TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPA 328 (843)
T ss_pred CC--CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCC
Confidence 31 33344443 33222 22334578999999999999999999997 5899999988 9999999999999986
Q ss_pred cccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEEecc
Q 008294 341 SAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAG 414 (571)
Q Consensus 341 Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV~sG 414 (571)
| +.|||+|++++|+|.+++..+.. ...+......+.|++++|++++|||+..+++.|+ ++|+|||||
T Consensus 329 s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysG 401 (843)
T PLN00116 329 S-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (843)
T ss_pred h-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEee
Confidence 6 88999999999999875433211 0012223456789999999999999999998888 999999999
Q ss_pred eeCCCCEEE----eCCCCce-----eecceEEEeccCceeecCeecCCCEEEEeCCCCccc-cceecCCC--CcccccCC
Q 008294 415 TLSAGSYVL----NANKGKK-----ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT-GETLCDAD--HPILLERM 482 (571)
Q Consensus 415 ~l~~gd~v~----~~~~~~~-----~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~-Gdtl~~~~--~~~~l~~~ 482 (571)
+|+.||.|+ |...++. +++++|+.++|+++++|++|.|||||+|.|+++..+ |||||+.. .+..+.++
T Consensus 402 tL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~ 481 (843)
T PLN00116 402 TVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAM 481 (843)
T ss_pred eecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCcccccc
Confidence 999999998 4444433 589999999999999999999999999999998654 99999876 56778888
Q ss_pred CCC-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh--CceEEEecC
Q 008294 483 DFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF--KKLMLVHPK 559 (571)
Q Consensus 483 ~~~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~--~vev~~~~p 559 (571)
.+| +|+++++|||.+++|++||.+||++|++|||+|++.. +||||++|+||||+|||++++||+++| ||++++++|
T Consensus 482 ~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p 560 (843)
T PLN00116 482 KFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDP 560 (843)
T ss_pred ccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 898 9999999999999999999999999999999999965 899999999999999999999999999 999999999
Q ss_pred eEEEEEEEecC
Q 008294 560 STIVKAFLKSL 570 (571)
Q Consensus 560 ~i~yke~~~~~ 570 (571)
.|.|||||.+.
T Consensus 561 ~V~yrETI~~~ 571 (843)
T PLN00116 561 VVSFRETVLEK 571 (843)
T ss_pred eEEEEeccccc
Confidence 99999999753
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-75 Score=662.69 Aligned_cols=467 Identities=28% Similarity=0.446 Sum_probs=396.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc-ccccchhhhhhhceeEeeceEEEeec----------C
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWN----------K 154 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~g~t~~~~~~~~~~~----------~ 154 (571)
..+++|||+|+||+|+|||||+++|++.+|.+... ..|+ +++|+.++|++||+|+..+...+.|. +
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQP 91 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCc
Confidence 35779999999999999999999999998876553 3344 45899999999999999998888886 6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc----c-------cc
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL----G-------AN 223 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~-------~~ 223 (571)
+.++|+|||||.+|..++..+++.+|++|+|||+.+|+..|++.+|+.+...++|+++|+||+|+. + ++
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~ 171 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQN 171 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999998 3 77
Q ss_pred hhhhHHHHHHHhC-----------CcceeeeccCCCCC--------Ccce--------eeecccceeE---EecCCCCCc
Q 008294 224 FFRTRDMIVTNLG-----------AKPLVVQLPVGAED--------NFKG--------VVDLVKMKAI---IWSGEELGA 273 (571)
Q Consensus 224 ~~~~~~~i~~~l~-----------~~~~~~~~pi~~~~--------~~~~--------~id~~~~~~~---~~~~~~~g~ 273 (571)
+.+++++++..++ ..+.+.++|++... .|.+ .++.+.+..| +|+. .+.
T Consensus 172 ~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~--~~~ 249 (836)
T PTZ00416 172 FVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA--KTK 249 (836)
T ss_pred HHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC--CCC
Confidence 8999999998775 26778899997765 2333 3344444333 4432 234
Q ss_pred eeeeec-------ccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhc--CCCCCHHHH--HH-HHHhhcccCcceeeeecc
Q 008294 274 KFAYED-------IPANLQKMAQEYRSQMIETIVELDDEAMESYLE--GNEPDEETI--KK-LIRKGTIAGSFVPVLCGS 341 (571)
Q Consensus 274 ~~~~~~-------~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~~S 341 (571)
.+...+ .|..+.+.+.+.+..|+|.+++.||++|++|++ |.+++.+++ .. .+.+.+. +.++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv---- 324 (836)
T PTZ00416 250 KWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA---- 324 (836)
T ss_pred EEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch----
Confidence 444333 344566788889999999999999999999999 778898884 22 4555555 789997
Q ss_pred ccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEEecce
Q 008294 342 AFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGT 415 (571)
Q Consensus 342 a~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV~sG~ 415 (571)
++.|||+|++++|+|.+++..+.. ..++......+.|++++|++++|||+..+++.|+ ++|+|||||+
T Consensus 325 ------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGt 398 (836)
T PTZ00416 325 ------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGT 398 (836)
T ss_pred ------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeee
Confidence 799999999999999876543211 0112223456789999999999999999999999 8999999999
Q ss_pred eCCCCEEE----eCCCCcee-----ecceEEEeccCceeecCeecCCCEEEEeCCCC--ccccceecCCCCcccccCCCC
Q 008294 416 LSAGSYVL----NANKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITGETLCDADHPILLERMDF 484 (571)
Q Consensus 416 l~~gd~v~----~~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
|+.||.|+ +...+..+ +|++|+.++|++..+|++|.|||||+|.|+++ ..+| |||+...+..+.++.+
T Consensus 399 L~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~ 477 (836)
T PTZ00416 399 VATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKY 477 (836)
T ss_pred ecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCccccccccc
Confidence 99999998 44444444 49999999999999999999999999999998 7889 9998877777888888
Q ss_pred C-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecCeEE
Q 008294 485 P-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPKSTI 562 (571)
Q Consensus 485 ~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p~i~ 562 (571)
+ +|+++++|+|.+++|++||.++|++|++|||++.+.. +||||++|+||||+|||++++||+++| +|++++++|.|.
T Consensus 478 ~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~ 556 (836)
T PTZ00416 478 SVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVS 556 (836)
T ss_pred CCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEE
Confidence 6 9999999999999999999999999999999999966 899999999999999999999999999 899999999999
Q ss_pred EEEEEecC
Q 008294 563 VKAFLKSL 570 (571)
Q Consensus 563 yke~~~~~ 570 (571)
|||||.+.
T Consensus 557 yrETI~~~ 564 (836)
T PTZ00416 557 YRETVTEE 564 (836)
T ss_pred EEEEeccc
Confidence 99999764
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=589.15 Aligned_cols=471 Identities=41% Similarity=0.675 Sum_probs=436.2
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..++|||+|+.|.++||||..++++|..|++...|.+++|.++.|+...|++||+|+++..++++|+++++|+||||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.||.-++++.++..|+++.|+|++.|++.||..+|+++.++++|.++++||||+..++++..++++++++|..++.+++|
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-ceeeecccceeEEec-CCCCCceeeeecc----cHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC-----C
Q 008294 246 VGAEDNF-KGVVDLVKMKAIIWS-GEELGAKFAYEDI----PANLQKMAQEYRSQMIETIVELDDEAMESYLEG-----N 314 (571)
Q Consensus 246 i~~~~~~-~~~id~~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~-----~ 314 (571)
|++...| +|++|++..+.+.|. .+++|..|...++ ..++.+...+.+..|.|.+++.|+++..+++++ .
T Consensus 193 i~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d 272 (753)
T KOG0464|consen 193 IGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFD 272 (753)
T ss_pred ccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccc
Confidence 9999999 899999998888883 4567888877663 446667777889999999999999999988874 5
Q ss_pred CCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 315 EPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 315 ~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
.++.+++...+++........|++||||.++.|++.|||++.-++|+|.+++....- =....+.++.
T Consensus 273 ~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflq-------------wykddlcala 339 (753)
T KOG0464|consen 273 KIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQ-------------WYKDDLCALA 339 (753)
T ss_pred ccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHh-------------hhhhhHHHHh
Confidence 688999999999999999999999999999999999999999999999886532111 0145678999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCC
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~ 474 (571)
||+.+|+.+|.++|.|||+|+++.+-.++|.+....+.+.+++.+.+++...|.++.||+|...+|++...+|||+..+.
T Consensus 340 fkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 340 FKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred hhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996332
Q ss_pred ------------------------CcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEE
Q 008294 475 ------------------------HPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTV 530 (571)
Q Consensus 475 ------------------------~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~i 530 (571)
....+..+++|.||+++.|||.+...+..+..+|+-|..||||+.+..|+++||++
T Consensus 420 asa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqti 499 (753)
T KOG0464|consen 420 ASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTI 499 (753)
T ss_pred hhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceE
Confidence 12346788999999999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEEEec
Q 008294 531 IEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 531 l~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~~~~ 569 (571)
++||||||+|.+.+|++++||+++-+++.+|-|||+|.+
T Consensus 500 l~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~ 538 (753)
T KOG0464|consen 500 LCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILE 538 (753)
T ss_pred EeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-70 Score=613.35 Aligned_cols=434 Identities=32% Similarity=0.476 Sum_probs=359.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----cCeEEEEEc
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIID 161 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~liD 161 (571)
..+++|||+++||+|+|||||+++|++.+|.+... ...+++++|+.++|++||+|+..+..++.| +++.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 45679999999999999999999999999987663 233467899999999999999999888877 478999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+.+|+..+++.+|+.+...++|.++|+||+|+..+++....+++++.++...
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII-- 171 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999989999999999999988776666666555443210
Q ss_pred eeccCCCCCCcceeeeccc-------------ceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVK-------------MKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
.++.++++.+. ...+.|.+...+|.+... .+.+..++. +++++
T Consensus 172 --------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~---------------~~~~~~~~~-~~l~e 227 (731)
T PRK07560 172 --------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVP---------------MMQKTGIKF-KDIID 227 (731)
T ss_pred --------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHH---------------HHHHhCCCH-HHHHH
Confidence 01111111111 122445555556655432 233444444 56888
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccc
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERA 383 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~ 383 (571)
.|.++ ..+++. .++|++ +.|||+|++++|+|.+++..+.. ...++.....+.
T Consensus 228 ~~~~~---~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (731)
T PRK07560 228 YYEKG---KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLN 284 (731)
T ss_pred HHhcC---CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeec
Confidence 88554 234432 126874 78999999999999876543211 011122234577
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~ 463 (571)
|++++|++++|||+..|++.|+++|+|||||+|++||.|++.+.+..+++++|+.++|++..++++|.|||||+|.|+++
T Consensus 285 ~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~ 364 (731)
T PRK07560 285 CDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKD 364 (731)
T ss_pred cCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccc
Confidence 89999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ccccceecCCCCcccccCC-CCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHH
Q 008294 464 TITGETLCDADHPILLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (571)
Q Consensus 464 ~~~Gdtl~~~~~~~~l~~~-~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~ 542 (571)
+.+||||++.....++.++ .+|+|+++++|+|.++.|++||.++|++|++|||+|++++|++|||++|+||||+|||++
T Consensus 365 ~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~ 444 (731)
T PRK07560 365 ARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVI 444 (731)
T ss_pred cccCCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHH
Confidence 9999999988777777776 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCceEEEecCeEEEEEEEecC
Q 008294 543 VDRLKREFKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 543 ~~rL~~~~~vev~~~~p~i~yke~~~~~ 570 (571)
++||+++|++++++++|.|.|||||.+.
T Consensus 445 ~~rL~~~~~vev~~~~p~V~yrETI~~~ 472 (731)
T PRK07560 445 TYRIKRDYGIEVVTSEPIVVYRETVRGK 472 (731)
T ss_pred HHHHHHHhCCceEecCCEEEEEEecccC
Confidence 9999999999999999999999999763
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=607.32 Aligned_cols=434 Identities=33% Similarity=0.463 Sum_probs=362.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEE----EeecCeEEEEEc
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT----TYWNKHRINIID 161 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~----~~~~~~~i~liD 161 (571)
..+++|||+++||.|+|||||+++|++.+|.+.+. ...+++++|+.++|+++|+|+.....+ +.|++++++|||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 44578999999999999999999999999887653 233446799999999999999987665 567889999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+.+...++|.++|+||+|+..+++..+++++++.|+.....
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 172 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITE 172 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999998765544
Q ss_pred eeccCCCC--CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhc-------
Q 008294 242 VQLPVGAE--DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLE------- 312 (571)
Q Consensus 242 ~~~pi~~~--~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~------- 312 (571)
++.++... +.+. ..+++..++.++.+++.|++
T Consensus 173 v~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 173 VNKLIKAMAPEEFR---------------------------------------DKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred HHhhhhccCCHHHh---------------------------------------hceEechhhCCHHHHhhhhcccccchh
Confidence 44443211 1110 11122233344455555544
Q ss_pred --CCCCCHHHHHHHHHhhcccC--cceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCcccccccc
Q 008294 313 --GNEPDEETIKKLIRKGTIAG--SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERA 383 (571)
Q Consensus 313 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~ 383 (571)
+..++.+++.+.+....... .++|+ ++.|||+|++++|+|.+++..+.. ..+++.....+.
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 44455556655555444333 47788 489999999999999875432211 111122345678
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~ 463 (571)
|++++|++++|||+..+++.|+++++|||||+|++||.|++.+.+..++|++|+.++|.+.+++++|.|||||+|.|+++
T Consensus 284 ~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 363 (720)
T TIGR00490 284 CDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363 (720)
T ss_pred CCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecCCCCcc-cccCC-CCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHH
Q 008294 464 TITGETLCDADHPI-LLERM-DFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEI 541 (571)
Q Consensus 464 ~~~Gdtl~~~~~~~-~l~~~-~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev 541 (571)
+.+|||||+.+.+. .++++ .+|+|+++++|+|.+++|++||.++|++|++|||+|++++|+||||++|+||||+|||+
T Consensus 364 ~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei 443 (720)
T TIGR00490 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEI 443 (720)
T ss_pred cccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHH
Confidence 99999999876543 45655 47899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCceEEEecCeEEEEEEEecC
Q 008294 542 IVDRLKREFKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 542 ~~~rL~~~~~vev~~~~p~i~yke~~~~~ 570 (571)
+++||+++||+++++++|.|.|||||.+.
T Consensus 444 ~~~rL~~~~~vev~~~~P~V~YrETi~~~ 472 (720)
T TIGR00490 444 IVEKIREDYGLDVETSPPIVVYRETVTGT 472 (720)
T ss_pred HHHHHHHHhCCceeecCCEEEEEEecccc
Confidence 99999999999999999999999999763
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=569.18 Aligned_cols=367 Identities=33% Similarity=0.496 Sum_probs=331.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
+|||+|+||+|||||||+++|++.+|.+...+.+.. +++|+.++|+++|+|+......+.|++++++|||||||.||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 589999999999999999999999998877665543 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
.++.++++.+|++++|||+.+|+..|++.+|..+...++|.++|+||+|+..+++.++++++.+.+..-
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----------- 147 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----------- 147 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-----------
Confidence 999999999999999999999999999999999999999999999999998877777777776654210
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
|. ++
T Consensus 148 ----------------------g~-----------------------------~~------------------------- 151 (594)
T TIGR01394 148 ----------------------GA-----------------------------DD------------------------- 151 (594)
T ss_pred ----------------------cc-----------------------------cc-------------------------
Confidence 00 00
Q ss_pred ccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 330 IAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
....+|++++||++|. |+..|++.|.+++|+|.. ++++||+++|++++.
T Consensus 152 -e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~--------------------~~~~pl~~~V~~i~~ 210 (594)
T TIGR01394 152 -EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG--------------------DLDEPLQMLVTNLDY 210 (594)
T ss_pred -ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC--------------------CCCCCEEEEEEEEEe
Confidence 0112589999999996 799999999999999953 247899999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCc
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP 476 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~ 476 (571)
++++|++++|||++|+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+.+.+
T Consensus 211 d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~ 290 (594)
T TIGR01394 211 DEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVP 290 (594)
T ss_pred eCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCcc
Confidence 99999999999999999999999988753 257899999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEEEeCCC---CCHHH------HHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHH
Q 008294 477 ILLERMDFPDPVIKVAIEPKTK---ADIDK------MANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLK 547 (571)
Q Consensus 477 ~~l~~~~~~~Pv~~~avep~~~---~d~~k------l~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~ 547 (571)
.+++++.+++|+++++++|.+. +++.| |.++|.|++++||+|+++.++++++++|+|+|||||+|++++||
T Consensus 291 ~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lr 370 (594)
T TIGR01394 291 EALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMR 370 (594)
T ss_pred ccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHh
Confidence 9999999999999999999865 44444 99999999999999999999999999999999999999999999
Q ss_pred hHhCceEEEecCeEEEEEEEe
Q 008294 548 REFKKLMLVHPKSTIVKAFLK 568 (571)
Q Consensus 548 ~~~~vev~~~~p~i~yke~~~ 568 (571)
++ |+|+.+++|+|+||| |.
T Consensus 371 re-g~e~~~~~P~V~yre-i~ 389 (594)
T TIGR01394 371 RE-GFELQVGRPQVIYKE-ID 389 (594)
T ss_pred cc-CceEEEeCCEEEEEe-CC
Confidence 99 999999999999999 64
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=561.02 Aligned_cols=368 Identities=30% Similarity=0.464 Sum_probs=332.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+++|||+|+||+|+|||||+++|++.+|.+...+.. ..+++|+.+.|+++|+|+......+.|+++.+++||||||.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~--~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET--QERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCccccccc--ceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 468999999999999999999999888876654432 238899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
|..++..+++.+|++|+|||+.+|+..+++.+|..+...++|.++|+||+|+..+++.++++++.+.|..-
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l--------- 151 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL--------- 151 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc---------
Confidence 99999999999999999999999999999999999999999999999999999888888888887765310
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
+. .
T Consensus 152 ---------~~----------------------------------------------------------~---------- 154 (607)
T PRK10218 152 ---------DA----------------------------------------------------------T---------- 154 (607)
T ss_pred ---------Cc----------------------------------------------------------c----------
Confidence 00 0
Q ss_pred hcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEE
Q 008294 328 GTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (571)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 397 (571)
....-+|++++||++|. |+..||+.|.+++|+|.. ++++||.++||++
T Consensus 155 --~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~--------------------~~~~Pl~~~V~k~ 212 (607)
T PRK10218 155 --DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--------------------DLDGPFQMQISQL 212 (607)
T ss_pred --ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEee
Confidence 00012689999999998 689999999999999953 2478999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCC-Cc--eeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCC
Q 008294 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANK-GK--KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDAD 474 (571)
Q Consensus 398 ~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~-~~--~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~ 474 (571)
+.++++|++++|||++|+|++||.|++.+. ++ .++|++|+.+.|.++.++++|.|||||+++|++++.+|||||+.+
T Consensus 213 ~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~ 292 (607)
T PRK10218 213 DYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQ 292 (607)
T ss_pred EecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCC
Confidence 999999999999999999999999998765 43 588999999999999999999999999999999999999999998
Q ss_pred CcccccCCCCCCceEEEEEEeCC---CCCHHHHHH---HHHHHHh---hCCeeEEEEeCCCCeEEEEEecHHHHHHHHHH
Q 008294 475 HPILLERMDFPDPVIKVAIEPKT---KADIDKMAN---GLIKLAQ---EDPSFHFSRDEEINQTVIEGMGELHLEIIVDR 545 (571)
Q Consensus 475 ~~~~l~~~~~~~Pv~~~avep~~---~~d~~kl~~---~L~kl~~---eDpsl~~~~~~etge~il~g~GelhLev~~~r 545 (571)
.+..++++++++|++++++.|++ .+|+.|+.. +|++|.+ +||+|+++.++++++++|+|+|||||+|++++
T Consensus 293 ~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~ 372 (607)
T PRK10218 293 NVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 372 (607)
T ss_pred CcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHH
Confidence 88889999999999999999999 789999865 5666666 99999999999999999999999999999999
Q ss_pred HHhHhCceEEEecCeEEEEEE
Q 008294 546 LKREFKKLMLVHPKSTIVKAF 566 (571)
Q Consensus 546 L~~~~~vev~~~~p~i~yke~ 566 (571)
||++ |+|+.+++|+|+|||+
T Consensus 373 lrre-g~e~~~~~P~V~yret 392 (607)
T PRK10218 373 MRRE-GFELAVSRPKVIFREI 392 (607)
T ss_pred HHhC-CceEEEeCCEEEEEEE
Confidence 9999 9999999999999997
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=552.10 Aligned_cols=362 Identities=31% Similarity=0.453 Sum_probs=324.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEEEc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 161 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liD 161 (571)
.+++|||+|+||+|+|||||+++|++.+|.+...+ .+++++|+.++|+++|+|+......+.|. ++.++|||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 45789999999999999999999999988776532 35789999999999999999998888875 68899999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+++|++.++...|..+...++|+++|+||+|+..++..++.+++++.++..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 157 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--- 157 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999888999999999999987665544444444433220
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l 321 (571)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecC
Q 008294 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (571)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 401 (571)
..+++++||++|.|+++|+++|.+.+|+|.. ++++|+.++||+++.|+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~--------------------~~~~pl~~~Vfd~~~d~ 205 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG--------------------DPDAPLKALIFDSWYDN 205 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhCccccC--------------------CCCCCceEEEEEEEecC
Confidence 0137888999999999999999999999964 24789999999999999
Q ss_pred CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCccccceecCCCCc-
Q 008294 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (571)
Q Consensus 402 ~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~- 476 (571)
++|.++++||++|+|++||.|++.+++..++|++|+.+.+ +..+++++.||||+.+. | ++++.+||||++...+
T Consensus 206 ~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~ 284 (600)
T PRK05433 206 YRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA 284 (600)
T ss_pred CCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc
Confidence 9999999999999999999999999999999999996665 78999999999998884 4 4568899999988776
Q ss_pred -ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHh
Q 008294 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (571)
Q Consensus 477 -~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~ 550 (571)
.+++++++|+|+++++++|.+.+|+++|.++|.+|+.|||||.++ +||++.+++| ||+|||||+++||+++|
T Consensus 285 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 285 EEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred ccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999997 6899999999 99999999999999999
Q ss_pred CceEEEecCeEEEEEEEec
Q 008294 551 KKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 551 ~vev~~~~p~i~yke~~~~ 569 (571)
|+++.+++|+|.|||+|++
T Consensus 363 ~~~v~~~~P~V~Yreti~~ 381 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTD 381 (600)
T ss_pred CceEEEecCEEEEEEEEeC
Confidence 9999999999999999985
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-63 Score=544.74 Aligned_cols=360 Identities=30% Similarity=0.475 Sum_probs=319.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--C---eEEEEEcCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--K---HRINIIDTP 163 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~---~~i~liDTP 163 (571)
++|||+|+||+|+|||||+++|++.+|.+... ..+.+++|+.++|+++|+|+......+.|. + +.++|||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTP 78 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 78 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECC
Confidence 58999999999999999999999988876543 235688999999999999999998888774 2 789999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.+|..++.++++.+|++|+|+|+++|++.++...|..+...++|+++|+||+|+..++..++.+++.+.++..
T Consensus 79 G~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----- 153 (595)
T TIGR01393 79 GHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----- 153 (595)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----
Confidence 999999999999999999999999999999999999988888899999999999987654444444444333210
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~ 403 (571)
..+++++||++|.|+++|++.|.+.+|+|.. ++++|+.++||+++.|+++
T Consensus 154 ----------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~~V~~~~~d~~~ 203 (595)
T TIGR01393 154 ----------ASEAILASAKTGIGIEEILEAIVKRVPPPKG--------------------DPDAPLKALIFDSHYDNYR 203 (595)
T ss_pred ----------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEEEEEeCCC
Confidence 0137889999999999999999999999964 2478999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCccccceecCCCCcc--
Q 008294 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHPI-- 477 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~~-- 477 (571)
|.++++||++|+|++||.|++.+.++.++|++|..+.+.. .+++++.||||+.+. | ++++.+|||||+.+.+.
T Consensus 204 G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~ 282 (595)
T TIGR01393 204 GVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKE 282 (595)
T ss_pred cEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcccc
Confidence 9999999999999999999999999899999999777665 999999999998884 4 45688999999987764
Q ss_pred cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHhCc
Q 008294 478 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFKK 552 (571)
Q Consensus 478 ~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~~v 552 (571)
+++++++++|+++.+++|.+.+|++||.++|.||++|||+|.++. ||++.+++| ||+|||||+++||+++||+
T Consensus 283 ~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~ 360 (595)
T TIGR01393 283 PLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNL 360 (595)
T ss_pred CCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCC
Confidence 788899999999999999999999999999999999999999984 799887774 9999999999999999999
Q ss_pred eEEEecCeEEEEEEEec
Q 008294 553 LMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 553 ev~~~~p~i~yke~~~~ 569 (571)
++.+++|+|.|||+|++
T Consensus 361 ~v~~~~P~V~Yreti~~ 377 (595)
T TIGR01393 361 DLITTAPSVIYRVYLTN 377 (595)
T ss_pred eeEEecCEEEEEEEecC
Confidence 99999999999999975
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=498.83 Aligned_cols=454 Identities=29% Similarity=0.471 Sum_probs=381.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC----cccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
.+.|+.|||.|+++|||||.+.|+...|++...|.+... .+.+||++.|++|||++.++...++++++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 457899999999999999999999999999888877533 3679999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.||+..+.+.|..+|.+|.||||..|+++||+.+++.|+.+++|++-++||+|+...++-+++++|.+.|++.+.|+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeee---ec--ccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY---ED--IPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~---~~--~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~ 318 (571)
+|||.+..|+|++|+....-..|.+...+..... .. .|+.....-+..++.+.|.+ +-+.+ .+.+.+.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~----EL~~~---a~~~Fd~ 242 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL----ELVQG---AGNEFDL 242 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH----HHHHh---hccccCH
Confidence 9999999999999999998888876533222221 11 11111111111222222211 00000 0112222
Q ss_pred HHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEe
Q 008294 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (571)
Q Consensus 319 ~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 398 (571)
..+..+...|||+|||++|.||+.||+.++++.|+|..+...... +++ .+..|.+||||+.
T Consensus 243 --------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~----------v~p-~e~kfsGFVFKIQ 303 (528)
T COG4108 243 --------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTRE----------VEP-TEDKFSGFVFKIQ 303 (528)
T ss_pred --------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCc----------ccC-CCCccceEEEEEE
Confidence 234557788999999999999999999999999999875542211 111 1334999999997
Q ss_pred ---ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCC
Q 008294 399 ---SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADH 475 (571)
Q Consensus 399 ---~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~ 475 (571)
...++.+++|.||+||.+..|+++...++|+..++..-..+++..++.|++|.||||++|.+-..+..|||++.. .
T Consensus 304 ANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G-e 382 (528)
T COG4108 304 ANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG-E 382 (528)
T ss_pred cCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-c
Confidence 244678999999999999999999999999999999999999999999999999999999776668899999976 6
Q ss_pred cccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEE
Q 008294 476 PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLML 555 (571)
Q Consensus 476 ~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~ 555 (571)
...+.+++...|-+...|..+++....+|..||++|++|-.. ++.....+++.++...|.||+||+.+||+++|++|+.
T Consensus 383 ~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGav-Q~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~ 461 (528)
T COG4108 383 KLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGAV-QVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAV 461 (528)
T ss_pred eeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCee-EEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEE
Confidence 788888888899999999999999999999999999999984 5656567899999999999999999999999999999
Q ss_pred EecCeEEEEEEEec
Q 008294 556 VHPKSTIVKAFLKS 569 (571)
Q Consensus 556 ~~~p~i~yke~~~~ 569 (571)
+.+..+...-||..
T Consensus 462 ~e~~~~~~aRWi~~ 475 (528)
T COG4108 462 FEPVNFSTARWIEC 475 (528)
T ss_pred EeeccceEEEEecC
Confidence 99999999888864
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=492.79 Aligned_cols=469 Identities=28% Similarity=0.379 Sum_probs=365.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-------------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------- 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~------------- 152 (571)
...++||+.+|.|+++|||||.+.|+...|.+.. ....+++++|..++|++||+|+.+..+++.+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~--akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISA--AKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeee--cccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 3467999999999999999999999987776542 2234568999999999999999999998865
Q ss_pred ---cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc----hh
Q 008294 153 ---NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN----FF 225 (571)
Q Consensus 153 ---~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~----~~ 225 (571)
+++.|||||.|||.||++++-.++|..|++++|||+.+|+..||+.+++++....+..++|+||+|+.--+ .+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999985422 33
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecc-cceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLV-KMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~ 304 (571)
++.+.+++....-.+.+. ...++.+ |.+.+. ....+.|.+...||.|++..|++.|..++......++..+|...-
T Consensus 173 eLyqtf~R~VE~vNviis--Ty~d~~~-g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~ 249 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIIS--TYGDGPM-GDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNF 249 (842)
T ss_pred HHHHHHHHHHhcccEEEE--ecccCCc-CceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccc
Confidence 444444433322111111 1111222 233333 344678999999999999999999999988777788877775210
Q ss_pred ---------------------------------HHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCC----
Q 008294 305 ---------------------------------EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKG---- 347 (571)
Q Consensus 305 ---------------------------------~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~G---- 347 (571)
.+.+..++ .-.+|+...+.+.-. .+.+--+.+.|
T Consensus 250 f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN---~kkeei~~llekl~v------~lk~~~kd~eGK~Ll 320 (842)
T KOG0469|consen 250 FNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMN---FKKEEIATLLEKLEV------TLKGDEKDLEGKALL 320 (842)
T ss_pred cCccCCcccccccccccCccccceeEEeechHHHHHHHHhh---ccHHHHHHHHHHhcc------eeccccccccchHHH
Confidence 01111111 112333333322211 11112222222
Q ss_pred ----------hHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCC-ceEEEEEE
Q 008294 348 ----------VQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFV-GSLTFVRV 411 (571)
Q Consensus 348 ----------v~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~-G~i~~~rV 411 (571)
-+.||++|.-++|+|..++.++.. ..+++.......||+++|+.+||.|+...... .+++||||
T Consensus 321 K~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRV 400 (842)
T KOG0469|consen 321 KVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_pred HHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeee
Confidence 368999999999999999988733 23455567778999999999999999855444 46899999
Q ss_pred ecceeCCCCEEEeC----CCCcee-----ecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceecCCCCcccccC
Q 008294 412 YAGTLSAGSYVLNA----NKGKKE-----RIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPILLER 481 (571)
Q Consensus 412 ~sG~l~~gd~v~~~----~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~~~~~~l~~ 481 (571)
|||++..|++++.. ..|+++ .|.+...|+|+..++++.++||+|+++.|+++ +.++.||...+....++.
T Consensus 401 FsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrv 480 (842)
T KOG0469|consen 401 FSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRV 480 (842)
T ss_pred ecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceE
Confidence 99999999999953 334443 26666789999999999999999999999998 445558877777777888
Q ss_pred CCCC-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecC
Q 008294 482 MDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPK 559 (571)
Q Consensus 482 ~~~~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p 559 (571)
++|. .|+++++||++++.|++||.++|++|++.||...+.+ +|+||++|.|.||||||+|+.+|++.| +|.++.++|
T Consensus 481 MKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdP 559 (842)
T KOG0469|consen 481 MKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDP 559 (842)
T ss_pred EEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecCCC
Confidence 8876 8999999999999999999999999999999999998 579999999999999999999999999 899999999
Q ss_pred eEEEEEEEec
Q 008294 560 STIVKAFLKS 569 (571)
Q Consensus 560 ~i~yke~~~~ 569 (571)
-|+|||+|.+
T Consensus 560 vVsYrEtvs~ 569 (842)
T KOG0469|consen 560 VVSYRETVSE 569 (842)
T ss_pred eeeeeccccc
Confidence 9999999864
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-59 Score=467.83 Aligned_cols=368 Identities=32% Similarity=0.509 Sum_probs=329.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
..+||||||.|++||||||++.||.++|.......+. .++||+...|++||+|+-.....+.|++.+||++|||||.|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--ERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchh--hhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 4589999999999999999999999999887755543 48899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHh---CCcceeeec
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNL---GAKPLVVQL 244 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l---~~~~~~~~~ 244 (571)
|.+++++.+...|+++++|||.+|..+||+.++..+.+.+++.|+|+||+|++.++++++++++.+.| ++..
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d----- 155 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD----- 155 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh-----
Confidence 99999999999999999999999999999999999999999999999999999999999888877654 2110
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
+
T Consensus 156 ------------------------------------------------------------e------------------- 156 (603)
T COG1217 156 ------------------------------------------------------------E------------------- 156 (603)
T ss_pred ------------------------------------------------------------h-------------------
Confidence 0
Q ss_pred HHhhcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
.--+|++..||..|. .+..|++.|.+|+|.|.. +.++||.++|
T Consensus 157 -------QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--------------------~~d~PlQ~qv 209 (603)
T COG1217 157 -------QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--------------------DLDEPLQMQV 209 (603)
T ss_pred -------hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC--------------------CCCCCeEEEE
Confidence 011477777777663 377899999999999974 4689999999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceec
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLC 471 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~ 471 (571)
+.+.+++|+|++..|||++|++++|+.|.....+ ...||.+++-..|-++.++++|.|||||+|+|+.++..|||+|
T Consensus 210 t~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 210 TQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred EeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCccccccccccc
Confidence 9999999999999999999999999999865433 3468999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCCceEEEEEEeCCCC---------CHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHH
Q 008294 472 DADHPILLERMDFPDPVIKVAIEPKTKA---------DIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEII 542 (571)
Q Consensus 472 ~~~~~~~l~~~~~~~Pv~~~avep~~~~---------d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~ 542 (571)
+++.+..++.+.+-+|.+++.+..++.. --.++.+.|.+-.+.+.+|+++-.++-..+.++|.|||||-|+
T Consensus 290 d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsIL 369 (603)
T COG1217 290 DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSIL 369 (603)
T ss_pred CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHH
Confidence 9999999999999999999999887654 2568899999999999999998766668899999999999999
Q ss_pred HHHHHhHhCceEEEecCeEEEEEEEecC
Q 008294 543 VDRLKREFKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 543 ~~rL~~~~~vev~~~~p~i~yke~~~~~ 570 (571)
++.+||+ |.|+.++.|+|+||| |.+.
T Consensus 370 iE~MRRE-GfEl~VsrP~Vi~ke-idG~ 395 (603)
T COG1217 370 IENMRRE-GFELQVSRPEVIIKE-IDGV 395 (603)
T ss_pred HHHhhhc-ceEEEecCceEEEEe-cCCc
Confidence 9999999 999999999999999 5543
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=473.21 Aligned_cols=369 Identities=28% Similarity=0.435 Sum_probs=323.8
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC---eEEEE
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINI 159 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~l 159 (571)
...|.+++||++||.|++||||||.++|+..+|.+.... ....++|....|++||||+.....++.|.+ +.+|+
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~---~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNL 129 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI---GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNL 129 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC---chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEe
Confidence 345668999999999999999999999999999665432 235889999999999999999999999988 99999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcc
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~ 239 (571)
||||||.||..|+.+.+..+|++|+||||.+|++.||...+..+.++++.+|.|+||+|++.++.+++..++.+.|+..+
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876521
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
-+++.+||++|.|+.++|++|++.+|+|... .++||.+++|.++.
T Consensus 210 ---------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~--------------------~d~plr~Lifds~y 254 (650)
T KOG0462|consen 210 ---------------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI--------------------RDAPLRMLIFDSEY 254 (650)
T ss_pred ---------------cceEEEEeccCccHHHHHHHHHhhCCCCCCC--------------------CCcchHHHhhhhhh
Confidence 0478899999999999999999999999762 48999999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEecc--CceeecCeecCCCEEEEeC-CCCccccceecCCC--
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHA--NSREDVKVALAGDIIALAG-LKDTITGETLCDAD-- 474 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g--~~~~~v~~a~aGdiv~i~g-l~~~~~Gdtl~~~~-- 474 (571)
|.|.|.++++||..|.+++||+|....+++...++.+-.|.- -...+++...+|+|++-.+ +++...|||++...
T Consensus 255 D~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~ 334 (650)
T KOG0462|consen 255 DEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVT 334 (650)
T ss_pred hhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccC
Confidence 999999999999999999999999888887766666555553 3333444455566666555 78899999999876
Q ss_pred Cc-ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCC---e-EEEEEecHHHHHHHHHHHHhH
Q 008294 475 HP-ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEIN---Q-TVIEGMGELHLEIIVDRLKRE 549 (571)
Q Consensus 475 ~~-~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etg---e-~il~g~GelhLev~~~rL~~~ 549 (571)
.+ ..++.++...|++++...|.+..|.+.|..++.||+.+|+++.+..+ .++ + +.++++|.|||+|+.+||++|
T Consensus 335 ~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~E 413 (650)
T KOG0462|consen 335 KAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLERE 413 (650)
T ss_pred cccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHh
Confidence 33 34666667799999999999999999999999999999999999874 344 3 579999999999999999999
Q ss_pred hCceEEEecCeEEEEEEEecC
Q 008294 550 FKKLMLVHPKSTIVKAFLKSL 570 (571)
Q Consensus 550 ~~vev~~~~p~i~yke~~~~~ 570 (571)
||.++.+++|+|.||-...+.
T Consensus 414 yg~elivt~PtV~Yr~~~~~~ 434 (650)
T KOG0462|consen 414 YGAELIVTPPTVPYRVVYSNG 434 (650)
T ss_pred cCceeeecCCcceEEEEecCC
Confidence 999999999999999887764
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=457.70 Aligned_cols=364 Identities=31% Similarity=0.457 Sum_probs=326.6
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINI 159 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~l 159 (571)
.+.+++||++||.|.+||||||.++|+..+|..... +-...++|.+..|++||+|+....+.+.|. .+.++|
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnl 80 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNL 80 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEE
Confidence 456789999999999999999999999998876543 223478999999999999999999998873 489999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcc
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKP 239 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~ 239 (571)
||||||.||.-++.+++..+.++++||||+.|++.||......+...+..++-|+||+|++.++.+++.++|.+.+|.+.
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888732
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
.
T Consensus 161 ~------------------------------------------------------------------------------- 161 (603)
T COG0481 161 S------------------------------------------------------------------------------- 161 (603)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
-.+.+||++|.||+++|+.|++.+|+|.. +++.|+.|++|+.+.
T Consensus 162 ----------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--------------------~~~~pLkALifDS~y 205 (603)
T COG0481 162 ----------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--------------------DPDAPLKALIFDSWY 205 (603)
T ss_pred ----------------hheeEecccCCCHHHHHHHHHhhCCCCCC--------------------CCCCcceEEEEeccc
Confidence 14567999999999999999999999975 368999999999999
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE-eCCCC---ccccceecCCCC
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGLKD---TITGETLCDADH 475 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i-~gl~~---~~~Gdtl~~~~~ 475 (571)
|+|.|.++++||+.|++++||+|....+|+...|..+-.+.- ...+++++.||+++-+ +|+++ ++.|||+....+
T Consensus 206 D~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~ 284 (603)
T COG0481 206 DNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASN 284 (603)
T ss_pred cccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCC
Confidence 999999999999999999999999999999988888877765 6688999999999877 56654 788999985555
Q ss_pred c--ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCe-----EEEEEecHHHHHHHHHHHHh
Q 008294 476 P--ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQ-----TVIEGMGELHLEIIVDRLKR 548 (571)
Q Consensus 476 ~--~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge-----~il~g~GelhLev~~~rL~~ 548 (571)
| .+++.++..+|+++..+.|.+..|.+.|.+||.||..+|.+|.++. ||.+ +..+.+|-|||||+.+||+|
T Consensus 285 p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~--EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 285 PATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP--ETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeecc--ccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 4 4678888889999999999999999999999999999999999985 5654 34556899999999999999
Q ss_pred HhCceEEEecCeEEEEEEEec
Q 008294 549 EFKKLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 549 ~~~vev~~~~p~i~yke~~~~ 569 (571)
+|++++.++.|+|+|+-..++
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~ 383 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTD 383 (603)
T ss_pred hhCcceEecCCceEEEEEEcC
Confidence 999999999999999998876
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=412.87 Aligned_cols=270 Identities=72% Similarity=1.153 Sum_probs=261.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++||+|+|||||+++|++.+|.+.+.|.+..|++++|+.++|++||+|++.....+.|++++++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 69999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (571)
+..+++.+|++|+|||+..|+..+++.+|+.+...++|+++|+||+|+.++++.++++++++.++..+.+.++|++...+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 252 ~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
|+|+||++.+++|.|... .|..+...++|+++.+..+++|+.|+|.+++.||+|||+||+|++++.+++..++++++..
T Consensus 161 f~g~vd~~~~~a~~~~~~-~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 161 FRGVVDLIEMKALYWDGE-LGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred ceEEEEccccEEEecccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999443 3667888999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+.++|||||||.++.|++.|||.|.+++|+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=424.57 Aligned_cols=458 Identities=24% Similarity=0.331 Sum_probs=347.9
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----cCeEEEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINI 159 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~l 159 (571)
..+.++||++++||.++|||+|++.|..+++..-.. ..+....+.|....|++||+++.....++.. +.+.+|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~-~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK-NTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccc-cccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 355789999999999999999999998776632211 1122347889999999999999999888764 4678999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccch-----------hhhH
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF-----------FRTR 228 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~-----------~~~~ 228 (571)
+|||||.+|..++..+++.+|++++|||+.+|+.-+++.+++.+.+.++|+.+|+||+|+...++ ..++
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii 281 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHII 281 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875331 2234
Q ss_pred HHHHHHh---CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHH---------HH----
Q 008294 229 DMIVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQE---------YR---- 292 (571)
Q Consensus 229 ~~i~~~l---~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------~~---- 292 (571)
++++..+ +....++.-| ...+++|.+..+||.|++.+|+..|.+.... +|
T Consensus 282 ~~iN~~is~~s~~~~~~~sP--------------~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvY 347 (971)
T KOG0468|consen 282 DEINNLISTFSKDDNPVVSP--------------ILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVY 347 (971)
T ss_pred HHhcchhhhccccccccccc--------------ccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcccc
Confidence 4444322 1211222222 2456889999999999999988776654211 11
Q ss_pred ------------------HHHHHHHhhcCHHHHHHHhc-------------CCCCCHHHHHHHHHhhcccCcceeee---
Q 008294 293 ------------------SQMIETIVELDDEAMESYLE-------------GNEPDEETIKKLIRKGTIAGSFVPVL--- 338 (571)
Q Consensus 293 ------------------~~l~e~~~~~~~~l~e~~l~-------------~~~~~~~~l~~~l~~~~~~~~~~Pv~--- 338 (571)
..++|.+.+.-..+.++-+. |..+++++++ .+.-|.+
T Consensus 348 f~~ktrkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k---------~n~rPll~lv 418 (971)
T KOG0468|consen 348 FHSKTRKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYK---------LNPRPLLRLV 418 (971)
T ss_pred ccccccccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhh---------cCccHHHHHH
Confidence 01222222222222222221 1223333332 1122221
Q ss_pred eccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEee-cCCCceEEEEEEe
Q 008294 339 CGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMS-DPFVGSLTFVRVY 412 (571)
Q Consensus 339 ~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~-d~~~G~i~~~rV~ 412 (571)
|-|-+.- -..+.|++++++|+|.+....+.. ..++.....+.+|++++|+++.+.|++. +..+-..+|+||+
T Consensus 419 c~~ffg~--~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~ 496 (971)
T KOG0468|consen 419 CKSFFGI--ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVY 496 (971)
T ss_pred HHHhccc--hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeee
Confidence 1111111 135899999999999985544422 1223445677889999999999999995 4445678999999
Q ss_pred cceeCCCCEEEeCCCC---------ceeecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceecCC---CCcccc
Q 008294 413 AGTLSAGSYVLNANKG---------KKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDA---DHPILL 479 (571)
Q Consensus 413 sG~l~~gd~v~~~~~~---------~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~---~~~~~l 479 (571)
||+++.|+.|.+...+ ....|++++...++++.+|++|+||.++.|.|+++ +.+..|++.. ++...+
T Consensus 497 Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiF 576 (971)
T KOG0468|consen 497 SGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIF 576 (971)
T ss_pred ecceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeec
Confidence 9999999999865433 23568899999999999999999999999999987 5567788764 445677
Q ss_pred cCCCC-CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEe
Q 008294 480 ERMDF-PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVH 557 (571)
Q Consensus 480 ~~~~~-~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~ 557 (571)
+|+.+ +.|+++++++|.++++++||.+||+|.++.+|.+..++ +|+||++|.|.|||+|||++++||..| .+|++++
T Consensus 577 rpl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikva 655 (971)
T KOG0468|consen 577 RPLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVA 655 (971)
T ss_pred cchhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeec
Confidence 88875 69999999999999999999999999999999998888 789999999999999999999999999 4999999
Q ss_pred cCeEEEEEEEec
Q 008294 558 PKSTIVKAFLKS 569 (571)
Q Consensus 558 ~p~i~yke~~~~ 569 (571)
.|-+.|.|++-+
T Consensus 656 DPvv~F~Et~ve 667 (971)
T KOG0468|consen 656 DPVVRFCETVVE 667 (971)
T ss_pred CceeEEEEeeec
Confidence 999999999854
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=419.27 Aligned_cols=467 Identities=27% Similarity=0.366 Sum_probs=343.2
Q ss_pred cCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEc
Q 008294 84 VIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIID 161 (571)
Q Consensus 84 ~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liD 161 (571)
+.+...+|||+++.|++||||||++.|+...|.+.. .|++ +++|+.++|+.||+|+..+.+++..+++.+||||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagki----rfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI----RFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccce----eeccccchhhhhceeeeccccccccCceEEEEec
Confidence 346678999999999999999999999988886554 2333 8899999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc-----------hhhhHHH
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-----------FFRTRDM 230 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-----------~~~~~~~ 230 (571)
+|||.||.+++..+.+.+|+++++||+.+|+..||..+++++-..+...++|+||||+...+ .-+++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976433 2344555
Q ss_pred HHHHhCCcceeeeccCCCCCCcc--eeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh-------
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFK--GVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE------- 301 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~--~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~------- 301 (571)
++..+|.-..-+-.--....... ++..--...++.|.+...||.|....+..-+..+.....+.+.-.+|.
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~k 238 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPK 238 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecch
Confidence 55444421100000000000000 011111234566777778999888877765555433333333322221
Q ss_pred -----------------------------------cCHHHHHHHhc--CCCCCHHHHHHHHHhhcccCcceeeeeccccC
Q 008294 302 -----------------------------------LDDEAMESYLE--GNEPDEETIKKLIRKGTIAGSFVPVLCGSAFK 344 (571)
Q Consensus 302 -----------------------------------~~~~l~e~~l~--~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~ 344 (571)
.|-+.+++... +..+-..++...+.. ....|+|+ |
T Consensus 239 tk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~--im~~wLPl---s--- 310 (887)
T KOG0467|consen 239 TKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDA--IMSTWLPL---S--- 310 (887)
T ss_pred hhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHH--HHHhhccc---c---
Confidence 11222222211 112222222221111 12456665 1
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCCCCCC--------CCCccccccccCCCCCCeEEEEEEEeec-----CCCceEEEEEE
Q 008294 345 NKGVQPLLDAVVDYLPSPLDLPAMKGTD--------PENPEATLERAASDDEPFAGLAFKIMSD-----PFVGSLTFVRV 411 (571)
Q Consensus 345 ~~Gv~~Lld~i~~~lP~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~V~k~~~d-----~~~G~i~~~rV 411 (571)
+..+-+.+.++|+|.+.+..++.. .+.+.......|++++|..++|.|+... |....++++||
T Consensus 311 ----~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari 386 (887)
T KOG0467|consen 311 ----DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARI 386 (887)
T ss_pred ----cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeee
Confidence 345556668889988765544321 1112334556789999999999999843 33225799999
Q ss_pred ecceeCCCCEEEeCCC-------CceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCC
Q 008294 412 YAGTLSAGSYVLNANK-------GKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDF 484 (571)
Q Consensus 412 ~sG~l~~gd~v~~~~~-------~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~ 484 (571)
||||++.||.|+..+. -...+|.++|.++|++..+.+++++|++++|.|-+-+....|||+.....++....|
T Consensus 387 ~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f 466 (887)
T KOG0467|consen 387 FSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNF 466 (887)
T ss_pred ccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeee
Confidence 9999999999996543 234679999999999999999999999999999333667889998754444444333
Q ss_pred -CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecCeEE
Q 008294 485 -PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPKSTI 562 (571)
Q Consensus 485 -~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p~i~ 562 (571)
-+|.++++|+|.++.|+++|.++|+.|.+.||++++.. +++|||++...||+|||.|+.+|++ | ++++++++|.+.
T Consensus 467 ~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vp 544 (887)
T KOG0467|consen 467 QITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVP 544 (887)
T ss_pred eeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccc
Confidence 49999999999999999999999999999999999988 4799999999999999999999999 7 799999999999
Q ss_pred EEEEEe
Q 008294 563 VKAFLK 568 (571)
Q Consensus 563 yke~~~ 568 (571)
||||+.
T Consensus 545 frET~~ 550 (887)
T KOG0467|consen 545 FRETII 550 (887)
T ss_pred hhhhcc
Confidence 999983
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=382.42 Aligned_cols=263 Identities=36% Similarity=0.547 Sum_probs=243.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee----cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~----~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
++|||+++||+|+|||||+++|++.+|.+.+.|.+. .|++++|+.+.|++||+++......+.|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999999999988887 5888999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++..+++.+|++|+|+|+..++..++..+|+.+...++|+++|+||+|+..+++.++++++++.++...+|+++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999988999999999999999998888999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
|++.+.+|+|++|++.+++|.|.....+......++|+++. |.+++.||++||+|+++++++.+++...
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 99999999999999999999994322222345555666543 7889999999999999999999999999
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+++++..+.++|||||||.+|.|++.|||+|.+++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=370.10 Aligned_cols=268 Identities=44% Similarity=0.715 Sum_probs=256.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++||+|+|||||+++|++..|.+.+.|++..|++.+|+.+.|.++++|+......+.|+++.+++|||||+.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999999999988888999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (571)
+..+++.+|++++|+|+..+...++..+|+.+...++|.++|+||+|+..+++.+.++++++.++..+++.++|++.+.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~ 160 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDD 160 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 252 ~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
|.+++|++.++++.|.. |..+...++|+++.+..+++|+.|+|.+++.||++||+||+|++++.+++...+++++..
T Consensus 161 ~~~~vd~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 161 FKGVVDLLTEKAYIYSP---GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred eeEEEEcccCEEEEccC---CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999964 333566789999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+.++||||+||+++.|++.|+|+|.+++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=355.63 Aligned_cols=237 Identities=41% Similarity=0.653 Sum_probs=222.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++||+|+|||||+++|++.+|.+.+.|++..|++++|+.+.|+++|+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDN 251 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~ 251 (571)
+..+++.+|++++|+|+.+|+..+++.+|+.+...++|+++|+||+|+..+++.+++++|++.|+.+++|+++|+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~----- 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG----- 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 252 FKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 252 ~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
+++.+ . .. ..++++|+|.++|.||++||+||+|++++.+||..++++++..
T Consensus 156 ---~~~~~-------~--------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 156 ---LAPNI-------C--------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred ---Eeeee-------e--------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11110 0 01 1235789999999999999999999999999999999999999
Q ss_pred CcceeeeeccccCCCChHHHHHHHHHhCCCC
Q 008294 332 GSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362 (571)
Q Consensus 332 ~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p 362 (571)
+.++|||||||.++.|++.|||.|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=328.50 Aligned_cols=274 Identities=26% Similarity=0.348 Sum_probs=218.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+..+||+++||+|+|||||+++|++..+.+.. ....+...+|+.++|+++|+|++.....+.+++.+++|||||||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 3466899999999999999999999987775432 22234467899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccc--hhhhHHHHHHHhCCcceee
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~ 242 (571)
.+|..++..++..+|++++|||+.+|+..|+++++..+...++| +++++||+|+...+ ++.+.+++++.+
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l------- 227 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL------- 227 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH-------
Confidence 99999999999999999999999999999999999999999999 56789999986521 111122222222
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
T Consensus 228 -------------------------------------------------------------------------------- 227 (478)
T PLN03126 228 -------------------------------------------------------------------------------- 227 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccC
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAA 384 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~------------------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~ 384 (571)
+........+|++.+||++|. ++..|++.|.++.|.|..
T Consensus 228 ---~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r-------------------- 284 (478)
T PLN03126 228 ---SSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR-------------------- 284 (478)
T ss_pred ---HhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC--------------------
Confidence 111111123456666666552 256799999988776643
Q ss_pred CCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEE--eC
Q 008294 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AG 460 (571)
Q Consensus 385 ~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g 460 (571)
+.+.||.++|..+|.++++|.+..|+|.+|++++||.|+..+.+ ...+|++|.... .++++|.|||.++| .+
T Consensus 285 ~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~A~aG~~v~l~L~~ 360 (478)
T PLN03126 285 QTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQ----KILDEALAGDNVGLLLRG 360 (478)
T ss_pred ccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECC----eECCEEeCCceeeeeccC
Confidence 13689999999999999999999999999999999999987654 456788887553 78999999999998 56
Q ss_pred CCC--ccccceecCCCC
Q 008294 461 LKD--TITGETLCDADH 475 (571)
Q Consensus 461 l~~--~~~Gdtl~~~~~ 475 (571)
++. +..|++||+++.
T Consensus 361 i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 361 IQKADIQRGMVLAKPGS 377 (478)
T ss_pred CcHHHcCCccEEecCCC
Confidence 643 889999998753
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=326.21 Aligned_cols=275 Identities=27% Similarity=0.398 Sum_probs=220.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+..+||+++||+|+|||||+++|++..|.+.. ........+|+.++|+++|+|++.....+.+++.+++|+|||||.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 456799999999999999999999977665431 111223578999999999999999999998999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
+|...+.+++..+|++++|||+.+|+..|+++++..+...++| +++|+||+|+...+ +..+.+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~------------- 151 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE------------- 151 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999 56789999986532 1111111
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
+++...+
T Consensus 152 -------------------------------------------------------------------------~~l~~~l 158 (409)
T CHL00071 152 -------------------------------------------------------------------------LEVRELL 158 (409)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1222222
Q ss_pred HhhcccCcceeeeeccccCCC------------------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCC
Q 008294 326 RKGTIAGSFVPVLCGSAFKNK------------------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDD 387 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~------------------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (571)
+........+|++++||++|. |+..|+++|.+++|.|.. +.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~ 218 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPER--------------------DTD 218 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCC--------------------CCC
Confidence 222222234688888888875 467899999999887753 136
Q ss_pred CCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 388 ~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
.||+++|++++.++++|.+++|||++|+++.||.|...+ .+...+|++|.... +++++|.|||+|++ .+++
T Consensus 219 ~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~ 294 (409)
T CHL00071 219 KPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQK 294 (409)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCH
Confidence 899999999999999999999999999999999998643 34567888887543 67999999999977 4665
Q ss_pred -CccccceecCCCC
Q 008294 463 -DTITGETLCDADH 475 (571)
Q Consensus 463 -~~~~Gdtl~~~~~ 475 (571)
++..||+||+++.
T Consensus 295 ~~i~~G~vl~~~~~ 308 (409)
T CHL00071 295 EDIERGMVLAKPGT 308 (409)
T ss_pred HHcCCeEEEecCCC
Confidence 4889999998753
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=323.85 Aligned_cols=274 Identities=27% Similarity=0.402 Sum_probs=218.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee-ecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.+..+||+++||+|+|||||+++|+...+. .|.. ..+...+|..++|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 455799999999999999999999843321 1211 112236899999999999999998888888899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..++..+|++++|||+.+|+..++++++..+...++|. ++|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~------------ 151 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH------------
Confidence 999999999999999999999999999999999999999999995 6789999986321 1111111
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
+++...
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T PRK12736 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111112
Q ss_pred HHhhcccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 396 (571)
+.........+|++++||++|. ++..|++.|.+++|.|.. +.++||+++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~r~~I~~ 217 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--------------------DTDKPFLMPVED 217 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC--------------------CCCCCeEEEEEE
Confidence 2211112234689999999983 689999999999997743 136899999999
Q ss_pred EeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccccccee
Q 008294 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (571)
Q Consensus 397 ~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl 470 (571)
++.++++|.++.|||.+|+|+.||.|+..+. +...+|++|... ..++++|.|||++++ .|++ ++..|++|
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 9999999999999999999999999998665 556788888753 378999999999977 7774 48899999
Q ss_pred cCCCC
Q 008294 471 CDADH 475 (571)
Q Consensus 471 ~~~~~ 475 (571)
|+++.
T Consensus 294 ~~~~~ 298 (394)
T PRK12736 294 AKPGS 298 (394)
T ss_pred ecCCC
Confidence 98753
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=340.21 Aligned_cols=305 Identities=26% Similarity=0.330 Sum_probs=245.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+.++|+|+||+|||||||+++|... .+.. ...+|+|.......+.|+++.++|||||||.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~--------~v~~----------~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT--------NVAA----------GEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC--------Cccc----------cccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 357799999999999999999999621 1111 1136789888888899999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+|...+.++++.+|++|+|||+.+|+..++.++|..+...++|+++|+||+|+..++..++..++.+ .+.
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~--------- 418 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL--------- 418 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc---------
Confidence 9999999999999999999999999999999999999999999999999999977655444444432 000
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
+.+.
T Consensus 419 -----------------------------------------------------------~~e~----------------- 422 (787)
T PRK05306 419 -----------------------------------------------------------VPEE----------------- 422 (787)
T ss_pred -----------------------------------------------------------cHHH-----------------
Confidence 0000
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
.+..+|++++||++|.|+++|+++|...... ....++++.|+.++|++++.|+++|.+
T Consensus 423 ----~g~~vp~vpvSAktG~GI~eLle~I~~~~e~------------------~~l~~~~~~~~~g~V~es~~dkg~G~v 480 (787)
T PRK05306 423 ----WGGDTIFVPVSAKTGEGIDELLEAILLQAEV------------------LELKANPDRPARGTVIEAKLDKGRGPV 480 (787)
T ss_pred ----hCCCceEEEEeCCCCCCchHHHHhhhhhhhh------------------hhcccCCCCCcEEEEEEEEEcCCCeEE
Confidence 0223689999999999999999999753210 012245688999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCc---------
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~--------- 476 (571)
++++|++|+|+.||.|++.+ +.++++.|.+....++++|.|||+|.|.||+++ .+||+|+...+.
T Consensus 481 ~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~ 555 (787)
T PRK05306 481 ATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEY 555 (787)
T ss_pred EEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999853 467888888877789999999999999999998 899999843221
Q ss_pred ---------------ccccCCCCC-----CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEE
Q 008294 477 ---------------ILLERMDFP-----DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSR 522 (571)
Q Consensus 477 ---------------~~l~~~~~~-----~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~ 522 (571)
..+..+..+ ...+.+.|++..+++.+.|..+|.+|..+++.+.+-.
T Consensus 556 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 556 RQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred HHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 122222111 1268999999999999999999999999999988754
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=322.44 Aligned_cols=271 Identities=26% Similarity=0.317 Sum_probs=219.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee--ee-----------ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EV-----------HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~~-----------~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...||+++||+|+|||||+.+|++.+|.+.+.+ .+ ...++++|..++|+++|+|++.....+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999999999998765532 11 1124679999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCe-EEEEecCCccc-----
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLG----- 221 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-ivviNK~D~~~----- 221 (571)
+.++|||||||.+|..++..+++.+|++|+|||+.+|. ..|++++|..+...++|. ++++||||+..
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999873 379999999999999975 67899999862
Q ss_pred cchhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
.++.+++++++..++
T Consensus 165 ~~~~~i~~ei~~~l~----------------------------------------------------------------- 179 (447)
T PLN00043 165 ARYDEIVKEVSSYLK----------------------------------------------------------------- 179 (447)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 223333333333221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~ 369 (571)
+......-+|++.+||++|.|+. .|++.|.+ ++.|..
T Consensus 180 -------------------------~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~----- 228 (447)
T PLN00043 180 -------------------------KVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKR----- 228 (447)
T ss_pred -------------------------HcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCcc-----
Confidence 10000112477888999999874 48888865 444432
Q ss_pred CCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCe
Q 008294 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (571)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 449 (571)
..+.||++.|..++..+++|++..|||.+|++++||.|...+.+...+|++|... ..++++
T Consensus 229 ---------------~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~ 289 (447)
T PLN00043 229 ---------------PSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQE 289 (447)
T ss_pred ---------------ccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCE
Confidence 1368999999999999999999999999999999999999998888889998754 388999
Q ss_pred ecCCCEEEE--eCC--CCccccceecCC
Q 008294 450 ALAGDIIAL--AGL--KDTITGETLCDA 473 (571)
Q Consensus 450 a~aGdiv~i--~gl--~~~~~Gdtl~~~ 473 (571)
|.|||.+++ .++ +++.+|++||+.
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 999999988 455 347899999986
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=320.76 Aligned_cols=272 Identities=27% Similarity=0.319 Sum_probs=221.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee---------eeecCc----ccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---------EVHEGT----ATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g---------~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...||+++||+|+|||||+++|++.+|.+...+ ....|+ +.+|..++|+++|+|++.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999999988766533 112222 469999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCe-EEEEecCCcccc----
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGA---- 222 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~---- 222 (571)
+.++|||||||.+|..++..++..+|++++|||+.+|+ ..||+++|..+...++|. |+++||||+...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 589999999999999996 579999996432
Q ss_pred -chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 223 -NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 223 -~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
+++++.+++++.|+.
T Consensus 165 ~~~~~i~~~i~~~l~~---------------------------------------------------------------- 180 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKK---------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 233444444433221
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCC
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMK 369 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~ 369 (571)
.......+|++.+||++|.|+. .|++.|.+. +.|..
T Consensus 181 --------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~----- 228 (446)
T PTZ00141 181 --------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR----- 228 (446)
T ss_pred --------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc-----
Confidence 0001112688899999999985 488888654 43422
Q ss_pred CCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCe
Q 008294 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (571)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 449 (571)
+.+.|+.+.|..++..+++|++..|||.+|+|+.||.|...+.+...+|++|.... .++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~----~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHH----EQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecC----cccCE
Confidence 13689999999999999999999999999999999999999988888899887543 78999
Q ss_pred ecCCCEEEE--eCCC--CccccceecCCC
Q 008294 450 ALAGDIIAL--AGLK--DTITGETLCDAD 474 (571)
Q Consensus 450 a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 474 (571)
|.|||.+++ .+++ ++.+|++||+..
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999999998 3443 378999999864
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=316.67 Aligned_cols=273 Identities=28% Similarity=0.409 Sum_probs=216.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.++.+||+++||+|+|||||+++|++... ..|... .+...+|..++|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 45689999999999999999999974322 122211 12346899999999999999999888888899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..++..+|++++|||+.+|+..++++++..+...++|.+ +|+||+|+...+ +..+.+.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~------------ 151 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE------------ 151 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHH------------
Confidence 9999999999999999999999999999999999999999999987 579999986421 1111111
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
+++...
T Consensus 152 --------------------------------------------------------------------------~~i~~~ 157 (394)
T TIGR00485 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhhcccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~--------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 396 (571)
++........+|++++||++|. ++.+|++.|.+++|.|.. +.++||.++|++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~--------------------~~~~p~r~~V~~ 217 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER--------------------ETDKPFLMPIED 217 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEEEE
Confidence 1111111233689999999874 467899999988887753 136899999999
Q ss_pred EeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccccccee
Q 008294 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL 470 (571)
Q Consensus 397 ~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl 470 (571)
++.++++|.++.|||.+|+|++||.|+..+ .+...+|++|... ..++++|.|||++++ .|++ ++..|++|
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl 293 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVL 293 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEE
Confidence 999999999999999999999999999765 3566788888754 378999999999977 6664 48899999
Q ss_pred cCCC
Q 008294 471 CDAD 474 (571)
Q Consensus 471 ~~~~ 474 (571)
|+++
T Consensus 294 ~~~~ 297 (394)
T TIGR00485 294 AKPG 297 (394)
T ss_pred ecCC
Confidence 9874
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=311.86 Aligned_cols=274 Identities=27% Similarity=0.388 Sum_probs=216.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.+...||+++||+|+|||||+++|++..+. .|... ...+.+|..++|+++|+|++.....+.+++.+++|||||||
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 345789999999999999999999864321 11111 12246899999999999999998888888999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..++..+|++++|+|+.+|+..++++++..+...++|.+ +|+||+|+...+ +..+.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~~----------- 152 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM----------- 152 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999977 579999986421 11111110
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
++...
T Consensus 153 ---------------------------------------------------------------------------ei~~~ 157 (396)
T PRK12735 153 ---------------------------------------------------------------------------EVREL 157 (396)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHhhcccCcceeeeeccccCC----------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~----------~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
+......+..+|++++||++| .|+..|+++|.+.+|.|.. +.++||+++|
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~--------------------~~~~p~r~~I 217 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER--------------------AIDKPFLMPI 217 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc--------------------cCCCCeEEEE
Confidence 111111112367888899988 4788999999999987743 1368999999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccc
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 468 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gd 468 (571)
..+|..+++|.++.|||.+|++++||.|+..+. ++..+|++|... .+++++|.|||.+++ .|++ ++..|+
T Consensus 218 ~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~ 293 (396)
T PRK12735 218 EDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQ 293 (396)
T ss_pred EEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcce
Confidence 999999999999999999999999999997764 456678888753 378999999999998 6664 488999
Q ss_pred eecCCCC
Q 008294 469 TLCDADH 475 (571)
Q Consensus 469 tl~~~~~ 475 (571)
+||+++.
T Consensus 294 vl~~~~~ 300 (396)
T PRK12735 294 VLAKPGS 300 (396)
T ss_pred EEEcCCC
Confidence 9998753
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=311.53 Aligned_cols=275 Identities=27% Similarity=0.406 Sum_probs=214.1
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc-ccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
...+...||+++||+|+|||||+++|... ....|...... ..+|..++|+++|+|++.....+++++.+++|+|||
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~---~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtP 132 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCP 132 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhH---HHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECC
Confidence 34567899999999999999999999622 11222221112 258999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
||.+|...+..++..+|++++|||+.+|+..|+++++..+...++|. ++++||+|+...+ +..+.+.+
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~--------- 201 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM--------- 201 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999996 6789999986421 11111110
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
++.
T Consensus 202 -----------------------------------------------------------------------------~i~ 204 (447)
T PLN03127 202 -----------------------------------------------------------------------------ELR 204 (447)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 011
Q ss_pred HHHHhhcccCcceeeeecccc---CCCC-------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEE
Q 008294 323 KLIRKGTIAGSFVPVLCGSAF---KNKG-------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAG 392 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~---~~~G-------v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 392 (571)
+.+.........+|++.+||+ +|.| +..|++.|.+++|.|.. +.++||++
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r--------------------~~~~pfr~ 264 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR--------------------VLDKPFLM 264 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc--------------------ccccceEe
Confidence 111110011223577777765 4444 78999999999997743 13689999
Q ss_pred EEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC----CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cc
Q 008294 393 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK----GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (571)
Q Consensus 393 ~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~ 464 (571)
.|..+|..+++|.+..|+|.+|++++||.|+..+. +...+|++|.... .++++|.|||.+++ .|++ ++
T Consensus 265 ~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i 340 (447)
T PLN03127 265 PIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDV 340 (447)
T ss_pred eEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHC
Confidence 99999999999999999999999999999987643 3467888887553 67999999999998 6664 48
Q ss_pred cccceecCCC
Q 008294 465 ITGETLCDAD 474 (571)
Q Consensus 465 ~~Gdtl~~~~ 474 (571)
..|++||+++
T Consensus 341 ~rG~Vl~~~~ 350 (447)
T PLN03127 341 QRGQVICKPG 350 (447)
T ss_pred CCccEEecCC
Confidence 8999999874
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=316.21 Aligned_cols=274 Identities=27% Similarity=0.358 Sum_probs=221.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...||+++||+|+|||||+++|++..|.+... |.. ..+++++|..++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 457899999999999999999999998876543 322 2345689999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC--CCchhHHHHHHHHHhcCCC-eEEEEecCCccccch---hhhH
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF---FRTR 228 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~--g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~---~~~~ 228 (571)
+.++|||||||.+|...+..+++.+|++++|||+.+ ++..++.+++..+...++| +++|+||+|+...+. ....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999888875 788999999865321 1122
Q ss_pred HHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
+++++.+
T Consensus 164 ~~i~~~l------------------------------------------------------------------------- 170 (425)
T PRK12317 164 EEVSKLL------------------------------------------------------------------------- 170 (425)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222111
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCc
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENP 376 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~ 376 (571)
.........+|++.+||++|.|+++ |+++|.. +|.|..
T Consensus 171 -----------------~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~------------ 220 (425)
T PRK12317 171 -----------------KMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEK------------ 220 (425)
T ss_pred -----------------HhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCcc------------
Confidence 1000011135788999999999975 8888754 565532
Q ss_pred cccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEE
Q 008294 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (571)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv 456 (571)
+.+.||.+.|..++..+++|++..|+|.+|+++.||.|+..+.+...+|++|... ..++++|.|||.|
T Consensus 221 --------~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v 288 (425)
T PRK12317 221 --------PTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNI 288 (425)
T ss_pred --------ccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeE
Confidence 1368999999999999999999999999999999999999988888889988754 3789999999999
Q ss_pred EE--eCCC--CccccceecCCCCc
Q 008294 457 AL--AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 457 ~i--~gl~--~~~~Gdtl~~~~~~ 476 (571)
++ .+++ ++..|++||+++.+
T Consensus 289 ~i~l~~~~~~~i~rG~vl~~~~~~ 312 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCGHPDNP 312 (425)
T ss_pred EEEECCCCHHHccCccEecCCCCC
Confidence 87 4554 47899999987644
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=296.95 Aligned_cols=274 Identities=27% Similarity=0.344 Sum_probs=221.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...|++++||+++|||||+.+|+|.+|.+... |.- ..-.+.+|..++|++||+|++.+...++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999999999987651 110 1234779999999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCeE-EEEecCCccccch--
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRI-CFVNKMDRLGANF-- 224 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~-- 224 (571)
+.++|+|||||.||..+++.+..+||.+||||||..+ ...||++|+..++..++..+ |++||||...++.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999988 89999999999999999875 5689999987653
Q ss_pred -hhhHHHHHH---HhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHh
Q 008294 225 -FRTRDMIVT---NLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (571)
Q Consensus 225 -~~~~~~i~~---~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 300 (571)
+++..++.. .+|.+.
T Consensus 165 f~ei~~~v~~l~k~~G~~~------------------------------------------------------------- 183 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNP------------------------------------------------------------- 183 (428)
T ss_pred HHHHHHHHHHHHHHcCCCc-------------------------------------------------------------
Confidence 222222222 111111
Q ss_pred hcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCC
Q 008294 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAM 368 (571)
Q Consensus 301 ~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~ 368 (571)
.-+|++.+||++|.|+. .||++|. .+..|...
T Consensus 184 --------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~--- 227 (428)
T COG5256 184 --------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERP--- 227 (428)
T ss_pred --------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCC---
Confidence 11345555888887764 4777776 44444321
Q ss_pred CCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecC
Q 008294 369 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVK 448 (571)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~ 448 (571)
-+.||++.|.+++...++|++..|||-+|.|++||+|+..+.+...+|+++..- .++++
T Consensus 228 -----------------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~ 286 (428)
T COG5256 228 -----------------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEIS 286 (428)
T ss_pred -----------------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccc
Confidence 379999999999998899999999999999999999999998888889888755 38899
Q ss_pred eecCCCEEEE--eCCC--CccccceecCCCCcccc
Q 008294 449 VALAGDIIAL--AGLK--DTITGETLCDADHPILL 479 (571)
Q Consensus 449 ~a~aGdiv~i--~gl~--~~~~Gdtl~~~~~~~~l 479 (571)
.+.|||.+.+ +|++ +++.||++++.+++...
T Consensus 287 ~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~ 321 (428)
T COG5256 287 QAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTV 321 (428)
T ss_pred cCCCCCeEEEEecCCchhccCCccEeccCCCCccc
Confidence 9999999988 5554 49999999998877543
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=310.17 Aligned_cols=271 Identities=27% Similarity=0.364 Sum_probs=215.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...||+++||+|+|||||+++|++....... +. ......+|+.++|+++|+|++.....+.+++.+++|+|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~-~~-~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG-AE-AKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccC-Cc-ccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 45789999999999999999999864321110 11 11223689999999999999999888888899999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccc--hhhhHHHHHHHhCCcceeeec
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN--FFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|...+..++..+|++++|||+.+|+..++++++..+...++|.+ +++||+|+...+ ++.+.+++++.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~---------- 157 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL---------- 157 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHH----------
Confidence 99999999999999999999999999999999999999999987 589999986421 11111122211
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
T Consensus 158 -------------------------------------------------------------------------------- 157 (396)
T PRK00049 158 -------------------------------------------------------------------------------- 157 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcccCcceeeeeccccCCC----------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEE
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLA 394 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~----------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 394 (571)
+.........+|++++||++|. |+..|+++|.+++|.|.. +.+.||.+.|
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~--------------------~~~~p~r~~I 217 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPER--------------------AIDKPFLMPI 217 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCC--------------------CCCCCeEEEE
Confidence 1111111223678888998864 678999999999987743 1368999999
Q ss_pred EEEeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccc
Q 008294 395 FKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGE 468 (571)
Q Consensus 395 ~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gd 468 (571)
..+|..+++|.++.|+|.+|++++||.|+..+. ++..+|++|...+ +++++|.|||.+++ .|++ ++..|+
T Consensus 218 ~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~ 293 (396)
T PRK00049 218 EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQ 293 (396)
T ss_pred EEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcce
Confidence 999999999999999999999999999987654 5667888887543 78999999999998 6663 488999
Q ss_pred eecCCC
Q 008294 469 TLCDAD 474 (571)
Q Consensus 469 tl~~~~ 474 (571)
+||+++
T Consensus 294 vl~~~~ 299 (396)
T PRK00049 294 VLAKPG 299 (396)
T ss_pred EEecCC
Confidence 999875
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=312.81 Aligned_cols=304 Identities=24% Similarity=0.287 Sum_probs=235.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCe-EEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~liDTPG~~ 166 (571)
.+.++|+++||+|+|||||+++|..... . ....+|+|.+.....+.+.+. .++|||||||.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v---~---------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV---A---------------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc---c---------------cccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 4668999999999999999999962110 0 011357888888778887655 89999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+|...+.++++.+|++|+|||+.+|...|+.+++..+...++|+++++||+|+.+++.+++.+++++ ++.
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~--------- 216 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGL--------- 216 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhh---------
Confidence 9999999999999999999999999999999999999999999999999999976554433333321 000
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
..+.
T Consensus 217 -----------------------------------------------------------~~~~----------------- 220 (587)
T TIGR00487 217 -----------------------------------------------------------VPED----------------- 220 (587)
T ss_pred -----------------------------------------------------------hHHh-----------------
Confidence 0000
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
.+...|++.+||++|.|+++|+++|.... ... ....+++.|+.+.|++++.+++.|.+
T Consensus 221 ----~~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~-----------------~l~~~~~~~~~~~V~ev~~~~g~G~v 278 (587)
T TIGR00487 221 ----WGGDTIFVPVSALTGDGIDELLDMILLQS-EVE-----------------ELKANPNGQASGVVIEAQLDKGRGPV 278 (587)
T ss_pred ----cCCCceEEEEECCCCCChHHHHHhhhhhh-hhc-----------------cccCCCCCCceeEEEEEEEeCCCcEE
Confidence 01124788899999999999999997421 000 01234678999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCc---------
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP--------- 476 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~--------- 476 (571)
++++|++|+|++||.|...+. ..+|..++..+ ...+++|.||++|.|.|++++ .+||+|+-..+.
T Consensus 279 ~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~ 353 (587)
T TIGR00487 279 ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEK 353 (587)
T ss_pred EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCC---CCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHH
Confidence 999999999999999988764 23555555444 367999999999999999987 899999732111
Q ss_pred ---------------ccccCCCC-----CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEE
Q 008294 477 ---------------ILLERMDF-----PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSR 522 (571)
Q Consensus 477 ---------------~~l~~~~~-----~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~ 522 (571)
..+..+.. ..+.+.+.|++...+..+.|.++|.++..+++++.+-.
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 354 RAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 11222211 14889999999999999999999999999999988754
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=305.78 Aligned_cols=271 Identities=24% Similarity=0.269 Sum_probs=208.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcce--eeeee-----cC--------cccccchhhhhhhceeEeeceEEEeecCeE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVH-----EG--------TATMDWMEQEQERGITITSAATTTYWNKHR 156 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~-----~g--------~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 156 (571)
+|+++||+|+|||||+++|++.+|.+.. .+.+. .| ++++|..++|++||+|++.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7899999999999999999999998765 22221 22 358999999999999999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHh
Q 008294 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNL 235 (571)
Q Consensus 157 i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l 235 (571)
++|||||||.+|..++..++..+|++++|||+.+|+..|+++++..+...++| +++|+||+|+...+. +.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~-~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDE-EVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886 567999999865331 1122221111
Q ss_pred CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCC
Q 008294 236 GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315 (571)
Q Consensus 236 ~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~ 315 (571)
T Consensus 161 -------------------------------------------------------------------------------- 160 (406)
T TIGR02034 161 -------------------------------------------------------------------------------- 160 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcccccccc
Q 008294 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEATLERA 383 (571)
Q Consensus 316 ~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~ 383 (571)
...++... ...+|++.+||++|.|+.. |++.|.. +|.|..
T Consensus 161 ------~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~------------------- 212 (406)
T TIGR02034 161 ------LAFAEQLG--FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD------------------- 212 (406)
T ss_pred ------HHHHHHcC--CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC-------------------
Confidence 00011000 0124677889999999874 6777755 444432
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeC--C
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAG--L 461 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~g--l 461 (571)
+.+.||.+.|..++.....+.-..|+|.+|+|++||.|+..+.+...+|++|.... .++++|.|||.+++.- .
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD----GDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC----cccCEeCCCCEEEEEECCc
Confidence 13578888777765432222225699999999999999998888888999987543 5799999999999953 3
Q ss_pred CCccccceecCCCCc
Q 008294 462 KDTITGETLCDADHP 476 (571)
Q Consensus 462 ~~~~~Gdtl~~~~~~ 476 (571)
+++..|++||+++.+
T Consensus 288 ~~i~rG~vl~~~~~~ 302 (406)
T TIGR02034 288 IDISRGDLLAAADSA 302 (406)
T ss_pred cccCCccEEEcCCCC
Confidence 458899999988654
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=306.77 Aligned_cols=278 Identities=28% Similarity=0.366 Sum_probs=217.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee------------e-eecCcccccchhhhhhhceeEeeceEEEeec
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYWN 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~ 153 (571)
.+..+||+++||+|+|||||+++|++.+|.+.... . .....+.+|..++|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34578999999999999999999999888764311 0 0112357899999999999999999999999
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC---CchhHHHHHHHHHhcCC-CeEEEEecCCccccchhhhHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG---VEPQSETVWRQADKYGV-PRICFVNKMDRLGANFFRTRD 229 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g---~~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~~~~~~~~ 229 (571)
+..++|||||||.+|...+..+++.+|++++|||+.++ ...++.+++..+...++ |+++|+||+|+...+..+ ++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~-~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEE-FE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHH-HH
Confidence 99999999999999999999999999999999999998 77888888877777775 477899999986432111 11
Q ss_pred HHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 008294 230 MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMES 309 (571)
Q Consensus 230 ~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~ 309 (571)
.+.
T Consensus 163 ~~~----------------------------------------------------------------------------- 165 (426)
T TIGR00483 163 AIK----------------------------------------------------------------------------- 165 (426)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 111
Q ss_pred HhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCcc
Q 008294 310 YLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPE 377 (571)
Q Consensus 310 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~ 377 (571)
+++.+.++........+|++.+||++|.|+.+ |+++|.+ +|.|..
T Consensus 166 ---------~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~------------- 222 (426)
T TIGR00483 166 ---------KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK------------- 222 (426)
T ss_pred ---------HHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC-------------
Confidence 01111111111111235788899999999874 8888865 554432
Q ss_pred ccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEE
Q 008294 378 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 457 (571)
Q Consensus 378 ~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~ 457 (571)
+.+.||.+.|..++..+++|+++.|||.+|+|+.||.|...+.+...+|++|.... .++++|.|||+++
T Consensus 223 -------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~ 291 (426)
T TIGR00483 223 -------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH----EQIEQAEPGDNIG 291 (426)
T ss_pred -------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC----cccCEEcCCCEEE
Confidence 13689999999999999999999999999999999999999988888899987553 7899999999998
Q ss_pred E--eCCC--CccccceecCCCCc
Q 008294 458 L--AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 458 i--~gl~--~~~~Gdtl~~~~~~ 476 (571)
+ .+++ ++..|++|++++.+
T Consensus 292 i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 292 FNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EEECCCChhhcccceEEecCCCC
Confidence 8 5553 48899999987543
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=303.26 Aligned_cols=277 Identities=24% Similarity=0.246 Sum_probs=211.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeee-------------ecCcccccchhhhhhhceeEeeceEEEe
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEV-------------HEGTATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~-------------~~g~~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
.+...+|+++||+|+|||||+++|++.+|.+.. .+++ ....+++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 455789999999999999999999999998765 2222 1223589999999999999999999999
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHH
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~ 230 (571)
+++.+++|||||||.+|..++..++..+|++++|||+.+|+..|+++++..+...+++ +++|+||+|+...+. +.++.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~ 182 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFER 182 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999888864 677999999865331 11221
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~ 310 (571)
+.+.+
T Consensus 183 i~~~l--------------------------------------------------------------------------- 187 (474)
T PRK05124 183 IREDY--------------------------------------------------------------------------- 187 (474)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 21110
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 008294 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (571)
Q Consensus 311 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (571)
...+... ......|++.+||++|.|+.. |++.| +.+|.|..
T Consensus 188 -----------~~~~~~~-~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~-------------- 240 (474)
T PRK05124 188 -----------LTFAEQL-PGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV-------------- 240 (474)
T ss_pred -----------HHHHHhc-CCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC--------------
Confidence 0001000 001235788889999999864 55544 45554432
Q ss_pred cccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE
Q 008294 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (571)
Q Consensus 379 ~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i 458 (571)
+.+.|+.+.|..++...+...-..|+|.+|+|+.||.|+..+.+...+|++|...+ .++++|.|||.|++
T Consensus 241 ------~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~----~~v~~A~aG~~V~l 310 (474)
T PRK05124 241 ------VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD----GDLEEAFAGEAITL 310 (474)
T ss_pred ------CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcC----ccccCcCCCCEEEE
Confidence 13678999888776432211224699999999999999999988888999998554 57899999999999
Q ss_pred eC--CCCccccceecCCCCc
Q 008294 459 AG--LKDTITGETLCDADHP 476 (571)
Q Consensus 459 ~g--l~~~~~Gdtl~~~~~~ 476 (571)
.- ..++..|++||+++.+
T Consensus 311 ~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 311 VLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred EeCCccccCCccEEECCCCC
Confidence 53 3458899999987654
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=270.25 Aligned_cols=274 Identities=28% Similarity=0.406 Sum_probs=212.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...||+.|||+|+|||||..++........ +.........|..|+|++||+|++.+.+.++..+..+-.+|||||.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 34578999999999999999999962221100 0101111234667899999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
||.+.++.+..++|++|+||.|.+|..+||++|+..+++.++|.++ ++||+|+.+..
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~---------------------- 144 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE---------------------- 144 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH----------------------
Confidence 9999999999999999999999999999999999999999998765 68999987521
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
+++|.+. .|+++.|
T Consensus 145 ------------------------------------------------ellelVe------------------mEvreLL 158 (394)
T COG0050 145 ------------------------------------------------ELLELVE------------------MEVRELL 158 (394)
T ss_pred ------------------------------------------------HHHHHHH------------------HHHHHHH
Confidence 1111111 2333444
Q ss_pred HhhcccCcceeeeeccccCCC--------ChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEE
Q 008294 326 RKGTIAGSFVPVLCGSAFKNK--------GVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~--------Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 397 (571)
...-..+.-.||+.+||+.-. -|.+|++++.+++|.|.. +.+.||.+.|-.+
T Consensus 159 s~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per--------------------~~dkPflmpvEdv 218 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER--------------------DIDKPFLMPVEDV 218 (394)
T ss_pred HHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--------------------cccccccccceee
Confidence 444445556789999988642 267999999999999975 2479999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccceec
Q 008294 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLC 471 (571)
Q Consensus 398 ~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~ 471 (571)
|...+.|++++|||-+|+|+.|+.+....-. ++..+..+-++ ++..++..|||.+++ +|.+ ++..|.+|+
T Consensus 219 fsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 219 FSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred EEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEee
Confidence 9999999999999999999999999865433 22334443323 367899999999877 6664 488999998
Q ss_pred CCC
Q 008294 472 DAD 474 (571)
Q Consensus 472 ~~~ 474 (571)
.++
T Consensus 295 kpg 297 (394)
T COG0050 295 KPG 297 (394)
T ss_pred cCC
Confidence 764
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=306.39 Aligned_cols=298 Identities=22% Similarity=0.294 Sum_probs=230.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----cCeEEEEEcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDT 162 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~liDT 162 (571)
..+.++|+++||+|||||||+++|....+.. ...+|+|.......+.+ .+..++||||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDT 302 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDT 302 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEEecCCceEEEEEEC
Confidence 3477899999999999999999997433221 11246676665555544 3589999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
|||.+|...+.++++.+|++|+|||+.+|+..++.+++..+...++|+++|+||+|+...+..++.+++... +.
T Consensus 303 PGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l----- 376 (742)
T CHL00189 303 PGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL----- 376 (742)
T ss_pred CcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc-----
Confidence 999999999999999999999999999999999999999999999999999999998765443333332210 00
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
+. +
T Consensus 377 ---------------------------------------------------------------l~-----------e--- 379 (742)
T CHL00189 377 ---------------------------------------------------------------IP-----------E--- 379 (742)
T ss_pred ---------------------------------------------------------------ch-----------H---
Confidence 00 0
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCC
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 402 (571)
..+..+|++++||++|.|+++|+++|..+...+. ..++++.|+.++|+++..|++
T Consensus 380 -------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~------------------lk~~~~~~~~g~V~e~~iD~~ 434 (742)
T CHL00189 380 -------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED------------------LKADPTQLAQGIILEAHLDKT 434 (742)
T ss_pred -------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc------------------ccCCCCCCceEEEEEEEEcCC
Confidence 0123568999999999999999999987642111 123457899999999999999
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceecCCCCcc----
Q 008294 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLCDADHPI---- 477 (571)
Q Consensus 403 ~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~~~~~---- 477 (571)
.|.+++++|++|+|+.||.|++.+ +.++++.|.+....++++|.|||+|.|.|+++ ..+||+|.-..+.-
T Consensus 435 ~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~ 509 (742)
T CHL00189 435 KGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKL 509 (742)
T ss_pred CceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHH
Confidence 999999999999999999999876 35677778877789999999999999999955 66899996322110
Q ss_pred -----------------cccCC-----CCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhC
Q 008294 478 -----------------LLERM-----DFPDPVIKVAIEPKTKADIDKMANGLIKLAQED 515 (571)
Q Consensus 478 -----------------~l~~~-----~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eD 515 (571)
.+... .--.+.+.+-|.+..++..+.+..+|.++..+.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~ 569 (742)
T CHL00189 510 KIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK 569 (742)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc
Confidence 00000 012467889999999999999999999985543
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=279.60 Aligned_cols=273 Identities=29% Similarity=0.401 Sum_probs=217.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+..-||+.|||+++|||||..++....-.. -+.......-.|..++|+.||||++...+.++...+.+--+|||||.|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~--g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEK--GGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhc--cccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 346799999999999999999995221100 011111113356678999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccc-cchhhhHHHHHHHhCCcceeeecc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
|.+.++.+..+.|++|+||.|++|..+||++|+.++++.+++.++ ++||.|... .+.-++++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVE---------------- 193 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVE---------------- 193 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHH----------------
Confidence 999999999999999999999999999999999999999999765 589999873 22111111
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
=|+++.|
T Consensus 194 -------------------------------------------------------------------------mE~RElL 200 (449)
T KOG0460|consen 194 -------------------------------------------------------------------------MEIRELL 200 (449)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 2344444
Q ss_pred HhhcccCcceeeeeccccCC-------CC---hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEE
Q 008294 326 RKGTIAGSFVPVLCGSAFKN-------KG---VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~-------~G---v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (571)
...-..+.-+||++|||+.- .| |..|||++.+++|.|.. +-+.||.+.|-
T Consensus 201 se~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--------------------~~~~pFl~pie 260 (449)
T KOG0460|consen 201 SEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--------------------DLDKPFLLPIE 260 (449)
T ss_pred HHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--------------------ccCCCceeehh
Confidence 55555667789999998752 22 67899999999999975 24789999999
Q ss_pred EEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cccccce
Q 008294 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGET 469 (571)
Q Consensus 396 k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdt 469 (571)
.+|..+++|+++.||+-+|+|++||.+-....++ +..|..|.+++ ..+++|.|||.+++ +|++ +++.|.+
T Consensus 261 ~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmv 336 (449)
T KOG0460|consen 261 DVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMV 336 (449)
T ss_pred heeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccE
Confidence 9999999999999999999999999998655443 34466665444 78999999999987 7776 5899999
Q ss_pred ecCCCC
Q 008294 470 LCDADH 475 (571)
Q Consensus 470 l~~~~~ 475 (571)
+|.++.
T Consensus 337 l~~pGs 342 (449)
T KOG0460|consen 337 LAKPGS 342 (449)
T ss_pred EecCCc
Confidence 998765
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=290.25 Aligned_cols=256 Identities=20% Similarity=0.273 Sum_probs=200.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------------c
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------N 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------~ 153 (571)
...+|+++||++||||||+.+|. | ...+.+++|++||+|++..+..+.+ .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLt---g------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~ 97 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALS---G------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYG 97 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHh---C------------CCcccchhhHHhCCchhccccccccccCcccCCcccccccC
Confidence 35789999999999999999995 2 2346678999999999988775521 0
Q ss_pred ------------------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCC-eEEE
Q 008294 154 ------------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVP-RICF 213 (571)
Q Consensus 154 ------------------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p-~ivv 213 (571)
...++|||||||.+|..++..++..+|++++|||+.++ +..||++++..+...+++ +++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv 177 (460)
T PTZ00327 98 SSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 177 (460)
T ss_pred CCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence 24799999999999999999999999999999999986 799999999999989887 5789
Q ss_pred EecCCccccc-hhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHH
Q 008294 214 VNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYR 292 (571)
Q Consensus 214 iNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (571)
+||+|+...+ ..+.++++++.+
T Consensus 178 lNKiDlv~~~~~~~~~~ei~~~l--------------------------------------------------------- 200 (460)
T PTZ00327 178 QNKIDLVKEAQAQDQYEEIRNFV--------------------------------------------------------- 200 (460)
T ss_pred EecccccCHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 9999986432 122222222111
Q ss_pred HHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCC
Q 008294 293 SQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTD 372 (571)
Q Consensus 293 ~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~ 372 (571)
... .....|++.+||++|.|++.|++.|.+.+|.|..
T Consensus 201 ---------------------------------~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r-------- 237 (460)
T PTZ00327 201 ---------------------------------KGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKR-------- 237 (460)
T ss_pred ---------------------------------Hhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCC--------
Confidence 000 0124589999999999999999999999988743
Q ss_pred CCCccccccccCCCCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCCC-------------cee
Q 008294 373 PENPEATLERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKG-------------KKE 431 (571)
Q Consensus 373 ~~~~~~~~~~~~~~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~~-------------~~~ 431 (571)
+.+.|+.++|.+.|... ++|.+..|+|.+|++++||.|...+.+ ...
T Consensus 238 ------------~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~ 305 (460)
T PTZ00327 238 ------------DLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRT 305 (460)
T ss_pred ------------CCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceE
Confidence 13678999998877443 379999999999999999999988754 235
Q ss_pred ecceEEEeccCceeecCeecCCCEEEEe-----CCC--CccccceecCCCC
Q 008294 432 RIGRLLEMHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 475 (571)
Q Consensus 432 ~i~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~ 475 (571)
+|++|... ..++++|.|||.++|. +++ ++..|++|+.++.
T Consensus 306 ~VksI~~~----~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 306 RIVSLFAE----NNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred EEEEEEEC----CeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 77777643 4889999999999994 332 3678999998653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=299.32 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=203.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~~ 170 (571)
.|+++||+|+|||||+++|. |. .+|..++|+++|+|+......+.. ++..++|||||||.+|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g~------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---GV------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---CC------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 58999999999999999995 21 246677899999999998777755 467899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccc-hhhhHHHHHHHhCCcceeeeccCCC
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGA 248 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (571)
.+..++..+|++++|||+.+|+.+|+++++..+...++|. ++|+||+|+...+ ...+.+++++.+
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l------------- 133 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL------------- 133 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999996 6899999986432 122222222111
Q ss_pred CCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 008294 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (571)
Q Consensus 249 ~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~ 328 (571)
...
T Consensus 134 -----------------------------------------------------------------------------~~~ 136 (614)
T PRK10512 134 -----------------------------------------------------------------------------REY 136 (614)
T ss_pred -----------------------------------------------------------------------------Hhc
Confidence 000
Q ss_pred cccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEE
Q 008294 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (571)
Q Consensus 329 ~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~ 408 (571)
.....|++++||++|.|+++|++.|.++. .|.. +.++||.+.|.++|..++.|+++.
T Consensus 137 --~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~~--------------------~~~~~~rl~Id~vf~v~G~GtVvt 193 (614)
T PRK10512 137 --GFAEAKLFVTAATEGRGIDALREHLLQLP-EREH--------------------AAQHRFRLAIDRAFTVKGAGLVVT 193 (614)
T ss_pred --CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-cccc--------------------CcCCCceEEEEEEeccCCCeEEEE
Confidence 01135789999999999999999998764 3322 136899999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eC-CC--CccccceecCCC
Q 008294 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LK--DTITGETLCDAD 474 (571)
Q Consensus 409 ~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l~--~~~~Gdtl~~~~ 474 (571)
|+|.+|+++.||.|...+.+...+|++|.... .++++|.|||.+++ .| ++ ++..||+||+++
T Consensus 194 Gtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~----~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 194 GTALSGEVKVGDTLWLTGVNKPMRVRGLHAQN----QPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred EEEecceEecCCEEEEcCCCCcEEEEEEecCC----cCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 99999999999999998888888888876442 78999999999988 44 53 488999999764
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=281.39 Aligned_cols=259 Identities=22% Similarity=0.316 Sum_probs=200.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 153 (571)
+...||+++||.|+|||||+++|. + .++|..++|+++|+|+......+.+.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~---~------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT---G------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh---C------------eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 345899999999999999999994 2 24788899999999999876543331
Q ss_pred ------------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCc
Q 008294 154 ------------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDR 219 (571)
Q Consensus 154 ------------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~ 219 (571)
.+.++|||||||.+|...+..++..+|++++|+|+.++. ..++.+++..+...++ |+++|+||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 268999999999999999999999999999999999988 7899999988888876 47889999998
Q ss_pred cccch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHH
Q 008294 220 LGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIET 298 (571)
Q Consensus 220 ~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~ 298 (571)
...+. ....+++++.
T Consensus 152 ~~~~~~~~~~~~i~~~---------------------------------------------------------------- 167 (411)
T PRK04000 152 VSKERALENYEQIKEF---------------------------------------------------------------- 167 (411)
T ss_pred ccchhHHHHHHHHHHH----------------------------------------------------------------
Confidence 65321 0111111110
Q ss_pred HhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 008294 299 IVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (571)
Q Consensus 299 ~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (571)
+ ... .....|++.+||++|.|+++|++.|.+.+|.|..
T Consensus 168 ------------l--------------~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~-------------- 205 (411)
T PRK04000 168 ------------V--------------KGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPER-------------- 205 (411)
T ss_pred ------------h--------------ccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC--------------
Confidence 0 000 0123578999999999999999999999887743
Q ss_pred cccccCCCCCCeEEEEEEEeec--------CCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEE
Q 008294 379 TLERAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLE 438 (571)
Q Consensus 379 ~~~~~~~~~~p~~~~V~k~~~d--------~~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~ 438 (571)
+.+.|+.+.|.++|.. +++|.+..|||.+|+|++||.|...+.+. ..+|++|..
T Consensus 206 ------~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~ 279 (411)
T PRK04000 206 ------DLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA 279 (411)
T ss_pred ------CCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE
Confidence 1368999999988743 34677999999999999999999887642 357888764
Q ss_pred eccCceeecCeecCCCEEEEe-----CCC--CccccceecCCCCcc
Q 008294 439 MHANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADHPI 477 (571)
Q Consensus 439 ~~g~~~~~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~~~ 477 (571)
. ..++++|.|||.++|. +++ ++..|++||+++.+.
T Consensus 280 ~----~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~ 321 (411)
T PRK04000 280 G----GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLP 321 (411)
T ss_pred C----CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCC
Confidence 4 3889999999999884 332 377899999886543
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=297.53 Aligned_cols=277 Identities=25% Similarity=0.231 Sum_probs=209.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee--e-----eeecC--------cccccchhhhhhhceeEeeceEEE
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--G-----EVHEG--------TATMDWMEQEQERGITITSAATTT 150 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~--g-----~~~~g--------~~~~d~~~~e~~~g~t~~~~~~~~ 150 (571)
..+...+|+++||+|+|||||+++|++..|.+... + ....| ++.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 33445689999999999999999999998876521 1 11223 357899999999999999999999
Q ss_pred eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHH
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRD 229 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~ 229 (571)
.+++.+++|||||||.+|...+..++..+|++++|||+.+|+..++++++..+...+++ +++|+||+|+...+.+ .++
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~ 178 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFD 178 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHH
Confidence 99999999999999999999999999999999999999999999999999999888864 6678999998643211 111
Q ss_pred HHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 008294 230 MIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMES 309 (571)
Q Consensus 230 ~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~ 309 (571)
.+..
T Consensus 179 ~i~~---------------------------------------------------------------------------- 182 (632)
T PRK05506 179 EIVA---------------------------------------------------------------------------- 182 (632)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCCCCcc
Q 008294 310 YLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDPENPE 377 (571)
Q Consensus 310 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~~~~~~~~~ 377 (571)
++...+.... ...+|++++||++|.|+. .|++.|... |.|..
T Consensus 183 ----------~i~~~~~~~~--~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~-~~~~~------------- 236 (632)
T PRK05506 183 ----------DYRAFAAKLG--LHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV-EIASD------------- 236 (632)
T ss_pred ----------HHHHHHHHcC--CCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC-CCCCC-------------
Confidence 0000010000 012467788999999986 477777544 43322
Q ss_pred ccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEE
Q 008294 378 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 457 (571)
Q Consensus 378 ~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~ 457 (571)
..+.|+.+.|..++...+.+.-..|+|.+|+|++||.|...+.+...+|++|...+ .++++|.|||.|+
T Consensus 237 -------~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~ 305 (632)
T PRK05506 237 -------RNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPD----GDLDEAFAGQAVT 305 (632)
T ss_pred -------cCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECC----ceeCEEcCCCeEE
Confidence 13678999888776533222225699999999999999999888888999997543 6699999999999
Q ss_pred EeC--CCCccccceecCCCCc
Q 008294 458 LAG--LKDTITGETLCDADHP 476 (571)
Q Consensus 458 i~g--l~~~~~Gdtl~~~~~~ 476 (571)
|.- -.++..|++||+++.+
T Consensus 306 i~l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 306 LTLADEIDISRGDMLARADNR 326 (632)
T ss_pred EEecCccccCCccEEecCCCC
Confidence 953 2347899999988654
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=276.50 Aligned_cols=256 Identities=22% Similarity=0.323 Sum_probs=198.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
...||+++||+|+|||||+++|. + ..+|..++|+++|+|+......+.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---~------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---G------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---C------------eecccCHhHHHcCceeEecccccccccccccCccccccccc
Confidence 35799999999999999999994 2 2367888999999999988654431
Q ss_pred ----------cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCC-eEEEEecCCcc
Q 008294 153 ----------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRL 220 (571)
Q Consensus 153 ----------~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p-~ivviNK~D~~ 220 (571)
.+..+++||||||.+|...+..++..+|++++|||+.+|. ..++.+++..+...+++ +++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 1468999999999999999999999999999999999998 89999999988888765 78889999986
Q ss_pred ccch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHH
Q 008294 221 GANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (571)
Q Consensus 221 ~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (571)
..+. .+.++++.+.
T Consensus 148 ~~~~~~~~~~~i~~~----------------------------------------------------------------- 162 (406)
T TIGR03680 148 SKEKALENYEEIKEF----------------------------------------------------------------- 162 (406)
T ss_pred CHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence 5321 1111111110
Q ss_pred hhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 008294 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (571)
Q Consensus 300 ~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (571)
+... ...-+|++.+||++|.|+++|+++|.+.+|.|..
T Consensus 163 -------------------------l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~--------------- 200 (406)
T TIGR03680 163 -------------------------VKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPER--------------- 200 (406)
T ss_pred -------------------------hhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCC---------------
Confidence 0000 0112578999999999999999999999887743
Q ss_pred ccccCCCCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEe
Q 008294 380 LERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEM 439 (571)
Q Consensus 380 ~~~~~~~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~ 439 (571)
+.+.|+.+.|...|... ++|.+..|+|.+|+|++||.|...+.+. ..+|++|...
T Consensus 201 -----~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~ 275 (406)
T TIGR03680 201 -----DLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG 275 (406)
T ss_pred -----CCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC
Confidence 13679999999888543 3678999999999999999999877542 2467777644
Q ss_pred ccCceeecCeecCCCEEEEe-----CCC--CccccceecCCCC
Q 008294 440 HANSREDVKVALAGDIIALA-----GLK--DTITGETLCDADH 475 (571)
Q Consensus 440 ~g~~~~~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~ 475 (571)
..++++|.|||.++|. +++ ++..|++||+++.
T Consensus 276 ----~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 276 ----GYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ----CEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC
Confidence 3889999999999983 332 3678999998754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=285.32 Aligned_cols=254 Identities=23% Similarity=0.287 Sum_probs=205.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++||+|||||||+++|. |. ..+..++|.++|+|++.....+.+++..++|||||||.+|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt---g~------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT---GI------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh---Cc------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 79999999999999999995 21 1355678889999999998888888899999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccch-hhhHHHHHHHhCCcceeeeccCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
+..++..+|++++|||+.+|+..++.+++..+...++| +++|+||+|+...+. ..+.+++++.
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~--------------- 131 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI--------------- 131 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999 999999999865321 1111111110
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
+..+
T Consensus 132 ---------------------------------------------------------l~~~------------------- 135 (581)
T TIGR00475 132 ---------------------------------------------------------LNSY------------------- 135 (581)
T ss_pred ---------------------------------------------------------HHHh-------------------
Confidence 0000
Q ss_pred ccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEE
Q 008294 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~ 409 (571)
......|++.+||++|.|++++++.|.+.++..... ..++||.+.|.++|..++.|+++.|
T Consensus 136 ~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~-------------------~~~~p~r~~Id~~f~v~G~GtVv~G 196 (581)
T TIGR00475 136 IFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK-------------------RIQKPLRMAIDRAFKVKGAGTVVTG 196 (581)
T ss_pred CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc-------------------CcCCCcEEEEEEEEecCCcEEEEEE
Confidence 000125788999999999999999998776443210 1368999999999999999999999
Q ss_pred EEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--CccccceecCCC
Q 008294 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 474 (571)
Q Consensus 410 rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 474 (571)
+|.+|+++.||.|...+.+...+|++|... ..++++|.|||.++| .|++ ++..|.+++++.
T Consensus 197 ~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~ 261 (581)
T TIGR00475 197 TAFSGEVKVGDNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPE 261 (581)
T ss_pred EEecceEecCCEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCC
Confidence 999999999999999998888899999754 278999999999999 4554 377897776543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=253.82 Aligned_cols=145 Identities=37% Similarity=0.491 Sum_probs=128.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~ 165 (571)
++++||+++||+|+|||||+++|++..+.....+....+.+..+..+.|+++|+|+......+. +.++.++|||||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 4689999999999999999999998888766554433334568899999999999999999999 99999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHH
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (571)
.+|..++.++++.+|++|+|||+.+|+..++.+++..+...++|+++|+||+|+...++.+.+++++
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998655555555554
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=258.42 Aligned_cols=303 Identities=24% Similarity=0.342 Sum_probs=241.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~ 165 (571)
..+.+.|-|+||+++|||||+++|....-+ .++ ..|||...+.+.... .+..++|+|||||
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VA---A~E---------------~GGITQhIGAF~V~~p~G~~iTFLDTPGH 211 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVA---AGE---------------AGGITQHIGAFTVTLPSGKSITFLDTPGH 211 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCcee---hhh---------------cCCccceeceEEEecCCCCEEEEecCCcH
Confidence 457889999999999999999999622211 111 147888877776654 6789999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.-|.....++...+|.+++||.+.+|+.+||.+.+..++..++|+++++||||+++++++++.+++... |.
T Consensus 212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi-------- 282 (683)
T KOG1145|consen 212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI-------- 282 (683)
T ss_pred HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc--------
Confidence 999999999999999999999999999999999999999999999999999999999988877776531 10
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
..|.
T Consensus 283 ------------------------------------------------------------~~E~---------------- 286 (683)
T KOG1145|consen 283 ------------------------------------------------------------VVED---------------- 286 (683)
T ss_pred ------------------------------------------------------------cHHH----------------
Confidence 0011
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
.|.-++++.+||++|.|++.|.+++.-.. +..+++++|++|+.+.|.....|+++|.
T Consensus 287 -----~GGdVQvipiSAl~g~nl~~L~eaill~A------------------e~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 287 -----LGGDVQVIPISALTGENLDLLEEAILLLA------------------EVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred -----cCCceeEEEeecccCCChHHHHHHHHHHH------------------HHhhcccCCCCCceEEEEEeeecCCccc
Confidence 13346788889999999999999987542 2234566789999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCcc-------
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI------- 477 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~~------- 477 (571)
++.+-|-.|||++|+.|..... -.||+.++-..| +++++|.||.-+-|.|++++ ..||-+...+...
T Consensus 344 ~aT~iVkrGTLkKG~vlV~G~~--w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~ 418 (683)
T KOG1145|consen 344 VATVIVKRGTLKKGSVLVAGKS--WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLS 418 (683)
T ss_pred eeEEEEeccccccccEEEEech--hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHH
Confidence 9999999999999999876543 346777776666 88999999999999999996 4688773211000
Q ss_pred --------------------------------ccc--------CCCC--CCceEEEEEEeCCCCCHHHHHHHHHHHHhhC
Q 008294 478 --------------------------------LLE--------RMDF--PDPVIKVAIEPKTKADIDKMANGLIKLAQED 515 (571)
Q Consensus 478 --------------------------------~l~--------~~~~--~~Pv~~~avep~~~~d~~kl~~~L~kl~~eD 515 (571)
... .++. ..|.+.+-|....++..+.++++|+-|..+-
T Consensus 419 ~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~ 498 (683)
T KOG1145|consen 419 KRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQ 498 (683)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCc
Confidence 000 1222 2589999999999999999999999988665
Q ss_pred CeeEE
Q 008294 516 PSFHF 520 (571)
Q Consensus 516 psl~~ 520 (571)
-.+++
T Consensus 499 v~l~~ 503 (683)
T KOG1145|consen 499 VKLNV 503 (683)
T ss_pred eEEEE
Confidence 55555
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=258.59 Aligned_cols=301 Identities=25% Similarity=0.341 Sum_probs=232.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG~ 165 (571)
+.+.|+++||++||||||++.+-..+-+. ++ .-|+|.+.....+.++ ...|+|||||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~---~E---------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGH 65 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA---GE---------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGH 65 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc---cc---------------CCceeeEeeeEEEEeccCCCceEEEEcCCcH
Confidence 56789999999999999999995221111 11 2478999999988874 479999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
+-|+....++...+|.+|||||+.+|+.+||.+.+..++..++|+++++||||++.+++..+..++++. |..
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------- 137 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------- 137 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC-------
Confidence 999999999999999999999999999999999999999999999999999999999888877777652 110
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
.++
T Consensus 138 ------------------------------------------------------------------------~E~----- 140 (509)
T COG0532 138 ------------------------------------------------------------------------PEE----- 140 (509)
T ss_pred ------------------------------------------------------------------------Hhh-----
Confidence 000
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
.+..+.++.+||++|.|+++||++|.-.. +..+.+++++++..+.|.....+++.|.
T Consensus 141 -----~gg~v~~VpvSA~tg~Gi~eLL~~ill~a------------------ev~elka~~~~~a~gtviE~~~dkG~G~ 197 (509)
T COG0532 141 -----WGGDVIFVPVSAKTGEGIDELLELILLLA------------------EVLELKANPEGPARGTVIEVKLDKGLGP 197 (509)
T ss_pred -----cCCceEEEEeeccCCCCHHHHHHHHHHHH------------------HHHhhhcCCCCcceEEEEEEEeccCCCc
Confidence 12225677889999999999999997542 1224566789999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCcc-ccceecCCCCc--------
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTI-TGETLCDADHP-------- 476 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~-~Gdtl~~~~~~-------- 476 (571)
++..-|+.|||+.||.|....... +|..++ .....+++.+.++--+.+.|++++. .||......+.
T Consensus 198 vatviv~~GtL~~GD~iv~g~~~g--~I~t~v---~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~ 272 (509)
T COG0532 198 VATVIVQDGTLKKGDIIVAGGEYG--RVRTMV---DDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAE 272 (509)
T ss_pred eEEEEEecCeEecCCEEEEccCCC--ceEEee---hhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhh
Confidence 999999999999999998765432 344444 3444778888888777788877753 45555321110
Q ss_pred c--------------------cccCCCCCCce--EEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEE
Q 008294 477 I--------------------LLERMDFPDPV--IKVAIEPKTKADIDKMANGLIKLAQEDPSFHF 520 (571)
Q Consensus 477 ~--------------------~l~~~~~~~Pv--~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~ 520 (571)
. .+..+....+. +.+-+.+..++.++.|..+|+++.-..-.+++
T Consensus 273 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i 338 (509)
T COG0532 273 LRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRI 338 (509)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEE
Confidence 0 01222222334 89999999999999999999998776655444
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=255.66 Aligned_cols=249 Identities=24% Similarity=0.349 Sum_probs=210.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
.|+..||.++|||||+.++. | ...|..++|++||+|++....++..+++.+.|||.|||.+|...
T Consensus 2 ii~t~GhidHgkT~L~~alt---g------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c------------cccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 58899999999999999994 2 34578899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccc-hhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
+..++...|.+++|||+.+|++.||.+++..+...+++. ++|+||+|+.+.. .++..++|...+
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------- 132 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADL-------------- 132 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhc--------------
Confidence 999999999999999999999999999999999999998 8899999987532 222222221110
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
.
T Consensus 133 ----------------------------------------------------------------------------~--- 133 (447)
T COG3276 133 ----------------------------------------------------------------------------S--- 133 (447)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred ccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEE
Q 008294 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFV 409 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~ 409 (571)
-.-.|+|..|+++|.||++|-+.|.+..- +.+ -+.++||+.+|...|..+++|++..|
T Consensus 134 --l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e-------------------~d~~~~fri~IDraFtVKGvGTVVtG 191 (447)
T COG3276 134 --LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE-------------------RDEQKPFRIAIDRAFTVKGVGTVVTG 191 (447)
T ss_pred --cccccccccccccCCCHHHHHHHHHHhhh-hhh-------------------hccCCceEEEEeeEEEeccccEEEEe
Confidence 01236788899999999999999988764 211 13589999999999999999999999
Q ss_pred EEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--CccccceecCCC
Q 008294 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETLCDAD 474 (571)
Q Consensus 410 rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 474 (571)
.++||+++.||+++..+.|+..+|++|.... .++++|.||+.|++ .|.+ ++..|+.|..++
T Consensus 192 tv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 192 TVLSGEVKVGDKLYLSPINKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEeeeeEEECCEEEEecCCCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999999999999999887544 88999999999998 4442 367899998765
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=256.09 Aligned_cols=279 Identities=23% Similarity=0.302 Sum_probs=215.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEe
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
...+...+++++||+++|||||+.+|+|..|.+... |.- ....+++|...+|++||+|+......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 445568899999999999999999999999876541 211 3445789999999999999999999999
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCeE-EEEecCCccccc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN 223 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~ 223 (571)
...+.++|+|+|||.||..+++.+...||.+|||||++.| ...||++|...++..|+..+ |++||||..+++
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 9999999999999999999999999999999999999843 46799999999999999865 569999999876
Q ss_pred hhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcC
Q 008294 224 FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (571)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 303 (571)
.++ +++|+..++.
T Consensus 332 q~R-F~eIk~~l~~------------------------------------------------------------------ 344 (603)
T KOG0458|consen 332 QDR-FEEIKNKLSS------------------------------------------------------------------ 344 (603)
T ss_pred HHH-HHHHHHHHHH------------------------------------------------------------------
Confidence 443 3334333321
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhccc--CcceeeeeccccCCCChH---------------HHHHHHHHhCCCCCCCC
Q 008294 304 DEAMESYLEGNEPDEETIKKLIRKGTIA--GSFVPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDLP 366 (571)
Q Consensus 304 ~~l~e~~l~~~~~~~~~l~~~l~~~~~~--~~~~Pv~~~Sa~~~~Gv~---------------~Lld~i~~~lP~p~~~~ 366 (571)
||. + ..++.+ -.|+|+ |++.|.|+- .||+.|.. +-.|..
T Consensus 345 ------fL~----------~--~~gf~es~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~-- 400 (603)
T KOG0458|consen 345 ------FLK----------E--SCGFKESSVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER-- 400 (603)
T ss_pred ------HHH----------H--hcCcccCCcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCC--
Confidence 000 0 000001 134454 777777653 46777766 433432
Q ss_pred CCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceee
Q 008294 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSRED 446 (571)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~ 446 (571)
.-+.||++.|..++..+..|...+|||.+|.+.+||+||+.+......|+.|..- -.+
T Consensus 401 ------------------~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~ 458 (603)
T KOG0458|consen 401 ------------------PIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEP 458 (603)
T ss_pred ------------------cccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCc
Confidence 1356999999999999999999999999999999999999988877778877533 378
Q ss_pred cCeecCCCEEEE--eCCC--Cccccceec-CCCCc
Q 008294 447 VKVALAGDIIAL--AGLK--DTITGETLC-DADHP 476 (571)
Q Consensus 447 v~~a~aGdiv~i--~gl~--~~~~Gdtl~-~~~~~ 476 (571)
...|.|||.|.+ .++. .+..||++| .+..+
T Consensus 459 ~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~~ 493 (603)
T KOG0458|consen 459 KTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQFP 493 (603)
T ss_pred ceeEeeCCEEEEecCccChhhcccceeeecCCCcc
Confidence 899999999988 4543 377899999 44433
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=267.10 Aligned_cols=344 Identities=20% Similarity=0.252 Sum_probs=220.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.|.+.|+++||+|||||||+++|..........|.+ ..|.+..+....+...|.+.......+.+ ..++|||||||
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI--PGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc--CCEEEEECCCh
Confidence 356789999999999999999996332222222211 11222222211111122211110011111 13799999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+.++++.+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+.. ..... +.
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~---------~~------- 145 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTE---------DA------- 145 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhc---------Cc-------
Confidence 99999999999999999999999999999999999999999999999999999852 11000 00
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
.+-+.....-....+.+-+.+.+ +..+|.+..+..+.+..
T Consensus 146 ----------------------------------~~~e~~~~~~~~v~~~f~~~l~e-----v~~~L~~~g~~~e~~~~- 185 (586)
T PRK04004 146 ----------------------------------PFLESIEKQSQRVQQELEEKLYE-----LIGQLSELGFSADRFDR- 185 (586)
T ss_pred ----------------------------------hHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHhcCCChhhhhh-
Confidence 00000000000001111111100 11233333344333222
Q ss_pred HHhhcccCcceeeeeccccCCCChHHHHHHHHH----hCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeec
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD----YLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD 400 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~----~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d 400 (571)
++. .+..+|++.+||++|.|+++|++.+.. ++|.+.. .+++.|+.+.|++++.+
T Consensus 186 ~~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~-------------------~~~~~~~~~~V~ev~~~ 243 (586)
T PRK04004 186 VKD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLK-------------------IDVEGPGKGTVLEVKEE 243 (586)
T ss_pred hhc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhc-------------------cCCCCCeEEEEEEEEEe
Confidence 111 234578889999999999999998864 2333332 23578999999999999
Q ss_pred CCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEec--------cCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 401 PFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 401 ~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
++.|.+++++|++|+|++||.|...+.+. ..+|+.|+... +.....+++|.|..-+-| .|++++..|+
T Consensus 244 ~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~ 323 (586)
T PRK04004 244 RGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGS 323 (586)
T ss_pred CCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCC
Confidence 99999999999999999999999877653 35788887652 123467778777766655 4998888898
Q ss_pred eecCCCCcc----------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 469 TLCDADHPI----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 469 tl~~~~~~~----------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
.+.-..+.- .+....+....+.+.|.+...+..+.+.++|+++
T Consensus 324 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivkad~~Gs~EAi~~~l~~~ 376 (586)
T PRK04004 324 PLRVVRDEDVEEVKEEVEEEIEEIRIETDEEGVVVKADTLGSLEALVNELREE 376 (586)
T ss_pred eEEEeCcHHHHHHHHHHHHHHHhccccccccCEEEEeCCccHHHHHHHHHHhC
Confidence 875332110 0111222345678889999999999999999875
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=238.42 Aligned_cols=289 Identities=24% Similarity=0.311 Sum_probs=222.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEEEeec---------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWN--------- 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~~--------- 153 (571)
.....+++..||+|+|||||+.+|. .|..++|. .+.|..++|.++|.|...+..-+-++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 3456789999999999999999996 34455543 67889999999999988776665541
Q ss_pred --------------CeEEEEEcCCCCCCcHHHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 154 --------------KHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 154 --------------~~~i~liDTPG~~~f~~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
+..+.|+||-||+.|...+++++- ..|..+++|.|.+|++..|++|+..+...++|+|+|++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 356899999999999999999985 5699999999999999999999999999999999999999
Q ss_pred Cccc-cchhhhHHHHHHHhCC-cceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHH
Q 008294 218 DRLG-ANFFRTRDMIVTNLGA-KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295 (571)
Q Consensus 218 D~~~-~~~~~~~~~i~~~l~~-~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 295 (571)
|+.. .++..+.++|...|.. .-+|+.+ .
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~v--k------------------------------------------------ 295 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIV--K------------------------------------------------ 295 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceee--e------------------------------------------------
Confidence 9965 4477777777766543 0111110 0
Q ss_pred HHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccC-cceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 008294 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAG-SFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPE 374 (571)
Q Consensus 296 ~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~-~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~ 374 (571)
+.+ +...+. .+...+ .++|+|.+|+.+|.|++ +|+.+..++|.-..
T Consensus 296 -----~~~----------------d~v~aa-~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~---------- 342 (527)
T COG5258 296 -----DTD----------------DVVLAA-KAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR---------- 342 (527)
T ss_pred -----ccc----------------hhHHhh-hhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc----------
Confidence 000 111111 122233 48899999999999998 67777777875531
Q ss_pred CccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC----ceeecceEEEeccCceeecCee
Q 008294 375 NPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVA 450 (571)
Q Consensus 375 ~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a 450 (571)
-+..+||.+||.|+++..++|.++.|.|-+|.|+.||.|+..+.. ...+|++|.+- +..|++|
T Consensus 343 ---------~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh----~~rvdsa 409 (527)
T COG5258 343 ---------WDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH----HYRVDSA 409 (527)
T ss_pred ---------cCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe----eEEeccc
Confidence 124789999999999999999999999999999999999986642 34567777543 3789999
Q ss_pred cCCCEEEE--eCCCC--ccccceecCCCCcccc
Q 008294 451 LAGDIIAL--AGLKD--TITGETLCDADHPILL 479 (571)
Q Consensus 451 ~aGdiv~i--~gl~~--~~~Gdtl~~~~~~~~l 479 (571)
.||+|+.+ .|+.. +..|.+|+....|-.+
T Consensus 410 ~aG~iig~Al~gv~~e~lerGMVl~~~~~pkaV 442 (527)
T COG5258 410 KAGSIIGIALKGVEKEELERGMVLSAGADPKAV 442 (527)
T ss_pred cCCcEEEEEecccCHHHHhcceEecCCCCchhh
Confidence 99999877 56654 7899999876445433
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=239.90 Aligned_cols=315 Identities=24% Similarity=0.274 Sum_probs=215.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcce---------------eeeeecCcccccchhhhhhhceeEeeceEEEee
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK---------------IGEVHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~---------------~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
+...++..+|+++-|||||+.+|||.+..+.. .|+..+-....|-.+.|++.||||+..+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 44678999999999999999999988765432 112122234567788999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i 231 (571)
..+++.+.|||||+.|...|..+..-||++|++|||..|+..||++|.-.+...++++++ .+||||+.+.+. +.+++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 599999987542 223333
Q ss_pred HHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh
Q 008294 232 VTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL 311 (571)
Q Consensus 232 ~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l 311 (571)
...+. .+.+
T Consensus 163 ~~dy~--------------------------------------------------------------------~fa~--- 171 (431)
T COG2895 163 VADYL--------------------------------------------------------------------AFAA--- 171 (431)
T ss_pred HHHHH--------------------------------------------------------------------HHHH---
Confidence 22110 0000
Q ss_pred cCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc-ccCCCCCCe
Q 008294 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE-RAASDDEPF 390 (571)
Q Consensus 312 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ 390 (571)
........++| .||+.|.+|-. + ....++|.|...-.-.+..+ .......||
T Consensus 172 --------------~L~~~~~~~IP---iSAl~GDNV~~---------~-s~~mpWY~GptLLe~LE~v~i~~~~~~~~~ 224 (431)
T COG2895 172 --------------QLGLKDVRFIP---ISALLGDNVVS---------K-SENMPWYKGPTLLEILETVEIADDRSAKAF 224 (431)
T ss_pred --------------HcCCCcceEEe---chhccCCcccc---------c-ccCCCcccCccHHHHHhhccccccccccce
Confidence 00111122344 48888877641 1 11122333221000000000 011234567
Q ss_pred EEEEEEEeecCCCceE-EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC--cccc
Q 008294 391 AGLAFKIMSDPFVGSL-TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TITG 467 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i-~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~~G 467 (571)
+..|-.+. .|+..+- -.|+|-+|++++||.|...+.|+..+|++|..+.| ++++|.||+-|.+.=-++ +..|
T Consensus 225 RfPVQ~V~-Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRG 299 (431)
T COG2895 225 RFPVQYVN-RPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRG 299 (431)
T ss_pred eeceEEec-CCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEEcceeecccC
Confidence 66665544 2222222 24789999999999999999999999999998874 578999999999973333 6789
Q ss_pred ceecCCCCcccccCCCCCCceEEEEEEeCCCCCHHHHHHH
Q 008294 468 ETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKMANG 507 (571)
Q Consensus 468 dtl~~~~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~ 507 (571)
|.|+..+.+... .-.|..-++.+.-+|..++.--+|.-+
T Consensus 300 d~i~~~~~~~~~-~~~f~A~vvWm~~~pl~pGr~Y~lK~~ 338 (431)
T COG2895 300 DLIVAADAPPAV-ADAFDADVVWMDEEPLLPGRSYDLKIA 338 (431)
T ss_pred cEEEccCCCcch-hhhcceeEEEecCCCCCCCceEEEEec
Confidence 999988766541 223444566666666655543333333
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=232.25 Aligned_cols=129 Identities=48% Similarity=0.632 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec----------CeEEEEE
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KHRINII 160 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~i~li 160 (571)
|||+++||+++|||||+++|++.+|.+.... ...++++|+.+.|++||+|+.....++.|. ++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 6999999999999999999999888665432 123478999999999999999998887775 7889999
Q ss_pred cCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 161 DTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
|||||.+|..++..+++.+|++++|||+.+|+..+++.+++.+...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999864
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=253.14 Aligned_cols=330 Identities=21% Similarity=0.272 Sum_probs=215.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+.+.|+++||+|||||||+|+|..........| |+|.+.....+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~g------------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAG------------------GITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCC------------------ceecccCeeEeeecccccccccccccccc
Confidence 457899999999999999999974322111111 2232222222111
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
....++|||||||.+|...+.++++.+|++++|+|+.+|+..++.+++..++..++|+++|+||+|+....
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~------- 137 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGW------- 137 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchh-------
Confidence 11248999999999999999999999999999999999999999999999999999999999999986310
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeee--ecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY--EDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
....+ ..|.. ............+....++..+.
T Consensus 138 -~~~~~------------------------------------~~f~e~sak~~~~v~~~~~~~~~~lv~~l~-------- 172 (590)
T TIGR00491 138 -RSHEG------------------------------------RPFMESFSKQEIQVQQNLDTKVYNLVIKLH-------- 172 (590)
T ss_pred -hhccC------------------------------------chHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------
Confidence 00000 00000 00000000011111111111111
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCC
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDE 388 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (571)
...+..+.+. .+. ..+..+|++.+||++|.|+++|+++|....-.-.. .....++++
T Consensus 173 ----~~G~~~e~~~-~i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~---------------~~l~~~~~~ 229 (590)
T TIGR00491 173 ----EEGFEAERFD-RVT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLE---------------EQLKLEEEG 229 (590)
T ss_pred ----hcCccHHhhh-hhh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhh---------------hhhccCCCC
Confidence 1112221111 111 12445789999999999999999998654211000 001224578
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEecc--------CceeecCeec--CCCEE
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHA--------NSREDVKVAL--AGDII 456 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g--------~~~~~v~~a~--aGdiv 456 (571)
|+.+.|...+.+++.|.++.++|.+|+|++||.|...+.+. ..+|+.|+...+ .+...++++. +|--+
T Consensus 230 ~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v 309 (590)
T TIGR00491 230 PARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKI 309 (590)
T ss_pred CeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeE
Confidence 99999999999999999999999999999999999887653 467888876653 1234566755 45556
Q ss_pred EEeCCCCccccceecCCCCcc----------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 457 ALAGLKDTITGETLCDADHPI----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 457 ~i~gl~~~~~Gdtl~~~~~~~----------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
.+.|++++..|+.+.-..+.- ....+.+...-+.+-|.+...+.++.|.++|+++
T Consensus 310 ~~~~l~~~~aG~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~vivkad~~Gs~EAl~~~l~~~ 374 (590)
T TIGR00491 310 AAPGLDDVMAGSPIRVVTDEEIEKVKEEILKEVEEIKIDTDEEGVVVKADTLGSLEALVNELRDM 374 (590)
T ss_pred EecCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhhcccccccccEEEEecCcchHHHHHHHHHhC
Confidence 668998888898874322110 0112223355688999999999999999999986
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=225.99 Aligned_cols=305 Identities=22% Similarity=0.335 Sum_probs=219.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
.-.||+++||+++|||||+.+|. | -+.|.+.+|-+||+|+...+.....
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Als---G------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~ 73 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALS---G------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEP 73 (415)
T ss_pred cceEeeeeeecccchhhheehhh---c------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCC
Confidence 35799999999999999999994 2 3568899999999999988765332
Q ss_pred ----------cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 153 ----------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 153 ----------~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
--+++.|+|+|||+-....+.++....|++++||+|++. .++||++|+..+.-.++..+ +|-||+|+.
T Consensus 74 ~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 74 KCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred CCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 014689999999999999999999999999999999965 58999999999998888765 567999997
Q ss_pred ccc-hhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHH
Q 008294 221 GAN-FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (571)
Q Consensus 221 ~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (571)
..+ ..+-+++|++
T Consensus 154 ~~E~AlE~y~qIk~------------------------------------------------------------------ 167 (415)
T COG5257 154 SRERALENYEQIKE------------------------------------------------------------------ 167 (415)
T ss_pred cHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 643 1222233322
Q ss_pred hhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 008294 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (571)
Q Consensus 300 ~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (571)
|++| .+++ -.|++.+||.++.+++.|+++|.+++|.|..
T Consensus 168 ----------FvkG--------------t~Ae--~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--------------- 206 (415)
T COG5257 168 ----------FVKG--------------TVAE--NAPIIPISAQHKANIDALIEAIEKYIPTPER--------------- 206 (415)
T ss_pred ----------Hhcc--------------cccC--CCceeeehhhhccCHHHHHHHHHHhCCCCcc---------------
Confidence 1111 1111 1378888999999999999999999999975
Q ss_pred ccccCCCCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCC------Cce---eecceEEEeccC
Q 008294 380 LERAASDDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK------GKK---ERIGRLLEMHAN 442 (571)
Q Consensus 380 ~~~~~~~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~------~~~---~~i~~i~~~~g~ 442 (571)
|.+.|..++|.+.|... -.|-+.-|-+.+|.|+.||.+-..+. ++. --...+..++..
T Consensus 207 -----d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag 281 (415)
T COG5257 207 -----DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG 281 (415)
T ss_pred -----CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC
Confidence 45789999999998433 23568889999999999999975432 111 013344455543
Q ss_pred ceeecCeecCCCEEEE-eCCCC-ccccceecCC--CCcccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCee
Q 008294 443 SREDVKVALAGDIIAL-AGLKD-TITGETLCDA--DHPILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSF 518 (571)
Q Consensus 443 ~~~~v~~a~aGdiv~i-~gl~~-~~~Gdtl~~~--~~~~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl 518 (571)
. .++++|.+|-.++| ++||. +.++|-|... +.+- ..|....++.++-. -|.++.-.+-.+
T Consensus 282 ~-~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG-----~lPpv~~~~~ie~~----------LL~RvvG~~~e~ 345 (415)
T COG5257 282 G-EDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPG-----TLPPVWTSIRIEYH----------LLERVVGTKEEL 345 (415)
T ss_pred C-eeeeeccCCceEEEecccCcchhhhhhhccccccCCC-----CCCCceEEEEEEee----------ehhhhhCccccc
Confidence 3 78999999999999 78886 4457766543 2222 22333444445432 244555555556
Q ss_pred EEEEeCCCCeEEEEEecHH
Q 008294 519 HFSRDEEINQTVIEGMGEL 537 (571)
Q Consensus 519 ~~~~~~etge~il~g~Gel 537 (571)
+++- -.++|.++...|..
T Consensus 346 kvep-ik~~E~Lml~VGta 363 (415)
T COG5257 346 KVEP-IKTNEVLMLNVGTA 363 (415)
T ss_pred cccc-ccCCCeEEEEeecc
Confidence 6654 35788888776653
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=223.26 Aligned_cols=128 Identities=30% Similarity=0.444 Sum_probs=114.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..||+++||+|+|||||+++|++... ..|... .+...+|+.++|+++|+|++.....+.+++.+++|+|||||.+|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH
Confidence 36899999999999999999996542 222221 23457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~ 220 (571)
..++..++..+|++++|||+.+|+..++++++..+...++| +++|+||+|+.
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999998 66889999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=204.72 Aligned_cols=129 Identities=40% Similarity=0.569 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----cCeEEEEEcCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDTPGH 165 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~liDTPG~ 165 (571)
|||+++|++|+|||||+++|+...|.+...+. ...+.++.+.++.+|+|+......+.+ .+..++||||||+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM---KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC---ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 69999999999999999999987665443221 135677888899999999887776644 4678999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 999999999999999999999999988888888887777789999999999998653
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=214.37 Aligned_cols=247 Identities=22% Similarity=0.274 Sum_probs=200.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------cCeEEEEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINII 160 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~i~li 160 (571)
..|++++||+++|||||..+|... + .+...|.++...+||+|.+.....+.. ...+++++
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~-------~----STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlv 75 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL-------G----STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLV 75 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh-------c----cchhhccCCcccccceeEeecceeeecccccccCccccceeEEE
Confidence 379999999999999999999521 1 245678888899999999999887765 34567999
Q ss_pred cCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchh-hhHHHHHHHhCCcc
Q 008294 161 DTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFF-RTRDMIVTNLGAKP 239 (571)
Q Consensus 161 DTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~-~~~~~i~~~l~~~~ 239 (571)
|+|||......++.+....|..++|||+..|.+.|+-+++-.........++|+||+|....+.. ..++....
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k------ 149 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK------ 149 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH------
Confidence 99999999999999999999999999999999999999998888888889999999997543211 11111111
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
T Consensus 150 -------------------------------------------------------------------------------- 149 (522)
T KOG0461|consen 150 -------------------------------------------------------------------------------- 149 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcccCcceeeeeccccCC----CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEE
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKN----KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~----~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (571)
.+.+.|... ..+.-.|++.+||..| .++++|.+.|...+-.|.. |+.+||.+.|.
T Consensus 150 k~~KtLe~t-~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R--------------------d~~gpflm~vD 208 (522)
T KOG0461|consen 150 KVRKTLEST-GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR--------------------DEEGPFLMAVD 208 (522)
T ss_pred HHHHHHHhc-CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc--------------------CCCCCeEEEee
Confidence 111222211 1233468999999999 8999999999888766654 46899999999
Q ss_pred EEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE
Q 008294 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (571)
Q Consensus 396 k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i 458 (571)
.-+..++.|++..|.|++|.++.|+.|-.+.-+...||+.+.+++ .+|.+|.+||.+++
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHh----hhhhhhhcccceee
Confidence 999999999999999999999999999988877777888887766 78999999999887
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=215.11 Aligned_cols=130 Identities=32% Similarity=0.403 Sum_probs=114.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceee--eee-----cCc------ccccchhhhhhhceeEeeceEEEeecCeEEE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVH-----EGT------ATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~~~-----~g~------~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~ 158 (571)
||+++||+|+|||||+++|++.+|.+.+.+ .+. .|. +++|+.+.|+++|+|++.....+.++++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 689999999999999999999999876644 211 233 3789999999999999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC-------CCchhHHHHHHHHHhcC-CCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------GVEPQSETVWRQADKYG-VPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~-------g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~~ 221 (571)
+||||||.+|...+..+++.+|++|+|||+.+ +...++.+++..+...+ .|+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999998 56778888888887777 46778999999874
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=238.12 Aligned_cols=317 Identities=20% Similarity=0.215 Sum_probs=214.5
Q ss_pred hHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC------------------eEEEEEcCCC
Q 008294 103 KTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK------------------HRINIIDTPG 164 (571)
Q Consensus 103 KSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------~~i~liDTPG 164 (571)
||||+++|....- ......|+|++.+...+.+.. ..++||||||
T Consensus 474 KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 9999999952111 122346888888887776542 1389999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHhCCcceeee
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
|.+|.....+++..+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+.. ++...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~----------------- 598 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE----------------- 598 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc-----------------
Confidence 999988888888999999999999999999999999999999999999999999853 21000
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
..++-..+....+...+++-+.+.+.-.++.+ ..+..+ +..
T Consensus 599 ---------------------------------~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~-----~G~~~e-~~~ 639 (1049)
T PRK14845 599 ---------------------------------DEPFLLNFNEQDQHALTELEIKLYELIGKLYE-----LGFDAD-RFD 639 (1049)
T ss_pred ---------------------------------chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHh-----cCcchh-hhh
Confidence 00000111111111111111111110011111 111111 111
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~ 403 (571)
.+.. .+..+|++.+||++|.|+++|+++|....+.-.+ .....++++|+.+.|..++.+++.
T Consensus 640 ~~~d---~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~---------------~~L~~~~~~~~~g~VlEv~~~kG~ 701 (1049)
T PRK14845 640 RVQD---FTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE---------------ERLKLNVEGYAKGTILEVKEEKGL 701 (1049)
T ss_pred hhhh---cCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh---------------hhhccCCCCceEEEEEEEEEecCc
Confidence 1111 2456799999999999999999988754332111 011234578999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEec--------cCceeecCeecCCCEEEE--eCCCCccccceec
Q 008294 404 GSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMH--------ANSREDVKVALAGDIIAL--AGLKDTITGETLC 471 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdiv~i--~gl~~~~~Gdtl~ 471 (571)
|.++.+.|++|+|++||.|...+.+. ..+|+.++... +.....+++|.|+.-|-| .|++++..|+.+.
T Consensus 702 G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~ 781 (1049)
T PRK14845 702 GTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIR 781 (1049)
T ss_pred eeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEE
Confidence 99999999999999999999887654 46777776432 223467888888887777 4899999999885
Q ss_pred CCCCcc-----------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 472 DADHPI-----------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 472 ~~~~~~-----------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
-..+.- .+....+....+.+-|.+...+.++.|..+|+++
T Consensus 782 v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~vivKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 782 IVPTKEKIEKAKEEVMKEVEEAKIETDKEGILIKADTLGSLEALANELRKA 832 (1049)
T ss_pred EeCCHHHHHHHHHHHHHHHhhhccCcceeeEEEEecccchHHHHHHHHHhC
Confidence 432210 0111223346688999999999999999999986
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=211.03 Aligned_cols=130 Identities=28% Similarity=0.340 Sum_probs=115.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcc--eeeeee-----------cCcccccchhhhhhhceeEeeceEEEeecCeEEE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNY--KIGEVH-----------EGTATMDWMEQEQERGITITSAATTTYWNKHRIN 158 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~--~~g~~~-----------~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~ 158 (571)
+|+|+||+|+|||||+++|++.+|.+. ..+.++ .+++++|+.+.|+++|+|++.....+.+++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999999998766 223222 4567899999999999999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~ 221 (571)
|||||||.+|...+..+++.+|++|+|+|+.+++..++..++..+...++| +++|+||+|+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 999999999999999999999999999999999999998888888888866 566899999864
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=204.35 Aligned_cols=142 Identities=41% Similarity=0.580 Sum_probs=119.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++|+|+++|++|+|||||+++|++..+.......+ ..+.+++.+.|..+|+|+......+.+++..+++|||||+.+|
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 37899999999999999999999765554433221 2356788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHH
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (571)
...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+....+++++
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999888888887888878899999999999997654444444443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=200.23 Aligned_cols=130 Identities=38% Similarity=0.507 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC-cccccchhhhhhhceeEeeceEEEeec-----CeEEEEEcCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDTPG 164 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g-~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liDTPG 164 (571)
|||+++||+|+|||||+++|++.++.....+....+ +.++|..+.|+++|+|+......+.+. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 689999999999999999999888876544333332 456899999999999999888887654 47899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
|.+|...+..+++.+|++++|+|+.++...+++.+++.+...++|.++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999988888888888887889999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=200.86 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------------- 153 (571)
+||+++||.|+|||||+++|. + ...|+.+.|.++|+|+..+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---G------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---C------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 489999999999999999994 1 22567778888899988887777664
Q ss_pred ----------C------eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCC-CeEEEEe
Q 008294 154 ----------K------HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGV-PRICFVN 215 (571)
Q Consensus 154 ----------~------~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~-p~ivviN 215 (571)
+ ++++|||||||.+|...+..++..+|++++|+|+.++ ...++.+++..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 3 7899999999999999999999999999999999984 67788888888877776 5788999
Q ss_pred cCCccc
Q 008294 216 KMDRLG 221 (571)
Q Consensus 216 K~D~~~ 221 (571)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999865
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=197.58 Aligned_cols=119 Identities=26% Similarity=0.444 Sum_probs=103.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--------------CeEE
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------KHRI 157 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~i 157 (571)
||+++|++|+|||||+++|+... +...++...+|.++|+|+......+.+. ++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 79999999999999999997321 2345677888999999999988877775 7899
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 158 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 158 ~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++||||||.+|......+...+|++++|+|+.++...++.+.+..+...++|+++|+||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999988888889999999999999999888888877777777899999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-24 Score=210.42 Aligned_cols=287 Identities=21% Similarity=0.261 Sum_probs=211.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee------------e-eecCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
+.+...|+.++||+++||||+-+.+++.+|....+. + -..-.+++|++.+|+++|-|+......++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 346788999999999999999999988877654321 0 011136799999999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCeE-EEEecCCccccch
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPRI-CFVNKMDRLGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~ 224 (571)
...+++++|+|||..|..+++.+..+||.+++|+.+..|- ..||+++..+++..++..+ +++||||-+..++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999997432 3599999999999998875 5689999776542
Q ss_pred h-hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcC
Q 008294 225 F-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (571)
Q Consensus 225 ~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 303 (571)
. +-++++.+++
T Consensus 235 s~eRy~E~~~k~-------------------------------------------------------------------- 246 (501)
T KOG0459|consen 235 SNERYEECKEKL-------------------------------------------------------------------- 246 (501)
T ss_pred chhhHHHHHHHH--------------------------------------------------------------------
Confidence 1 1122222111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhh----cccCcceeeeeccccCCCChHHHHHHHHHh--CCCCCCCCCCCCCCCCCcc
Q 008294 304 DEAMESYLEGNEPDEETIKKLIRKG----TIAGSFVPVLCGSAFKNKGVQPLLDAVVDY--LPSPLDLPAMKGTDPENPE 377 (571)
Q Consensus 304 ~~l~e~~l~~~~~~~~~l~~~l~~~----~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~--lP~p~~~~~~~~~~~~~~~ 377 (571)
..-|+.. ...-.+ +.+|.++|.++.+..+.++-+ .|++.+. . +.-
T Consensus 247 ------------------~~fLr~~g~n~~~d~~f---~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~-------l-d~l 297 (501)
T KOG0459|consen 247 ------------------QPFLRKLGFNPKPDKHF---VPVSGLTGANVKDRTDSVCPWYKGPIFLEY-------L-DEL 297 (501)
T ss_pred ------------------HHHHHHhcccCCCCcee---eecccccccchhhcccccCCcccCCcccee-------h-hcc
Confidence 1111100 011123 345889998888766522211 2222210 0 000
Q ss_pred ccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEE
Q 008294 378 ATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA 457 (571)
Q Consensus 378 ~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~ 457 (571)
.. .+-+.++|+++.|..-+.| +|++.+|+|-||+++.|+.+...++++...|..||.- -.+++++.|||.+-
T Consensus 298 ~~--~~R~~~GP~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d----dvE~~~~~pGenvk 369 (501)
T KOG0459|consen 298 PH--LERILNGPIRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD----DVETDRVAPGENVK 369 (501)
T ss_pred Cc--ccccCCCCEEeehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecc----cceeeeccCCcceE
Confidence 00 1123589999999877765 4899999999999999999999999888888887743 37899999999988
Q ss_pred E--eCCC--CccccceecCCCCcc
Q 008294 458 L--AGLK--DTITGETLCDADHPI 477 (571)
Q Consensus 458 i--~gl~--~~~~Gdtl~~~~~~~ 477 (571)
| .|++ ++..|-+||++.+++
T Consensus 370 ~rlkgieeedi~~GfiL~~~~n~~ 393 (501)
T KOG0459|consen 370 LRLKGIEEEDISPGFILCSPNNPC 393 (501)
T ss_pred EEecccchhhccCceEEecCCCcc
Confidence 7 6765 488999999998876
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=197.67 Aligned_cols=141 Identities=20% Similarity=0.195 Sum_probs=111.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEE----------------------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT---------------------- 149 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~---------------------- 149 (571)
+|+++|+.++|||||+++|.. +.... +. ......++.+.+|.++|.|.......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 478999999999999999973 21111 11 01124567788999999987544321
Q ss_pred --EeecCeEEEEEcCCCCCCcHHHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-ch
Q 008294 150 --TYWNKHRINIIDTPGHVDFTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NF 224 (571)
Q Consensus 150 --~~~~~~~i~liDTPG~~~f~~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~ 224 (571)
+...++.++|+|||||.+|...+..++. .+|++++|||+.+|...++++++..+...++|+++|+||+|+... ..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 2335688999999999999999999986 789999999999999999999999999999999999999998654 36
Q ss_pred hhhHHHHHHHhC
Q 008294 225 FRTRDMIVTNLG 236 (571)
Q Consensus 225 ~~~~~~i~~~l~ 236 (571)
.+.++++++.+.
T Consensus 157 ~~~~~~l~~~L~ 168 (224)
T cd04165 157 QETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHhc
Confidence 677777777664
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=184.82 Aligned_cols=142 Identities=45% Similarity=0.680 Sum_probs=115.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+|+|+............. ...++....+..+|+|+......+.+.+..++||||||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE--ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee--cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999986654433222111 144666777888999999888888889999999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHh
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNL 235 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l 235 (571)
+..+++.+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.. .+.....+++++.+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888999999999999975 33444455555444
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=198.48 Aligned_cols=281 Identities=20% Similarity=0.268 Sum_probs=206.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEE-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATT----------------- 149 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~----------------- 149 (571)
.+++++|.+++|||||+..|.+ |+.+.|. .-+..++.|.+.|-|.....--
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 5799999999999999998852 3333332 2233455566666554433222
Q ss_pred --Eee------cCeEEEEEcCCCCCCcHHHHHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 150 --TYW------NKHRINIIDTPGHVDFTLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 150 --~~~------~~~~i~liDTPG~~~f~~~~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
++| .-..|+|||.+||+.|.+.+..++.. .|...++|.++.|+-..|.+++..+...++|+++|++|||.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 222 23569999999999999998888764 49999999999999999999999999999999999999999
Q ss_pred cccc-hhhhHHHHHHHh---CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHH
Q 008294 220 LGAN-FFRTRDMIVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQM 295 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~l---~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 295 (571)
+.++ +++.+.-+.+.+ |+..+|+-+- .-++ +-..+..|
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVr--s~DD-------Vv~~A~NF----------------------------- 327 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVR--SMDD-------VVHAAVNF----------------------------- 327 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEe--cccc-------eEEeeccC-----------------------------
Confidence 9887 455666666555 4444444321 0000 00111111
Q ss_pred HHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 008294 296 IETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375 (571)
Q Consensus 296 ~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~ 375 (571)
...+++|+|.+|..+|.++. ||.++.+.++....
T Consensus 328 ----------------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~----------- 361 (641)
T KOG0463|consen 328 ----------------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ----------- 361 (641)
T ss_pred ----------------------------------ccccccceEEeccccCCChH-HHHHHHhhcCcccc-----------
Confidence 12357899999999999987 88888888865433
Q ss_pred ccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc----eeecceEEEeccCceeecCeec
Q 008294 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK----KERIGRLLEMHANSREDVKVAL 451 (571)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~----~~~i~~i~~~~g~~~~~v~~a~ 451 (571)
.+.+.|...+|.++|..|++|+++-|..++|+++.+|.+...++.. ...|++| .+++.+|..+.
T Consensus 362 --------~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~Vr 429 (641)
T KOG0463|consen 362 --------LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVR 429 (641)
T ss_pred --------cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhh----hhccccceEEe
Confidence 1247889999999999999999999999999999999999876532 2344444 37789999999
Q ss_pred CCCEEEE--eCCC--CccccceecCCCC
Q 008294 452 AGDIIAL--AGLK--DTITGETLCDADH 475 (571)
Q Consensus 452 aGdiv~i--~gl~--~~~~Gdtl~~~~~ 475 (571)
+|+...+ .+++ ++++|.++.++.-
T Consensus 430 cGQtASFALKKIkr~~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 430 CGQTASFALKKIKRKDVRKGMVMVSPKL 457 (641)
T ss_pred ccchhhhHhhhcchhhhhcceEEecCCC
Confidence 9999766 4554 4889999988754
|
|
| >PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-22 Score=159.39 Aligned_cols=75 Identities=49% Similarity=0.826 Sum_probs=70.7
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEec
Q 008294 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHP 558 (571)
Q Consensus 484 ~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~ 558 (571)
||+|+++++|+|.+++|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||++|+++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999873
|
... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=196.32 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
+.|||+|.+|+|||||+|+|+ |......+ ...|+|.+.......|.++.+.+|||+|..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~---g~r~AIV~--------------D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT---GRRIAIVS--------------DTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCeeeEee--------------cCCCCccCCccceeEEcCceEEEEECCCCCcCCc
Confidence 689999999999999999996 43333322 23688999999999999999999999998753
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
..++..++..||++|||||+.+|+++.++++...++..++|+++|+||+|-.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 3457779999999999999999999999999999998889999999999964
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=199.33 Aligned_cols=241 Identities=25% Similarity=0.255 Sum_probs=161.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+.+.++|+||++.|||-|++.+....-+.... .|+|.......+..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea------------------ggitqqIgAt~fp~~ni~e~tk~~~~~~K~ 535 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA------------------GGITQQIGATYFPAENIREKTKELKKDAKK 535 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccc------------------cceeeeccccccchHHHHHHHHHHHhhhhh
Confidence 46789999999999999999996321111111 23444444333322
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
+--.+.+||||||..|.....++...+|.+|+|||..+|+.+||.+.++.++..+.|+||++||+|++
T Consensus 536 ~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL---------- 605 (1064)
T KOG1144|consen 536 RLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL---------- 605 (1064)
T ss_pred hcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh----------
Confidence 22358899999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeee-cccHHHHHH----HHHHHHHHHHHHhhcCHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYE-DIPANLQKM----AQEYRSQMIETIVELDDE 305 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~----~~~~~~~l~e~~~~~~~~ 305 (571)
|||..... ++-+.+... ..++..++-..+.+
T Consensus 606 ----------------------------------------Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~e---- 641 (1064)
T KOG1144|consen 606 ----------------------------------------YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVE---- 641 (1064)
T ss_pred ----------------------------------------cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHH----
Confidence 22222111 111111111 11222222222222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAAS 385 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (571)
+.|+-|+ .+|+ -+-...+.++-++.+||.+|.||.+|+-+|+++...-.. -...
T Consensus 642 faEQgLN------~~Ly---ykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~-----------------~kl~ 695 (1064)
T KOG1144|consen 642 FAEQGLN------AELY---YKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV-----------------EKLA 695 (1064)
T ss_pred HHHcccc------hhhe---eecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH-----------------HHHh
Confidence 2222111 0000 011123556778889999999999999999987422111 0001
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK 427 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~ 427 (571)
....+.+.|..+-..++.|+-.-+-+..|.|+.||.|.+.+.
T Consensus 696 y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 696 YVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred hhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 234577889888888999998888889999999999986543
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=188.18 Aligned_cols=285 Identities=20% Similarity=0.269 Sum_probs=208.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEEEee--------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYW-------------- 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~-------------- 152 (571)
.++|++|..++|||||+..|. .|..++|. .-+..+++|.+.|-|...+.-.+.+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 478999999999999999885 23333332 1234466777777665554433322
Q ss_pred -------cCeEEEEEcCCCCCCcHHHHHHHHHhc--CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 153 -------NKHRINIIDTPGHVDFTLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 153 -------~~~~i~liDTPG~~~f~~~~~~~l~~~--D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
....++|||.+||.+|...+..++..- |.+++||.|..|+...|++|+..+...++|++++++|+|+....
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 246799999999999999998888754 99999999999999999999999999999999999999997643
Q ss_pred -hhhhHHHHHHHh---CCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHH
Q 008294 224 -FFRTRDMIVTNL---GAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETI 299 (571)
Q Consensus 224 -~~~~~~~i~~~l---~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 299 (571)
.+++++++.+.+ |+..+|..+.
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt------------------------------------------------------ 345 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVT------------------------------------------------------ 345 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEee------------------------------------------------------
Confidence 677777777665 4433332221
Q ss_pred hhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccc
Q 008294 300 VELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEAT 379 (571)
Q Consensus 300 ~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 379 (571)
++++...+.++ ...++++|+|++|..+|.|++ |+..+.+.+|+-..+. +.
T Consensus 346 -----------------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~-----------e~ 395 (591)
T KOG1143|consen 346 -----------------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE-----------ER 395 (591)
T ss_pred -----------------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH-----------HH
Confidence 12233333333 456889999999999999998 5666666665543211 10
Q ss_pred ccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC--Cc--eeecceEEEeccCceeecCeecCCCE
Q 008294 380 LERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GK--KERIGRLLEMHANSREDVKVALAGDI 455 (571)
Q Consensus 380 ~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~--~~~i~~i~~~~g~~~~~v~~a~aGdi 455 (571)
.. -...|...+|..+|..|.+|.+.-|.+.+|.++.|+.+.+.+. |. +.++..|. +++.++..+.||+-
T Consensus 396 ~~---L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqa 468 (591)
T KOG1143|consen 396 IQ---LVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQA 468 (591)
T ss_pred HH---HhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccc
Confidence 00 1256778899999999999999999999999999999997654 33 34566654 55688889999999
Q ss_pred EEEe-CCCC---ccccceecCCC
Q 008294 456 IALA-GLKD---TITGETLCDAD 474 (571)
Q Consensus 456 v~i~-gl~~---~~~Gdtl~~~~ 474 (571)
..+. +.-+ ++.|.+|....
T Consensus 469 Aslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 469 ASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeeccCCCccchhcceEEeecC
Confidence 8884 2222 67898887654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=172.78 Aligned_cols=116 Identities=27% Similarity=0.396 Sum_probs=94.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~f~~ 170 (571)
+|+++|++|+|||||+++|. +.. .+..+.+..+++|+......+.+. +..+++|||||+.+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~---~~~------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT---GIE------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh---Ccc------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH
Confidence 79999999999999999996 210 122234455677888777777776 78999999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-CeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~ 222 (571)
.+..+++.+|++++|+|+.++...++.+.+..+...+. |+++|+||+|+...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 88889999999999999998888888877777766676 99999999998653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=167.34 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
.+|+++|.+|+|||||+|+|. |...+.+.+ +|+|+......+.+.+..+.|+||||..++.
T Consensus 1 i~ialvG~PNvGKStLfN~Lt---g~~~~v~n~---------------pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALT---GAKQKVGNW---------------PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHH---TTSEEEEES---------------TTSSSEEEEEEEEETTEEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCceecCC---------------CCCCeeeeeEEEEecCceEEEEECCCcccCCC
Confidence 379999999999999999995 666555553 5778888888899899999999999975541
Q ss_pred ---HH--HHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 ---LE--VERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ---~~--~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+ +..++ ...|++|+|+||++ ..+...+..++.+.++|+++|+||+|+...
T Consensus 63 ~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 63 KSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp SSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred CCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 11 23333 46799999999987 456677788889999999999999997643
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-20 Score=177.88 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=94.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC--
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~-- 167 (571)
.--|+|+|.+|+|||||+|+|+ |....+.+..++ +|......-+..++.++.|+||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~---G~KisIvS~k~Q--------------TTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALV---GQKISIVSPKPQ--------------TTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHh---cCceEeecCCcc--------------hhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4568999999999999999997 655554443333 355555555666789999999999654
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
....+..++..+|+++||||+.+++...++.+++.++..+.|+++++||+|+...
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 3555777889999999999999999999999999999888999999999998654
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=205.34 Aligned_cols=240 Identities=19% Similarity=0.182 Sum_probs=174.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|. |...+.+++ .|+|++.....+.+++..+++|||||+.++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt---g~~~~vgn~---------------pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT---GARQRVGNW---------------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCCccCCC---------------CCceEeeEEEEEEcCceEEEEEECCCccccc
Confidence 3589999999999999999995 443333332 5778888888888899999999999998874
Q ss_pred H--------HH--HHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc-cchhhhHHHHHHHhC
Q 008294 170 L--------EV--ERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG-ANFFRTRDMIVTNLG 236 (571)
Q Consensus 170 ~--------~~--~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~ 236 (571)
. +. ..++ ..+|++++|+|+++.. .....+.++.+.++|+++|+||+|+.. .......+++++.+|
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 2 11 1222 3689999999998743 334566778889999999999999864 344556788899999
Q ss_pred CcceeeeccCCCC-CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHhcCC
Q 008294 237 AKPLVVQLPVGAE-DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL-DDEAMESYLEGN 314 (571)
Q Consensus 237 ~~~~~~~~pi~~~-~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~-~~~l~e~~l~~~ 314 (571)
...+++..+.+.+ +++.+.++..... + .....++|++..+..++.++.+.|.+.+. ++.++.+|+|++
T Consensus 143 ~pVvpiSA~~g~GIdeL~~~I~~~~~~---------~-~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 143 CPVIPLVSTRGRGIEALKLAIDRHQAN---------E-NVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhhhc---------c-CCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 9888888887766 4444443322110 0 11124577778888888888888877655 788999999987
Q ss_pred CCCHH------HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhC
Q 008294 315 EPDEE------TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (571)
Q Consensus 315 ~~~~~------~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~l 359 (571)
..+.+ ++.+.+++........|.+++++.+..+++.+++.+....
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 65554 4445555555555556888899999999999999988643
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=165.51 Aligned_cols=114 Identities=32% Similarity=0.355 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGHVD 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG~~~ 167 (571)
++|+++|++|+|||||+++|...... . ....++|.......+.+. +..+++|||||+.+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~--~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA--A----------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc--c----------------ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 46999999999999999999722110 0 012345655555555553 78899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|...+..++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 9888888999999999999999988888888888888899999999999998644
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=172.18 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=79.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f--- 168 (571)
.|+++|++|+|||||+|+|+ |......+.. .++|..........++.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~---~~~~~~vs~~--------------~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH---GQKISITSPK--------------AQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh---CCcEeecCCC--------------CCcccCcEEEEEEcCCcEEEEEECcCCCCCcch
Confidence 58999999999999999997 3221111111 233433322333446678999999998653
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
...+..++..+|++++|+|++++.... ..++..+...+.|+++|+||+|+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223456788999999999999865544 556677777899999999999985
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=176.57 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=86.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|++|+|||||+|+|+ |......+ ...++|.......+.+++.+++||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~---~~k~~ivs--------------~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRII---GEKLSIVT--------------PKVQTTRSIITGIITLKDTQVILYDTPGIFE 112 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHh---CCceeecc--------------CCCCCccCcEEEEEEeCCeEEEEEECCCcCC
Confidence 345789999999999999999997 21111111 1123444444445667888999999999854
Q ss_pred c--------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f--------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. ......++..+|++++|+|+.+++...+..++..++..+.|.++|+||+|+..
T Consensus 113 ~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 113 PKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred CcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 2 22234467899999999999988887777777777778889999999999853
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=176.21 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=101.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
....|||+|.||+|||||+|+|+ |..+...+. ..|+|+++....+++++..+.+|||+|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il---geeR~Iv~~--------------~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL---GEERVIVSD--------------IAGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc---cCceEEecC--------------CCCccccceeeeEEECCeEEEEEECCCCCcc
Confidence 56899999999999999999997 444333332 357799999999999999999999999654
Q ss_pred ---------c-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ---------F-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ---------f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
| ...+..++..+|.+++|+||.+|+..|+..+...+.+.+.++++|+||.|+...
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 2 344788999999999999999999999999999999999999999999998653
|
|
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=143.27 Aligned_cols=84 Identities=31% Similarity=0.414 Sum_probs=80.1
Q ss_pred CCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCcccc
Q 008294 388 EPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG 467 (571)
Q Consensus 388 ~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~G 467 (571)
+||+++|||+.+|++.|+++|+|||+|+|+.||.|++.. ++.+++++|+.++|.++.++++|.||||+++.|++++.+|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcCc
Confidence 789999999999999999999999999999999999877 6678999999999999999999999999999999999999
Q ss_pred ceecC
Q 008294 468 ETLCD 472 (571)
Q Consensus 468 dtl~~ 472 (571)
|||++
T Consensus 81 dtl~~ 85 (85)
T cd03690 81 DVLGD 85 (85)
T ss_pred cccCC
Confidence 99963
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=158.97 Aligned_cols=116 Identities=20% Similarity=0.172 Sum_probs=81.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
||+++|+.|+|||||+++|....+.. .+... .....|+......+.+++..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLPP-------SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCcc-------cccCCccccceEEEEECCEEEEEEECCCChhhHHH
Confidence 58999999999999999997432210 00000 01122444444556677899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+...++.+|++++|+|+.+.-... ....+..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 899999999999999997642211 122222222 24799999999999854
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=155.69 Aligned_cols=112 Identities=25% Similarity=0.293 Sum_probs=87.2
Q ss_pred EEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH---
Q 008294 94 GIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL--- 170 (571)
Q Consensus 94 ~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~--- 170 (571)
+++|++|+|||||+++|+.. ..... +...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~---~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR---RDAIV--------------EDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC---cEEee--------------cCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHH
Confidence 58999999999999999721 10000 11234565555666677889999999999998644
Q ss_pred -----HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 171 -----EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 -----~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.....++.+|++++|+|+.++.......+++.++..++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 4566788999999999999888777778888888889999999999998653
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=178.79 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=93.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+|+|+.... ... ....|+|.......+.+++..+.+|||||+.+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~---~~~--------------~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER---VIV--------------SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe---eec--------------CCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 3457899999999999999999972211 111 11346677777677777888999999999865
Q ss_pred cH-----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 FT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+. .....+++.+|++|+|+|+.++...++..++..+...++|+++|+||+|+.
T Consensus 233 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 233 KGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred cccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 42 123557899999999999999999999999999999999999999999986
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=178.26 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=94.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+|+|+.... ... ....|+|.......+.+++..+.+|||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~---~~~--------------~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER---VIV--------------SDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc---eee--------------cCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 3468999999999999999999973211 111 11357788777777778889999999999754
Q ss_pred cH-----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. .....+++.+|++|+|+|+.++...++..++..+...++|+++|+||+|+..
T Consensus 234 ~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 234 KGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred CcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 21 2345688899999999999999999999999999999999999999999863
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=156.03 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=78.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..++|+++|++|+|||||+++|... .. .. + +...| .....+.+++..+++|||||+..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~---~~---------~---~~t~g----~~~~~~~~~~~~l~l~D~~G~~~~ 71 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DI---DT---------I---SPTLG----FQIKTLEYEGYKLNIWDVGGQKTL 71 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CC---CC---------c---CCccc----cceEEEEECCEEEEEEECCCCHHH
Confidence 4568999999999999999999621 00 00 0 01112 122234456789999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHH----HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
...+...++.+|++++|+|+.+...... ...+..+ ...++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 8888889999999999999987532211 1112222 225789999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=152.86 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=77.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|..... ...... ...|.+ ...+.+.+..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~---~~~~~~------------~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA---QSQIIV------------PTVGFN----VESFEKGNLSFTAFDMSGQGKYRGL 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC---Ccceec------------Cccccc----eEEEEECCEEEEEEECCCCHhhHHH
Confidence 588999999999999999962110 000000 011222 2234567889999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHH------HhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQA------DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~------~~~~~p~ivviNK~D~~~~ 222 (571)
+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+..+
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999987543211 1112222 1247999999999998653
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-18 Score=138.93 Aligned_cols=83 Identities=51% Similarity=0.773 Sum_probs=79.4
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
|+++|||+.+|++.|+++++|||+|+|++||.|++...++.+++++|+.++|.++.++++|.||||+++.|++++.+|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ecC
Q 008294 470 LCD 472 (571)
Q Consensus 470 l~~ 472 (571)
||.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 973
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=152.37 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=86.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.++|+++|++|+|||||+++|+.... ... ...++.+.......+..++..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER---VIV--------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc---eec--------------cCCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 46899999999999999999973211 000 1123445555445566677889999999986541
Q ss_pred -----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 -----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 -----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.....+++.+|++++|+|+.++...+....+..+...+.|+++++||+|+...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 12345678899999999999988888877788888889999999999998654
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=179.01 Aligned_cols=117 Identities=25% Similarity=0.354 Sum_probs=94.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+|+|.+|+|||||+|+|+.... . ..+...|+|.+.....+.+.+..++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~---~--------------~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE---A--------------VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCc---c--------------cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 4568999999999999999999972111 0 0112356777777777788899999999999863
Q ss_pred --------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 --------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 --------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+..+++.+|++|+|+|+.++.......++..++..++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 344566788999999999999999888788888888889999999999999753
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=153.72 Aligned_cols=115 Identities=22% Similarity=0.233 Sum_probs=80.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~ 166 (571)
..++|+++|+.|+|||||+++|+. +..... .....|... ....+.+++ ..++||||||+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~~--------------~~~t~~~~~--~~~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSER--------------QGNTIGVDF--TMKTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCccc--------------CCCccceEE--EEEEEEECCEEEEEEEEECCChH
Confidence 357999999999999999999962 211100 001112222 223344444 578999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9988888999999999999999876544443333 2222 24789999999999854
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=151.66 Aligned_cols=110 Identities=22% Similarity=0.174 Sum_probs=76.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|.... .. ++. .|+......+.+.+..+++|||||+.+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~------------~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV------------TTI-------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc------------CcC-------CccCcCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 47899999999999999995211 00 000 0211222334557789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
+..+++.+|++|+|+|+.+..... ..+.+ ..+.. .++|+++|+||+|+..+
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 888999999999999998643221 12222 22222 37899999999998643
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=152.41 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|+.|+|||||+++|.. +... .+. ...|.++ ..+...+..+++|||||+.+|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~--~~~~------------~~~---~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKL--GQSV------------TTI---PTVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHcc--CCCc------------ccc---CCcccce----EEEEECCEEEEEEECCCCHHHH
Confidence 46899999999999999999962 1110 000 0112222 2334467899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH-H---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA-D---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~-~---~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|+++..... ....+... . ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 88888899999999999998743221 12223222 2 13689999999999754
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=163.59 Aligned_cols=114 Identities=20% Similarity=0.247 Sum_probs=82.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
...|+++|++|+|||||+|+|+ |......+..+ ++|.......+..++.++.+|||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~---g~~~~~vs~~~--------------~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALV---GQKISIVSPKP--------------QTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHh---CCceeecCCCC--------------CcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 4579999999999999999997 32211111111 12222222223335689999999998663
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
...+..++..+|++++|+|+.++.......++..+...++|+++|+||+|+.
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 2345567788999999999998777777778888877789999999999986
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=150.72 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=79.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++++........ ....+.++......+......+++|||||+..|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ----------------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc----------------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 6899999999999999999732110000 001122222222333334567899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc--CCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (571)
...+++.+|++|+|+|+++....+....| ..+++. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999999999999876555444433 334433 79999999999973
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-17 Score=151.85 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|.. +..... ..|+......+.+++..+.+|||||+..|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~--~~~~~~-------------------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL--GEVVHT-------------------SPTIGSNVEEIVYKNIRFLMWDIGGQESLR 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCCCc-------------------CCccccceEEEEECCeEEEEEECCCCHHHH
Confidence 46899999999999999999962 211100 012222334455678899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchh--HHHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQ--SETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~--~~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
..+..+++.+|++++|+|+++..... ..++...+.. .++|+++++||+|+..
T Consensus 74 ~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 88889999999999999998753222 1222233322 3689999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=177.30 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=92.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC----
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---- 167 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~---- 167 (571)
+|+++|++|+|||||+|+|+... ... .+...|+|.+.....+.|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~---~~~--------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR---DAI--------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC---cce--------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh
Confidence 48999999999999999997211 111 111246777777788888999999999999743
Q ss_pred ----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+..+++.+|++++|+|+.++....+.+++..+++.++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 445577788999999999999999999999999999999999999999999754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=136.36 Aligned_cols=81 Identities=33% Similarity=0.514 Sum_probs=77.7
Q ss_pred EEEEEEee---cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccc
Q 008294 392 GLAFKIMS---DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGE 468 (571)
Q Consensus 392 ~~V~k~~~---d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gd 468 (571)
++|||+.+ ||+.|+++|+|||+|+|++||.|++...++.+++++|+.++|.+..++++|.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 999999999999999999999999988887899999999999999999999999999999999999999
Q ss_pred eecC
Q 008294 469 TLCD 472 (571)
Q Consensus 469 tl~~ 472 (571)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=176.32 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...++|+++|++|+|||||+|+|+... .... ....|+|.+.....+.+++..+.||||||+.+
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~---~~~~--------------s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEE---RSVV--------------DDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC---cccc--------------cCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 356899999999999999999997211 1111 11245566666666777888999999999632
Q ss_pred ---------cHHH--HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ---------f~~~--~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+... ...+++.+|++|+|+|++++...+....+..+...++|+++|+||+|+..
T Consensus 272 ~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 2111 23467899999999999999999998888888889999999999999864
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-17 Score=148.92 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++......... .+ .+... .....+......+++|||||+.+|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYD-----PT-----------IEDSY-TKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccC-----CC-----------ccceE-EEEEEECCEEEEEEEEECCCCcchhH
Confidence 589999999999999999998432110000 00 00000 11111222335789999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.+...++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 899999999999999999875433322222 222 234789999999999754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=150.13 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
|+|+++|++|+|||||+++|..... ... ...+.|.......+.+++..++||||||+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~---~~~---------------~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP---EVA---------------PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC---ccC---------------CCCCcccceeEEEEccCceEEEEEECCCcCCccc
Confidence 5899999999999999999972211 000 012334444444455567899999999985311
Q ss_pred -------HHHHHHH-HhcCeEEEEEeCCCCCc---hhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 170 -------LEVERAL-RVLDGAICLFDSVAGVE---PQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 170 -------~~~~~~l-~~~D~~ilVvda~~g~~---~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
.....++ ..+|++++|+|+.+... ......+..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 1122222 33689999999986432 1222344455444 799999999999854
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-17 Score=149.18 Aligned_cols=110 Identities=23% Similarity=0.193 Sum_probs=77.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++++.... . . ...|.......+.+....+.+|||||+..|...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~---~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V---T----------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C---C----------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHH
Confidence 489999999999999999972210 0 0 001222223345556789999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++|+|+....... ....+... ...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 60 WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 888899999999999998752211 22222222 2357899999999998653
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=149.25 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=74.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCe-EEEEEcCCCCCC---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPGHVD--- 167 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~liDTPG~~~--- 167 (571)
+|+++|++|+|||||+++|. +.....+. ..+.|.......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~---~~~~~v~~---------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS---NAKPKIAD---------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh---cCCccccC---------------CCccccCCcceEEEcCCCCeEEEEecCcccCccc
Confidence 68999999999999999996 21111111 012233333344455565 899999999743
Q ss_pred ----cHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHH-HHHHh-----cCCCeEEEEecCCccc
Q 008294 168 ----FTLEVERALRVLDGAICLFDSVAG-VEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ----f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
+...+.+.+..+|++++|+|+.+. -..+....| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 344455667779999999999876 233333333 33332 3689999999999754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=148.47 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=79.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+......... ...|.........+......+++|||||+.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQ----------------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----------------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 78999999999999999997322110000 00122222222333333467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 88899999999999999986555444444 222 234789999999999753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=148.05 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=75.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||++++.. +... .+.+ ..|.. ...+......+.+|||||+..|...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~~------------~~~p---t~g~~----~~~~~~~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEIV------------TTIP---TIGFN----VETVEYKNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCc------------ccCC---CCCcc----eEEEEECCEEEEEEECCCCHhHHHH
Confidence 689999999999999999962 2111 0000 01221 1234456788999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHHh----cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+..+++.+|++|+|+|+++.... +..+.+..+.. .+.|+++++||+|+..
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 88899999999999999863221 12222333221 3589999999999854
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=149.80 Aligned_cols=111 Identities=18% Similarity=0.119 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||++++.. +... ++. .|+......+.+.+..+.+|||||+..|.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~~------------~~~-------~t~~~~~~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GESV------------TTI-------PTIGFNVETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCC------------CcC-------CccccceEEEEECCEEEEEEECCCChhhH
Confidence 46899999999999999999962 2110 000 01112222344577899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
..+...++.+|++|+|+|+++.... ...+.+..+.. .++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 8888899999999999999864221 22233333321 3689999999999864
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=151.81 Aligned_cols=113 Identities=18% Similarity=0.078 Sum_probs=79.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|+|||||+++|... .... .. .|.......+.+++..+.+|||||+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~~~~---~~----------------~t~~~~~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--RLAQ---HQ----------------PTQHPTSEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--CCcc---cC----------------CccccceEEEEECCEEEEEEECCCCHH
Confidence 34478999999999999999999621 1100 00 012222234455788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+...+..++..+|++++|+|+++..... ....+..+. ..++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 8888889999999999999998642211 122222222 25799999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-17 Score=134.36 Aligned_cols=83 Identities=65% Similarity=1.034 Sum_probs=79.4
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
++++|||+.+|++.|+++++|||+|+|++||.|++...++.+++.+|+.++|.++.+++++.||||+++.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 57899999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecC
Q 008294 470 LCD 472 (571)
Q Consensus 470 l~~ 472 (571)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 973
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=149.53 Aligned_cols=109 Identities=17% Similarity=0.052 Sum_probs=76.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|... ... .+ ..|+......+.+.+..+++|||||+.++...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~------------~~-------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFM------------QP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCC------------Cc-------CCcCceeEEEEEECCEEEEEEECCCChhcchH
Confidence 4789999999999999999621 100 00 11222222345567889999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+...++.+|++++|+|+++...... ...+..+. ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 8899999999999999986422211 12222222 12489999999999853
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-17 Score=152.78 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=78.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|+.|+|||||+++|.. +.. . .. ..|.......+.+++..+.+|||||+.++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~--~~~-~--~~----------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD--DRL-A--QH----------------VPTLHPTSEELTIGNIKFKTFDLGGHEQA 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc--CCC-c--cc----------------CCccCcceEEEEECCEEEEEEECCCCHHH
Confidence 457889999999999999999962 111 0 00 01222233445567889999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++++|+|+.+..... ....+..+ ...+.|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 888888899999999999998642211 12222222 235699999999999864
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-17 Score=147.99 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=78.7
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH---
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE--- 171 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~--- 171 (571)
++|++|+|||||++++. +.....+ ...|+|+......+.+++..+++|||||+.++...
T Consensus 1 l~G~~~~GKssl~~~~~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GARQKVG---------------NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHh---cCccccc---------------CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh
Confidence 58999999999999996 2211111 12466777766777788889999999999886532
Q ss_pred ---HHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 172 ---VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ---~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....+. .+|++++|+|+... ......+..+...++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 334443 89999999999863 2333445566778999999999999864
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-17 Score=149.21 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC----
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~---- 166 (571)
++|+++|++|+|||||+|+|. |.... ... ...+.+... .+|||||+.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~---~~~~~----------------------~~~--~~~v~~~~~--~~iDtpG~~~~~~ 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ---GNYTL----------------------ARK--TQAVEFNDK--GDIDTPGEYFSHP 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCcc----------------------Ccc--ceEEEECCC--CcccCCccccCCH
Confidence 479999999999999999985 21100 000 111122222 379999973
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++..++..+++.+|++++|+|++++........+.. ..++|+++++||+|+...
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 456666777899999999999998765444333322 346899999999998543
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=148.30 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|+.... .. .+.+ ..|++..............+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~--~~-----------~~~~---t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TS-----------AFVS---TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC-----------CCCC---ceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 4799999999999999999973211 00 0000 012222222222222346799999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+.........| ..+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 889999999999999999864333322222 23322 3678999999999854
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=147.18 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=74.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+........ ..+. + +.......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~-----~~t~-----------~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY-----DPTI-----------E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc-----CCch-----------h-hhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 6899999999999999999732211000 0000 0 000111112223467889999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HH----HHhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQ----ADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~----~~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|+.+.........| .. ....++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88999999999999999874333222222 12 2224789999999999754
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=148.88 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||++++.. +.... + ....|.. ...+..++..+++|||||+..|.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~~~------------~---~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEIVT------------T---IPTIGFN----VETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCcc------------c---cCCccee----EEEEEECCEEEEEEECCCCHHHH
Confidence 46899999999999999999962 11100 0 0111222 22345678899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHH-Hh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQA-DK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 222 (571)
..+...++.+|++|+|+|+++...... ...+..+ .. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 888889999999999999986432221 1122222 11 36899999999998653
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=146.34 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=77.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~~~f~ 169 (571)
+|+++|.+|+|||||+++|...... . ++. ...|.........+. .....++||||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--~-----------~~~---~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--K-----------DYK---KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCC---CcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 6899999999999999999732110 0 000 001111111112222 235689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+.........|..... .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 888999999999999999987544444444432222 3799999999999754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=179.94 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=96.8
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
......++|+|+|++|+|||||+|+|+ +..... .+...|+|.+.......|++..+++|||||
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~---~~~~~i--------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~G 332 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRIL---GRREAV--------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 332 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHh---CCCcee--------------ecCCCCeeEEEEEEEEEECCEEEEEEeCCC
Confidence 344556899999999999999999997 211111 112357788777777788899999999999
Q ss_pred CCC--------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 165 HVD--------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~--------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+.. +...+..+++.+|++|+|+|+.+++......++..++..++|+++|+||+|+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 333 WEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred cCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 764 45566778999999999999999998888888888999999999999999974
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=152.19 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=75.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
+..+|+++|.+|+|||||+|+|. +.... ....+|+|..... +.++ .+++|||||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~---~~~~~---------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELT---GKKVR---------------VGKRPGVTRKPNH--YDWG--DFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCc---------------cCCCCceeeCceE--Eeec--ceEEEeCCccccc
Confidence 45789999999999999999996 21111 1112355655433 2233 689999999633
Q ss_pred ----------cHHHHHH----HHHhcCeEEEEEeCCCC-----------CchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ----------FTLEVER----ALRVLDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ----------f~~~~~~----~l~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|...+.. ++..+|++++|+|+... ....+.+++..+...++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 2222222 33456899999999642 1234566677777789999999999998654
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=146.14 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++....... +. ...|++.......+......+.+|||||+.+|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-------------~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-------------YI---STIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-------------CC---CccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 36899999999999999999972211000 00 001222222222222234678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 8888899999999999999874333322222 22222 3689999999999754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=147.35 Aligned_cols=113 Identities=24% Similarity=0.232 Sum_probs=76.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++.... ... + ....|+.+.............+.+|||||+.+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~~-----------~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--EKK-----------Y---VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC-----------C---CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 689999999999999999973211 000 0 001122222211222234578999999999998777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc--CCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (571)
....++.+|++|+|+|.++....+....| ..+... ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 77888999999999999876555444333 222222 79999999999985
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=149.28 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE-eecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT-YWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~-~~~~~~i~liDTPG~~~f~ 169 (571)
.+|+++|+.|+|||||++++++.... ... ...|.+........ .+.+..+++|||||+..|.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~----~~~-------------~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV----NTV-------------PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC----CcC-------------CccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 46999999999999999999732211 000 00122221111111 2246789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-----HHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..+...++.+|++++|+|+.+....... +++......++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 8888889999999999999875322221 122223345799999999999753
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=144.72 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++....... ...+ . + ........+......+.||||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-----~~~t-~----------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-----YDPT-I----------E-DSYRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-----cCCc-h----------h-hhEEEEEEECCEEEEEEEEECCCccccch
Confidence 4799999999999999999973211100 0000 0 0 00011122222345688999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh----cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+......... +..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 88889999999999999986433332222 223322 3689999999999753
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=144.97 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=101.8
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
.++|.+..+.||++|.+|+|||||+|+|+...+ ..+. ...+|.|.......+.. .+.|+|.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArt---------------SktPGrTq~iNff~~~~---~~~lVDl 77 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN-LART---------------SKTPGRTQLINFFEVDD---ELRLVDL 77 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc-eeec---------------CCCCCccceeEEEEecC---cEEEEeC
Confidence 456777889999999999999999999972211 1111 12357788777665532 3899999
Q ss_pred CCCCC----------cHHHHHHHHH---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhH
Q 008294 163 PGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTR 228 (571)
Q Consensus 163 PG~~~----------f~~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~ 228 (571)
||+.= +...+..++. ...++++++|+.+++...+++.++.+...++|+++++||+|+... ...+.+
T Consensus 78 PGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l 157 (200)
T COG0218 78 PGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQL 157 (200)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHH
Confidence 99752 2333444443 358899999999999999999999999999999999999999874 355566
Q ss_pred HHHHHHhCC
Q 008294 229 DMIVTNLGA 237 (571)
Q Consensus 229 ~~i~~~l~~ 237 (571)
..+++.++.
T Consensus 158 ~~v~~~l~~ 166 (200)
T COG0218 158 NKVAEELKK 166 (200)
T ss_pred HHHHHHhcC
Confidence 666665544
|
|
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=144.70 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|++|+|||||+++|+...-. .. .....|.+.......+......+.+|||||+.+|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~ 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS--EN--------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 47999999999999999999732110 00 011123233333334444557789999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|+.+....... ..+..+.. .++|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 888889999999999999864332222 22233333 3588999999999753
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=141.44 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+|+|+ +........ ..+.+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~---~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV---GQKISIVSP--------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCceEeccC--------------CCCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 4679999999999999999996 221111110 01112222222334456889999999987643
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 --------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
......+..+|++++|+|+.+..........+.+...+.|.++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 234556888999999999998766666667777777789999999999986
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=148.87 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=76.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||++++.. +... .+ .. |+......+...+..+++|||||+..+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~~------------~~---~~----T~~~~~~~~~~~~~~~~l~D~~G~~~~~ 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEVV------------TT---IP----TIGFNVETVEYKNLKFTMWDVGGQDKLR 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcc------------cc---CC----ccccceEEEEECCEEEEEEECCCCHhHH
Confidence 46799999999999999999951 2111 00 00 1111222344577899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHH-Hh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQA-DK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~-~~---~~~p~ivviNK~D~~~ 221 (571)
..+..+++.+|++|+|+|+++.-.. .....+... .. .++|+++|+||.|+..
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 8888999999999999999753211 112222222 22 3689999999999864
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=150.94 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=76.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~~ 170 (571)
+|+++|.+|+|||||+++|+.... .. .+ ....|.......+.+. .....+.||||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~--~~-----------~~---~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF--SQ-----------HY---KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC-----------CC---CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 689999999999999999973211 00 00 0001112222222222 2356789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH-------hcCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD-------KYGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~-------~~~~p~ivviNK~D~~ 220 (571)
.....++.+|++|+|+|.++.........|. .+. ..++|+++|+||+|+.
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 8889999999999999998754443333332 111 2468999999999985
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=145.76 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||++++..... .. . + ....|++.......+......+.+|||||+.+|.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--~~--~---------~---~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--NP--S---------F---ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--Cc--c---------c---ccCccceEEEEEEEECCEEEEEEEEeCCchHHHH
Confidence 57899999999999999999973211 00 0 0 0011222222222222233678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+.+.........|. .+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 88888899999999999998754433333332 2222 4689999999999864
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=142.99 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++|+..... . . ...+ .+.+. .....+......+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~--~-~~~t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--D--E-YDPT-----------IEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--C--C-cCCc-----------chheE-EEEEEECCEEEEEEEEECCCCcchHH
Confidence 36899999999999999999832110 0 0 0000 01011 11112222235688999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++++|+|..+......... +..+. ..++|+++|+||+|+..
T Consensus 65 l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 65 MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999986433222222 22222 34789999999999754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-17 Score=130.99 Aligned_cols=81 Identities=46% Similarity=0.792 Sum_probs=77.0
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccce
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGET 469 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdt 469 (571)
|+++|||+.+|++ |+++++|||+|+|++||.|++...++.+++.+|+.+.|.++.+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5799999999998 99999999999999999999998888899999999999999999999999999999998 999999
Q ss_pred ecC
Q 008294 470 LCD 472 (571)
Q Consensus 470 l~~ 472 (571)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 973
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=168.18 Aligned_cols=113 Identities=26% Similarity=0.329 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~--- 167 (571)
++|+++|++|+|||||+|+|+ +...... ....|+|.+.....+.+++..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~---~~~~~~v--------------~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT---GKRDAIV--------------ADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCceee--------------CCCCCCcccceEEEEEECCcEEEEEECCCCCCcch
Confidence 579999999999999999996 2111110 11246677766777788889999999999987
Q ss_pred -----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 -----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+...+..++..+|++|+|+|+.++....+.++...++..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 33445678899999999999999988888888888888999999999999964
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=145.36 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=76.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+........ ....|.+.......+......+++|||||+.+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY----------------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 6899999999999999999732110000 000122222222333334578999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--------cCCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--------YGVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--------~~~p~ivviNK~D~~ 220 (571)
....++.+|++|+|+|.++.........| ..+.. .+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 88889999999999999875433333223 22221 458999999999975
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=145.90 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|+.|+|||||++++... ..... .+ ...|.++......+......+.+|||||+..|.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~--~~~~~---~~-----------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK--KFMAD---CP-----------HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--CCCCC---CC-----------cccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 358999999999999999999722 11100 00 001222222222233334678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|.++....+....|. ... ..+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88889999999999999998754444443332 222 24678999999999854
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-16 Score=143.72 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++. +..... ...+ .+.+.. ....+......+++|||||+..|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~--~~~~~~---~~~t-----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ--GIFVEK---YDPT-----------IEDSYR-KQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh--CCCCcc---cCCc-----------chheEE-EEEEECCEEEEEEEEECCCcccchh
Confidence 3789999999999999999972 211110 0000 010111 1112222346678999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+........ .+..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 9999999999999999987644333222 222222 24789999999999754
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=147.51 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+..++|+++|++|+|||||+++|.. +.... + ....+........+.+.+ ..+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~------~----------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP------G----------QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC------C----------CCCceeeEEEEEEEEECCEEEEEEEEECCCc
Confidence 4568999999999999999999962 11100 0 001112222223334444 56889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+|.......++.+|++++|+|+.++........| ..+...++|.++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999889999999999999999875443333333 222334789999999999753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=149.79 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=78.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
.|+++|..|+|||||+.++.+.... . ++. ...|.......+.+......+++|||+|+.+|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~-----------~~~---~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--E-----------ACK---SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--C-----------cCC---CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 5889999999999999999732111 0 000 00122222222222223478899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~---~~~~p~ivviNK~D~~~ 221 (571)
+..+++.+|++|+|+|.++....+....|.. +. ..++|+++|.||+|+..
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 9999999999999999998655555444432 22 23689999999999753
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=179.21 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=90.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...++|+++|++|+|||||+|+|+... ..... ...|+|.+.....+.+++..+.||||||+.+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~---~~~v~--------------~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEE---RAVVN--------------DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc---ccccC--------------CCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 346899999999999999999997221 11111 1245566666666777888999999999742
Q ss_pred ---------cHHH--HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ---------FTLE--VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ---------f~~~--~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+... ...+++.+|++++|+|++++...++...+..+...++|+++|+||+|+..
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 2111 24457889999999999999999999999888888999999999999864
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=145.60 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=80.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++.... ..... ...|.+..............+++|||||+.+|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~--~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHD--------------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCCCC--------------CccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 46899999999999999999972211 00000 012333333333333344689999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+++....+....|. .++. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 68 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 88888999999999999998654444443333 2333 3689999999999753
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=148.89 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++..... . .+.+ ..|.+. .....+......+++|||||+.+|.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~-----------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--D-----------EYDP---TIEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c-----------CcCC---chhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 468999999999999999999732110 0 0000 001111 1112233344678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
..+..+++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999875443332222 2222 23789999999999753
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=145.64 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=75.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+........ ....+.+.......+......+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc----------------CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 6899999999999999999732110000 000111221111222223356789999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHH--HHh------cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQ--ADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~--~~~------~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+.+.........|.. +.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 8899999999999999987543332222321 111 2789999999999863
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=143.45 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=78.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|++|+|||||+++|+...... +...+.+.+.....+.+++ ..+++|||||+..+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 78999999999999999997221110 0112233333333333433 568999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH-Hhc--CCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA-DKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~-~~~--~~p~ivviNK~D~~ 220 (571)
......++.+|++++|+|+.+.........| ..+ ... ++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 64 SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 8888899999999999999875444443333 222 233 48999999999974
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=144.27 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=77.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+....... .....+.+.......+......+.+|||||+..|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD----------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc----------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 689999999999999999972211100 0111233333332333334467999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~ 220 (571)
....++.+|++++|+|+.+....+....| ..+ ...++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 88889999999999999865444433333 222 23578999999999986
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-16 Score=144.12 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=77.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|++|+|||||+++|+.... .. ...+.++.......+.+++ ..+++|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE----------------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 689999999999999999972211 00 0001122222222333333 678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 88899999999999999998755444433342 2222 4689999999999753
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-17 Score=156.17 Aligned_cols=247 Identities=20% Similarity=0.335 Sum_probs=174.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
-..||+.+||+.+||||++.++. |.- . -..+.|-+|.+|+...+.....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiS---Gv~----T--------vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAIS---GVH----T--------VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred eeeeecceeccccCcceeeeeec---cce----E--------EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 36799999999999999999983 321 1 1234566788888777654322
Q ss_pred -----------------c----CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCCe
Q 008294 153 -----------------N----KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-VEPQSETVWRQADKYGVPR 210 (571)
Q Consensus 153 -----------------~----~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~p~ 210 (571)
+ -+.+.|+|+|||+-....+..+....|++++++.+++. .++||-+|+....-+++..
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 0 13578999999999999999999999999999998864 5799999998888888777
Q ss_pred EEE-EecCCccccch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHH
Q 008294 211 ICF-VNKMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMA 288 (571)
Q Consensus 211 ivv-iNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 288 (571)
+++ -||+|+...+. .+-.++|+
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~-------------------------------------------------------- 205 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQ-------------------------------------------------------- 205 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHH--------------------------------------------------------
Confidence 654 69999875431 11122222
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCC
Q 008294 289 QEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAM 368 (571)
Q Consensus 289 ~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~ 368 (571)
+|+.| ...+ -.|++.+||--+.+++.+.++|++.+|-|..
T Consensus 206 --------------------kFi~~--------------t~ae--~aPiiPisAQlkyNId~v~eyivkkIPvPvR---- 245 (466)
T KOG0466|consen 206 --------------------KFIQG--------------TVAE--GAPIIPISAQLKYNIDVVCEYIVKKIPVPVR---- 245 (466)
T ss_pred --------------------HHHhc--------------cccC--CCceeeehhhhccChHHHHHHHHhcCCCCcc----
Confidence 22221 1111 1378888999999999999999999999975
Q ss_pred CCCCCCCccccccccCCCCCCeEEEEEEEee--------cCCCceEEEEEEecceeCCCCEEEeCCC-------Cc-eee
Q 008294 369 KGTDPENPEATLERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANK-------GK-KER 432 (571)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------d~~~G~i~~~rV~sG~l~~gd~v~~~~~-------~~-~~~ 432 (571)
|...|..+.|.+.|. +.-.|-++-|-++.|.|+.||.+-..+. |. ..+
T Consensus 246 ----------------df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~ 309 (466)
T KOG0466|consen 246 ----------------DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCR 309 (466)
T ss_pred ----------------ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEe
Confidence 235666777777763 2234678999999999999999975431 11 111
Q ss_pred --cceEEEeccCceeecCeecCCCEEEE-eCCCC
Q 008294 433 --IGRLLEMHANSREDVKVALAGDIIAL-AGLKD 463 (571)
Q Consensus 433 --i~~i~~~~g~~~~~v~~a~aGdiv~i-~gl~~ 463 (571)
..+|..+. .+..+++.|.+|-.+++ +.++.
T Consensus 310 Pi~SrI~sL~-AE~n~L~~AvPGGLIGVGT~~DP 342 (466)
T KOG0466|consen 310 PIFSRIVSLF-AEQNDLQFAVPGGLIGVGTKMDP 342 (466)
T ss_pred eHHHHHHHHH-hhhccceeecCCceeeeccccCc
Confidence 22233333 23467889999999988 55554
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=145.99 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=77.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe----------ecCeEEE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----------WNKHRIN 158 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~----------~~~~~i~ 158 (571)
...+|+++|..|+|||||++++.......... ...|.........+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFI----------------TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCC----------------CccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 35789999999999999999997321100000 001111111111111 1236789
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~ivviNK~D~~~ 221 (571)
||||||+.+|.......++.+|++|+|+|+.+....+....|. .+.. .+.|+++|+||+|+..
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 9999999999888899999999999999998744444333332 2222 3678999999999754
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=147.71 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=84.7
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
.+.+..+.++|+|+|++|+|||||+|+|+..... ... ....|.|.......+ + ..+.+|||
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~---------------~~~~~~t~~~~~~~~--~-~~~~liDt 71 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKL-ART---------------SKTPGRTQLINFFEV--N-DGFRLVDL 71 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccc---------------cCCCCcceEEEEEEe--C-CcEEEEeC
Confidence 3345567789999999999999999999732110 000 001234444332222 2 37999999
Q ss_pred CCCCC----------cHHHHHHHHH---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 163 PGHVD----------FTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 163 PG~~~----------f~~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
||+.+ |...+..+++ .+|++++|+|+..+....+..+++.+...++|+++|+||+|+..
T Consensus 72 pG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 72 PGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99742 2333334444 45899999999999999998888888889999999999999864
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-16 Score=141.99 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|++|+|||||+++|...... ..+ ...+++.......+.+.+..+++|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA--IVS---------------DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE--ecc---------------CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc
Confidence 37899999999999999999722110 000 0134555555556667788999999999987643
Q ss_pred H--------HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 171 E--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
. ....+..+|++++|+|+.+.........+.. ..+.|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 65 EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 2 3456778999999999997666555554444 568999999999998643
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-16 Score=142.94 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+...- ... + ....|.+.......+......+.+|||||+..|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~-----------~---~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF--NLD-----------S---KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CCC-----------C---CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 46899999999999999999972211 000 0 0011222222222222233578999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888899999999999999864443333323 22222 3589999999999753
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=142.26 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=73.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~~ 170 (571)
.|+++|.+|+|||||+++|..... .. . ....|.++ ..+.. ....+.+|||||+..+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~~--~-------------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~ 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VT--T-------------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--cc--c-------------cCccCcce----EEEEeCCceEEEEEECCCCHhHHH
Confidence 378999999999999999972211 00 0 00112221 11222 357899999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhH-HHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQS-ETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
.+...++.+|++|+|+|+.+...... ...+. .+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 88888999999999999987542111 11122 222 25799999999999854
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-16 Score=142.71 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=75.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+......... ++ ..+ .. .....+......+.+|||||+.++...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~-----~~-~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYE-----PT-KAD----------SY-RKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccC-----Cc-chh----------hE-EEEEEECCEEEEEEEEECCChhhhhHH
Confidence 79999999999999999998322111000 00 000 00 011122234567999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++++|+|..+.-... ....+.... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 999999999999999987642211 112222222 25799999999999754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=146.24 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=75.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~ 166 (571)
+..++|+++|++|+|||||+++|+.... .... ..+.|+......+.+.+ ..+++|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~---~~~~---------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADV---YAED---------------QLFATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchh---ccCC---------------ccceeccceeEEEEecCCceEEEeCCCccc
Confidence 4468999999999999999999973210 0000 01223333334444444 389999999985
Q ss_pred Cc-HH-------HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCcccc
Q 008294 167 DF-TL-------EVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f-~~-------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~~ 222 (571)
+. .. .....+..+|++++|+|+.++........| ..+ ...++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 42 11 122345688999999999876554433222 222 2346899999999998653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=141.68 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=78.4
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 172 (571)
|+++|..|+|||||+++|..... . . ++. .|+......+.+.+..+.+|||||+.+|...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~--~--~---------~~~-------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS--L--E---------SVV-------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--c--c---------ccc-------ccCCcceEEEeeCCeEEEEEECCCCcchhHHH
Confidence 78999999999999999972211 0 0 000 01111224456678899999999999999999
Q ss_pred HHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHH--hcCCCeEEEEecCCcccc
Q 008294 173 ERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 173 ~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~--~~~~p~ivviNK~D~~~~ 222 (571)
..+++.+|++|+|+|+++...... ...+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 999999999999999987543222 22223332 257999999999998654
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=146.25 Aligned_cols=115 Identities=21% Similarity=0.253 Sum_probs=77.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
...+|+++|..|+|||||+++|+.... . +. + ....|+... ...+.+. ...+.||||||+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~--~--~~---------~---~~t~~~~~~--~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF--S--GS---------Y---ITTIGVDFK--IRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C--CC---------c---CccccceeE--EEEEEECCEEEEEEEEeCCCch
Confidence 367899999999999999999972211 0 00 0 001122222 2223333 3578999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.|.......++.+|++++|+|+++....+....| ..+.. ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9988889999999999999999875443333323 22222 3589999999999753
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=146.69 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=80.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|+++|+.|+|||||+++|+... .... ....|.+.......+....+.+.||||||+.
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~--~~~~---------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSS--VEDL---------------APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCC--CCCc---------------CCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 3445789999999999999999997321 1000 0111223322222332234678999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HH----hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-AD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~----~~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++|+|+|+.+........ .|.. +. ..+.|.++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 74 RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99988899999999999999998754444332 3422 22 23678999999999854
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=149.94 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..+..+||+||.+|+|||||.|.++ |..... ..++..+|.......+..+..++.|.||||.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mi---g~kv~~--------------vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMI---GQKVSA--------------VSRKVHTTRHRILGIITSGETQLVFYDTPGL 130 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhh---CCcccc--------------ccccccceeeeeeEEEecCceEEEEecCCcc
Confidence 44578999999999999999999997 221111 1223345666777777888999999999995
Q ss_pred CC------------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-CCCeEEEEecCCccc
Q 008294 166 VD------------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~------------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~p~ivviNK~D~~~ 221 (571)
.. +......++..||.+++|+|+.+.-....-.++..++.+ ++|-|+|.||+|...
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 43 344567789999999999999863334444556666654 799999999999764
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-16 Score=147.86 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|+.|+|||||+++|+.... .. .+. ..+.......+.+++ ..++||||||+.+|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~-----------~~~------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EP-----------KYR------RTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Cc-----------cCC------CchhhheeEEEEECCEEEEEEEEECCCchhhh
Confidence 478999999999999999973211 00 000 001111112233334 678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.....++..+|++|+|+|+.+....+....| ..+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 8888899999999999999875443322222 122 225799999999999754
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=138.92 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=76.5
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 172 (571)
|+++|+.|+|||||+++|..... . .++. + |.......+..++..+.+|||||+..|...+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~---~----------~~~~-----~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 61 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF---S----------EDTI-----P--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMW 61 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC---C----------cCcc-----C--CCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 78999999999999999962110 0 0000 0 1112222344567889999999999999989
Q ss_pred HHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 173 ERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 173 ~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
..+++.+|++++|+|+.+.... +....+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999999763222 2222333332 247899999999997643
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-16 Score=146.49 Aligned_cols=115 Identities=21% Similarity=0.205 Sum_probs=75.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||++++....... +...+ ..+.+.......+......++||||||+.+|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~---~~~~~------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN---GNFIA------------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc---cCcCC------------cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 68999999999999999997221100 00000 0111222222222223468999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 88889999999999999875333222222 23322 3689999999999753
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=140.21 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++. +..... +.+.. + ........+......+.||||||+..|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~-----------~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEK-----------YDPTI---E-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------CCCch---h-heEEEEEEECCEEEEEEEEECCCcccccc
Confidence 3799999999999999999973 211110 00000 0 01111122222235688999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (571)
.....++.+|++++|+|.++....+....| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 888899999999999999875433322222 22222 479999999999974
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=141.96 Aligned_cols=110 Identities=21% Similarity=0.166 Sum_probs=78.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|.. ... .. + ..|+......+..++..+++|||||+..|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~---~~~--~~---------~-------~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG---EIP--KK---------V-------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CCC--cc---------c-------cCcccceEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999962 110 00 0 01222223345567899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
+..+++.+|++|+|+|+++..... ....+..+.. .++|+++|+||+|+..+
T Consensus 60 ~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 60 WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 999999999999999998743222 2223333322 47899999999998764
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.6e-16 Score=142.55 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++++. +..... +... -+.+. .....+......+.+|||||+.+|..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~--------~~~t------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRES--------YIPT------IEDTY-RQVISCSKNICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCC--------cCCc------chheE-EEEEEECCEEEEEEEEECCCCCcchH
Confidence 4689999999999999999972 211100 0000 00011 11223333457799999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh------cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~------~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|..+....... ..+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 888889999999999999876544332 22333332 4689999999999753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=157.00 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG 164 (571)
..+-+..|+|||.+|||||||+++|. +....... . .++|+......+.+ ++..+++|||||
T Consensus 154 elk~~adVglVG~PNaGKSTLln~ls---~a~~~va~-y--------------pfTT~~p~~G~v~~~~~~~~~i~D~PG 215 (335)
T PRK12299 154 ELKLLADVGLVGLPNAGKSTLISAVS---AAKPKIAD-Y--------------PFTTLHPNLGVVRVDDYKSFVIADIPG 215 (335)
T ss_pred EEcccCCEEEEcCCCCCHHHHHHHHH---cCCCccCC-C--------------CCceeCceEEEEEeCCCcEEEEEeCCC
Confidence 44556789999999999999999996 22222111 1 24467766666766 557899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-----cCCCeEEEEecCCccc
Q 008294 165 HVD-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~-------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
+.+ +.....+.+..+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 216 li~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 216 LIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred ccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 854 344567778889999999999864333333333 33433 3689999999999864
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=140.43 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|.++|..|+|||.|+.++...+.. + ..+..-|+.+......++.+..++++|||+|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~--------------e--~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE 69 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFT--------------E--SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE 69 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcc--------------h--hhcceeeeEEEEEEeeecceEEEEEeeeccccH
Confidence 355789999999999999999999511110 0 011123444555444555566789999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCCeEEEEecCCcccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~---~~~p~ivviNK~D~~~~ 222 (571)
+|...+..++|.|+++|+|+|.++.-.......|. .+++ .++|.++|.||+|+...
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 99999999999999999999999866666666653 3333 37899999999998654
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.9e-16 Score=143.36 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=78.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|+.|+|||||+++|. +..... . ....|.+ ...+.+.+..+.+|||||+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~---~~~~~~-----------~---~~t~g~~----~~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA---SEDISH-----------I---TPTQGFN----IKTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHh---cCCCcc-----------c---CCCCCcc----eEEEEECCEEEEEEECCCCHH
Confidence 336789999999999999999996 210000 0 0011222 224455678999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHH----HHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQ----ADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~----~~~~~~p~ivviNK~D~~~~ 222 (571)
+...+...++.+|++++|+|+.+..... ....+.. ....++|+++++||+|+...
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 8888888899999999999998632211 1222222 23357999999999998653
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=143.84 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=80.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|..|+|||||+.++.. +.... .+ ....|.......+.+......++||||||+.+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~--~~~~~-----------~~---~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQD--GSTES-----------PY---GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc--CCCCC-----------CC---CCcceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3467899999999999999999973 11100 00 00112222222222322347889999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
|...+...++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+..
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 998888889999999999999876554444433 23332 4789999999999753
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=141.16 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=76.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++. +..... + ....|.........+......+.||||||+.+|.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 68 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVT--NKFDTQ-----------L---FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR 68 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHc--CCCCcC-----------c---CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 57899999999999999999972 111000 0 0011222222222232344678899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HH-------hcCCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD-------KYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~-------~~~~p~ivviNK~D~~ 220 (571)
......++.+|++++|+|..+....+....|.. +. ..++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 69 SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 888889999999999999986543333332321 11 2468999999999975
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=138.65 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=78.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|......... ....+.+..............+++|||||+..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 6899999999999999999722211100 001122333333333334578899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc---CCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~ivviNK~D~~ 220 (571)
....++.+|++++|+|+.+.........| ..+... ++|+++++||+|+.
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999999999999874333332223 334443 58999999999975
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=140.70 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=77.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|+.|+|||||+++|+.... .. . .+. + ....++. ..+......+++|||||+.++...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~--~-~~~-~---------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PE--N-VPR-V---------LPEITIP---ADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Cc--c-CCC-c---------ccceEee---eeecCCeEEEEEEeCCCchhhhHH
Confidence 689999999999999999973211 10 0 000 0 0011111 122235678999999999988888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
+...++.+|++++|+|+.+....... ..| ..++. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 88888999999999999876554442 233 33332 37899999999998643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=156.49 Aligned_cols=119 Identities=21% Similarity=0.236 Sum_probs=79.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTP 163 (571)
...+-+..|++||.+|+|||||+++|.. ....... . ..+|.......+.+.+ ..++|||||
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~---~~~~va~-y--------------~fTT~~p~ig~v~~~~~~~~~i~D~P 213 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSA---AKPKIAD-Y--------------PFTTLVPNLGVVRVDDGRSFVIADIP 213 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhc---CCccccC-C--------------CCCccCCEEEEEEeCCceEEEEEeCC
Confidence 3445567899999999999999999962 2111111 1 1234444445555555 899999999
Q ss_pred CCCC-------cHHHHHHHHHhcCeEEEEEeCCCC---CchhHHHHH-HHHHh-----cCCCeEEEEecCCccc
Q 008294 164 GHVD-------FTLEVERALRVLDGAICLFDSVAG---VEPQSETVW-RQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~-------f~~~~~~~l~~~D~~ilVvda~~g---~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
|+.+ ......+.+..+|++++|+|+.+. ........| +.+.. .++|+++|+||+|+..
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 9864 334556677789999999999864 122222222 33332 3689999999999864
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=142.28 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++. +..... +.+ ..+.... ....+......++||||||..+|..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-----------~~~---t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPDY-----------HDP---TIEDAYK-QQARIDNEPALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCC-----------cCC---cccceEE-EEEEECCEEEEEEEEeCCCchhhHH
Confidence 4799999999999999999973 211100 000 0010110 1112222336789999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|..+.........| ..+. ..++|+++|+||+|+..
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 889999999999999999887665554322 2222 24789999999999753
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=139.64 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=75.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+......... .+ .+.+.......+......+++|||||+..+...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHE-----ST-----------TQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC-----Cc-----------cceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 79999999999999999998322110000 00 001111112222223457899999999988888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..++...+....| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88888999999999999876443333333 2222 23689999999999763
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=141.38 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++++. +..... + ....|.........+......+++|||||+.+|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~~~-----------~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFPER-----------T---EATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCCCc-----------c---ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 57899999999999999999972 111000 0 0001112222222222234789999999999886
Q ss_pred H-HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCCeEEEEecCCccc
Q 008294 170 L-EVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~-~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~ivviNK~D~~~ 221 (571)
. .....++.+|++++|+|+.+....+....|. .+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 4 4666788999999999999876666555554 3332 3689999999999754
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=144.90 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+........ ..+ . +... .....+......++||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-----~~t-~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY-----DPT-I----------EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-----CCc-h----------HhhE-EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 3889999999999999999732111000 000 0 0011 011112222356899999999999998
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 89999999999999999875443332222 32322 4689999999999753
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=144.44 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=82.5
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
...+....++|+++|++|+|||||+++|+.... ... .....|.|....... + +..+.||||
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~---------------~~~~~~~t~~~~~~~--~-~~~l~l~Dt 77 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR---------------TSKTPGRTQLINFFE--V-NDKLRLVDL 77 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---------------ccCCCCceeEEEEEe--c-CCeEEEeCC
Confidence 345566788999999999999999999972110 000 011124454433322 2 468999999
Q ss_pred CCCCC----------cHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 163 PGHVD----------FTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 163 PG~~~----------f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
||+.. +......+++.+ +++++|+|+..+......+++..+...++|+++++||+|+...
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 99642 223333444443 6788999998877777666777777889999999999998643
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=147.19 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|+.|+|||||+++|+...... ++ ....|++.....+.+......++||||||+..
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------~~---~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~ 73 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------ES---KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------CC---CCceeEEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 346799999999999999999997221100 00 00112222222222322346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~ 220 (571)
|.......++.+|++|+|+|..+....+....| ..+.. .++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 988888999999999999999875444444333 33332 478999999999974
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=147.49 Aligned_cols=117 Identities=24% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|..|+|||||+++++. +..... .....|+++.............+.+|||||+.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~--------------~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 3457899999999999999999872 211110 001123333322222223457899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH--hcCCCeEEEEecCCcc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD--KYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~--~~~~p~ivviNK~D~~ 220 (571)
|......+++.+|++|+|+|.++....+....|. .+. ..++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 9888888899999999999999765555444442 222 2478999999999974
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=141.71 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=74.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++..... . .+.+ ..|.........+......++||||||+.+|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--K-----------NYKA---TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC---ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 5899999999999999999832110 0 0000 0111222222222223467999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHhc----CCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY----GVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~----~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|+.+.........|. .+.+. ..|+++|.||+|+..
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 889999999999999997643333333332 23222 256899999999753
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=127.53 Aligned_cols=83 Identities=33% Similarity=0.596 Sum_probs=76.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEeCCCCccc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT 466 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 466 (571)
|.++|||+..|++.|+++|+|||+|+|++||.|++...+ ..+++++++.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999977653 35789999999999999999999999999999999999
Q ss_pred cceecC
Q 008294 467 GETLCD 472 (571)
Q Consensus 467 Gdtl~~ 472 (571)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=140.74 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=66.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC----C
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV----D 167 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~----~ 167 (571)
+|+++|++|+|||||+++|.... . .+ ..|+ .+.+.. .+|||||+. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~---~------------~~-------~~t~-----~~~~~~---~~iDt~G~~~~~~~ 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE---I------------LY-------KKTQ-----AVEYND---GAIDTPGEYVENRR 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc---c------------cc-------ccce-----eEEEcC---eeecCchhhhhhHH
Confidence 68999999999999999996110 0 00 0011 122222 689999983 2
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+...++.+|++++|+|+.++...+....+.. .+.|.++|+||+|+..
T Consensus 52 ~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 52 LYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred HHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 33334456789999999999998776655433322 2459999999999753
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=159.11 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~ 165 (571)
.+-+..|+|||.+|||||||+|+|. +....... ..++|.......+.+.+ ..+.|+||||+
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt---~~k~~vs~---------------~p~TT~~p~~Giv~~~~~~~i~~vDtPGi 217 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVS---AAKPKVAD---------------YPFTTLVPNLGVVRVDDERSFVVADIPGL 217 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHh---CCcccccC---------------CCCCccCcEEEEEEeCCCcEEEEEeCCCc
Confidence 3445689999999999999999996 22222111 13456666666666664 46999999998
Q ss_pred CC-------cHHHHHHHHHhcCeEEEEEeCCC----CCchhHHHHHHHHHhc-----CCCeEEEEecCCccc
Q 008294 166 VD-------FTLEVERALRVLDGAICLFDSVA----GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~-------f~~~~~~~l~~~D~~ilVvda~~----g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (571)
.+ ....+.+.+..+|++++|||+.. ....+....++.+..+ +.|.++|+||+|+..
T Consensus 218 ~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 218 IEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred cccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 64 33456678899999999999872 1122223344444443 689999999999854
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=145.12 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=77.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+... ... + ..|+........+..+.+.||||||+..|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f~~------------~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--FKD------------T-------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCC------------C-------CCccceEEEEEEeeEEEEEEEeCCCcccchhh
Confidence 68999999999999999997221 100 0 00222222223345678999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+++......... |..+.. .++|+++|.||+|+..
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 8889999999999999987544444332 333332 3689999999999864
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=140.23 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=75.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||++++..... .. .+.+ ..+... .....+......+.+|||||+.+|...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~-----------~~~~---t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE-----------SYDP---TIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC---cchheE-EEEEEECCEEEEEEEEeCCCcccchhh
Confidence 689999999999999999972221 10 0000 001010 111112223367899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+....+....| +.....++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999999999999865433332222 212234799999999999753
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-16 Score=127.31 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=74.3
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCcc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTI 465 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~ 465 (571)
|.++|||+.+|++.|+++++|||+|+|++||.|++...++.+++++|+.+ +.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 57999999999999999999999999999999999887778999999955 7778999999999999995 3 67788
Q ss_pred ccceecC
Q 008294 466 TGETLCD 472 (571)
Q Consensus 466 ~Gdtl~~ 472 (571)
+|||||+
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
|
The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-15 Score=134.61 Aligned_cols=125 Identities=22% Similarity=0.210 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcce-eeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~ 167 (571)
..+|+++|..++||||++.++.+....... .++-..+ ...|.+|+.....++...+ +.+.|.|||||.+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~---------k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSG---------KGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccccccc---------ccccceeEeecccceEEcCcceEEEecCCCcHH
Confidence 468999999999999999999744331111 0000000 0034578888888887766 8999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CCeEEEEecCCccccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~~~~ 223 (571)
|.-.+.-..+.++++|++||++.+.....+++++.+...+ +|++|++||.|+..+.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 9999999999999999999999988887788888888887 9999999999998764
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=140.75 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=73.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-cHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-FTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~-f~~ 170 (571)
+|+++|.+|+|||||+++++... .. +.. ..+. + +.......+......+.+|||||+.. +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~--~~~-~~t~-----------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI--GEY-DPNL-----------E-SLYSRQVTIDGEQVSLEILDTAGQQQADTE 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc--ccc-CCCh-----------H-HhceEEEEECCEEEEEEEEECCCCcccccc
Confidence 48999999999999999997311 10 110 0000 0 11111222333445789999999985 455
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH-----hcCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-----KYGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~-----~~~~p~ivviNK~D~~ 220 (571)
.....++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 677889999999999999876444433332 2222 2379999999999974
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=138.99 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=76.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~~ 170 (571)
+|+++|.+|+|||||+++|........ +.. ....|..+......+. .....+.+|||||+..|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~--~~~------------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP--KNY------------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--ccC------------CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 689999999999999999973211110 000 0001222222222222 2447899999999998888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888899999999999999865333322333 22332 3689999999999754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=135.79 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=90.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+++++|..++|||+|+++++|.......... -|+.+-+..+.+....++++||||+|+++|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqAT----------------IGiDFlskt~~l~d~~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQAT----------------IGIDFLSKTMYLEDRTVRLQLWDTAGQERF 84 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccce----------------eeeEEEEEEEEEcCcEEEEEEEecccHHHH
Confidence 3478999999999999999999977654332221 255666666666667889999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc----CCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY----GVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~----~~p~ivviNK~D~~~~ 222 (571)
...+-.++|.+.++|+|+|.++--.......| +.++.. ++-+++|.||.||...
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 99999999999999999999876554433333 444433 2446678999999765
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=163.81 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+.. ..... ....|+|.+.....+.+++..+++|||||+.++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~---~~a~v--------------~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGE---ERAIV--------------TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCccc--------------CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 468999999999999999999721 11111 1124556666666677788999999999998754
Q ss_pred HH--------HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 LE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. ....++.+|++++|+|++++........|.. ..++|+++|+||+|+..
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 32 3446788999999999998776665555554 45789999999999854
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=145.35 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=74.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---cCeEEEEEcCCCCCCc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHVDF 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i~liDTPG~~~f 168 (571)
+|+++|.+|+|||||+++|+..... . .+ ...++.+.....+.. ....++||||||+..|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~--~-----------~~-----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~ 63 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG--K-----------SY-----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG 63 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--C-----------CC-----CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH
Confidence 6899999999999999999722110 0 00 011122222222222 2478999999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++|+|+|+++.........| ..+.. .+.|+++|+||+|+..
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 88888899999999999999875433333333 23322 2357889999999853
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=155.49 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~ 167 (571)
..++|+++|.+|+|||||+|+|+ +... .... ..+.|.+.....+.+ ++..+.||||||+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~---~~~~-~v~~--------------~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALT---GADV-YAAD--------------QLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh---CCce-eecc--------------CCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 45889999999999999999996 2111 1110 123344444445555 567999999999832
Q ss_pred -c-------HHHHHHHHHhcCeEEEEEeCCCCCchhHHH----HHHHHHhcCCCeEEEEecCCccc
Q 008294 168 -F-------TLEVERALRVLDGAICLFDSVAGVEPQSET----VWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 -f-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~----~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. ...+...+..+|++++|+|+++........ .+..+...++|+++|+||+|+..
T Consensus 250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 1 112334578899999999998765443332 23333334789999999999753
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=140.16 Aligned_cols=113 Identities=27% Similarity=0.306 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f 168 (571)
++|+++|++|+|||||+++|+... . +.+...+++.......+..++ +.+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----F--------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----C--------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 589999999999999999997221 0 111123455555554455666 78999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
........+.++.++.++|.... ...+...++..+.. ++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 77777777777777777776543 22233333333333 8899999999998653
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=162.77 Aligned_cols=119 Identities=19% Similarity=0.254 Sum_probs=82.2
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
...+-+..|+|||.+|||||||+|+|. +....+.. ..++|+......+.+.+..++|+||||
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls---~akpkIad---------------ypfTTl~P~lGvv~~~~~~f~laDtPG 215 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALS---AAKPKIAD---------------YPFTTLVPNLGVVQAGDTRFTVADVPG 215 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHh---cCCccccc---------------cCcccccceEEEEEECCeEEEEEECCC
Confidence 445567899999999999999999996 22222211 135577777777777889999999999
Q ss_pred CCCc-------HHHHHHHHHhcCeEEEEEeCCCC---Cch-hHHH-HHHHH--------------HhcCCCeEEEEecCC
Q 008294 165 HVDF-------TLEVERALRVLDGAICLFDSVAG---VEP-QSET-VWRQA--------------DKYGVPRICFVNKMD 218 (571)
Q Consensus 165 ~~~f-------~~~~~~~l~~~D~~ilVvda~~g---~~~-~~~~-~~~~~--------------~~~~~p~ivviNK~D 218 (571)
+.+- ..+..+.+..+|++|+|||++.. ..+ .... +...+ ...++|+++|+||+|
T Consensus 216 liegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiD 295 (500)
T PRK12296 216 LIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKID 295 (500)
T ss_pred CccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECcc
Confidence 7542 23456677889999999999742 111 1111 11122 124689999999999
Q ss_pred ccc
Q 008294 219 RLG 221 (571)
Q Consensus 219 ~~~ 221 (571)
++.
T Consensus 296 L~d 298 (500)
T PRK12296 296 VPD 298 (500)
T ss_pred chh
Confidence 864
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-15 Score=138.03 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.++++... .. ++.+ ..|..... ...+....+.++||||||+.+|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~-----------~~~p---t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PS-----------EYVP---TVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-----------CCCC---ceeeeeEE-EEEECCEEEEEEEEECCCccchhh
Confidence 4799999999999999999973211 10 0000 00111110 111222236789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHH-HHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWR-QADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~-~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++........ .|. .+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 7778899999999999998765444432 342 2322 3689999999999754
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=143.24 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~f~ 169 (571)
+|+++|.+|+|||||+++++... ... . + ...++.......+.+++ +.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~--~---------~-----~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPE--E---------Y-----IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCc--c---------c-----CCccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence 68999999999999999997321 110 0 0 00111111111222334 678899999987642
Q ss_pred ----HH----HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH------hcCCCeEEEEecCCccc
Q 008294 170 ----LE----VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD------KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ----~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~------~~~~p~ivviNK~D~~~ 221 (571)
.+ ...+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 11 34567899999999999876444433333 2222 24689999999999854
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=139.83 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|++|+|||||+++++..... +...+ +. +... .....+...++.+.+|||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~----~~~~~-t~-----------~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV----ESYYP-TI-----------ENTF-SKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc----cccCc-ch-----------hhhE-EEEEEECCEEEEEEEEECCChHhhHH
Confidence 68999999999999999999732110 10000 00 0000 01111111346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH----hcCCCeEEEEecCCcc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRL 220 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~----~~~~p~ivviNK~D~~ 220 (571)
.....+..+|++++|+|..+....+.... +..+. ..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 88889999999999999987544333322 23222 2468999999999975
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=154.61 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=95.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
...+..+++|+|.||+|||||+|+|+ +....+.+.- .|+|.+.-...+..+++.+.++||+|.
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~---~~d~AIVTdI--------------~GTTRDviee~i~i~G~pv~l~DTAGi 275 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALL---GRDRAIVTDI--------------AGTTRDVIEEDINLNGIPVRLVDTAGI 275 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHh---cCCceEecCC--------------CCCccceEEEEEEECCEEEEEEecCCc
Confidence 34456789999999999999999997 3333333322 577999999999999999999999998
Q ss_pred CCcHH--------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDFTL--------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~--------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+-.. .....+..||.+++|+|++.+.......++. +...+.|+++|+||+|+...
T Consensus 276 Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 276 RETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 76422 2455788999999999999987777777766 66678999999999998764
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=136.90 Aligned_cols=120 Identities=19% Similarity=0.132 Sum_probs=93.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+....|.++|.+|+|||+++.++...+........ -|+......+.+......+++|||.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sT----------------iGIDFk~kti~l~g~~i~lQiWDtaGQ 71 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFIST----------------IGIDFKIKTIELDGKKIKLQIWDTAGQ 71 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccce----------------EEEEEEEEEEEeCCeEEEEEEEEcccc
Confidence 4566889999999999999999999744432222211 355666666666666788999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH-H---hcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA-D---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~-~---~~~~p~ivviNK~D~~~ 221 (571)
..|...+..+++.|+++++|+|.+..........|... . ..++|.++|.||+|+..
T Consensus 72 erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 72 ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 99999999999999999999999987666655555332 2 23789999999999865
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=139.19 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=74.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++++........... ..........+....+.+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t-----------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-----------------VFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------eeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 6899999999999999999732211000000 00011111222223456889999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHH--hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSET-VW-RQAD--KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~--~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+.-..+... .| ..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 777889999999999998754433331 22 2222 35799999999999854
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=159.13 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+|+|+.....+ .. ...|+|.+.....+.+++..+++|||||+.+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai---vs--------------~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI---VS--------------DIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc---cC--------------CCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 345689999999999999999997321111 01 1246677777777788899999999999976
Q ss_pred cHHH--------HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FTLE--------VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~--------~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+... ...+++.+|++++|+|++++...... .+..+...++|+++|+||+|+..
T Consensus 264 ~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 264 HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 5432 34577889999999999987665554 45555556899999999999854
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=144.00 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=76.5
Q ss_pred EcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHH
Q 008294 96 MAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERA 175 (571)
Q Consensus 96 vG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 175 (571)
+|..|+|||||++++++ +.... .+. ..-|++.......+......+.||||||+.+|...+..+
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~-----------~~~---~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK-----------KYV---ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC-----------CCC---CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 69999999999999972 21110 000 011223322222222345789999999999999989999
Q ss_pred HHhcCeEEEEEeCCCCCchhHHHHHHH-HHh--cCCCeEEEEecCCcc
Q 008294 176 LRVLDGAICLFDSVAGVEPQSETVWRQ-ADK--YGVPRICFVNKMDRL 220 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~--~~~p~ivviNK~D~~ 220 (571)
++.+|++|+|+|.++.........|.. +.+ .++|+++|+||+|+.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999998766555544533 333 478999999999974
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=156.67 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=80.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG 164 (571)
..+-+..|+++|.+|||||||+++|. +...+.+. . .++|.......+.+. +..++|+||||
T Consensus 154 elk~~adVglVG~pNaGKSTLLn~Lt---~ak~kIa~-y--------------pfTTl~PnlG~v~~~~~~~~~laD~PG 215 (424)
T PRK12297 154 ELKLLADVGLVGFPNVGKSTLLSVVS---NAKPKIAN-Y--------------HFTTLVPNLGVVETDDGRSFVMADIPG 215 (424)
T ss_pred eecccCcEEEEcCCCCCHHHHHHHHH---cCCCcccc-C--------------CcceeceEEEEEEEeCCceEEEEECCC
Confidence 34445689999999999999999996 22222211 1 244666666666665 78899999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCC--Cch--hHHHHHHHHHh-----cCCCeEEEEecCCcc
Q 008294 165 HVD-------FTLEVERALRVLDGAICLFDSVAG--VEP--QSETVWRQADK-----YGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~-------f~~~~~~~l~~~D~~ilVvda~~g--~~~--~~~~~~~~~~~-----~~~p~ivviNK~D~~ 220 (571)
+.. ......+.+..+|++|+|||+++. ..+ ....+...+.. .++|.++|+||+|+.
T Consensus 216 liega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 854 234456667789999999999743 122 22233344443 378999999999974
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=134.69 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=81.3
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCCcH----
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDFT---- 169 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~f~---- 169 (571)
++|++|+|||||+++|+...... .....+.|.......+.+. ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-----------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-----------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh
Confidence 58999999999999997221110 0111233444444444443 6789999999988764
Q ss_pred ---HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 ---LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ---~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
......++.+|++++|+|+..................++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 34556789999999999999887777766566777789999999999998653
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=140.45 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=84.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|..|+|||||+++|. .+..... .-|.......+.+++..+++||.+|+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~~~-------------------~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEISET-------------------IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEEEE-------------------EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hcccccc-------------------CcccccccceeeeCcEEEEEEecccccc
Confidence 567899999999999999999996 2221111 1144444556667899999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCc-hhHHHHHHHH-H---hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQA-D---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~~-~---~~~~p~ivviNK~D~~~~ 222 (571)
+...+..++..+|++|+|||+++.-. ....+.+..+ . ..++|+++++||.|+.++
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 88888899999999999999986321 2233333332 2 247899999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=159.77 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
.+||++|++|+|||||+|+| +|...+.|.+ .|+|+......+..+++.+.++|.||..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~L---TG~~q~VgNw---------------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNAL---TGANQKVGNW---------------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHH---hccCceecCC---------------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 46999999999999999999 5877777765 5899999999999999999999999976641
Q ss_pred -----HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 -----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 -----~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.-+..++. ..|++|.|+||++ -.....+..++.+.++|+++++|++|...
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~ 122 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAK 122 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHH
Confidence 11333333 4599999999976 45566666788899999999999999653
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-16 Score=151.57 Aligned_cols=156 Identities=17% Similarity=0.274 Sum_probs=117.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhc-eeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG-ITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g-~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
...+.|+++|++|+|||||+++|+...... .. ....| +++ +...+.+++++||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~------~~~~g~i~i------~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NI------SDIKGPITV------VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------cc------ccccccEEE------EecCCceEEEEeCCchH
Confidence 445789999999999999999997331110 00 01122 111 22367889999999964
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCcccc--chhhhHHHHHHHhCCcce---
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGA--NFFRTRDMIVTNLGAKPL--- 240 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~--~~~~~~~~i~~~l~~~~~--- 240 (571)
..+...++.+|.+++|+|+..+...++..++..+...++|.++ |+||+|+... ...++.+++++.+.....
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5677788999999999999999999999999999989999655 9999999642 345666677665442221
Q ss_pred ---------eeeccCCCCCCcceeeecccceeEEecC
Q 008294 241 ---------VVQLPVGAEDNFKGVVDLVKMKAIIWSG 268 (571)
Q Consensus 241 ---------~~~~pi~~~~~~~~~id~~~~~~~~~~~ 268 (571)
|+++|.++..+|.+.++++.++++.|..
T Consensus 172 ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~ 208 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRN 208 (225)
T ss_pred cEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeec
Confidence 4567888889999999999999999965
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=140.89 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+...... +. + ....|.+.......+......+++|||||+.+|...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~---~~---------~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV---GP---------Y---QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC---cC---------c---ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 68999999999999999997321110 00 0 000122222222223223356789999999988777
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc--CCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|.++.........| ..+... ++|+++|+||+|+..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 77788899999999999875333322222 333332 689999999999754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-15 Score=135.12 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=74.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCCCcH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVDFT 169 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~~f~ 169 (571)
+|+++|++|+|||||+++|+.... ... +.+. +.......+..+ .+.+++|||||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~----~~~---------~~~~------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF----VEE---------YDPT------IEDSYRKTIVVDGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC----CcC---------cCCC------hhHeEEEEEEECCEEEEEEEEECCChHHHH
Confidence 489999999999999999973211 000 0000 001111122223 4678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|..+...... ...+..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 888899999999999999976432222 222333322 4799999999999754
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=140.64 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=76.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+... ... .+ ....|.+.......+......+.+|||||+.+|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSE-----------ST---KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------CC---CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 68999999999999999997211 100 00 001122222222333233467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 89999999999999999875443333333 22222 3578999999999753
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=139.98 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=74.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++.... .. ++. ...|..+......+......+.+|||+|+..|...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~-----------~~~---~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE-----------DYI---QTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCC---CccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 689999999999999999973211 10 000 01122222222222223467899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++++|+|+++.........| ..++. ...| ++|+||+|+..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 88899999999999999875444333233 23332 2455 78899999853
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-15 Score=138.03 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=77.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|..|+|||||+++++. +... ... ...+ .|.........+......+++|||+|...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~-~~~-~~~T-----------~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 66 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFS-LNA-YSPT-----------IKPRYAVNTVEVYGQEKYLILREVGEDEV 66 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCC-ccc-CCCc-----------cCcceEEEEEEECCeEEEEEEEecCCccc
Confidence 3578999999999999999999972 2111 000 0000 11111112222222336788999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH-hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~-~~~~p~ivviNK~D~~~ 221 (571)
+......+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 67 AILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred ccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 887778888999999999999775322222 2222222 23799999999999753
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=145.57 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=73.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++. +.... . ... +.. ........+....+.++||||+|+.+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~--~-y~p-Ti~-----------d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEE--Q-YTP-TIE-----------DFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCC--C-CCC-Chh-----------HhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 689999999999999999972 21110 0 000 000 011111222223478899999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh------------cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADK------------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~------------~~~p~ivviNK~D~~~ 221 (571)
...++..+|++|+|+|.++....+.... +..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 7778889999999999987543332222 222221 3689999999999853
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.3e-15 Score=138.75 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=74.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~~ 170 (571)
+|+++|..|+|||||+++|+.......... + .+.... ...... .....+.+|||||+.+|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~-----t-----------~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVP-----T-----------VFENYV-TNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCC-----e-----------eeeeeE-EEEEecCCcEEEEEEEECCCchhHHH
Confidence 689999999999999999973211100000 0 000110 011111 1245789999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHH-HHH--hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWR-QAD--KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~-~~~--~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++|+|+|+++........ .|. ... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 7777889999999999998754443332 232 222 24789999999999754
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=138.21 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=73.1
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCCc-----
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVDF----- 168 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~f----- 168 (571)
++|++|+|||||+++|... ....+ ...+.|.......+.++ +..+++|||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~---~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA---KPKVA---------------NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC---Ccccc---------------CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC
Confidence 5899999999999999721 11111 11234555555556667 889999999998442
Q ss_pred --HHHHHHHHHhcCeEEEEEeCCCCC-----ch-hHH-HHHHHHH----------hcCCCeEEEEecCCcccc
Q 008294 169 --TLEVERALRVLDGAICLFDSVAGV-----EP-QSE-TVWRQAD----------KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 --~~~~~~~l~~~D~~ilVvda~~g~-----~~-~~~-~~~~~~~----------~~~~p~ivviNK~D~~~~ 222 (571)
.......++.+|++++|+|+.+.. .. ... .....+. ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 234556788899999999998763 11 111 1222221 147999999999998643
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-15 Score=139.26 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|..|+|||||+++++. +.... .+.+ ..+... .....+......++||||||+.+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~-----------~~~~---t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ-----------VYEP---TVFENY-VHDIFVDGLHIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------ccCC---cceeee-EEEEEECCEEEEEEEEECCCChhccc
Confidence 4799999999999999999972 21110 0000 001111 01112222346799999999999877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
....+++.+|++|+|+|..+....+... .| ..+.. .++|+++|+||+|+...
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 7777889999999999998754444332 22 33333 37899999999998654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=140.78 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=79.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|+.|+|||||+++|+........ . ...|.+.......+......+++|||||+..|
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~--------------~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~ 68 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--D--------------LTIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--C--------------CCccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 3578999999999999999999732111000 0 01122222222333223456889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++|+|+|+++....+....|. .+. ..++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 888888999999999999998754444332332 222 23689999999999754
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=134.22 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=74.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++. +..... + ....|.........+......+.+|||||+.+|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~~-----------~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHSS-----------H---ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCCC-----------C---CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 689999999999999999972 211100 0 000121222222222222367899999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+.-.......| ..+. ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88899999999999999864333333222 2222 23689999999999754
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=136.74 Aligned_cols=114 Identities=15% Similarity=0.014 Sum_probs=74.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|+...-....... ..........+......+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPT-----------------VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------eeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 6899999999999999999732110000000 00001111122234567999999999988666
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHh--cCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 66677899999999999864333222 22233332 36999999999998654
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=141.51 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~f~ 169 (571)
.+|+++|..|+|||||+++|+... ...... ...|.......+.+. .....+++|||||+..|.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~~~~--------------~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAEVSD--------------PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCC--------------ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 689999999999999999997321 111000 001111111111111 123679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|.++.........| ..+. ....|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 8888899999999999999874332222222 2222 23467788999999754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=138.26 Aligned_cols=114 Identities=15% Similarity=0.057 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.+++.... .. .+.+ .-|.... ....+......++||||||+.+|..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f--~~-----------~~~~---t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF--PK-----------EYIP---TVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--Cc-----------CCCC---ceEeeeE-EEEEECCEEEEEEEEECCCchhhhh
Confidence 5799999999999999999973221 10 0000 0011111 1112222346789999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-ADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++........ .|.. +.. .++|+++|.||.|+..
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 8888999999999999998755444432 3432 222 4789999999999854
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=136.10 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.+++... ... ++.+. .+... .....+......++||||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~-----------~~~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG-----------EYIPT---VFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC-----------cCCCc---ceeee-EEEEEECCEEEEEEEEECCCchhhhh
Confidence 478999999999999999997321 110 00000 00000 01112222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 888889999999999999875444443 223 22222 3689999999999854
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-15 Score=133.75 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..++|||||+-++..... ... .|..-|..+-...+.+.....++.||||+|+++|.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F--~e~--------------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF--HEN--------------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc--ccc--------------cccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 46899999999999999999973221 110 12223333333334443345788899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCC---eEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVP---RICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p---~ivviNK~D~~~ 221 (571)
+..-.++|.|+++|+|+|.++.-..+....| ..+.+..-| +.+|.||+|+..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 9999999999999999999986666665555 334333223 345799999865
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=136.23 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..++|||+|+.+++. +.... ++.+ .-|.+.. ....+......++||||+|+.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~-----------~~~~---Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPT-----------DYIP---TVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCC-----------CCCC---cceeeeE-EEEEECCEEEEEEEEECCCCccccc
Confidence 4799999999999999999983 21111 0000 0011111 1122222347889999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....+.. ..| ..++. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 888899999999999999876555443 233 33332 3789999999999854
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=135.83 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=72.8
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEV 172 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 172 (571)
|+++|..|+|||||+++++.......... + .+ ........+......+.+|||||+.+|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-----~-----------~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-----T-----------VF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-----c-----------EE-eeeeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 57999999999999999973221100000 0 00 0001111122233568999999999988877
Q ss_pred HHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 173 ERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 173 ~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
...++.+|++|+|+|.++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 7788999999999999865333322 122 23332 3799999999999864
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=152.22 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=77.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~ 167 (571)
..+.|+++|.+|+|||||+|+|. +..... . ...+.|++.....+.+.+ ..+.||||||+.+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt---~~~~~v-~--------------~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRIT---EARVYA-A--------------DQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCceee-c--------------cCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 34789999999999999999996 221111 0 112345555545555544 3889999999854
Q ss_pred c--------HHHHHHHHHhcCeEEEEEeCCCCCchhHH----HHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 F--------TLEVERALRVLDGAICLFDSVAGVEPQSE----TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f--------~~~~~~~l~~~D~~ilVvda~~g~~~~~~----~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. ...+...++.+|++++|+|+++....... ..+..+...++|+++|+||+|+..
T Consensus 258 ~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 258 HLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 2 11234556889999999999886543332 233444445799999999999853
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=161.36 Aligned_cols=105 Identities=24% Similarity=0.288 Sum_probs=78.0
Q ss_pred cCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH-----
Q 008294 97 AHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE----- 171 (571)
Q Consensus 97 G~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~----- 171 (571)
|.+|+|||||+|+|. |.....+. .+|+|++.....+.+++..+++|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Lt---g~~~~v~n---------------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALT---GANQTVGN---------------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHh---CCCCeecC---------------CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH
Confidence 899999999999995 32222211 2578888888888888899999999999887432
Q ss_pred HHH-HH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 172 VER-AL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~-~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+.+ .+ ..+|++++|+|+++. ........++.+.++|+++|+||+|+..
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 122 22 368999999999873 2334445566678999999999999753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=135.79 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|+.|+|||||+++++.......... + .+... .....+......+.+|||||+.+|..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~------t----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP------T----------VFENY-VADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC------c----------cccce-EEEEEECCEEEEEEEEeCCCchhhhh
Confidence 5799999999999999999973211100000 0 00011 11122222345789999999998877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+....... ..| ..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 666788899999999999754322222 222 22222 3789999999999864
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-15 Score=123.41 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=74.7
Q ss_pred eEEEEEEEeecC-CCceEEEEEEecceeCCCCEEEeCC---------CCceeecceEEEeccCceeecCeecCCCEEEEe
Q 008294 390 FAGLAFKIMSDP-FVGSLTFVRVYAGTLSAGSYVLNAN---------KGKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (571)
Q Consensus 390 ~~~~V~k~~~d~-~~G~i~~~rV~sG~l~~gd~v~~~~---------~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~ 459 (571)
++++|||+..++ +.|+++++|||+|+|+.||.|++.. ....+++++|+.++|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8999999999999999999998765 344588999999999999999999999999999
Q ss_pred CCCCccccceec
Q 008294 460 GLKDTITGETLC 471 (571)
Q Consensus 460 gl~~~~~Gdtl~ 471 (571)
|++++..||+.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998753
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=134.19 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..++|||||+.+++.... .. ++.+ ..+.... ....+......+.||||+|+..|.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~-----------~~~p---T~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~ 67 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PE-----------NYVP---TVFENYT-ASFEIDTQRIELSLWDTSGSPYYD 67 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CC-----------ccCC---ceeeeeE-EEEEECCEEEEEEEEECCCchhhH
Confidence 46799999999999999999973221 10 0000 0011111 112222234679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~ 220 (571)
.....+++.+|++|+|+|.++....... ..| ..++. .+.|+++|.||+|+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 8888889999999999999876554443 334 23332 268999999999974
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=133.26 Aligned_cols=113 Identities=15% Similarity=0.032 Sum_probs=74.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+++++|..|+|||||+.+++.... .. ++.+ .+.........+......+.+|||||+.+|...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~-----------~~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PT-----------EYVP----TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCCC----ceeeeeeEEEEECCEEEEEEEEECCCChhhccc
Confidence 689999999999999999973211 00 0000 010111111222223467889999999998877
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHh--cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~ 221 (571)
...+++.+|++|+|+|..+....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 77788999999999999875443332 22333333 3689999999999853
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=121.04 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred eEEEEEEEeecCCC-ceEEEEEEecceeCCCCEEEeCCC---------CceeecceEEEeccCceeecCeecCCCEEEEe
Q 008294 390 FAGLAFKIMSDPFV-GSLTFVRVYAGTLSAGSYVLNANK---------GKKERIGRLLEMHANSREDVKVALAGDIIALA 459 (571)
Q Consensus 390 ~~~~V~k~~~d~~~-G~i~~~rV~sG~l~~gd~v~~~~~---------~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~ 459 (571)
++++|||+..+|+. |+++++|||||+|++||.|++... ...++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 679999999999999999986321 13578999999999999999999999999999
Q ss_pred CCCCccccce
Q 008294 460 GLKDTITGET 469 (571)
Q Consensus 460 gl~~~~~Gdt 469 (571)
|+++..++.+
T Consensus 81 gl~~~~~~~~ 90 (94)
T cd04090 81 GIDSSIVKTA 90 (94)
T ss_pred CcchheeceE
Confidence 9998665444
|
This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=132.09 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++.... .. ++.+. .+.... ....+......+++|||+|+..|..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~-----------~~~~t---~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PE-----------TYVPT---VFENYT-ASFEIDEQRIELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CC-----------CcCCc---eEEEEE-EEEEECCEEEEEEEEECCCchhhhh
Confidence 3699999999999999999973211 00 00000 011110 1122222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....... ..| ..+++ .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 778889999999999999876554442 334 23332 3789999999999853
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-14 Score=137.14 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=70.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++++ .+..... .+.+ ..+.........+......+++|||||+..+..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~--~~~~~~~----------~~~~---t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~- 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDDH----------AYDA---SGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE- 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHh--cCCcCcc----------CcCC---CccccceEEEEEECCEEEEEEEEeCCCcchHHH-
Confidence 68999999999999999996 2211100 0000 001011112222333457899999999984322
Q ss_pred HHHHHH-hcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 172 VERALR-VLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~-~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
...++ .+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 66 -~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 66 -DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred -hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 33455 89999999999875433322 22333333 4689999999999754
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=127.86 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=74.5
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc----
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF---- 168 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f---- 168 (571)
|+++|++|+|||||++.|+..... ... +...+.|...... .++ ..+.+|||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~~---------------~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-ART---------------SKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-eee---------------cCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCH
Confidence 789999999999999999621111 000 0112333332222 222 38999999998663
Q ss_pred ------HHHHHHHHH---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 ------TLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ------~~~~~~~l~---~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+...+. .++++++|+|..........+.++.+...+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222223333 35789999999887777777788888888999999999999854
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=136.01 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=77.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||+|+.+++.... .. ++.+ ..|..... ...+......+.||||+|+.+|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~-----------~y~p---Ti~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PE-----------TYVP---TVFENYTA-GLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CC-----------CcCC---ceeeeeEE-EEEECCEEEEEEEEeCCCchhhH
Confidence 45799999999999999999973211 10 0000 00111111 12222345679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|.++...... ...| ..+.. .++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 888889999999999999987655443 2333 33332 3689999999999743
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=126.98 Aligned_cols=97 Identities=23% Similarity=0.194 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC----CC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----HV 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG----~~ 166 (571)
++|.+||.+|+|||||+++|. |..... .-|... . +.=++||||| +.
T Consensus 2 krimliG~~g~GKTTL~q~L~---~~~~~~-------------------~KTq~i-----~---~~~~~IDTPGEyiE~~ 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN---GEEIRY-------------------KKTQAI-----E---YYDNTIDTPGEYIENP 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc---CCCCCc-------------------Ccccee-----E---ecccEEECChhheeCH
Confidence 579999999999999999995 211000 011111 1 1225699999 33
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.|..........||.+++|.|+++.... .--..+..++.|+|-||||+|+.
T Consensus 52 ~~y~aLi~ta~dad~V~ll~dat~~~~~---~pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 52 RFYHALIVTAQDADVVLLLQDATEPRSV---FPPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHHHHhhCCEEEEEecCCCCCcc---CCchhhcccCCCEEEEEECccCc
Confidence 4666677777899999999999875332 11234556789999999999998
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=125.62 Aligned_cols=109 Identities=23% Similarity=0.202 Sum_probs=76.2
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeE-eeceEEEe--ecCeEEEEEcCCCCCCcHHH
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI-TSAATTTY--WNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~-~~~~~~~~--~~~~~i~liDTPG~~~f~~~ 171 (571)
++|++|+|||||+++|......... ...|. ......+. ..+..+.+|||||+.++...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 61 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-------------------YETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL 61 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-------------------cccchhheeeEEEEECCEEEEEEEEecCChHHHHhH
Confidence 5899999999999999732221000 00111 11111111 23678999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++|+|+.++........+ ......++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 88889999999999999987655554433 3344568999999999998653
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=121.97 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=89.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|.+||.+|+|||+|+-+++.++....... .-|+.+......+..+..++.||||+|+++|.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~----------------tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPT----------------TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCc----------------eeeeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 47899999999999999999974333211111 13666777777777778899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~----~~~p~ivviNK~D~~~ 221 (571)
..+..++|.|.++|+|+|.+...+....++|.. +.. .++-.++|.||+|+..
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 999999999999999999997666666677743 222 2455678999999653
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=132.50 Aligned_cols=114 Identities=16% Similarity=0.083 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+.++..... .. ++.+. .+.... ....+......+.||||+|+..|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~-----------~y~pT---i~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PG-----------SYVPT---VFENYT-ASFEIDKRRIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC-----------ccCCc---cccceE-EEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4789999999999999999973211 10 00000 011111 1112222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHH-HHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~--~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++|+|+|.++....... ..|.. ... .++|+++|+||+|+..
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 888899999999999999876444333 33432 222 4789999999999854
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=124.31 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..++.++|..|+|||.|+-++......... + -.-|+......+++..+..++++|||.||+.|.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~h-----d-----------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr 69 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVH-----D-----------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR 69 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccc-----c-----------ceeeeeeceeEEEEcCceEEEEEEecCCcHHHH
Confidence 457889999999999999999733221111 1 113555555556666677889999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
..+..+++.+-++|||+|.+..........| ..+++ .++-++++.||+|+...
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 9999999999999999999876555555554 33333 35667888999998653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=130.55 Aligned_cols=116 Identities=21% Similarity=0.159 Sum_probs=78.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|+.|+|||||+++++. |....... ...|..+.........+...+++|||+|+.+|
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~--~~~~~~~~--------------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLT--GEFEKKYI--------------PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHh--CCCCCCCC--------------CccceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 346899999999999999998762 22111000 01122222222222335678999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HH--hcCCCeEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-AD--KYGVPRICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~--~~~~p~ivviNK~D~~ 220 (571)
.......++.+|++++|+|.++.........|.. +. ..++|+++++||+|+.
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 8777788889999999999987665554443321 11 2478999999999974
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-13 Score=123.37 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=68.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+.+++. +..... +.+. .+ .. ...+.+......+.+|||+|+.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~--~~f~~~-----------~~~~---~~-~~-~~~i~~~~~~~~l~i~D~~g~~~---- 59 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLT--GSYVQL-----------ESPE---GG-RF-KKEVLVDGQSHLLLIRDEGGAPD---- 59 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHh--CCCCCC-----------CCCC---cc-ce-EEEEEECCEEEEEEEEECCCCCc----
Confidence 689999999999999999973 211100 0000 01 11 11122222236689999999975
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh----cCCCeEEEEecCCcc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~----~~~p~ivviNK~D~~ 220 (571)
...++.+|++++|+|.++....+.... +..+.. .++|+++|.||+|+.
T Consensus 60 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 60 -AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred -hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 245678999999999998666555333 333332 357999999999963
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=119.33 Aligned_cols=106 Identities=21% Similarity=0.308 Sum_probs=78.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
.|+++|.+|+|||||+|+|+ +... ..+. ..+.|.......+.+.+..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~---~~~~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT---GKKLAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH---TSTSSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHh---ccccccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence 48999999999999999997 2211 1111 1244555544555668889999999998652
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
.......+..+|++++|+|+.+........+++.++ .+.|+++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 63 QDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred hhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223555667889999999988855556677777776 88999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=133.30 Aligned_cols=119 Identities=20% Similarity=0.315 Sum_probs=85.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeE-EEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR-INIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-i~liDTPG 164 (571)
..+.+..|++||.+|||||||+++|. .+..+++.+. -+|+.....+..++++. +++-|.||
T Consensus 192 ELKsiadvGLVG~PNAGKSTLL~als---~AKpkVa~Ya---------------FTTL~P~iG~v~yddf~q~tVADiPG 253 (366)
T KOG1489|consen 192 ELKSIADVGLVGFPNAGKSTLLNALS---RAKPKVAHYA---------------FTTLRPHIGTVNYDDFSQITVADIPG 253 (366)
T ss_pred EeeeecccceecCCCCcHHHHHHHhh---ccCCcccccc---------------eeeeccccceeeccccceeEeccCcc
Confidence 34556789999999999999999995 4445555431 23666666666665554 99999999
Q ss_pred CCC-------cHHHHHHHHHhcCeEEEEEeCCCCC--c--hhHHHHHHHHHhc-----CCCeEEEEecCCcccc
Q 008294 165 HVD-------FTLEVERALRVLDGAICLFDSVAGV--E--PQSETVWRQADKY-----GVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~~~-------f~~~~~~~l~~~D~~ilVvda~~g~--~--~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 222 (571)
... ..-...+.+..++..++|||.+.+. . .+-..++..+..+ ..|.+||+||+|.+.+
T Consensus 254 iI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 254 IIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred ccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 765 2445677888899999999998762 2 2233344444433 5799999999998643
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=132.14 Aligned_cols=147 Identities=15% Similarity=0.239 Sum_probs=93.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f--- 168 (571)
+|+++|.+|+|||||+++|. |.....+.. .+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt---g~~~~v~~~---------------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVAAY---------------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCccccCC---------------CCccccceEEEEEECCeEEEEEECCCccccccc
Confidence 58999999999999999996 332221111 233555555566678899999999998643
Q ss_pred ----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC------CeE----------EEEecCCccccchhhhH
Q 008294 169 ----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------PRI----------CFVNKMDRLGANFFRTR 228 (571)
Q Consensus 169 ----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~------p~i----------vviNK~D~~~~~~~~~~ 228 (571)
..+....++.+|++++|+|+.+.. .+.......+...++ |.+ -+.++.|+...+. +.+
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~-~~v 141 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDE-KTI 141 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCH-HHH
Confidence 345667889999999999997633 244445566655443 221 2334666665543 455
Q ss_pred HHHHHHhCCcceeeeccCCCCCCcceeeeccc
Q 008294 229 DMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVK 260 (571)
Q Consensus 229 ~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~ 260 (571)
..+.+.++.+...+ -+..+-....++|.+.
T Consensus 142 ~~~l~~~~i~~~~v--~~~~~~~~~~~~~~~~ 171 (233)
T cd01896 142 KAILREYKIHNADV--LIREDITVDDLIDVIE 171 (233)
T ss_pred HHHHHHhCeeeEEE--EEccCCCHHHHHHHHh
Confidence 66777777765544 3344444455555544
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=119.75 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=86.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|.|+|..|+||||++++|+ +.... ++ .-|+.....++.++++.+++||..|+..
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~---~~~~~--------~i----------~pt~gf~Iktl~~~~~~L~iwDvGGq~~ 72 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLL---GEDTD--------TI----------SPTLGFQIKTLEYKGYTLNIWDVGGQKT 72 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhc---CCCcc--------cc----------CCccceeeEEEEecceEEEEEEcCCcch
Confidence 345689999999999999999996 21100 00 1155555667788999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHH----HHHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWR----QADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~----~~~~~~~p~ivviNK~D~~~~ 222 (571)
+..-+..++..+|+.|+|||+.+....+ +...+. .-+..+.|++++.||.|+.++
T Consensus 73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 9999999999999999999998654332 222222 223457899999999998754
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=125.86 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=91.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+...+|++||.+++|||-|+.++..+........ .-|+.+......++.+..+.+||||+|+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks----------------TIGvef~t~t~~vd~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS----------------TIGVEFATRTVNVDGKTVKAQIWDTAGQ 73 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCccccc----------------ceeEEEEeeceeecCcEEEEeeecccch
Confidence 345578899999999999999999963322211111 1355666666666666778899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
++|...+..+++.|-++++|+|.+...+......| ..++. .++++++|.||+|+..
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 99999999999999999999999877766665555 45554 3788999999999854
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=130.31 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~~~f 168 (571)
++|+++|++|+|||||+++|..... .. + +. .++.......+. ..+..+.|||||||.++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--~~-------t-~~---------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~ 61 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--RS-------T-VT---------SIEPNVATFILNSEGKGKKFRLVDVPGHPKL 61 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--CC-------c-cC---------cEeecceEEEeecCCCCceEEEEECCCCHHH
Confidence 4799999999999999999973211 00 0 00 001111111111 24678999999999999
Q ss_pred HHHHHHHHHhc-CeEEEEEeCCCCCch--hHHHHHH----HHH--hcCCCeEEEEecCCccccc
Q 008294 169 TLEVERALRVL-DGAICLFDSVAGVEP--QSETVWR----QAD--KYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 169 ~~~~~~~l~~~-D~~ilVvda~~g~~~--~~~~~~~----~~~--~~~~p~ivviNK~D~~~~~ 223 (571)
.......++.+ +++|+|+|+...... ...+.+. ... ..++|+++|+||+|+..+.
T Consensus 62 ~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 62 RDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 99999999998 999999999875311 1112221 111 2489999999999997654
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=127.45 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=48.7
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
....++||||+|+.+. ....+++.+|++|+|+|.++........ .| ..++. .++|+++|+||+|+..
T Consensus 64 ~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 3578999999999763 2344678999999999998765544332 34 33332 3689999999999854
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=123.94 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=82.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|.++|.+|+|||+|+|++.+.......... -|..+-...+.+...-..++||||+|+++|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----------------IgadFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----------------IGADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----------------cchhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 3578999999999999999999844321111000 122222223333334467899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH--HHHh------cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR--QADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~--~~~~------~~~p~ivviNK~D~~~ 221 (571)
...-...+|.+|.+++|+|....-.....+.|+ .+.. ...|+||+.||+|..+
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 999899999999999999998765555555553 2222 2568999999999865
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-13 Score=122.46 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=77.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..++|||||+++|..... .. ++. ...|................+.|||++|+.+|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--PE-----------NYI---PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--TS-----------SSE---TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--cc-----------ccc---ccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999973221 10 000 01123333333333334567999999999999888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++|+|+|.++.........|. .+. ..+.|++++.||.|+..
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 888899999999999998644333333332 222 22578999999999764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=117.45 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
..+.++|..++|||||+|... +|...+ .-+-|+......+..++..+.+||.||+..|..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia--~g~~~e------------------dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIA--RGQYLE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred eeEEEEeeccCCcceEEEEEe--eccchh------------------hhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 478899999999999999875 221111 012244445555666788999999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCC--chhHHHHHHHHH---hcCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGV--EPQSETVWRQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~--~~~~~~~~~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
.+.++.+.++++++||||.+.- +..-.++...+. -.++|+++..||+|++++
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 9999999999999999998632 222223333333 358999999999999876
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=114.72 Aligned_cols=117 Identities=18% Similarity=0.089 Sum_probs=86.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..++.|+|...+|||+|+-+.+.......-.. .-|+......+.-..+..++++|||.|++.+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvs----------------TvGidFKvKTvyr~~kRiklQiwDTagqEryr 84 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----------------TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR 84 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceee----------------eeeeeEEEeEeeecccEEEEEEEecccchhhh
Confidence 45899999999999999998863322211111 12555555443333355789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
..+-.++|.++++|+++|.++.......+-|.... ..+.|+|+|.||+|+...
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 99999999999999999999866655555554332 348999999999998654
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=125.90 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|.. +....... .+. +... .....+......+++|||||+.+|..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~~~----~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEEYH----PTV----------FENY-VTDCRVDGKPVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcccC----Ccc----------cceE-EEEEEECCEEEEEEEEECCCChhccc
Confidence 4799999999999999999962 21111000 000 0000 01111221235688999999988765
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|........... .| ..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 5455678899999999997643333221 23 33322 3689999999999753
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-13 Score=122.50 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+.-.+|.++|--+|||||++..|- .+.+... --|+....-.+.+++.++++||..|+..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk--~~E~vtt-------------------vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLK--LGEIVTT-------------------VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeec--cCCcccC-------------------CCccccceeEEEEcceEEEEEecCCCcc
Confidence 445689999999999999999883 2211111 1166666777788899999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCC--chhHHHHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
+..-+..+++..+++|+|||+++.. ...-.++.+.+.. .+.|++++.||.|++++
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 9999999999999999999998642 2333344444443 37899999999998875
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=125.80 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT- 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~- 169 (571)
++|+++|.+|+|||||+|+|+....... .....++|.........+.+.++++|||||..+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES----------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc----------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 4799999999999999999972211100 01124667777777777899999999999988752
Q ss_pred ------HHHHHHH----HhcCeEEEEEeCCCCCchhHHHHHHHHHhc-C----CCeEEEEecCCccc
Q 008294 170 ------LEVERAL----RVLDGAICLFDSVAGVEPQSETVWRQADKY-G----VPRICFVNKMDRLG 221 (571)
Q Consensus 170 ------~~~~~~l----~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~ 221 (571)
.++.+.+ ...|++++|+|+.. +.......++.+.+. + .++++++|+.|...
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 2222222 34699999999987 777777777777653 2 57889999999764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=125.72 Aligned_cols=118 Identities=21% Similarity=0.195 Sum_probs=82.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...||.++|.+|+|||||+|+|+.... .....+..|+ .+. ......+++..++||||||+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~t--------------~~~-~~~~~~~~~~~l~lwDtPG~g 98 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGT--------------DIT-TRLRLSYDGENLVLWDTPGLG 98 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccC--ceeeecccCC--------------Cch-hhHHhhccccceEEecCCCcc
Confidence 44567888999999999999999983222 1111111111 000 011112355789999999998
Q ss_pred C-------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 167 D-------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~-------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
| +.......+...|++++++|+.+.....++..++..... +.++++++|.+|+..
T Consensus 99 dg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 99 DGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred cchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhc
Confidence 8 555577788899999999999988777788887766543 479999999999754
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=130.98 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=81.5
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTP 163 (571)
.....++.|+++|.+|||||||+|+|. +..... +...-.|.+...-.+.+. +..+.+-||-
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~~---------------~d~LFATLdpttR~~~l~~g~~vlLtDTV 248 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALT---GADVYV---------------ADQLFATLDPTTRRIELGDGRKVLLTDTV 248 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHh---ccCeec---------------cccccccccCceeEEEeCCCceEEEecCc
Confidence 344568999999999999999999995 221110 001122555555555555 6899999999
Q ss_pred CCCCc--------HHHHHHHHHhcCeEEEEEeCCCCCc-hhHHHHHHHHH---hcCCCeEEEEecCCcccc
Q 008294 164 GHVDF--------TLEVERALRVLDGAICLFDSVAGVE-PQSETVWRQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 164 G~~~f--------~~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
|+.+- ...+......+|++++|||+++..- .+.......+. ...+|+++|.||+|+...
T Consensus 249 GFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 249 GFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred cCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 98762 2334555677899999999998632 22223333333 357899999999997643
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=123.09 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~ 169 (571)
.+|+++|.+|+|||||+|+|+.... ...+....+ . ..+|.... .+.. ....+.+|||||+.+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~--~~~~~~~~~-----~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH--EEEGAAPTG-----V------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC--CCCCccccC-----c------cccccCce--eeecCCCCCceEEeCCCCCccc
Confidence 4799999999999999999972110 001111111 0 00111111 1111 13478999999987542
Q ss_pred HHHHH-----HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 LEVER-----ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~-----~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..... .+..+|++++|.| ..+.......+..+...+.|+++|+||+|+..
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 22222 2456788888754 35677777788888888999999999999843
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=138.30 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCCC-----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~-----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~ivviNK~D~~~ 221 (571)
..++.|+||||... +...+..++..+|.+++|+|+..+....++.+++.+++.+ .|+++|+||+|+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 46899999999754 3445677899999999999999888888888888888877 49999999999753
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=112.55 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=86.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
-..++.++|+.|.|||.|+.+++.......... .-|+.+....++...+..+++||||+|+++|
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssH----------------TiGveFgSrIinVGgK~vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSH----------------TIGVEFGSRIVNVGGKTVKLQIWDTAGQERF 71 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccc----------------eeeeeecceeeeecCcEEEEEEeecccHHHH
Confidence 356889999999999999999985433221111 1255555555555556788999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~~ 222 (571)
...+..+++.|-++++|.|++..........|. .++ ..++-++++.||-|+...
T Consensus 72 RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 999999999999999999998765555544442 233 345556777899998654
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=126.30 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=82.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
..++|+|.|++|+|||||++++. ++.....+. +-+|-.....+++.+..++++|||||.-|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT---~AkpEvA~Y---------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT---TAKPEVAPY---------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh---cCCCccCCC---------------CccccceeEeeeecCCceEEEecCCcccCC
Confidence 57999999999999999999994 544443332 12366667778888899999999999766
Q ss_pred -------cHHHHHHHHHh-cCeEEEEEeCCC--CCchhHH-HHHHHHH-hcCCCeEEEEecCCcccc
Q 008294 168 -------FTLEVERALRV-LDGAICLFDSVA--GVEPQSE-TVWRQAD-KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -------f~~~~~~~l~~-~D~~ilVvda~~--g~~~~~~-~~~~~~~-~~~~p~ivviNK~D~~~~ 222 (571)
...+...|++. .+++++++|+++ |...... .+|+..+ .++.|+++|+||+|....
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 23445556654 478899999984 4433222 2334443 456899999999998753
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=121.15 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=79.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-----ecCeEEEEEcCCCCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-----WNKHRINIIDTPGHV 166 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~i~liDTPG~~ 166 (571)
+|+++|..++|||||+++++.... ... + ...-|.++......+. ...+.++||||+|+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--~~~-----------~---~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--LGR-----------P---SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCC-----------C---CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 689999999999999999973211 000 0 0011222322222221 134679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHh----------------------cCCCeEEEEecCCcccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADK----------------------YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----------------------~~~p~ivviNK~D~~~~ 222 (571)
+|.......++.+|++|+|+|.++.........|. .+.. .++|+++|.||+|+...
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99888888999999999999999876555554442 2221 36899999999998653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=111.00 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
....|+|.+|+|||+|+-++...+.....+.. -|+......+.+......+.||||+|++.|..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitT----------------iGvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITT----------------IGVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEE----------------eeeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 35679999999999999999744332222111 24445555555555667899999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc---CCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~~p~ivviNK~D~~~~ 222 (571)
.+..+++..+++++|+|.+.|.......-|..-.+. .+|-++|.||.|.++.
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 999999999999999999998877776666444433 4677899999998754
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=123.46 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCcH---HH---HHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCCeEEEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFT---LE---VERALRV--LDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~---~~---~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~ivviNK~D~~ 220 (571)
+..+.+|||||+.++. .. ..+.+.. ++++++|+|+..+....+......+. ..++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3479999999987742 22 2333433 79999999998877766654443332 5789999999999987
Q ss_pred cc
Q 008294 221 GA 222 (571)
Q Consensus 221 ~~ 222 (571)
..
T Consensus 176 ~~ 177 (253)
T PRK13768 176 SE 177 (253)
T ss_pred Cc
Confidence 64
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-12 Score=109.23 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=84.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+-..+|+++|..|+|||.|+.++. .| -..+|... .-|+.+-...+.+..+..++++|||+|+++
T Consensus 5 kflfkivlvgnagvgktclvrrft--qg------lfppgqga--------tigvdfmiktvev~gekiklqiwdtagqer 68 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QG------LFPPGQGA--------TIGVDFMIKTVEVNGEKIKLQIWDTAGQER 68 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--cc------CCCCCCCc--------eeeeeEEEEEEEECCeEEEEEEeeccchHH
Confidence 345789999999999999999996 22 22222200 013333344444445678899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.|+.+|+|.|.+.........-| +... ...+-.|+|.||+|+.+.
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 999999999999999999999976654443322 2332 234556889999998543
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=126.67 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee------------
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW------------ 152 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~------------ 152 (571)
.+.....+|+++|..|+|||||+++|+.... ... ....-|.++....+.+..
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F--~~~--------------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~ 79 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS--IAR--------------PPQTIGCTVGVKHITYGSPGSSSNSIKGDS 79 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCc--ccc--------------cCCceeeeEEEEEEEECCcccccccccccC
Confidence 3444567899999999999999999972211 000 000112233222222211
Q ss_pred -cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc---------------CCCeEEEEe
Q 008294 153 -NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---------------GVPRICFVN 215 (571)
Q Consensus 153 -~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---------------~~p~ivviN 215 (571)
....++||||+|+..|.......++.+|++|+|+|.++.........| ..+... ++|++||.|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 236799999999999999889999999999999999875444333333 233321 479999999
Q ss_pred cCCcccc
Q 008294 216 KMDRLGA 222 (571)
Q Consensus 216 K~D~~~~ 222 (571)
|+|+...
T Consensus 160 K~DL~~~ 166 (334)
T PLN00023 160 KADIAPK 166 (334)
T ss_pred Ccccccc
Confidence 9998653
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=124.06 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|++|+|||||+|+|+...-. ...+... .........+++......+..++ .++++|||||+.+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~-~~~~~~~-------~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLI-PSDYPPD-------PAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCc-cccCCCC-------ccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 468999999999999999999722111 1001000 00011222334444444455555 5799999999877
Q ss_pred cHHH---------------------HHHHHH-------hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 168 FTLE---------------------VERALR-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 168 f~~~---------------------~~~~l~-------~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
+... .....+ .+|++++++++. +++...+.+.++.+.. ++|+++|+||+|
T Consensus 76 ~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D 154 (276)
T cd01850 76 NINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKAD 154 (276)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCC
Confidence 5321 111112 368899999887 5788888888888875 799999999999
Q ss_pred ccccc-hhhhHHHHHHHhCC
Q 008294 219 RLGAN-FFRTRDMIVTNLGA 237 (571)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~ 237 (571)
+...+ .....+.+++.+..
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~ 174 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEE 174 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 96532 33445555555533
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-12 Score=129.00 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+|+|.+|+|||||+|+|.... ..+.+ ...|+|.+.....++.+++.+.|+||+|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d---rsIVS--------------pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED---RSIVS--------------PVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC---ceEeC--------------CCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 345899999999999999999997322 22222 2357789988889999999999999999866
Q ss_pred c---------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC------------CeEEEEecCCcc
Q 008294 168 F---------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV------------PRICFVNKMDRL 220 (571)
Q Consensus 168 f---------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~------------p~ivviNK~D~~ 220 (571)
- ......++..+|++++|+|+.++...+...+.+.+...+. |.+++.||+|+.
T Consensus 329 ~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 329 ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 1 3335667889999999999998888887777776665443 455566666653
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-12 Score=117.53 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=67.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---cCeEEEEEcCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---NKHRINIIDTPGHV 166 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i~liDTPG~~ 166 (571)
.+.|.++|+.|+|||+|+..|.+... .. . + +++ .....+.. .+..+.+||+|||.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~~--T------~-----------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT--VP--T------V-----------TSM-ENNIAYNVNNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B--------------------S-SEEEECCGSSTCGTCECEEEETT-H
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc--CC--e------e-----------ccc-cCCceEEeecCCCCEEEEEECCCcH
Confidence 46899999999999999999984311 10 0 0 011 11111111 45679999999999
Q ss_pred CcHHHHHHH---HHhcCeEEEEEeCCCCCchhHHHHHHH----H---H--hcCCCeEEEEecCCccccch
Q 008294 167 DFTLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQ----A---D--KYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 167 ~f~~~~~~~---l~~~D~~ilVvda~~g~~~~~~~~~~~----~---~--~~~~p~ivviNK~D~~~~~~ 224 (571)
+........ +..+.++|+|||+.. ....-.+..+. + . ...+|++|+.||.|+..+..
T Consensus 61 rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 61 RLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp CCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred HHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 988777765 888999999999974 22222222221 1 1 35789999999999987653
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=113.78 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=82.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..=+|||+|+-+++.+...-.....+ .-++.....+++.....++||||+|+++|.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl----------------QASF~~kk~n~ed~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL----------------QASFQNKKVNVEDCRADLHIWDTAGQERFH 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH----------------HHHHhhcccccccceeeeeeeeccchHhhh
Confidence 4689999999999999999997433221111110 001222223333445679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..---+++.+|++++|+|.++....|....| +.+....+..+||.||+|+...
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 7777789999999999999987777766655 2333446778899999998643
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-12 Score=111.77 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=72.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+..... +........+.++......+......+.+||++|+..+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 5899999999999999999833221 00001111223333333344444456999999999887766
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhH-HHH---HHHHHh--cCCCeEEEEecCC
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQS-ETV---WRQADK--YGVPRICFVNKMD 218 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~-~~~---~~~~~~--~~~p~ivviNK~D 218 (571)
....+..+|++++|+|.++...... .++ +..... .++|+++|.||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6666999999999999986432222 122 122222 4699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=116.80 Aligned_cols=137 Identities=17% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee---eeec-------C-----cccccchhhhhhhceeEeeceEEEe
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG---EVHE-------G-----TATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g---~~~~-------g-----~~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
.++...|.++|..|+||||++.+|....+...... .+++ + ..+.+|.+..++.+.--+-+..++-
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34556889999999999999999974433222111 1111 0 1234555555554433322222211
Q ss_pred -----------------ecCeEEEEEcCCCCCCc------HHHHHHHHHhc--CeEEEEEeCCCCCchhH-----HHHHH
Q 008294 152 -----------------WNKHRINIIDTPGHVDF------TLEVERALRVL--DGAICLFDSVAGVEPQS-----ETVWR 201 (571)
Q Consensus 152 -----------------~~~~~i~liDTPG~~~f------~~~~~~~l~~~--D~~ilVvda~~g~~~~~-----~~~~~ 201 (571)
....++.||||||+.+. ......++... -+++.|||....-.+.| .....
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 03467999999999872 11222333332 46778898865443333 34456
Q ss_pred HHHhcCCCeEEEEecCCccccc
Q 008294 202 QADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 202 ~~~~~~~p~ivviNK~D~~~~~ 223 (571)
++.+..+|.|+|.||+|..+..
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HHHhccCCeEEEEecccccccH
Confidence 7788899999999999987754
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=121.97 Aligned_cols=117 Identities=22% Similarity=0.254 Sum_probs=81.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~ 165 (571)
.+-+-.|++||.||+|||||++++. .+..+++.+ + -+|+......+. ..+..+.+-|.||.
T Consensus 156 LKllADVGLVG~PNaGKSTlls~vS---~AkPKIadY-p--------------FTTL~PnLGvV~~~~~~sfv~ADIPGL 217 (369)
T COG0536 156 LKLLADVGLVGLPNAGKSTLLSAVS---AAKPKIADY-P--------------FTTLVPNLGVVRVDGGESFVVADIPGL 217 (369)
T ss_pred EeeecccccccCCCCcHHHHHHHHh---hcCCcccCC-c--------------cccccCcccEEEecCCCcEEEecCccc
Confidence 3445678999999999999999994 555555442 1 124444444333 35677999999998
Q ss_pred CC-------cHHHHHHHHHhcCeEEEEEeCCCCC----chhHHHHHHHHHhc-----CCCeEEEEecCCccc
Q 008294 166 VD-------FTLEVERALRVLDGAICLFDSVAGV----EPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~-------f~~~~~~~l~~~D~~ilVvda~~g~----~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (571)
.+ ..-...+.+..+.+.++|||.+..- ...-..+...+.++ +.|.++|+||+|+..
T Consensus 218 IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 218 IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 76 3445677888889999999998432 22233344555543 789999999999654
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=101.01 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-..|..+|-.++||||++-.|. .+...... -|+..+.-+..+++..+|+||..|+.+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLk--l~~~~~~i-------------------pTvGFnvetVtykN~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLK--LGQSVTTI-------------------PTVGFNVETVTYKNVKFNVWDVGGQDKIR 75 (180)
T ss_pred cceEEEEecccCCceehhhHHh--cCCCcccc-------------------cccceeEEEEEeeeeEEeeeeccCchhhh
Confidence 3578899999999999999996 22111100 13344445566789999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCC--CchhHHHHHHHHH---hcCCCeEEEEecCCccccchhhhHHHHHHHhC
Q 008294 170 LEVERALRVLDGAICLFDSVAG--VEPQSETVWRQAD---KYGVPRICFVNKMDRLGANFFRTRDMIVTNLG 236 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g--~~~~~~~~~~~~~---~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 236 (571)
.-+.+++....++|||+|+.+. ++..-.++.+.+. ....+++|..||-|++.+. -.++|++.|+
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~le 144 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLE 144 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhc
Confidence 9999999999999999999864 2222223333332 2467888999999998764 2344444443
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=119.34 Aligned_cols=140 Identities=17% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-----cc-cchhhh---hhhceeEeeceEEE-----
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-----TM-DWMEQE---QERGITITSAATTT----- 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-----~~-d~~~~e---~~~g~t~~~~~~~~----- 150 (571)
.+...|+|+|.+|+|||||+++|.... |.....-..++... .+ |....+ ...++-+.......
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 456789999999999999999986332 22222222333222 11 221111 11222222211111
Q ss_pred -----------eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 151 -----------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 151 -----------~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
...++.+.||||+|...-... ....+|.+++|++...|..-|.... ....+..++|+||+|+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl 206 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADG 206 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcc
Confidence 124789999999998843222 5678999999987554443333211 0112234899999998
Q ss_pred cccc-hhhhHHHHHHH
Q 008294 220 LGAN-FFRTRDMIVTN 234 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~ 234 (571)
.... ..+...++++.
T Consensus 207 ~~~~~a~~~~~el~~~ 222 (332)
T PRK09435 207 DNKTAARRAAAEYRSA 222 (332)
T ss_pred cchhHHHHHHHHHHHH
Confidence 7543 23334444443
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=118.56 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=51.4
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec--------------eEEE--eecCeE
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA--------------ATTT--YWNKHR 156 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~--------------~~~~--~~~~~~ 156 (571)
|+++|.+|+|||||+|+|. +.....+. .++++. +...|+..... ...+ .+....
T Consensus 1 i~ivG~pnvGKStLfn~lt---~~~~~~~~-~pftT~------~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~ 70 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT---LADVEIAN-YPFTTI------DPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVP 70 (318)
T ss_pred CEEECCCCCCHHHHHHHHh---CCCCcccC-CCCccc------cceeEEEEEecCCCchhhhhhhcccccccccCcCcce
Confidence 5899999999999999996 22221111 111111 00111111000 0000 013357
Q ss_pred EEEEcCCCCC----CcH---HHHHHHHHhcCeEEEEEeCCC
Q 008294 157 INIIDTPGHV----DFT---LEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 157 i~liDTPG~~----~f~---~~~~~~l~~~D~~ilVvda~~ 190 (571)
+++|||||.. .+. ......++.+|++++|||+..
T Consensus 71 i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 71 VELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999999983 232 345667999999999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=112.04 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee--cCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~liDTPG~~~f 168 (571)
.+|+++|..|+|||||+++|......... ...+........... ....+.+|||+|+.+|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY------------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC------------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH
Confidence 78999999999999999999732211000 001111111111111 1467999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCC--CCchhHHHHHHHHHhc---CCCeEEEEecCCccccc
Q 008294 169 TLEVERALRVLDGAICLFDSVA--GVEPQSETVWRQADKY---GVPRICFVNKMDRLGAN 223 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~--g~~~~~~~~~~~~~~~---~~p~ivviNK~D~~~~~ 223 (571)
...+..+.+.++++++|+|... ............+... +.|+++|.||+|+....
T Consensus 68 ~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 68 RSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 9999999999999999999985 2223333333344443 58999999999997653
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=108.58 Aligned_cols=120 Identities=19% Similarity=0.120 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-..|.|+|.-++|||||+.++=.... ..-+.. .+. +--.|+.....+.+..+..+.+||.-|+....
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~--~~~~~l---------~~~--ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFS--KAYGGL---------NPS--KITPTVGLNIGTIEVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHH--hhhcCC---------CHH--HeecccceeecceeeccceeEEEEcCChHHHH
Confidence 35789999999999999999841100 000000 000 11125555556666678899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-----hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-----QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-----~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+.+..++..++++|+||||.+.-.. +-+.+...-...++|+++.+||-|+.++
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999999973222 2223334444569999999999998764
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-11 Score=116.33 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
.-++++||.+++|||||+++| ++.....+... -+|......-+.+++.+|+++|+||...-
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~seva~y~---------------FTTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSEVADYP---------------FTTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH---hCCCccccccC---------------ceecccccceEeecCceEEEEcCcccccCc
Confidence 468999999999999999999 46655555431 23666777778899999999999997552
Q ss_pred ------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-----CeEEEEecCCccccc----------hhhh
Q 008294 169 ------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV-----PRICFVNKMDRLGAN----------FFRT 227 (571)
Q Consensus 169 ------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-----p~ivviNK~D~~~~~----------~~~~ 227 (571)
..++....|.||++++|+|+...... -..+.+.+...++ |--+.+.|-+.-+-+ -...
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ 203 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDT 203 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHH
Confidence 35678889999999999999875433 3345566665543 333444443332211 1345
Q ss_pred HHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008294 228 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 307 (571)
Q Consensus 228 ~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~ 307 (571)
+..+.+.++++.+.+. |.++-.+..++|.+..+ +.|.+.. +...-
T Consensus 204 ir~iL~Ey~I~nA~V~--Ir~dvTlDd~id~l~~n-rvY~p~l----~v~NK---------------------------- 248 (365)
T COG1163 204 VRAILREYRIHNADVL--IREDVTLDDLIDALEGN-RVYKPAL----YVVNK---------------------------- 248 (365)
T ss_pred HHHHHHHhCcccceEE--EecCCcHHHHHHHHhhc-ceeeeeE----EEEec----------------------------
Confidence 6666677777655433 23334444555554433 2222210 00000
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhC
Q 008294 308 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYL 359 (571)
Q Consensus 308 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~l 359 (571)
...++.+++....+. ...+++||.++.|+++|.+.|.+.+
T Consensus 249 -----iD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 249 -----IDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred -----ccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhh
Confidence 011222222222211 1567779999999999999999876
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=105.47 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=81.7
Q ss_pred EEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHH
Q 008294 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVER 174 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~ 174 (571)
++|.+++|||.|+-++- . |..-.|++.. ..|+......+.+.....++++|||+|+++|.+.+..
T Consensus 2 llgds~~gktcllir~k--d------gafl~~~fis-------tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK--D------GAFLAGNFIS-------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEec--c------CceecCceee-------eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 68999999999986652 2 2222222222 1355555566666667788999999999999999999
Q ss_pred HHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 175 ALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+++.+|..+++.|..+.........| .+..+ ..+.+.++.||+|+..
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 99999999999999877666555555 23333 3567788999999854
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-11 Score=116.00 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=61.5
Q ss_pred EEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcccccchh------------hhhhhceeEeec--------eEEEe
Q 008294 95 IMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMDWME------------QEQERGITITSA--------ATTTY 151 (571)
Q Consensus 95 ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~~~d~~~------------~e~~~g~t~~~~--------~~~~~ 151 (571)
|+|++|+||||++.++.... |........+++.....+.+ ...+.|.--+.+ ...++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999997433 22333444555543322211 111111100000 00011
Q ss_pred e-------cCeEEEEEcCCCCCCcHHHHHH------HHH--hcCeEEEEEeCCCCCchhHH-----HHHHHHHhcCCCeE
Q 008294 152 W-------NKHRINIIDTPGHVDFTLEVER------ALR--VLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRI 211 (571)
Q Consensus 152 ~-------~~~~i~liDTPG~~~f~~~~~~------~l~--~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~i 211 (571)
| ....+.|+|||||.++...... .+. ..=++++++|+..-..+... ..+..+.+.++|++
T Consensus 81 ~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~v 160 (238)
T PF03029_consen 81 WLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHV 160 (238)
T ss_dssp HHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 1237999999999886433222 222 23478899999754333222 22233455799999
Q ss_pred EEEecCCccccc
Q 008294 212 CFVNKMDRLGAN 223 (571)
Q Consensus 212 vviNK~D~~~~~ 223 (571)
.|+||+|+....
T Consensus 161 nvlsK~Dl~~~~ 172 (238)
T PF03029_consen 161 NVLSKIDLLSKY 172 (238)
T ss_dssp EEE--GGGS-HH
T ss_pred EeeeccCcccch
Confidence 999999998754
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=98.47 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+.+-.|||..|+|||.|+..+.........+.. -|+.+....+.+.....++++|||.|+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcpht----------------igvefgtriievsgqkiklqiwdtagq 70 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT----------------IGVEFGTRIIEVSGQKIKLQIWDTAGQ 70 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcc----------------cceecceeEEEecCcEEEEEEeecccH
Confidence 3445778889999999999999999643322221111 234444444455556788999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHhc---CCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKY---GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~---~~p~ivviNK~D~~~ 221 (571)
++|...+..+++.+-++++|.|.+...+......|. .++.. +.-++++.||.|+..
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 999999999999999999999998655444444443 23333 334577889999864
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=108.83 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=53.1
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH-Hh--cCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA-DK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~-~~--~~~p~ivviNK~D~~~ 221 (571)
....+.||||||+..|...+..+++.+|++|+|+|.++.........| ..+ .. .++|+++|+||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 457899999999999998889999999999999999875443333333 222 22 3578899999999853
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=108.60 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||+|+-+++...........+ + +.......+......+.|+||+|+.+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~pti----------e-------d~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTI----------E-------DSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCc----------c-------ccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 4689999999999999999997332211111100 0 1112222333345778899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|+.++|++.++--..+....+ ..+ ....+|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 9999999999999999999875544433322 222 224689999999999865
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-10 Score=107.39 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc--ccchhhhhhhcee---EeeceEEE----------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT--MDWMEQEQERGIT---ITSAATTT---------- 150 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~--~d~~~~e~~~g~t---~~~~~~~~---------- 150 (571)
....+++|+++|+.|+|||||+++++...+...+.+ +..+... .|.... +..|.. +......+
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~-v~~~~~~~~~D~~~~-~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIA-VIEGDVITKFDAERL-RKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEE-EEECCCCCcccHHHH-HHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 445689999999999999999999997654322222 2222221 222221 122221 11111111
Q ss_pred ---eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 151 ---YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 151 ---~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+..+.||+|.|...... ......+..+.|+|+.++...... .....+.|.++++||+|+..
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh----hHhHHhhCCEEEEEHHHccc
Confidence 00246899999999321111 111234666789999866543221 22234578899999999864
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=104.29 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.+.|.++|..|+|||+|+-.|.+... .+. -+++......+..++...+|||.|||.+..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~----~~T-----------------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH----RGT-----------------VTSIEPNEATYRLGSENVTLVDLPGHSRLR 96 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc----cCe-----------------eeeeccceeeEeecCcceEEEeCCCcHHHH
Confidence 36789999999999999999973211 111 135666677777778889999999999988
Q ss_pred HHHHHHHH---hcCeEEEEEeCCCCC---chhHHHHHHHH-----HhcCCCeEEEEecCCccccchhhhHH
Q 008294 170 LEVERALR---VLDGAICLFDSVAGV---EPQSETVWRQA-----DKYGVPRICFVNKMDRLGANFFRTRD 229 (571)
Q Consensus 170 ~~~~~~l~---~~D~~ilVvda~~g~---~~~~~~~~~~~-----~~~~~p~ivviNK~D~~~~~~~~~~~ 229 (571)
......+. .+-++|||||+..-. ....+.+...+ ....+|++++.||.|+..+...+.++
T Consensus 97 ~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 97 RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 88777777 789999999997432 22222222222 24567888999999998877555444
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=101.50 Aligned_cols=113 Identities=23% Similarity=0.192 Sum_probs=80.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+--+|.++|-.|+||||++-++- .|++.. .--|+..+..++.+++..+++||..|+...
T Consensus 17 ~e~rililgldGaGkttIlyrlq--------vgevvt-------------tkPtigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQ--------VGEVVT-------------TKPTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcc--------cCcccc-------------cCCCCCcCccccccccccceeeEccCcccc
Confidence 44578899999999999887773 122110 011444555566678999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCC--chhHHHHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGV--EPQSETVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
..-+..++...|.+|+|||..+-. .....++..++.+ .+...+++.||+|...+
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 999999999999999999998632 2233334334332 35566788999997654
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=101.67 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------cCeEEEEEc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------NKHRINIID 161 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~i~liD 161 (571)
.+...+|.+|+|||+++-+.. .|.... .+.. ..||.+....+.+.. ....++|||
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT--D~~F~~-------qFIs-------TVGIDFreKrvvY~s~gp~g~gr~~rihLQlWD 73 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT--DGKFNT-------QFIS-------TVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWD 73 (219)
T ss_pred HHHHhhccCCCCceEEEEEec--CCcccc-------eeEE-------EeecccccceEEEeccCCCCCCcceEEEEeeec
Confidence 345678999999999987764 111100 0000 012222222222211 125689999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcccc
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|+|+++|.+.+-..++.|-+.++++|.+..........| .+++. .+--++++.||+|+.+.
T Consensus 74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 999999999999999999999999999876555555544 33332 24446778999998754
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=96.63 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchh--hhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME--QEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~--~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.++.+||.+-+|||+|+..+. .|...... +.+--.|+.. .|-++|. ..+++||||+|+++|
T Consensus 9 frlivigdstvgkssll~~ft--~gkfaels---dptvgvdffarlie~~pg~------------riklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFT--EGKFAELS---DPTVGVDFFARLIELRPGY------------RIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHh--cCcccccC---CCccchHHHHHHHhcCCCc------------EEEEEEeeccchHHH
Confidence 567899999999999999986 33322221 1121122221 2222332 357899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--C---CC-eEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--G---VP-RICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~---~p-~ivviNK~D~~~~ 222 (571)
...+..+++.+-++++|+|.++.-.....+.|..-.++ + .+ +.+|..|+|+...
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 99999999999999999999876555555555332222 2 22 3568899998643
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.11 E-value=7e-10 Score=107.60 Aligned_cols=126 Identities=27% Similarity=0.270 Sum_probs=70.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeec------Ccccccch---hhhhhhceeEeeceEE-------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE------GTATMDWM---EQEQERGITITSAATT------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~------g~~~~d~~---~~e~~~g~t~~~~~~~------- 149 (571)
+-..|+|.|.+|+|||||+++|... .|.....-.+++ |...-|.. ......|+-+.+....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4679999999999999999999733 232222212221 22222221 1223445555443322
Q ss_pred ---------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhcCCCeEEEEecCC
Q 008294 150 ---------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 150 ---------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~~~p~ivviNK~D 218 (571)
++.-++.+.||.|-|...- + ..-...+|.+++|+-+..|..-|.. -+++. .-++|+||+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs--E-~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS--E-VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH--H-HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc--H-HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 1114789999999997652 2 2235678999999988766555442 33333 4599999999
Q ss_pred ccccc
Q 008294 219 RLGAN 223 (571)
Q Consensus 219 ~~~~~ 223 (571)
+..++
T Consensus 179 ~~gA~ 183 (266)
T PF03308_consen 179 RPGAD 183 (266)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76653
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-10 Score=96.70 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC----C
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----V 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~----~ 166 (571)
++|++||.+|+|||||+++|. |.... -.....+ +|+ .=-.|||||- .
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~---G~~~l----------------------ykKTQAv--e~~--d~~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY---GNDTL----------------------YKKTQAV--EFN--DKGDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhh---cchhh----------------------hccccee--ecc--CccccCCchhhhhhh
Confidence 479999999999999999995 21000 0011111 121 1237899993 3
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+-.........+|.+++|-.++++.+.-. -..+.-...|+|-|++|+|++.
T Consensus 53 ~~Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 53 RWYHALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred HHHHHHHHHhhccceeeeeecccCccccCC---cccccccccceEEEEecccccc
Confidence 334445566678899999998887643211 1223345678899999999973
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-10 Score=97.00 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=81.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~ 165 (571)
..+-.+|.++|-.++||||++..|- +. |....-...|. +...+.+. .+++++||..|+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~---sE--------------D~~hltpT~GF----n~k~v~~~g~f~LnvwDiGGq 72 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLK---SE--------------DPRHLTPTNGF----NTKKVEYDGTFHLNVWDIGGQ 72 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHc---cC--------------ChhhccccCCc----ceEEEeecCcEEEEEEecCCc
Confidence 3556789999999999999999994 11 11111111232 22334444 489999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCc--hhHH---HHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVE--PQSE---TVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~--~~~~---~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
......+..++...|++|+|||+++.-. ...+ ++++..+...+|+.++.||-|+..+
T Consensus 73 r~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 73 RGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred cccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 9999999999999999999999876321 2222 2333344567899999999998754
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=112.91 Aligned_cols=82 Identities=23% Similarity=0.260 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-------------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~------------------- 151 (571)
.+|++||.+|+|||||+|+|. +.....+. .+++ |+........
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt---~~~~~~~~-y~f~--------------t~~p~~g~~~v~~~~~~~r~~~~~~~~~~ 63 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT---LADVEIAN-YPFT--------------TIDPNVGVAYVRVECPCKELGVKCNPRNG 63 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCcccccC-CCCc--------------ceeeeeeeeeeccCCchhhhhhhhccccc
Confidence 379999999999999999996 32222111 1111 2111111100
Q ss_pred -----ecCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 152 -----WNKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 152 -----~~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
+....++++||||..+ ........++.+|++++|||+..
T Consensus 64 ~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 64 KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 1235689999999743 23356677999999999999973
|
|
| >PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-11 Score=93.90 Aligned_cols=68 Identities=40% Similarity=0.581 Sum_probs=62.6
Q ss_pred ceEEEEEEecceeCCCCEEEe--CCCCce---eecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccceec
Q 008294 404 GSLTFVRVYAGTLSAGSYVLN--ANKGKK---ERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGETLC 471 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~--~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~ 471 (571)
|+++++||++|+|++||.|++ ..+++. .+|++|+.+++...++++.+.||+++.+.++++ +..|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 445455 899999999999999999999999999999999 79999996
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=106.23 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
......+|+++|.+|+|||||+|+|+..... ..+. -.+.|.........+++..+++|||||.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~--~v~~---------------~~~~T~~~~~~~~~~~g~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKA--ATSA---------------FQSETLRVREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCc--ccCC---------------CCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 3445689999999999999999999722110 0010 0123445555566678899999999999
Q ss_pred CCcHH------H----HHHHHH--hcCeEEEEEeCCC-CCchhHHHHHHHHHh-cC----CCeEEEEecCCccc
Q 008294 166 VDFTL------E----VERALR--VLDGAICLFDSVA-GVEPQSETVWRQADK-YG----VPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~------~----~~~~l~--~~D~~ilVvda~~-g~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~ 221 (571)
.+... . +..++. ..|.+++|..... .....+...++.+.. ++ .++++|+||+|...
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 87621 1 111222 3466666654432 233444444444433 22 35677888888643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=106.74 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCCCc-------------HHHHHHHHH-hcCeEEEEEeCCCCCchhH-HHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF-------------TLEVERALR-VLDGAICLFDSVAGVEPQS-ETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-------------~~~~~~~l~-~~D~~ilVvda~~g~~~~~-~~~~~~~~~~~~p~ivviNK~D 218 (571)
-..++||||||+... ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.|.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 367999999998632 123555667 4469999999999888877 5788888889999999999999
Q ss_pred ccccc
Q 008294 219 RLGAN 223 (571)
Q Consensus 219 ~~~~~ 223 (571)
.....
T Consensus 204 ~~~~~ 208 (240)
T smart00053 204 LMDEG 208 (240)
T ss_pred CCCcc
Confidence 87543
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=108.49 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=93.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhc---eeEeece-----EEEee---cCeEEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERG---ITITSAA-----TTTYW---NKHRIN 158 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g---~t~~~~~-----~~~~~---~~~~i~ 158 (571)
-..|+++|+.++|||||+|+|....- ...+.......+..|-.+. ...| +|..... +.+.. -...+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~~~~k~Ra~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLV-LPNISNEYDKERAQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhc-cccccchhHHhHHHhccCc-CCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 46799999999999999999974311 0000000000000000000 1123 2322222 11111 236799
Q ss_pred EEcCCCCCC-------------------------cHHH----HHHHHH-hcCeEEEEE-eCC------CCCchhHHHHHH
Q 008294 159 IIDTPGHVD-------------------------FTLE----VERALR-VLDGAICLF-DSV------AGVEPQSETVWR 201 (571)
Q Consensus 159 liDTPG~~~-------------------------f~~~----~~~~l~-~~D~~ilVv-da~------~g~~~~~~~~~~ 201 (571)
||||+|+.+ |... +...+. .+|.+|+|. |++ ++.....++...
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999865 1111 455667 789999999 886 556677888899
Q ss_pred HHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 202 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 202 ~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
.+++.++|+++++||.|-...+..+..+++.++++...+++
T Consensus 175 eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEE
Confidence 99999999999999999544445556677778777544443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=88.17 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~-- 462 (571)
+.||++.|.++|..++.|++..|||.+|+++.||.|++.+.+...+|++|.... .++++|.|||.++| .+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~----~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHH----EPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECC----cCcCEECCCCEEEEEECCCCHH
Confidence 469999999999988999999999999999999999999988888899987543 77999999999998 4543
Q ss_pred CccccceecCCCC
Q 008294 463 DTITGETLCDADH 475 (571)
Q Consensus 463 ~~~~Gdtl~~~~~ 475 (571)
++.+|++||+++.
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 3789999998653
|
EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=103.32 Aligned_cols=128 Identities=21% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-----cc-cch---hhhhhhceeEeeceEE------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-----TM-DWM---EQEQERGITITSAATT------ 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-----~~-d~~---~~e~~~g~t~~~~~~~------ 149 (571)
.+...|+|+|.+|+|||||++.|.... |.....-..++... .. +.. ......+..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 456889999999999999999987432 22111111121111 11 100 0000112111111110
Q ss_pred ----------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 150 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 150 ----------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+...++.+.||||||...-. ...+..+|.++++.+...+..-+. .... ..++|.++|+||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~--~~~~--l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG--IKAG--LMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH--HHHH--HhhhccEEEEEcccc
Confidence 11247899999999976422 335677899888865543321111 1111 246889999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 754
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-09 Score=85.17 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=69.1
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cc
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~ 464 (571)
||.+.|...+..+ .|++..|||.+|++++||.|+..+.+...+|++|...+ .++++|.|||.+++ .+++ ++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~----~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDD----EEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECC----eECCEECCCCEEEEEECCCCHHHC
Confidence 6889999999888 89999999999999999999999988888899887553 88999999999996 5655 48
Q ss_pred cccceecC
Q 008294 465 ITGETLCD 472 (571)
Q Consensus 465 ~~Gdtl~~ 472 (571)
..|++||+
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 89999874
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=98.65 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=73.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeec-----Ccccc-cchh---hhhhhceeEeeceEE-------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHE-----GTATM-DWME---QEQERGITITSAATT------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~-----g~~~~-d~~~---~e~~~g~t~~~~~~~------- 149 (571)
+-..|+|.|.+|+|||||+++|... .|.....-.+++ |.+.+ |... .....|+-+.+....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 4458999999999999999999632 233222222222 22221 1111 111223332222111
Q ss_pred ---------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 150 ---------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 150 ---------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
|+--++.+.||.|-|...-.. .-...+|.+++|.=+.-|...|.... --+.+--++||||+|+.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~ 202 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRK 202 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChh
Confidence 111478999999999765222 22356799998887777766665432 11123449999999976
Q ss_pred ccc
Q 008294 221 GAN 223 (571)
Q Consensus 221 ~~~ 223 (571)
+++
T Consensus 203 ~A~ 205 (323)
T COG1703 203 GAE 205 (323)
T ss_pred hHH
Confidence 653
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-10 Score=99.99 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=82.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++...++|+|..++||||++.+++ .|...+- +..+...|+.+ ....+.....++.+|||.|+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryC--kgifTkd---ykktIgvdfle-----------rqi~v~~Edvr~mlWdtagq 79 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKD---YKKTIGVDFLE-----------RQIKVLIEDVRSMLWDTAGQ 79 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHh--ccccccc---cccccchhhhh-----------HHHHhhHHHHHHHHHHhccc
Confidence 34567889999999999999999997 2211110 00011112211 11112234567889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH--HhcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA--DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~--~~~~~p~ivviNK~D~~~~ 222 (571)
.+|-..+..+++.|.+.++|++.++........-| +.. .-..+|.++|-||||+...
T Consensus 80 eEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 80 EEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred hhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 99999999999999999999998875544333333 222 2247999999999998754
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=95.97 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+....+|+|.|..- ..... -..+|.+|+|+|+.++...+.. . .......-++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhccEEEEEhhhccc
Confidence 46788999999321 11111 1236899999999876553221 0 1112223389999999874
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=97.21 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=77.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCcHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f~~ 170 (571)
+|.++|..++||||+.+.+..+... . +-..-|.|.......+.. +...+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p--~---------------dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP--R---------------DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G--G---------------GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc--h---------------hccccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 5889999999999999998722110 0 011224466555555543 556999999999998765
Q ss_pred H-----HHHHHHhcCeEEEEEeCC-CCCchhH---HHHHHHHHhc--CCCeEEEEecCCccccc-hhhhHHHHHHHh
Q 008294 171 E-----VERALRVLDGAICLFDSV-AGVEPQS---ETVWRQADKY--GVPRICFVNKMDRLGAN-FFRTRDMIVTNL 235 (571)
Q Consensus 171 ~-----~~~~l~~~D~~ilVvda~-~g~~~~~---~~~~~~~~~~--~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 235 (571)
. ...-++.++++|+|+|+. +...... ...+..+.+. ++.+.|++.|+|+...+ ..++.+.+++.+
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 4 466789999999999998 3332222 2333444443 67788999999997654 233444444433
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-09 Score=97.12 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=48.0
Q ss_pred cCeEEEEEcCCCCCCc----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEEecC
Q 008294 153 NKHRINIIDTPGHVDF----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVNKM 217 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivviNK~ 217 (571)
....+.|+||||..+. ...+..++..+|++|+|+++.........+.+.... ...-..++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3456999999998542 355778889999999999999877766666555444 4455677888985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-08 Score=98.52 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+||||++|+|+ |......+ .+ .+.+.........+++..+++|||||..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIl---G~~v~~vs--------~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSII---GERIATVS--------AF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHh---CCCccccc--------CC------CCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 356789999999999999999997 22111000 00 01122222334456889999999999987
Q ss_pred cHH---HHHHHHH------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-----CCCeEEEEecCCcc
Q 008294 168 FTL---EVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~---~~~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~ 220 (571)
... +....++ ..|++++|..... .....+..+++.+... -.+.++++|+.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 521 2222233 4789999954332 3444445555544432 25689999999975
|
|
| >cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=81.28 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=67.7
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCC--CCceeecceEEEeccCceeecCeecCCCEEEEeCCCC--cc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNAN--KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD--TI 465 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~ 465 (571)
+.++|++++.+++.|+++++||++|+|++||.++..+ .....+|.+|+... .+++++.|||++++.+.+. +.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccC
Confidence 3678999999999999999999999999999999887 66677888887665 6789999999999977654 88
Q ss_pred ccceec
Q 008294 466 TGETLC 471 (571)
Q Consensus 466 ~Gdtl~ 471 (571)
+||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 899875
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.8e-08 Score=98.11 Aligned_cols=151 Identities=20% Similarity=0.223 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|.++|..|.||||++|.|+...- .+.....+....-..+++.+......+.-++ ..+++|||||+.|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l--------~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSL--------VDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhc--------cCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 57999999999999999999984411 1111111111111344555666555555554 4688999999988
Q ss_pred cHHH--------------HHHHH-------H-------hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 168 FTLE--------------VERAL-------R-------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 168 f~~~--------------~~~~l-------~-------~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
+... ...++ | ..+++++.+-.+ +|+.+.+.+.++.+.+. +.+|-||-|+|
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNlIPVI~KaD 173 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNLIPVIAKAD 173 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCeeeeeeccc
Confidence 5222 11111 1 147788888765 89999999888777654 78899999999
Q ss_pred ccccc-hhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 219 RLGAN-FFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
....+ .....+.|++.+....++++-|...+
T Consensus 174 ~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e 205 (373)
T COG5019 174 TLTDDELAEFKERIREDLEQYNIPVFDPYDPE 205 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCceeCCCCcc
Confidence 87644 66677778887877777777775443
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=96.13 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---------------- 154 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---------------- 154 (571)
.+|++||.+|+|||||+|+|. +.....+. . .++|+......+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt---~~~~~v~n-y--------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT---KAGAEAAN-Y--------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh---CCCCeecc-c--------------ccccccceEEEEEeccccchhhHHhcCCcccc
Confidence 479999999999999999995 33322222 1 2334444333333222
Q ss_pred -eEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 008294 155 -HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 155 -~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~ 189 (571)
..+.++||||..+ ........++.+|++++|||+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3699999999764 2335667789999999999995
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=102.33 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhce---eEeeceEEEee-cCeEEEEEcCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGI---TITSAATTTYW-NKHRINIIDTPGH 165 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~---t~~~~~~~~~~-~~~~i~liDTPG~ 165 (571)
..+|||+|.+|+|||||+|+|. |. |.-++|.. ..|+ |... ..+.. +...+++||.||.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr---Gl----~~~d~~aA---------~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR---GL----GHEDEGAA---------PTGVVETTMEP--TPYPHPKFPNVTLWDLPGI 96 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT---T------TTSTTS-----------SSSHSCCTS---EEEE-SS-TTEEEEEE--G
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CC----CCCCcCcC---------CCCCCcCCCCC--eeCCCCCCCCCeEEeCCCC
Confidence 4699999999999999999995 21 11111110 1121 2221 12222 2236999999997
Q ss_pred CCcHHHHHHH-----HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 166 VDFTLEVERA-----LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 166 ~~f~~~~~~~-----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
..-.-....+ +..-|.+|++.+. .+...+..+++.+.++++|+.+|-+|+|.
T Consensus 97 gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 97 GTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 5432233333 4455887776653 56777888889999999999999999995
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.6e-08 Score=92.98 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
.+|+++|..|+||||++|.|+....... ......+|.........+.+..+++|||||..|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~----------------~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS----------------GSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS------------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee----------------ccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 4799999999999999999972111000 0011233444445555778999999999997652
Q ss_pred -----HHHHHHHHH----hcCeEEEEEeCCCCCchhHHHHHHHHHh-cC----CCeEEEEecCCcccc
Q 008294 169 -----TLEVERALR----VLDGAICLFDSVAGVEPQSETVWRQADK-YG----VPRICFVNKMDRLGA 222 (571)
Q Consensus 169 -----~~~~~~~l~----~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~~ 222 (571)
..++..++. ..+++++|+... .++......++.+.. ++ .-.+||++..|....
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 223333332 358999999987 677777777766654 23 246788898887654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=90.26 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=81.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++.-++.++|--|||||||++.|- ..+.+. .--|.......+...+.+++-+|..||..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK-----dDrl~q----------------hvPTlHPTSE~l~Ig~m~ftt~DLGGH~q 76 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK-----DDRLGQ----------------HVPTLHPTSEELSIGGMTFTTFDLGGHLQ 76 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc-----cccccc----------------cCCCcCCChHHheecCceEEEEccccHHH
Confidence 334579999999999999999883 111110 01134444444556888999999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCCeEEEEecCCccccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQA----DKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~----~~~~~p~ivviNK~D~~~~~ 223 (571)
-...+..++..+|+++++||+.+.-..+ .+..+..+ .-.++|+++..||+|++.+-
T Consensus 77 Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 77 ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 8888888999999999999998643222 12222222 23589999999999998764
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-08 Score=96.86 Aligned_cols=140 Identities=20% Similarity=0.204 Sum_probs=81.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~~ 167 (571)
..||.++|..|.|||||+|.|+........ ...+.......+..++......+..+ ...+++|||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISED--------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-----------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccc--------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 368999999999999999999732111110 00000011122333444444444433 35689999999886
Q ss_pred cHHH--------------HHHHH-------------HhcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 FTLE--------------VERAL-------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f~~~--------------~~~~l-------------~~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
.... ...++ ...|++++.++++ +|+.+.+.+.++.+... +++|-|+.|+|.
T Consensus 76 ~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaKaD~ 154 (281)
T PF00735_consen 76 NIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAKADT 154 (281)
T ss_dssp SSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEESTGGG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEecccc
Confidence 3111 11111 1248899999986 78888888888777655 889999999998
Q ss_pred cccc-hhhhHHHHHHHhCCc
Q 008294 220 LGAN-FFRTRDMIVTNLGAK 238 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~~ 238 (571)
...+ .....+.|++.+..+
T Consensus 155 lt~~el~~~k~~i~~~l~~~ 174 (281)
T PF00735_consen 155 LTPEELQAFKQRIREDLEEN 174 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHc
Confidence 7643 445555666655433
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.6e-08 Score=101.59 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
...+|++|++|+|||||+..|+... ..+.-.+....+|+..+ +..+|+|+.|| .| .
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~---------------tk~ti~~i~GPiTvvsg------K~RRiTflEcp--~D-l 124 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRF---------------TKQTIDEIRGPITVVSG------KTRRITFLECP--SD-L 124 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHH---------------HHhhhhccCCceEEeec------ceeEEEEEeCh--HH-H
Confidence 4567899999999999999997321 11111222233454443 56899999999 33 5
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEE-EEecCCccccchhhhHHHHHHHhCCcce-------e
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPL-------V 241 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l~~~~~-------~ 241 (571)
..++.....||+++++||++.|+.-.|.+.+..+...+.|.++ |++..|+... ..++.++++.|..... .
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaK 202 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAK 202 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCce
Confidence 5778888999999999999999999999999999999999875 7899998653 2345555554432111 1
Q ss_pred ee---------ccCCCCCCcceeeecccceeEEecC
Q 008294 242 VQ---------LPVGAEDNFKGVVDLVKMKAIIWSG 268 (571)
Q Consensus 242 ~~---------~pi~~~~~~~~~id~~~~~~~~~~~ 268 (571)
++ +|-.+-.++...|.+++.+.+.|..
T Consensus 203 lFylsgV~nGRYpDreilnLsRfisVMKfRPl~Wrn 238 (1077)
T COG5192 203 LFYLSGVENGRYPDREILNLSRFISVMKFRPLEWRN 238 (1077)
T ss_pred EEEecccccCCCCCHHHHHHHHHHhhhccccccccc
Confidence 11 1222223455556666777777764
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.8e-08 Score=95.79 Aligned_cols=128 Identities=13% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC-cccccchhhhhhhc---eeEeeceEEEe----------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG-TATMDWMEQEQERG---ITITSAATTTY---------- 151 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g-~~~~d~~~~e~~~g---~t~~~~~~~~~---------- 151 (571)
.......|.|+|.+|+|||||+++++.........+.+... .+..|... -+..| +.+........
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r-I~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR-IRATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH-HHhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 44568899999999999999999998653222222222111 11112211 12222 22222211111
Q ss_pred ---ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 152 ---WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 152 ---~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..+..+.||++-|.--.-.. ..+. .+.-+.|++..+|..... +.-..+..+-++|+||+|+..
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~--fdlg-e~~~v~vlsV~eg~dkpl----Kyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPAS--FDLG-EKHKVAVLSVTEGEDKPL----KYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCc--cchh-hceeEEEEECccccccch----hccchhhcCcEEEEEhHHcCc
Confidence 13457889999985211000 0111 133457788877643111 111223567799999999864
|
|
| >cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=77.41 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=64.9
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Cc
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DT 464 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~ 464 (571)
||.+.|.+.+... |++..|||.+|++++||.|+..+.+...+|++|.... .++++|.|||.+++ .+++ ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNED----VEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECC----EECCEECCCCEEEEEecCCCHHHC
Confidence 6788888888653 8999999999999999999999988888899886442 78999999999998 3443 37
Q ss_pred cccceecC
Q 008294 465 ITGETLCD 472 (571)
Q Consensus 465 ~~Gdtl~~ 472 (571)
..|+.||+
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 78998874
|
In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-08 Score=93.41 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=84.3
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
+|..+.+.+++.|.+|+|||+|+|.++.... +...++. ..|-|.... +..-+..+.++|.||
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~--------------K~g~Tq~in---~f~v~~~~~~vDlPG 192 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKS--------------KNGKTQAIN---HFHVGKSWYEVDLPG 192 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCC--------------CCccceeee---eeeccceEEEEecCC
Confidence 4556678999999999999999999973211 1111110 234444333 333467899999999
Q ss_pred CC----------CcHHHHHHHH---HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 165 HV----------DFTLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~----------~f~~~~~~~l---~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+. |+...+..++ +..=.+++++|+.-+++..+...+.++.+.++|+.+|+||||+..
T Consensus 193 ~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 193 YGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred cccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 42 2333333333 233457889999999999999999999999999999999999753
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-08 Score=90.79 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe---ecCeEEEEEcCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINIIDTPGHV 166 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~i~liDTPG~~ 166 (571)
...+++||..++|||.|+-.+............+. +.....+. .....+.||||.|++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-------------------dnys~~v~V~dg~~v~L~LwDTAGqe 64 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-------------------DNYSANVTVDDGKPVELGLWDTAGQE 64 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-------------------ccceEEEEecCCCEEEEeeeecCCCc
Confidence 46889999999999999987752111111111111 11111122 234568999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhH-HHHH-HHHHhc--CCCeEEEEecCCcc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADKY--GVPRICFVNKMDRL 220 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~-~~~~~~--~~p~ivviNK~D~~ 220 (571)
+|-.-...++..+|.++++++......... ...| -.++.+ ++|+|+|.+|.|+.
T Consensus 65 dYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 65 DYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred ccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 997755568889999999898765443322 1122 233333 79999999999986
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=99.07 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------------- 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-------------- 153 (571)
.+...|+|||.+|+|||||+|+|. +.....+.. .++|+......+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt---~~~~~v~n~---------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC---KQQVPAENF---------------PFCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh---cCcccccCC---------------CCCcccceEEEEecccchhhHHHHHcCCc
Confidence 445689999999999999999994 332222221 234555554444443
Q ss_pred ---CeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 008294 154 ---KHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 154 ---~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~ 189 (571)
..++.++||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 34599999999754 3345677889999999999985
|
|
| >KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.9e-09 Score=104.70 Aligned_cols=130 Identities=34% Similarity=0.362 Sum_probs=103.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee--------------eeeecCcccccchhhhhhhceeEeeceEEEeec
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--------------GEVHEGTATMDWMEQEQERGITITSAATTTYWN 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~--------------g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~ 153 (571)
+..+||+++||.++||||+.. +..|.+..+ |+. .....+|...-|+++|+++......+...
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf-~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSF-KYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhcccee-eeeeeechhhhccccceEEEEEeecccce
Confidence 346899999999999999887 333433321 221 12366788889999999988888888778
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCe-EEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~ 221 (571)
.+.+++||.|||.+|...+.....++|.+++.|.+..| ...|++++...+..+++.. ++.+||+|-..
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 89999999999999999999999999999999988432 3579999999999887654 56699999754
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.1e-08 Score=95.71 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=53.9
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-----------------e
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-----------------H 155 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~ 155 (571)
|+|||.+|+|||||+|+|. +.....+. . .++|+......+.+.+ .
T Consensus 1 igivG~PN~GKSTLfn~Lt---~~~~~~~n-~--------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT---KAGAEAAN-Y--------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh---CCCCcccc-c--------------cccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 5899999999999999995 33222221 1 2334444443333322 3
Q ss_pred EEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCC
Q 008294 156 RINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 156 ~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~ 189 (571)
.+.++||||..+ ........++.+|++++|||+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 599999999764 2335666789999999999985
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=74.79 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=63.8
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCcccc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 467 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~G 467 (571)
|++.|...+.....|+...|||.+|++++||+|+..+.+...+|+.|...+ .++++|.|||.++| .+-+++.+|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFD----GELDEAGAGESVTLTLEDEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECC----cEeCEEcCCCEEEEEECCccccCCC
Confidence 356677777666667789999999999999999999988888899986443 77999999999988 333457889
Q ss_pred ceec
Q 008294 468 ETLC 471 (571)
Q Consensus 468 dtl~ 471 (571)
++||
T Consensus 77 ~vl~ 80 (81)
T cd03695 77 DVIV 80 (81)
T ss_pred CEEe
Confidence 9887
|
Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=92.24 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=95.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
-.++.++|..|.|||||+|.|+...-. +....+..+......+.+......++-++ .+++++||||..|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~---------~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLS---------GNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhcc---------CCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 479999999999999999999743110 00001111122222344444444444444 4678999999988
Q ss_pred cHHH--------------HHHHH-----------H--hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 FTLE--------------VERAL-----------R--VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f~~~--------------~~~~l-----------~--~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+... ...++ . ..+++++.+... +|+.+.+.+.++.+.. .+.+|-||-|.|.
T Consensus 92 ~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 92 AVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADT 170 (366)
T ss_pred cccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeecccc
Confidence 4211 12222 1 357888888775 7899999888777654 4788999999998
Q ss_pred cccc-hhhhHHHHHHHhCCcceeeecc
Q 008294 220 LGAN-FFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 220 ~~~~-~~~~~~~i~~~l~~~~~~~~~p 245 (571)
...+ .....+.|.+.+....++++.|
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~vf~f 197 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIKVFDF 197 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcceecC
Confidence 7654 5666777777777766666543
|
|
| >cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=75.56 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=64.8
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccc
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTI 465 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~ 465 (571)
|.+.|.++|..++.|.+..|||.+|++++||.+...+.+...+|++|... .+++++|.|||.+++ .+++ ++.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH----GKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC----CcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 45778888888889999999999999999999999888877788888644 378999999999998 3442 467
Q ss_pred ccceec
Q 008294 466 TGETLC 471 (571)
Q Consensus 466 ~Gdtl~ 471 (571)
.|++||
T Consensus 77 ~G~vl~ 82 (83)
T cd03696 77 RGDVLS 82 (83)
T ss_pred CccEEc
Confidence 888886
|
SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=81.55 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=82.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
-.||.+||.+|.|||||+|.|... +.....+. +...+-....+.+......++.++ .++++|||||+.|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s-~v~~~s~~--------~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKS-HVSDSSSS--------DNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHH-HHhhccCC--------CcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 579999999999999999999622 11111111 111111111223333333344444 4689999999988
Q ss_pred cHH--------------HHHHHHH--------------hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 168 FTL--------------EVERALR--------------VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 168 f~~--------------~~~~~l~--------------~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
+.. +...+++ ..+++++.+.++ +.+.+.+.+.+..+.+. +.++-||-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEeecc
Confidence 411 1122221 136777778775 66778888877666543 56778899999
Q ss_pred ccccc-hhhhHHHHHHHhCCcc
Q 008294 219 RLGAN-FFRTRDMIVTNLGAKP 239 (571)
Q Consensus 219 ~~~~~-~~~~~~~i~~~l~~~~ 239 (571)
-..-+ .....++|++.|-.+.
T Consensus 196 tlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcC
Confidence 76533 3344556666664433
|
|
| >cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-07 Score=76.07 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=64.1
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCC--CceeecceEEEeccCceeecCeecCCCEEEE--eCCC--C
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANK--GKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--D 463 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~ 463 (571)
|++.|...+..+++|.+..|||.+|++++||.|+..+. +...+|++|... ..++++|.|||.+++ .+++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF----RKTLDEAEAGDNVGVLLRGVKRED 76 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC----CcCCCEECCCCEEEEEECCCCHHH
Confidence 35677777777888999999999999999999987653 456678887644 378999999999998 4443 3
Q ss_pred ccccceecCC
Q 008294 464 TITGETLCDA 473 (571)
Q Consensus 464 ~~~Gdtl~~~ 473 (571)
+.+|++||++
T Consensus 77 v~rG~vl~~~ 86 (87)
T cd03697 77 VERGMVLAKP 86 (87)
T ss_pred cCCccEEecC
Confidence 7889999875
|
Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=98.01 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
....+++.++|.+|+|||+++|.+. .. ...+.+.. -+|-..-..++.++-.++++|||||.-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vt---ra---dvevqpYa------------FTTksL~vGH~dykYlrwQViDTPGIL 226 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVT---RA---DDEVQPYA------------FTTKLLLVGHLDYKYLRWQVIDTPGIL 226 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccc---cc---ccccCCcc------------cccchhhhhhhhhheeeeeecCCcccc
Confidence 4467899999999999999998874 11 11111111 123334444556666789999999976
Q ss_pred Cc------HHH--HHHHHHhc-CeEEEEEeCCC--CCchhHH-HHHHHHH--hcCCCeEEEEecCCccc
Q 008294 167 DF------TLE--VERALRVL-DGAICLFDSVA--GVEPQSE-TVWRQAD--KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f------~~~--~~~~l~~~-D~~ilVvda~~--g~~~~~~-~~~~~~~--~~~~p~ivviNK~D~~~ 221 (571)
|- .-+ .+.++.-. -+++++.|.++ |...... .++...+ -.+.|.|+|+||+|...
T Consensus 227 D~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 227 DRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred CcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC
Confidence 62 111 22233222 35778888874 4332222 2223332 24899999999999765
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=77.55 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=76.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEe-eceEEEee---cCeEEEEEcCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITIT-SAATTTYW---NKHRINIIDTPG 164 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~-~~~~~~~~---~~~~i~liDTPG 164 (571)
+.-+++++|.-++|||++++.|++-..... +.... |+. ....+++. -...+.|.||.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~--------~e~~p----------TiEDiY~~svet~rgarE~l~lyDTaG 69 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPG--------TELHP----------TIEDIYVASVETDRGAREQLRLYDTAG 69 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCC--------Ccccc----------chhhheeEeeecCCChhheEEEeeccc
Confidence 355789999999999999999996443221 11111 111 11112221 135688999999
Q ss_pred CCCcHHHHH-HHHHhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVE-RALRVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~-~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~ivviNK~D~~~ 221 (571)
..+...+.- .++..+|+.++|.|..+.-..+-.+.+..-. +..+|+++..||+|+..
T Consensus 70 lq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 70 LQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred ccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 999855544 4667789999999998766666655554322 24689999999999853
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=85.11 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
......++.+|++++|+|+.++...+...+...+...++|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 344556677999999999988776666666666666789999999999975
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd03694 GTPBP_II Domain II of the GP-1 family of GTPase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-07 Score=74.54 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=63.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC----ceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 390 FAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG----KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 390 ~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
|.+.|.+.|..++.|.+..|||.+|++++||.++..+.+ ...+|++|... ..++++|.|||.+++ .+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN----RSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC----CeECCEECCCCEEEEEEcCCCH
Confidence 356777788778899999999999999999999998863 46677777543 488999999999998 4443
Q ss_pred -CccccceecC
Q 008294 463 -DTITGETLCD 472 (571)
Q Consensus 463 -~~~~Gdtl~~ 472 (571)
++.+|++||.
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 3778988873
|
This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=90.61 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=72.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~ 166 (571)
...+.|++||.+|+|||||+++|. ++.. .+..... -|.+....... -.+..+.+.||-|+.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT---~Aal-----~p~drLF----------ATLDpT~h~a~Lpsg~~vlltDTvGFi 237 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALT---KAAL-----YPNDRLF----------ATLDPTLHSAHLPSGNFVLLTDTVGFI 237 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHH---hhhc-----Cccchhh----------eeccchhhhccCCCCcEEEEeechhhh
Confidence 446899999999999999999996 2110 1100000 01111111111 145678899999975
Q ss_pred Cc--------HHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCCe-------EEEEecCCcc
Q 008294 167 DF--------TLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVPR-------ICFVNKMDRL 220 (571)
Q Consensus 167 ~f--------~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p~-------ivviNK~D~~ 220 (571)
.- ...+..-...+|+++.|+|.++.. ..|...++..+...++|- +=|=||+|..
T Consensus 238 sdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 238 SDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 42 223444566789999999999864 456667788888888862 3345677753
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.9e-07 Score=82.24 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=64.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc-ccccchhhhhhhcee---EeeceEE-Ee-------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT-ATMDWMEQEQERGIT---ITSAATT-TY------------- 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~-~~~d~~~~e~~~g~t---~~~~~~~-~~------------- 151 (571)
.+.|.+.|++|+|||||+.+++.......+.+-+...- +..|.....+..|.- +.+...+ ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 58999999999999999999986554333333222111 111221111112221 1111111 00
Q ss_pred -ecCeEEEEEcCCCCCCcHHHHHHHHHhcC-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 152 -WNKHRINIIDTPGHVDFTLEVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 152 -~~~~~i~liDTPG~~~f~~~~~~~l~~~D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....+.||.+.| +...- .+....| .-|+|+|..+|...--.-.-. .-.--++||||.|+..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~ 156 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAP 156 (202)
T ss_pred cCCcCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHH
Confidence 0225788999988 21111 1112334 789999999875421110000 0012379999999864
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.5e-06 Score=90.26 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.....+|+++|.+|+||||++|+|+..... ..... ..++|. .......+.+..+++|||||.
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf--~vss~--------------~~~TTr-~~ei~~~idG~~L~VIDTPGL 176 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKF--STDAF--------------GMGTTS-VQEIEGLVQGVKIRVIDTPGL 176 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccc--cccCC--------------CCCceE-EEEEEEEECCceEEEEECCCC
Confidence 3445578999999999999999999722110 11100 112222 223334557889999999998
Q ss_pred CCcH------HHH----HHHHH--hcCeEEEEEeCCCC-CchhHHHHHHHHHh-cC----CCeEEEEecCCccc
Q 008294 166 VDFT------LEV----ERALR--VLDGAICLFDSVAG-VEPQSETVWRQADK-YG----VPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~------~~~----~~~l~--~~D~~ilVvda~~g-~~~~~~~~~~~~~~-~~----~p~ivviNK~D~~~ 221 (571)
.+.. .++ ...+. ..|++|+|+..... ........++.+.. ++ .-.|||++..|...
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 8641 122 22333 36888888765422 11233334444432 22 35688999999864
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-07 Score=80.80 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..+.++++|..|.||||++++.+ +|...+.... .-|+........-..+..+++.|||.|++.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~a--------------t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYPA--------------TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceecccC--------------cceeEEeeeeeecccCcEEEEeeecccceee
Confidence 47899999999999999999998 4433332211 1133332222222224489999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH--HHHH-hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW--RQAD-KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~--~~~~-~~~~p~ivviNK~D~~~ 221 (571)
......++-.+.++|+++|....++-+....| ..++ ..++|++++.||.|-..
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 88877788888999999999876665554443 2232 24689999999999644
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.8e-06 Score=78.22 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh--cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~ 221 (571)
+..++..+|.+++|+|+.+........+.+.+.. .++|+++|+||+|+..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 4678899999999999998766666666666654 3489999999999853
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.3e-06 Score=76.53 Aligned_cols=125 Identities=22% Similarity=0.154 Sum_probs=66.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhh--hhceeEeeceEEEee----------------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQ--ERGITITSAATTTYW---------------- 152 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~--~~g~t~~~~~~~~~~---------------- 152 (571)
.++++|..|+|||||+++++... +.....-..+.|....|...... ..-+.+......+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 57899999999999999998542 11110000012222222211111 011223333333221
Q ss_pred ---cCeEEEEEcCCCCCCcHHHH--------HHHHHhcCeEEEEEeCCCCCchh--HHHHHHHHHhcCCCeEEEEecCCc
Q 008294 153 ---NKHRINIIDTPGHVDFTLEV--------ERALRVLDGAICLFDSVAGVEPQ--SETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 153 ---~~~~i~liDTPG~~~f~~~~--------~~~l~~~D~~ilVvda~~g~~~~--~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
...++.+|||||..+-.... .......|.++.+||+....... ......++.. --++|+||+|+
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~ivlnk~dl 158 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRILLNKTDL 158 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEEEecccC
Confidence 24578999999987632222 22334569999999997533221 1112233333 33889999995
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.2e-06 Score=78.84 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
-+|++||.+.+|||||+..+. ..-+...+.+ -+|.......+.+++..|+++|.||...-
T Consensus 63 aRValIGfPSVGKStlLs~iT---~T~SeaA~ye---------------FTTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKIT---STHSEAASYE---------------FTTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred eEEEEecCCCccHHHHHHHhh---cchhhhhcee---------------eeEEEeecceEEecCceEEEecCcccccccc
Confidence 579999999999999999995 2111111110 12555555567778999999999997653
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc------CCCeEEEE-ecCCccc--------cchhhh
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY------GVPRICFV-NKMDRLG--------ANFFRT 227 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~------~~p~ivvi-NK~D~~~--------~~~~~~ 227 (571)
..++....+.||++++|.||+.... -++.+ ..+... ..|-|-+- .|.--.. .--+..
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~e~--qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~ 202 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKSED--QREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKL 202 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcchh--HHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHH
Confidence 3346667788999999999986422 22222 233322 23444332 1111110 001344
Q ss_pred HHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 008294 228 RDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 307 (571)
Q Consensus 228 ~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~ 307 (571)
+..|...+.++.+.+ -+.++-....+||++.....|... -+...-+
T Consensus 203 i~~ILheykI~Naev--l~ReD~t~DdfIDvi~gnr~Y~~C-----lYvYnKI--------------------------- 248 (364)
T KOG1486|consen 203 IYTILHEYKIHNAEV--LFREDCTVDDFIDVIEGNRVYIKC-----LYVYNKI--------------------------- 248 (364)
T ss_pred HHHHHHHHeeccceE--EEecCCChHHHHHHHhccceEEEE-----EEEeecc---------------------------
Confidence 555555555444332 234455555667777654443322 1111111
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCC
Q 008294 308 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLP 360 (571)
Q Consensus 308 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP 360 (571)
.+++.+|+-+..++ - .-+.+|+-.+.|++.|++.|.+.+-
T Consensus 249 ------D~vs~eevdrlAr~----P---nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 249 ------DQVSIEEVDRLARQ----P---NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ------ceecHHHHHHHhcC----C---CcEEEEeccccCHHHHHHHHHHHhc
Confidence 12344444333221 0 1234588899999999999998874
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-06 Score=87.06 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcccccchhhhh------hhceeEeeceEE-------E
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTATMDWMEQEQ------ERGITITSAATT-------T 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~~~d~~~~e~------~~g~t~~~~~~~-------~ 150 (571)
.+..+++++|++|+||||++..|.... |. .+.+-+... ++ .....|+ ..|+.+...... -
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D-~~-R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~ 211 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTD-SY-RIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA 211 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecc-cc-cccHHHHHHHHHHHcCCceEecCCcccHHHHHH
Confidence 345689999999999999999997432 21 111111110 00 0011121 123333222111 1
Q ss_pred eecCeEEEEEcCCCCCC---cHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-------EEEEecC
Q 008294 151 YWNKHRINIIDTPGHVD---FTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPR-------ICFVNKM 217 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~---f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-------ivviNK~ 217 (571)
.+.++.+.||||||... +..+....+..+ +-.++|++++.+....+...+......++|. =+|++|+
T Consensus 212 ~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 23578999999999764 344445555444 3458999999876666655555544443332 4788999
Q ss_pred Ccc
Q 008294 218 DRL 220 (571)
Q Consensus 218 D~~ 220 (571)
|-.
T Consensus 292 DEt 294 (374)
T PRK14722 292 DEA 294 (374)
T ss_pred ccC
Confidence 964
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.9e-06 Score=85.68 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=69.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccchh-hhhhhceeEeeceEEE-------------e
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAATTT-------------Y 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~~~-~e~~~g~t~~~~~~~~-------------~ 151 (571)
...|+++|..|+||||++..|.... |........+... ...+... .....++.+......- .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999996332 3211111111111 1111111 1112233222110000 0
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~------~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
..++.+.||||||...........+. ..|-++||+|+..|... ....+...+.--+.-+|+||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 13689999999997654333333222 34789999999876443 223333333333567899999964
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-06 Score=81.51 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=80.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~ 167 (571)
+.++|.++|.+|+|||++=..+..+--+ .+-...|-|++....+..+ ++..+++||+.|+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a-----------------~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~ 65 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIA-----------------RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE 65 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhh-----------------hhhhccCCcceeeehhhhhhhhheeehhccCCcHH
Confidence 3578999999999999998877521100 0112234466665555544 557899999999988
Q ss_pred cHHHHHH-----HHHhcCeEEEEEeCCCCCchhHHHHHH----HHHhc--CCCeEEEEecCCccccchhhh
Q 008294 168 FTLEVER-----ALRVLDGAICLFDSVAGVEPQSETVWR----QADKY--GVPRICFVNKMDRLGANFFRT 227 (571)
Q Consensus 168 f~~~~~~-----~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~~~--~~p~ivviNK~D~~~~~~~~~ 227 (571)
|.....+ -++..++.++|+|+.......+....+ .+.+. ...+++.+.|+|+...+..+.
T Consensus 66 fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 66 FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHH
Confidence 7655444 567789999999997544444433333 33332 345688899999987664443
|
|
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=65.92 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=59.9
Q ss_pred EEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccc
Q 008294 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (571)
Q Consensus 392 ~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~ 466 (571)
+.|..+|.....|.++.+||-+|++++|+.+...+.+ ..-+|.+|... ..++++|.+|+-|.| .+++++..
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCC
Confidence 3455555555668999999999999999999998887 44567776654 388999999999988 56778888
Q ss_pred ccee
Q 008294 467 GETL 470 (571)
Q Consensus 467 Gdtl 470 (571)
||+|
T Consensus 79 Gdvi 82 (84)
T cd03692 79 GDII 82 (84)
T ss_pred CCEE
Confidence 9886
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.9e-06 Score=84.08 Aligned_cols=143 Identities=18% Similarity=0.180 Sum_probs=85.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC-CcceeeeeecCccccc---chhhhhhhceeEeeceEEEee-------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTATMD---WMEQEQERGITITSAATTTYW------------- 152 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g-~~~~~g~~~~g~~~~d---~~~~e~~~g~t~~~~~~~~~~------------- 152 (571)
++...+.|..|+|||||+++|+.+.. .....--.+.|..-.| ......+.-..+..++++|+.
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 35778999999999999999996544 2222111111211112 111122224567777788773
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHH--------HHHhcCeEEEEEeCCCCCchhH---HHHHHHHHhcCCCeEEEEecCCc
Q 008294 153 --NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQS---ETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~--------~l~~~D~~ilVvda~~g~~~~~---~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+.....+|.|-|..+=...+.. ..-..|++|-|||+.+...... .....++.. --++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEecccC
Confidence 4567899999998874333322 2233488999999987655433 223333333 33899999999
Q ss_pred cccchhhhHHHHHHHh
Q 008294 220 LGANFFRTRDMIVTNL 235 (571)
Q Consensus 220 ~~~~~~~~~~~i~~~l 235 (571)
......+.++...+.+
T Consensus 158 v~~~~l~~l~~~l~~l 173 (323)
T COG0523 158 VDAEELEALEARLRKL 173 (323)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8866333333333333
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=73.51 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=40.5
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
.++.+.||||||... .....+..+|.+++|+....+ +-..+.....+..--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG----DDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch----hHHHHhhhhHhhhcCEEEEeCCC
Confidence 468999999999653 445689999999999977522 22222222333445599999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.2e-06 Score=77.66 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 162 TPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 162 TPG~~-~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
-|||. ....++...+..+|.+++|+|+.++.......++..+ .+.|.++|+||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 36764 3567788899999999999999877665544444433 368999999999985
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=82.03 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=80.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhh--hhceeEeeceEEEeec------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQ--ERGITITSAATTTYWN------------ 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~--~~g~t~~~~~~~~~~~------------ 153 (571)
+++...+.|..|+|||||+|+|+... |.....-..+.|..-.|..-... ..-.++..++++|...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 57889999999999999999999543 21111111122322223221111 1123455566666531
Q ss_pred -------CeEEEEEcCCCCCCcHHHHHHHH--------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 -------KHRINIIDTPGHVDFTLEVERAL--------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 -------~~~i~liDTPG~~~f~~~~~~~l--------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
.....+|.|.|..+-.......+ -..|++|.|||+.......... .....+...--+|++||+|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~IvlnK~D 161 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLTKTD 161 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCEEEEeccc
Confidence 25679999999988433322211 1248899999998643321111 0111222234489999999
Q ss_pred ccccchhhhHHHHHH
Q 008294 219 RLGANFFRTRDMIVT 233 (571)
Q Consensus 219 ~~~~~~~~~~~~i~~ 233 (571)
+.... .++.+.++.
T Consensus 162 l~~~~-~~~~~~l~~ 175 (318)
T PRK11537 162 VAGEA-EKLRERLAR 175 (318)
T ss_pred cCCHH-HHHHHHHHH
Confidence 98753 444455544
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.4e-06 Score=71.88 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|....|||||+-..+.... | .+-++..|+...-...++......+.+||..|+.+|.
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~---------------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEY---------------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchh---------------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 46899999999999999988761100 0 1223445655544444444455678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHhcCCCe--EEEEecCCcc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPR--ICFVNKMDRL 220 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~~~~p~--ivviNK~D~~ 220 (571)
...--+...+-++++++|-+..-+-....- .++++..+... |+|.+|-|+.
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 888888888899999999987555444433 46777665443 5788999964
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-06 Score=78.45 Aligned_cols=55 Identities=13% Similarity=-0.129 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+..|...+..+++.+|++++|+|+.+........++ ....++|+++|+||+|+..
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCC
Confidence 333677888889999999999999875544443332 2235789999999999864
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=80.30 Aligned_cols=144 Identities=23% Similarity=0.234 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceE-EEe----e------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAAT-TTY----W------ 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~-~~~----~------ 152 (571)
...+-|.++|.-..||||+++.|+.+...-.++|.- +-+ .+|.-..++.-.|.+..+..- .+. +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpE-PTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPE-PTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCC-CCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 445789999999999999999998554322222221 100 112112222333333222100 000 0
Q ss_pred -------c---CeEEEEEcCCCC-----------CCcHHHHHHHHHhcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCe
Q 008294 153 -------N---KHRINIIDTPGH-----------VDFTLEVERALRVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPR 210 (571)
Q Consensus 153 -------~---~~~i~liDTPG~-----------~~f~~~~~~~l~~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ 210 (571)
. =..+++|||||. .+|..........+|.+++++|+. -.+.....+++..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 0 136999999995 357777888889999999999997 356778888999999888888
Q ss_pred EEEEecCCccccc-hhhhHHHHH
Q 008294 211 ICFVNKMDRLGAN-FFRTRDMIV 232 (571)
Q Consensus 211 ivviNK~D~~~~~-~~~~~~~i~ 232 (571)
=||+||.|....+ +-++.-.+.
T Consensus 215 RVVLNKADqVdtqqLmRVyGALm 237 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQLMRVYGALM 237 (532)
T ss_pred EEEeccccccCHHHHHHHHHHHH
Confidence 8999999987643 334444333
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-05 Score=78.04 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=68.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc----ccc-hhhhhhhceeEeeceEE-------------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDW-MEQEQERGITITSAATT-------------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~----~d~-~~~e~~~g~t~~~~~~~-------------~ 150 (571)
....|+++|++|+||||++..|...........-+....++ .+. .......++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999996432111111111111000 000 11122334333211000 0
Q ss_pred eecCeEEEEEcCCCCCCcH----HHHHHHHH--------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 151 YWNKHRINIIDTPGHVDFT----LEVERALR--------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~----~~~~~~l~--------~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++.+.||||||..... .++....+ ..+..++|+|++.|..... ......+.--+.-+|+||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhCCCCEEEEECCC
Confidence 1256889999999976532 23333222 2477899999986543222 12222222224578999999
Q ss_pred cc
Q 008294 219 RL 220 (571)
Q Consensus 219 ~~ 220 (571)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 43
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=73.64 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=42.1
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHH------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.++.+.++||||...+.......+ ...|.+++|+|+..+.. .....+......+ ..-+|+||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 467799999999864433322222 23799999999965432 2233334444445 3567889999754
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.5e-06 Score=83.21 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.5
Q ss_pred CCCCC-cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 163 PGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 163 PG~~~-f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
|||.. ...++...+..+|++++|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 78754 567788899999999999999877666555554444 368999999999985
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.2e-05 Score=77.76 Aligned_cols=131 Identities=13% Similarity=0.108 Sum_probs=68.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCccccc-chh---hhhhhceeEeeceE-----E--------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMD-WME---QEQERGITITSAAT-----T-------- 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d-~~~---~e~~~g~t~~~~~~-----~-------- 149 (571)
.+.+.|+++|++|+||||++..|....... .+..-++....... ... --...|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999886332111 11111111110000 000 01233333211000 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHH-------HHH-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~-------~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
....++.+.||||||.......... ... ..|..++|+|+..+. ..........+.--+.-+|+||+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g~IlTKl 227 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTGIILTKL 227 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCEEEEEcc
Confidence 0125689999999997654333221 222 279999999997542 22222222222112457899999
Q ss_pred Ccc
Q 008294 218 DRL 220 (571)
Q Consensus 218 D~~ 220 (571)
|..
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 963
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=75.97 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC---CcceeeeeecCcccccc---hhhhhhhceeEeeceE-------------EEe
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDW---MEQEQERGITITSAAT-------------TTY 151 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g---~~~~~g~~~~g~~~~d~---~~~e~~~g~t~~~~~~-------------~~~ 151 (571)
+.|+++|++|+||||.+-.|..... ......+.+... .-.. ..--+.-|+.+..... .+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5789999999999999999974322 111111111110 0000 0001122332211100 001
Q ss_pred ecCeEEEEEcCCCCCCcHHHHH----HHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVE----RALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~----~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+++.+.||||||......+.. ..+. ..+-+++|+|++.+..... .........++. =++++|+|..
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 1457899999999776543322 2222 3478999999987543222 333333334444 5669999964
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-06 Score=78.99 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+.++++|++|+|||||+|+|+... ....+.+.. ...+.+.+|.......+ .....+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~--~~~t~~is~--------~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA--KQKTGEISE--------KTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc--chhhhhhhc--------ccCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 689999999999999999998321 111121110 01122334444443333 234689999998775
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.4e-06 Score=75.86 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+|+++|.+|+|||||+|+|+ +....... ...|+|.......+ +..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~---~~~~~~~~--------------~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR---SKKVCKVA--------------PIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh---cCCceeeC--------------CCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 4689999999999999999997 22111111 12355554433322 345899999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.1e-05 Score=78.81 Aligned_cols=144 Identities=21% Similarity=0.182 Sum_probs=80.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhh--------hhceeEeeceEEEee-------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQ--------ERGITITSAATTTYW------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~--------~~g~t~~~~~~~~~~------- 152 (571)
+++...+.|..|+|||||+++|+... |.....-..+.|..-.|..-... +.-+.+..++++|..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 46788999999999999999999643 21111111122322222211111 012333444444432
Q ss_pred --------cCeEEEEEcCCCCCCcHHHHHHH-------HHhcCeEEEEEeCCCCCchh----------------------
Q 008294 153 --------NKHRINIIDTPGHVDFTLEVERA-------LRVLDGAICLFDSVAGVEPQ---------------------- 195 (571)
Q Consensus 153 --------~~~~i~liDTPG~~~f~~~~~~~-------l~~~D~~ilVvda~~g~~~~---------------------- 195 (571)
......+|.|.|..+-...+... .-..|++|.|||+.......
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHET 162 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccc
Confidence 23578999999998854333221 12458999999997542110
Q ss_pred --HHHHHHHHHhcCCCeEEEEecCCccccc-hhhhHHHHHHHh
Q 008294 196 --SETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNL 235 (571)
Q Consensus 196 --~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 235 (571)
......++ ...-+|++||+|+...+ ..++.+.+++..
T Consensus 163 ~~~~~~~~Qi---~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~ 202 (341)
T TIGR02475 163 PLEELFEDQL---ACADLVILNKADLLDAAGLARVRAEIAAEL 202 (341)
T ss_pred hHHHHHHHHH---HhCCEEEEeccccCCHHHHHHHHHHHHHhC
Confidence 00111222 23458999999998754 445555555543
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=74.66 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH-hc-CCcceeeeeecCcccccchhhhhhhce---eEeeceEEEee-------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF-YT-GRNYKIGEVHEGTATMDWMEQEQERGI---TITSAATTTYW------------- 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~-~~-g~~~~~g~~~~g~~~~d~~~~e~~~g~---t~~~~~~~~~~------------- 152 (571)
|.+.+.|..|+|||||+++|+. .. +.....-..+.|..-.|.... .+.|+ .+......+..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l-~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELL-QEDGVPVVELNNGCICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHH-HTTT-EEEEECTTTESS-TTS-HHHHHHHHCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhh-cccceEEEEecCCCcccccHHHHHHHHHHHHH
Confidence 4678999999999999999993 22 221111111223222222111 12232 33333333321
Q ss_pred -c--CeEEEEEcCCCCCCcHHH-----HHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 153 -N--KHRINIIDTPGHVDFTLE-----VERALRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 153 -~--~~~i~liDTPG~~~f~~~-----~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
. .....||.|.|..+-... .....-..+.+|.|||+..-... ..... ...+...--++++||+|+...+
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~--~~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL--LREQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH--HHHHHCT-SEEEEE-GGGHHHH
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh--hhhcchhcCEEEEeccccCChh
Confidence 2 468899999997764333 12223345899999999653111 11111 1222234459999999998765
Q ss_pred h--hhhHHHHHH
Q 008294 224 F--FRTRDMIVT 233 (571)
Q Consensus 224 ~--~~~~~~i~~ 233 (571)
. .++.+.+++
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 2 344444444
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.5e-05 Score=70.67 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=54.6
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..+.+.++||||... .....++..+|.+++|+.+...-.......++.++..++|..+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 578999999997643 35667889999999999987654556667778888889999999999997543
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00026 Score=75.49 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=71.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcc-cccch-hhhhhhceeEeeceEE-------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAATT------------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~~------------- 149 (571)
....|.++|..|+||||++..|.... |........+.... ..+.. ..-...|+.+......
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35788999999999999888876321 32222111111110 00000 0012223332211000
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHH----HH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVE----RA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~----~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
....++.+.||||||......... .. ....|.+++|+|+..| ............ .++ .-+|+||+|-..
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~- 254 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDA- 254 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-
Confidence 011457899999999654322222 11 2245788999998653 222222222222 233 357889999532
Q ss_pred chhhhHHHHHHHhCC
Q 008294 223 NFFRTRDMIVTNLGA 237 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (571)
....+-.+...++.
T Consensus 255 -rgG~alsi~~~~~~ 268 (433)
T PRK10867 255 -RGGAALSIRAVTGK 268 (433)
T ss_pred -cccHHHHHHHHHCc
Confidence 12235555566664
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.1e-05 Score=83.83 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-------e--ecCcc-c--ccc---hhhhhhhc---e-------e
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-------V--HEGTA-T--MDW---MEQEQERG---I-------T 142 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-------~--~~g~~-~--~d~---~~~e~~~g---~-------t 142 (571)
.+.-+|+|.|.+++||||++|++++..-....+|. + .+|.. + .+- .......+ . .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34568999999999999999999965321111110 0 01110 0 000 00000000 0 1
Q ss_pred EeeceEEEeecC-------eEEEEEcCCCCCC---cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-E
Q 008294 143 ITSAATTTYWNK-------HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-I 211 (571)
Q Consensus 143 ~~~~~~~~~~~~-------~~i~liDTPG~~~---f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-i 211 (571)
-..+...+.|.. ..+.++|.||..- +...+......+|++|+|+.|..-.+......+..+.+. +|. +
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 112233344432 2689999999753 455566777889999999999876666666666666655 554 5
Q ss_pred EEEecCCcccc
Q 008294 212 CFVNKMDRLGA 222 (571)
Q Consensus 212 vviNK~D~~~~ 222 (571)
|+.||.|....
T Consensus 266 IlnnkwDasas 276 (749)
T KOG0448|consen 266 ILNNKWDASAS 276 (749)
T ss_pred EEechhhhhcc
Confidence 66788897544
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=73.69 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCCchhHHHHH-HHHHhcCCCeEEEEecCCccc
Q 008294 180 DGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivviNK~D~~~ 221 (571)
|.+++|+|+.++.......+. ..+...++|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999887666555444 456677899999999999853
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0003 Score=75.13 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=68.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCc--c-cccchh-hhhhhceeEeeceEEE-----------e
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGT--A-TMDWME-QEQERGITITSAATTT-----------Y 151 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~--~-~~d~~~-~e~~~g~t~~~~~~~~-----------~ 151 (571)
.....|+++|.+|+||||++..|....... .+..-+.... . ..+... .-...|+.+......- .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999999886332111 1111111111 0 000000 0112233222111000 0
Q ss_pred ecCeEEEEEcCCCCCCcHHHH------HHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCe-EEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEV------ERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPR-ICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~------~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~-ivviNK~D~~ 220 (571)
...+.+.||||||........ ...+..+|.+++|+|+..|. +....+..+ .+++ -+|+||+|-.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 134589999999976653332 23345679999999998762 222333333 2343 5789999953
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.5e-05 Score=79.46 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=66.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCccc----ccc-hhhhhhhceeEeeceE-----E--------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTAT----MDW-MEQEQERGITITSAAT-----T-------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~----~d~-~~~e~~~g~t~~~~~~-----~-------- 149 (571)
+.+.|+++|.+|+||||++..|....... .+.+-+ .+.++ .+. ...-..-|+.+..... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li-~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA-AGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe-cCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 45789999999999999888886432111 011111 11110 000 0011122322211100 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHH----HH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERA----LR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~----l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
....++.+.||||+|........... .+ ..|..++|+|+..|- ...+........--.--+++||+|..
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 01145779999999976533332222 22 358999999997653 22222222222212357889999974
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=82.84 Aligned_cols=115 Identities=18% Similarity=0.081 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-.+|+++|..|+|||||+-+|+........+-.. .-+++- ....-......++||+-..+-.
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---------------~~i~IP---advtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---------------PRILIP---ADVTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccC---------------CccccC---CccCcCcCceEEEecccccchh
Confidence 4578899999999999999998544322111110 112222 1112234458899999777666
Q ss_pred HHHHHHHHhcCeEEEEEeCCCC-----CchhHHHHHHHHH--hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAG-----VEPQSETVWRQAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g-----~~~~~~~~~~~~~--~~~~p~ivviNK~D~~~~ 222 (571)
......++.||++++|.+..+. ++.-..-+++..- -.++|+|+|.||+|....
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 6678889999999999977652 2222222222222 146899999999998653
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.8e-06 Score=75.78 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+++++|.+|+|||||+|+|+ +..... .....|+|.......+ +..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~---~~~~~~--------------~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLK---RSRACN--------------VGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHh---Ccccce--------------ecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 334689999999999999999997 211111 1123567776554433 246899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-05 Score=74.64 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=54.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.++..|+|+|+.++|||||+|+|+.... .-..+. .. ....+|+-+....... ..+..+.++||||..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~-~f~~~~-----~~-----~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLS-GFDVMD-----TS-----QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCC-CeEecC-----CC-----CCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 4578999999999999999999973210 111111 00 1112333322221111 1457899999999865
Q ss_pred c------HHHHHHHHHh--cCeEEEEEeCCC
Q 008294 168 F------TLEVERALRV--LDGAICLFDSVA 190 (571)
Q Consensus 168 f------~~~~~~~l~~--~D~~ilVvda~~ 190 (571)
. ......++.. +|.+|+.++...
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 3 2223455555 899998888753
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.4e-06 Score=85.87 Aligned_cols=131 Identities=10% Similarity=0.144 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++++++|.+|+|||||+|+|+.......... + ....+|+|.......+ +..+.++||||.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~------~------~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~- 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVI------T------TSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH- 218 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCccee------e------ecCCCCeEeeEEEEEe---CCCCEEEECCCCCChh-
Confidence 6899999999999999999985432111100 0 1122567776554433 2346899999986531
Q ss_pred HHHHHH-----------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhHHHHHHHhCC
Q 008294 171 EVERAL-----------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (571)
Q Consensus 171 ~~~~~l-----------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (571)
++...+ .......+.+|....+.......+..+......+.++++|.+.... +.++..+-+++.+|.
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 111111 1235566667665432222211112222234455667777776543 444445555555554
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=71.80 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCCCc------HHHHHHHHHhcC---eEEEEEeCCCCCch-----hHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 154 KHRINIIDTPGHVDF------TLEVERALRVLD---GAICLFDSVAGVEP-----QSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 154 ~~~i~liDTPG~~~f------~~~~~~~l~~~D---~~ilVvda~~g~~~-----~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+-.+.++|+||+.+. .....+.+.+.+ ++++++|+.--+.. .....+..+....+|.|=|++|||+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 346889999998763 566666776643 47788887642221 2223344555678999999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 754
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.2e-05 Score=78.69 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=66.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC-CcceeeeeecCcccccchhhhh----hhceeEeeceEE---------Ee-ec
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTATMDWMEQEQ----ERGITITSAATT---------TY-WN 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g-~~~~~g~~~~g~~~~d~~~~e~----~~g~t~~~~~~~---------~~-~~ 153 (571)
+.+.|+++|+.|+||||++..|..... .-.+.+-+...+.......+-+ .-|+.+...... +. ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 357899999999999999999963321 1111221111110000000000 112222111000 00 02
Q ss_pred CeEEEEEcCCCCCCc----HHHHHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDF----TLEVERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f----~~~~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++.+.||||||.... ..++...+.. .|.++||+|++.+.. .....++.....+ .-=++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~-idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCC-CCEEEEEcccCCC
Confidence 468999999997553 3333333332 377899999864321 1233333333322 2357899999643
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.6e-06 Score=77.86 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcce-eeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYK-IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~-~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
.+++++|.+|+|||||+|+|+.......+ .+. ......+|+|.......+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~----------~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDL----------LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccc----------cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 58999999999999999999843211100 000 0111234778877666553 25899999995
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=73.63 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+++++|.+|+|||||+|+|+...... ....+|+|.......+ +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-----------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-----------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 346789999999999999999997321111 1112355655554433 256999999994
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=80.12 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=44.5
Q ss_pred CCCCCC-cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 162 TPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 162 TPG~~~-f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
-|||.. -..++...+..+|++++|+|+..+.......+...+. +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 478754 4667888999999999999998877665554444432 78999999999985
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.9e-05 Score=79.84 Aligned_cols=131 Identities=20% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcccccchhhhh----hhceeEeeceEE------E-eec
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMDWMEQEQ----ERGITITSAATT------T-YWN 153 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~~~d~~~~e~----~~g~t~~~~~~~------~-~~~ 153 (571)
+....|+|+|..|+||||++..|.... +...+..-+............-. ..|+.+...... + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 345799999999999999999987421 10011111111010000011111 112222111000 0 114
Q ss_pred CeEEEEEcCCCCCCcHHHHHH---HHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVER---ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~---~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
++.+.||||||.......... .+. .....++|+++..+..... +.++..... .+.-+|+||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 688999999997543222111 111 1245678888876433322 333333333 4667999999974
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=70.35 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=47.3
Q ss_pred CeEEEEEcC-CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CCeEEEEecCCcc
Q 008294 154 KHRINIIDT-PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDT-PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~ 220 (571)
.+.+.++|| +|.+.|... ..+.+|.+|+|+|++..--...+++-+...+.+ .++.+|+||+|-.
T Consensus 133 ~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 366888888 455555432 345789999999998655556667777788888 7888999999954
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=82.40 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=39.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.++|+|.+|+|||||+|+|+... ....|.+.. ...+.+.+|.....+.+..+ ..||||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~--~~~t~~is~--------~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA--EILVGDVSD--------NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc--ceeeccccC--------cCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 58999999999999999997221 122222210 01122345555554444323 359999998875
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0012 Score=70.48 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=71.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCcc-cccch-hhhhhhceeEeeceE-----E--------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-----T-------- 149 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~-----~-------- 149 (571)
+...+.++|++|+||||++-.|... .|........+.... ..+.. ..-...|+.+..... .
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 3568899999999999998888643 222111111111100 00000 001122222211100 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
....++.+.||||||........... ....|.+++|+|+..+ ............ .++ .=+|+||+|-..
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~~~- 253 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDGDA- 253 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccCcc-
Confidence 01145789999999965432222221 2236889999999754 222222222221 223 347799999432
Q ss_pred chhhhHHHHHHHhCC
Q 008294 223 NFFRTRDMIVTNLGA 237 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (571)
....+..+...++.
T Consensus 254 -~~G~~lsi~~~~~~ 267 (428)
T TIGR00959 254 -RGGAALSVRSVTGK 267 (428)
T ss_pred -cccHHHHHHHHHCc
Confidence 12235556666664
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00025 Score=66.38 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHH
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTN 234 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~ 234 (571)
.+.+|||||..+. ....++..+|.+|+|+++...-.......++.+...+.+ ..+|+|++|.......+.++.+++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 7999999986553 466788999999999998765555555666666666655 4588999987554444556777777
Q ss_pred hCCc
Q 008294 235 LGAK 238 (571)
Q Consensus 235 l~~~ 238 (571)
++..
T Consensus 142 ~~~~ 145 (179)
T cd02036 142 LGVP 145 (179)
T ss_pred hCCC
Confidence 7754
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.5e-05 Score=75.08 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=38.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
...+++++|.+|+|||||+|+|..... ...+ ...|+|.......+ +..+.|+||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~--~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV--AKVG---------------NRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc--cccC---------------CCCCeecceEEEEe---CCCEEEEECCCc
Confidence 457899999999999999999962110 1111 12455665544333 236899999998
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.4e-05 Score=78.06 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe------------------e
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------W 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~------------------~ 152 (571)
.+++|||.||+|||||+|++..... .... ++.+ ||........ +
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a---~~aN-YPF~--------------TIePN~Giv~v~d~rl~~L~~~~~c~~k~ 64 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA---EIAN-YPFC--------------TIEPNVGVVYVPDCRLDELAEIVKCPPKI 64 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc---cccC-CCcc--------------cccCCeeEEecCchHHHHHHHhcCCCCcE
Confidence 5799999999999999999963321 1111 1111 1111111111 1
Q ss_pred cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
....+.|+|.+|... ........+|.+|+++.|||+.+
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 235689999999865 46668889999999999999983
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-05 Score=70.38 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..++++|.+|+|||||+|+|+.. .....+. ..|.|.......+ + ..+.||||||..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~---~~~~~~~--------------~~~~~~~~~~~~~--~-~~~~i~DtpG~~ 139 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGK---KKVSVSA--------------TPGKTKHFQTIFL--T-PTITLCDCPGLV 139 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CceeeCC--------------CCCcccceEEEEe--C-CCEEEEECCCcC
Confidence 37999999999999999999722 1111111 1233444333333 2 268999999963
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.8e-05 Score=61.53 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=63.5
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccce
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGET 469 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdt 469 (571)
.+.|.....+++.|.++.+-|.+|+|+.||.+....... ||+.|+...| .++++|.||+.|-|.|++++ .+||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~g--kVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYG--KVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccccc--EEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 467888889999999999999999999999998765332 6777766665 77999999999999999886 56877
Q ss_pred ec
Q 008294 470 LC 471 (571)
Q Consensus 470 l~ 471 (571)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 64
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.8e-05 Score=76.74 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+++++|.+|+|||||+|+|.... ....+ ...|+|.......+ +..+.|+||||...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~--~~~~~---------------~~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKK--IAKTG---------------NRPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCC--ccccC---------------CCCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 345689999999999999999997211 01111 12466776654333 34689999999753
|
|
| >cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=62.05 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCCeEEEEEEEeecC--------CCceEEEEEEecceeCCCCEEEeCCC-------Cc-----eeecceEEEeccCcee
Q 008294 386 DDEPFAGLAFKIMSDP--------FVGSLTFVRVYAGTLSAGSYVLNANK-------GK-----KERIGRLLEMHANSRE 445 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~--------~~G~i~~~rV~sG~l~~gd~v~~~~~-------~~-----~~~i~~i~~~~g~~~~ 445 (571)
.+.|+.|+|.++|... ..|.++-|+|.+|.|+.||.|-..+. +. ..+|.+|+.. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~----~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE----NN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec----Cc
Confidence 3678899999998655 77899999999999999999964421 11 2334444433 37
Q ss_pred ecCeecCCCEEEE-eCCCC-cccccee
Q 008294 446 DVKVALAGDIIAL-AGLKD-TITGETL 470 (571)
Q Consensus 446 ~v~~a~aGdiv~i-~gl~~-~~~Gdtl 470 (571)
.+++|.||+.++| ++|+. +.++|.|
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l 104 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRL 104 (113)
T ss_pred cccEEeCCCeEEEccccCcccccccee
Confidence 8999999999999 66664 3334444
|
eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.7e-05 Score=79.23 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+++|++|+|||||+|+|... ...+.+.+.. ...+.+.+|.......+..++ .||||||...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~--~~~~t~eIS~--------~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE--LNQKTGEISE--------KLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch--hhhhhhhhcc--------cCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 47889999999999999999721 1112222110 011234456666655554344 69999998775
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=74.09 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCC-cceeeeeecCcc----cccchhhhhhhceeEeeceE--EE-------e-e
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA----TMDWMEQEQERGITITSAAT--TT-------Y-W 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~-~~~~g~~~~g~~----~~d~~~~e~~~g~t~~~~~~--~~-------~-~ 152 (571)
.+.+.++++|+.|+||||++..|...... ..+.+-+...+. ...+...-..-|+.+....- .+ . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 34678999999999999999999743211 111221211110 00111011111221111000 00 0 0
Q ss_pred cCeEEEEEcCCCCCCcHHH----HHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhc-CC-CeEEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTLE----VERALR--VLDGAICLFDSVAGVEPQSETVWRQADKY-GV-PRICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~----~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~-p~ivviNK~D~~ 220 (571)
.++.+.||||||......+ +..... ..|.+++|+++.. ..+. ....+..+ .+ +--++++|+|-.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 3579999999998544333 222222 2266678887732 3222 22233222 22 235789999964
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=70.34 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=83.2
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-eecCc--ccccchhhhhhhc------eeEeeceEEEee-
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGT--ATMDWMEQEQERG------ITITSAATTTYW- 152 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-~~~g~--~~~d~~~~e~~~g------~t~~~~~~~~~~- 152 (571)
...+..+++.-.|.|..|+|||||+|.++...+..+...- .+.|. ..-...-.+++.| +....++.+|..
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk 129 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK 129 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence 3456678899999999999999999999844332221110 01111 0000000011111 234455566654
Q ss_pred --------------cCeEEEEEcCCCCCCcHHHHHH--------HHHhcCeEEEEEeCCCCCchhHH----HHHHHH-Hh
Q 008294 153 --------------NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQSE----TVWRQA-DK 205 (571)
Q Consensus 153 --------------~~~~i~liDTPG~~~f~~~~~~--------~l~~~D~~ilVvda~~g~~~~~~----~~~~~~-~~ 205 (571)
+.+...++.|-|.++=...... .--..|++|-|||+.+.....++ -+|..+ .+
T Consensus 130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 3467899999999884332222 22235999999999864322211 112111 11
Q ss_pred cCCCeEEEEecCCccccc-hhhhHHHHHHHh
Q 008294 206 YGVPRICFVNKMDRLGAN-FFRTRDMIVTNL 235 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l 235 (571)
-...--+++||.|+.... ...+.+.|+...
T Consensus 210 iA~AD~II~NKtDli~~e~~~~l~q~I~~IN 240 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSEEEVKKLRQRIRSIN 240 (391)
T ss_pred HhhhheeeeccccccCHHHHHHHHHHHHHhh
Confidence 112225789999997743 444555555433
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.5e-05 Score=76.70 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEee-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----------------- 152 (571)
.+++|||.+|+|||||+|+|. +... ..... +.+ |+......+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT---~~~~~~~a~y-pft--------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~ 64 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATT---NLLGNEAANP-PFT--------------TIEPNAGVVNPSDPRLDLLAIYIKPEKV 64 (368)
T ss_pred ceEEEECCCCCChHHHHHHHh---CCCccccCCC-CCC--------------CCCCceeEEEechhHHHHHHHHhCCcCc
Confidence 578999999999999999995 3222 11111 111 12222211111
Q ss_pred cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
....+.++|.||... ........++.+|++++|||+.+
T Consensus 65 ~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 65 PPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 234689999999765 44568889999999999999863
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.7e-05 Score=76.21 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..++++|++|+|||||+|+|+.... .+.+.+.. ...+.+++|.......+ .+ -.||||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~--~~t~~i~~--------~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK--QQVNDISS--------KLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh--ccccceec--------cCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 4789999999999999999983211 11122110 00112345666555555 22 379999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.8e-05 Score=71.07 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=38.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
....+++++|.+|+|||||+|+|+.... .... ...|+|.......+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~---~~~~--------------~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKV---AKVG--------------NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc---eeec--------------CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457899999999999999999972211 0111 112456555544442 56899999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.003 Score=65.94 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC-CcceeeeeecCccc---ccc-hhhhhhhceeEeeceE-------------E
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG-RNYKIGEVHEGTAT---MDW-MEQEQERGITITSAAT-------------T 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g-~~~~~g~~~~g~~~---~d~-~~~e~~~g~t~~~~~~-------------~ 149 (571)
+..-.|.++|--|+||||.+..|.+... ...+.+-+...+.. .+. ...-.+.|+.+..... .
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999998863321 11111111111000 000 0011112222111100 0
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~ 222 (571)
+....+.+.|+||+|-.....++..- .-..|=+++|+||.-|...... ...-...+++ =+|++|+|-..
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~---A~aF~e~l~itGvIlTKlDGda- 253 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT---AKAFNEALGITGVILTKLDGDA- 253 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH---HHHHhhhcCCceEEEEcccCCC-
Confidence 01145789999999965543333332 2334889999999876443221 1111223444 47899999432
Q ss_pred chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecc-cHHHHHHHHH--HHHHHHHHH
Q 008294 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDI-PANLQKMAQE--YRSQMIETI 299 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~~~~l~e~~ 299 (571)
.--..-+++...|.++. . ++.+++..+ +++| |+.+.++.-. ....|+|.+
T Consensus 254 -RGGaALS~~~~tg~PIk---F-iGtGEki~d----------------------LE~F~P~R~asRILGMGDv~sLvEk~ 306 (451)
T COG0541 254 -RGGAALSARAITGKPIK---F-IGTGEKIDD----------------------LEPFHPDRFASRILGMGDVLSLIEKA 306 (451)
T ss_pred -cchHHHhhHHHHCCCeE---E-EecCCCccc----------------------CCCcChHHHHHHhcCcccHHHHHHHH
Confidence 11223344555554221 0 122222211 1122 2222222111 123455555
Q ss_pred hhc-----CHHHHHHHhcCCCCCHHHHHHHHHhhccc
Q 008294 300 VEL-----DDEAMESYLEGNEPDEETIKKLIRKGTIA 331 (571)
Q Consensus 300 ~~~-----~~~l~e~~l~~~~~~~~~l~~~l~~~~~~ 331 (571)
.+. .+++.++...|. ++-+++.+.+++.-..
T Consensus 307 ~~~~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~km 342 (451)
T COG0541 307 EEVVDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKM 342 (451)
T ss_pred HHhhhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHcc
Confidence 443 245666777766 8888888877765433
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00031 Score=74.46 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=65.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc--C-CcceeeeeecCcccccchhhh----hhhceeEeeceEE-------EeecC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT--G-RNYKIGEVHEGTATMDWMEQE----QERGITITSAATT-------TYWNK 154 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~--g-~~~~~g~~~~g~~~~d~~~~e----~~~g~t~~~~~~~-------~~~~~ 154 (571)
....|+++|+.|+||||++..|.... . .....+-+...+......+.. ...|+........ ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45689999999999999999886431 1 011112211111111111111 1223322211110 11256
Q ss_pred eEEEEEcCCCCCCcHHHHHH---HHHh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 155 HRINIIDTPGHVDFTLEVER---ALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~---~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+.+.+|||+|.......... .+.. .+-.+||+|++.+... ..+........+ .-=++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~-~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT-LDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 78999999997654333222 2322 2457899999753221 122222222222 234789999964
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=75.06 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=35.1
Q ss_pred HHHhcCeEEEEEeCCCCC-ch-hHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 175 ALRVLDGAICLFDSVAGV-EP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~-~~-~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++..+|.+++|+|+.+.. .. .....+..+...++|+++|+||+|+..
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 578899999999997543 33 223444555667999999999999863
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=65.37 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
+++..++..+|++++|+|+.++...+...+.+.+... ++|+++|+||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 5678899999999999999988877777777777665 899999999999864
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.7e-05 Score=79.15 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=37.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.++|+|.+|+|||||+|+|+.... ...+.+.. ...+.+.+|.......+..+ ..||||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~--~~t~~vs~--------~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE--LRVGKVSG--------KLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc--cccccccC--------CCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 589999999999999999972211 11121110 01122335555544433222 279999998664
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00042 Score=66.12 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=74.0
Q ss_pred EEEEcCCCCchHHHHHHHH---HhcCCcceeeeeecCcccccchh------------hhhhhceeEeec--------eEE
Q 008294 93 IGIMAHIDAGKTTTTERVL---FYTGRNYKIGEVHEGTATMDWME------------QEQERGITITSA--------ATT 149 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll---~~~g~~~~~g~~~~g~~~~d~~~------------~e~~~g~t~~~~--------~~~ 149 (571)
-+|||++|+||||.++.+. ...|........++++..+.|.. ...+.|.--+.+ ...
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 4699999999999998664 33454444455566554333211 111222111111 011
Q ss_pred Eee-------cCeEEEEEcCCCCCCc------HHHHHHHHHhcCeEE---EEEeCCCCCch-----hHHHHHHHHHhcCC
Q 008294 150 TYW-------NKHRINIIDTPGHVDF------TLEVERALRVLDGAI---CLFDSVAGVEP-----QSETVWRQADKYGV 208 (571)
Q Consensus 150 ~~~-------~~~~i~liDTPG~~~f------~~~~~~~l~~~D~~i---lVvda~~g~~~-----~~~~~~~~~~~~~~ 208 (571)
++| ....+.++|+||+.++ ...+.+.++..|.-+ -++|+.---.+ .....+..+..+..
T Consensus 85 idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~mel 164 (290)
T KOG1533|consen 85 IDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMEL 164 (290)
T ss_pred hHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcc
Confidence 122 2467899999998764 455667777777644 44555421111 11223344556789
Q ss_pred CeEEEEecCCccc
Q 008294 209 PRICFVNKMDRLG 221 (571)
Q Consensus 209 p~ivviNK~D~~~ 221 (571)
|++=|+.|+|+..
T Consensus 165 phVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 165 PHVNVLSKADLLK 177 (290)
T ss_pred cchhhhhHhHHHH
Confidence 9999999999864
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.2e-05 Score=71.71 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
-+++++|.+.+|||||+..|. |......+. -+.|.........+++.++.+.|.||..+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~vasy---------------efttl~~vpG~~~y~gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSEVAAY---------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCccccc---------------cceeEEEecceEeccccceeeecCcchhcccc
Confidence 378999999999999999995 433322221 123444445555678899999999998663
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCch
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEP 194 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~ 194 (571)
..+++...+.+.++++|.|+...+..
T Consensus 122 dgkgrg~qviavartcnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDVLKPLSH 152 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeeccCcccH
Confidence 34466677888999999999876543
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=72.29 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHHHHHhcCeEEEEEeCCCCC-chhHHHH-HHHHHhcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGV-EPQSETV-WRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~-~~~~~~~-~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....++.+|.+++|+|+.+.. .....+- +..+...++|.++|+||+|+..
T Consensus 30 ~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 30 TRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred ECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 334688999999999998644 3333333 3455567899999999999854
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.6e-05 Score=78.01 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc-CCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT-GRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~-g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+++.++|.+|+|||||+|+|+... +..... .....+|+|.......+. ....++||||...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~-------------~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVI-------------TTSRFPGTTLDKIEIPLD---DGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceE-------------EecCCCCccceeEEEEcC---CCcEEEECCCccc
Confidence 579999999999999999998432 211110 011235777766554442 2258999999753
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.3e-05 Score=76.67 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=40.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...++++|-+|+|||||+|+|+.... ... ....|+|.....+.+. ..+.|+||||..-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~---~~~--------------s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~ 189 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV---AKT--------------SNRPGTTKGIQWIKLD---DGIYLLDTPGIIP 189 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc---eee--------------CCCCceecceEEEEcC---CCeEEecCCCcCC
Confidence 45699999999999999999972222 111 1124777766655543 4499999999643
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.5e-06 Score=75.65 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=77.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC---eEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~liDTPG~ 165 (571)
....+.|+|..++|||+++.+.+++......... -|+.+... .+.|+. .++.|||..|+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAt----------------Igvdfalk--Vl~wdd~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRAT----------------IGVDFALK--VLQWDDKTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHH----------------HhHHHHHH--HhccChHHHHHHHHhcchhh
Confidence 3567889999999999999999854332111000 01111111 123332 46789999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh------cC--CCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YG--VPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~------~~--~p~ivviNK~D~~~ 221 (571)
+.|...+.-+++.+.++++|+|.+...+......|.+-.. .+ +|.++..||+|...
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 9999888889999999999999997766555555543221 23 45577789999754
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.8e-05 Score=75.02 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+.++++|++|+|||||+|+|+.... ...|.+.. .....+++|.......+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~--~~~g~v~~--------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD--LATGEISE--------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh--ccccceec--------cCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 6799999999999999999972211 11121110 01122335555544444322 379999999775
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0006 Score=68.26 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCC-cceeeeeecCcccccchhh----hhhhceeEeeceEE---------E-eec
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTATMDWMEQ----EQERGITITSAATT---------T-YWN 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~-~~~~g~~~~g~~~~d~~~~----e~~~g~t~~~~~~~---------~-~~~ 153 (571)
+...++++|..|+||||++..|...... ....+-+............ -..-|+.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3469999999999999999988643211 1122222211110000000 01112222111000 0 013
Q ss_pred CeEEEEEcCCCCCCcH----HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFT----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~----~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
++.+.||||||..... .++...+. ..|-.++|+|++.+.. ...+.++.....+ +-=++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~-~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCC-CCEEEEEeecCCC
Confidence 5789999999976432 33333332 2367899999864321 2222333333222 2357899999654
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0002 Score=71.81 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+...++|||.+|+|||||+|+|... ....+.+ + -.||+........
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~---~a~~~Nf-P--------------F~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~ 80 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKS---KAGAANF-P--------------FCTIDPNEARVEVPDSRFDLLCPIYGPKS 80 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcC---CCCccCC-C--------------cceeccccceeecCchHHHHHHHhcCCcc
Confidence 4568999999999999999999622 1111111 1 1234333333221
Q ss_pred -cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 -NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 -~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
-...+++.|.+|... ........+|.+|+++.||++.+
T Consensus 81 ~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 81 KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 134699999999765 34557788999999999998873
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=72.44 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHhcCeEEEEEeCCCCC-chhH-HHHHHHHHhcCCCeEEEEecCCccc
Q 008294 176 LRVLDGAICLFDSVAGV-EPQS-ETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~-~~~~-~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+..+|.+++|+|+.+.. .... ...+..+...++|.++|+||+|+..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 56789999999998775 4333 2334456678999999999999854
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=59.76 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccccchhhhHHHHH
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDMIV 232 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~i~ 232 (571)
+.+.++|||+..+ ......+..+|.+++|++....-...+...++.+... ..+..+|+|+++.. .+..++.+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHHHHHHHHH
Confidence 7899999998654 4456789999999999988643333444555555332 35667999999743 22333444443
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=71.06 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...++.|+|-+|+|||||+|++........+..+ .| .+.|+|+..+..........+.++||||..-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~--vG----------~~pGVT~~V~~~iri~~rp~vy~iDTPGil~ 208 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAAR--VG----------AEPGVTRRVSERIRISHRPPVYLIDTPGILV 208 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhcccee--cc----------CCCCceeeehhheEeccCCceEEecCCCcCC
Confidence 34578999999999999999999744433332211 11 2478898888755445667799999999532
Q ss_pred -cHHHHHHHHHhcCeEEEEEeC
Q 008294 168 -FTLEVERALRVLDGAICLFDS 188 (571)
Q Consensus 168 -f~~~~~~~l~~~D~~ilVvda 188 (571)
-....+.+++.| .+.+|-|.
T Consensus 209 P~I~~~e~~lKLA-L~g~Vkd~ 229 (335)
T KOG2485|consen 209 PSIVDVEDGLKLA-LCGLVKDH 229 (335)
T ss_pred CCCCCHHHhhhhh-hccccccc
Confidence 223344444443 23344444
|
|
| >cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00067 Score=57.68 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=65.8
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEeccC-------ceeecCeec--CCCEEEEe
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEMHAN-------SREDVKVAL--AGDIIALA 459 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g~-------~~~~v~~a~--aGdiv~i~ 459 (571)
.+.|.....+++.|..+-+-|++|+|+.||.|....... ..||+.|+...+. +...++++. +|--+...
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 466788888999999999999999999999998766543 3578888888773 335788888 78888888
Q ss_pred CCCCccccceec
Q 008294 460 GLKDTITGETLC 471 (571)
Q Consensus 460 gl~~~~~Gdtl~ 471 (571)
||+++..|+.|.
T Consensus 82 gL~~v~aG~~~~ 93 (110)
T cd03703 82 DLEKAIAGSPLL 93 (110)
T ss_pred CCccccCCCEEE
Confidence 999998898764
|
aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00028 Score=72.10 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=34.0
Q ss_pred HHHhcCeEEEEEeCCCCCc-hh-HHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 175 ALRVLDGAICLFDSVAGVE-PQ-SETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~-~~-~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+..+|.+++|+|+.+... .. ....+..+...++|.++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 3678899999999975432 22 2334455667899999999999985
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00084 Score=70.69 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=64.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCccc-ccchhhh-hhhceeEeece------EEEeecCeEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTAT-MDWMEQE-QERGITITSAA------TTTYWNKHRI 157 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~~-~d~~~~e-~~~g~t~~~~~------~~~~~~~~~i 157 (571)
...++++|++|+||||++..|.... |........+..... .+..... ...|+...... ..+...++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568999999999999999997422 211111111111100 0000000 11122211100 0001146789
Q ss_pred EEEcCCCCCCcHH----HHHHHHHh-----cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 158 NIIDTPGHVDFTL----EVERALRV-----LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 158 ~liDTPG~~~f~~----~~~~~l~~-----~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.||||||...... ++...+.. ..-.+||+|++.+.... ..........+ +-=+|++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCC-CCEEEEEcccCC
Confidence 9999999764322 22222322 23578999998753222 22333222222 335789999964
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=73.21 Aligned_cols=54 Identities=19% Similarity=0.024 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+|...+......+|++++|+|+.+.......++.+.+ .+.|+++|+||+|+..
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 45666666666788999999999876555444444333 2789999999999864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=68.71 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc-------CCcceeeeeecCcc-cccchhh-hhhhceeEeeceEE-------Eee
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT-------GRNYKIGEVHEGTA-TMDWMEQ-EQERGITITSAATT-------TYW 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~-------g~~~~~g~~~~g~~-~~d~~~~-e~~~g~t~~~~~~~-------~~~ 152 (571)
....|+++|+.|+||||.+..|.... |........+.... ..+.... -..-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35689999999999999999887432 11111111111100 0000000 01122222111100 011
Q ss_pred cCeEEEEEcCCCCCCc----HHHHHHHHHhc--C-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDF----TLEVERALRVL--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f----~~~~~~~l~~~--D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.++.+.||||||.... ..++...+... + -.++|+|++.+..... +.+......+ +-=++++|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 5789999999997542 23444444433 3 5889999987633222 3333322222 346889999963
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0009 Score=69.56 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC---CcceeeeeecCcccccchhhhh------hhceeEeeceEEE-------ee
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTATMDWMEQEQ------ERGITITSAATTT-------YW 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g---~~~~~g~~~~g~~~~d~~~~e~------~~g~t~~~~~~~~-------~~ 152 (571)
+.+.|++||++|+||||-+-.|..... ...+.+-+...+... -..|+ .-|+.+......- ..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI--GAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh--hHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 478999999999999999999974332 122222221111000 01111 1122222211110 01
Q ss_pred cCeEEEEEcCCCCCCc----HHHHHHHHHhc--CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDF----TLEVERALRVL--DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f----~~~~~~~l~~~--D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.++++.|+||.|...+ ..++...+..+ .-..||++++.. .....+++......++. =++++|+|-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 5789999999997654 33344444333 446678887542 12222333333333322 36789999653
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00085 Score=71.78 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=65.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC---CcceeeeeecCcc---cccchhh-hhhhceeEeeceEEE-------eecCe
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG---RNYKIGEVHEGTA---TMDWMEQ-EQERGITITSAATTT-------YWNKH 155 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g---~~~~~g~~~~g~~---~~d~~~~-e~~~g~t~~~~~~~~-------~~~~~ 155 (571)
.+.++++|+.|+||||++..|....- .-.+.+-+...+. ..+.... -...|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999998863221 1112221111110 0000000 011222221110000 11467
Q ss_pred EEEEEcCCCCCCcH----HHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 156 RINIIDTPGHVDFT----LEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 156 ~i~liDTPG~~~f~----~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+.||||||+.... .++...+..+ +-+++|++++.+. ....+.+......++ --++++|+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 89999999986542 2333333312 3568889986532 222333444443332 35889999973
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0026 Score=67.34 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=84.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc------CCc--ceee--eeecCc----------ccccchh------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT------GRN--YKIG--EVHEGT----------ATMDWME------------ 134 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~------g~~--~~~g--~~~~g~----------~~~d~~~------------ 134 (571)
.++.+.|++||.-.+|||+.++.+.... |.. +.+. ....|- +-.|-.+
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3567899999999999999999886321 100 0011 111111 1111111
Q ss_pred ----hhhhhceeEeeceEEEeecC---eEEEEEcCCCCCC-------------cHHHHHHHHHhcCeEEEEEe-CCCC-C
Q 008294 135 ----QEQERGITITSAATTTYWNK---HRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFD-SVAG-V 192 (571)
Q Consensus 135 ----~e~~~g~t~~~~~~~~~~~~---~~i~liDTPG~~~-------------f~~~~~~~l~~~D~~ilVvd-a~~g-~ 192 (571)
.....|.|+....+++..++ .+..|+|.||... .......++...+++|+||- ++-. -
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 12356888888888888755 4789999999653 23334455667788888873 2211 1
Q ss_pred chhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 193 EPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
...--.+..++.-.|...|+|++|+|+...+
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 1222234455666788899999999997654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00021 Score=65.52 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...+++++|.+|+|||||+|+|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00022 Score=72.84 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|+|+
T Consensus 165 k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999997
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00097 Score=62.06 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=58.0
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccc------
Q 008294 153 NKHRINIIDTPGHVDFTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGAN------ 223 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------ 223 (571)
.++.+.++|||+... ......+ ..+|.+++|+.+...-.......++.+.+.+.+++ +|+|+.+....+
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~ 143 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIY 143 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCccc
Confidence 578899999999753 3333333 57899999998876555667788888888888875 678999853211
Q ss_pred --hhhhHHHHHHHhCC
Q 008294 224 --FFRTRDMIVTNLGA 237 (571)
Q Consensus 224 --~~~~~~~i~~~l~~ 237 (571)
....++.+.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 144 IFGKGGGEKLAEELGV 159 (169)
T ss_pred ccCCccHHHHHHHcCC
Confidence 12345666666544
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00083 Score=71.22 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=74.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcc-----------eeeeeecCcccccchhhhhhhceeEeeceEEEeecCeE
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNY-----------KIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR 156 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-----------~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 156 (571)
..+++|+|+|++|+|||||+++|....|... ..+.......+.|+.+....+......... ...+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~----~a~~ 292 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVK----YANK 292 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHH----hcCC
Confidence 3478999999999999999999987655431 112112222334443333333222222111 1245
Q ss_pred EEEEcCCCCCC----------cHHHHHHHHH--hcCeEEEEEeCC-----CCCchh---------HHHHHHHHHhcCCCe
Q 008294 157 INIIDTPGHVD----------FTLEVERALR--VLDGAICLFDSV-----AGVEPQ---------SETVWRQADKYGVPR 210 (571)
Q Consensus 157 i~liDTPG~~~----------f~~~~~~~l~--~~D~~ilVvda~-----~g~~~~---------~~~~~~~~~~~~~p~ 210 (571)
++|+||--..- ....+....+ .-|.+ ++++.. +|+... ...+...+.++++|.
T Consensus 293 ~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDlv-lll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g~~~ 371 (399)
T PRK08099 293 VAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDLT-ILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENNIEY 371 (399)
T ss_pred eEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCEE-EEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999876321 1122233332 24754 444433 222211 122335566789995
Q ss_pred EEEEecCCccccchhhhHHHHHHHhCC
Q 008294 211 ICFVNKMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 211 ivviNK~D~~~~~~~~~~~~i~~~l~~ 237 (571)
+++ ++-|. ..++.+.++.|.+.++.
T Consensus 372 v~l-~~g~~-~eR~~~a~~~i~~~l~~ 396 (399)
T PRK08099 372 VHV-ESPDY-DKRYLRCVELVDQMLGE 396 (399)
T ss_pred EEE-CCCCH-HHHHHHHHHHHHHHhhc
Confidence 544 44442 34456666666666543
|
|
| >cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=55.25 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=61.3
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC-ccccce
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD-TITGET 469 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdt 469 (571)
.+.|.....|++.|.++.+-|.+|+|+.||.+...... -||..++...| ..+.+|.||+.+.+.|+++ ...||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--GkVr~~~d~~g---~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY--GKIRTMVDENG---KALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc--ceEEEEECCCC---CCccccCCCCCEEEeeecCCccCCCE
Confidence 46788888999999999999999999999999876532 25666555544 6799999999999999987 456776
Q ss_pred ec
Q 008294 470 LC 471 (571)
Q Consensus 470 l~ 471 (571)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 64
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=74.08 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCccc---ccchh-hhhhhceeEeeceE--EE-----eecC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTAT---MDWME-QEQERGITITSAAT--TT-----YWNK 154 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~~---~d~~~-~e~~~g~t~~~~~~--~~-----~~~~ 154 (571)
...|++||+.|+||||++..|.... |. .+.+-+...+.- .+... --...|+.+....- .+ ...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4689999999999999999997321 21 111111110000 00000 00112222211100 00 1146
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCCchhHHHHHHHHHhc-C-CCeEEEEecCCcc
Q 008294 155 HRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVWRQADKY-G-VPRICFVNKMDRL 220 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~------~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~-~p~ivviNK~D~~ 220 (571)
+.+.||||||.-.........+. ..+-.++|+|++.+... ..++....... . -+-=+|++|+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~-l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT-LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH-HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 78999999994432222222222 23568999999753211 11222222221 1 1335789999964
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=69.84 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=63.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcc---cccchhh-hhhhceeEeeceEE-------Eeec
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA---TMDWMEQ-EQERGITITSAATT-------TYWN 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~---~~d~~~~-e~~~g~t~~~~~~~-------~~~~ 153 (571)
+...++++|+.|+||||++..|.... |. .+.+-+...+. ..+.... -...|+.+...... ....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 34689999999999999999997322 21 12222211110 0000000 12233322211111 1124
Q ss_pred CeEEEEEcCCCCCCcHHHHHHH---HHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVERA---LRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~---l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
++.+.+|||+|........... +... .-.++|+|+..+... ..+........+ ..-+|+||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCc
Confidence 6689999999954433222222 2211 226899999754311 122222222223 335778999954
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=63.61 Aligned_cols=64 Identities=8% Similarity=0.000 Sum_probs=44.9
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH------hcCCCeEEEEecCC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD------KYGVPRICFVNKMD 218 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~------~~~~p~ivviNK~D 218 (571)
+++.+.||||||+.. ..+..++..+|.+|+.+.+....-..+.+.+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999875 55677899999999888775322222333332222 34678889999987
|
|
| >PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=51.18 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=51.3
Q ss_pred CeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccc
Q 008294 389 PFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTIT 466 (571)
Q Consensus 389 p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~ 466 (571)
|....|.+.+.-...+ +..|+|..|+|++|..| .|. +++.+..++-+ .++|++|.+||-|+| .|..++..
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~--~iG~I~sIe~~-~k~v~~A~~G~eVai~Ieg~~~i~e 75 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR--KIGRIKSIEDN-GKNVDEAKKGDEVAISIEGPTQIKE 75 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS--CEEEEEEEEET-TEEESEEETT-EEEEEEET--TB-T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE--EEEEEEEeEEC-CcCccccCCCCEEEEEEeCCccCCC
Confidence 4455555555555657 77779999999999999 333 47888888744 499999999999998 45446777
Q ss_pred cceec
Q 008294 467 GETLC 471 (571)
Q Consensus 467 Gdtl~ 471 (571)
||+|.
T Consensus 76 GDiLy 80 (81)
T PF14578_consen 76 GDILY 80 (81)
T ss_dssp T-EEE
T ss_pred CCEEe
Confidence 88763
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00068 Score=69.90 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=61.2
Q ss_pred eeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----
Q 008294 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK---- 205 (571)
Q Consensus 141 ~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-----------~~~~~~~~~~~~~---- 205 (571)
.|.......+.+++..+.+||++|+......+...+..++++|+|||.++-- .......++.+..
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 3444555566778899999999999999999999999999999999998631 1122233333322
Q ss_pred cCCCeEEEEecCCcccc
Q 008294 206 YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~ 222 (571)
.++|+++++||.|+...
T Consensus 227 ~~~pill~~NK~D~f~~ 243 (317)
T cd00066 227 ANTSIILFLNKKDLFEE 243 (317)
T ss_pred cCCCEEEEccChHHHHH
Confidence 47899999999997653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=68.15 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=88.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec--------eEEEee---cCeEEE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA--------ATTTYW---NKHRIN 158 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~--------~~~~~~---~~~~i~ 158 (571)
-.-|++||++-+||||++.++....-. ..+.......+..|-.|+. ..|-|+.+. .+.+.. -..++-
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~Vl-PnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVL-PNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcC-CCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 356999999999999999999744321 1110000001111111111 112222111 111111 246788
Q ss_pred EEcCCCCC--------C-----------------cHHHHHHHHHhc------CeEEEEEeCCCC------CchhHHHHHH
Q 008294 159 IIDTPGHV--------D-----------------FTLEVERALRVL------DGAICLFDSVAG------VEPQSETVWR 201 (571)
Q Consensus 159 liDTPG~~--------~-----------------f~~~~~~~l~~~------D~~ilVvda~~g------~~~~~~~~~~ 201 (571)
||||-|+. + |...+.-+.+.. =|+++--|++-+ .....++...
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999852 1 333333333322 234444566522 2234567788
Q ss_pred HHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 202 QADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 202 ~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.++..++|+++++|-.+-...+-.++.+++.++++...+|+..
T Consensus 175 ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc 217 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC 217 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh
Confidence 9999999999999999876666778889999999887776654
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0038 Score=60.04 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=46.6
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~i-vviNK~D~~~~~~~~ 226 (571)
..+.+.||||||... .....++..+|.+|+++.+..---......++.+.. .+.|.+ ++.|+.+.......+
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~ 152 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYRE 152 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcchHHHH
Confidence 457899999999743 567889999999999998864322222233332222 245554 566776643332233
Q ss_pred hHHHH
Q 008294 227 TRDMI 231 (571)
Q Consensus 227 ~~~~i 231 (571)
+.+.+
T Consensus 153 ~~~~l 157 (211)
T PHA02518 153 ARKAL 157 (211)
T ss_pred HHHHH
Confidence 44444
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0027 Score=66.74 Aligned_cols=49 Identities=16% Similarity=0.020 Sum_probs=33.9
Q ss_pred HHHHHHHhcC-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLD-GAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+...+...| .+++|||+.+-.......+.+.. .+.|+++|+||+|+..
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 3566666666 89999999875544433332222 2789999999999864
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=68.01 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=61.8
Q ss_pred eeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----
Q 008294 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-----------EPQSETVWRQADK---- 205 (571)
Q Consensus 141 ~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-----------~~~~~~~~~~~~~---- 205 (571)
.|.......+.+++..+.+||..|+..+...+...+..++++|+|||.++-- .......++.+..
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 3444555667778899999999999999999999999999999999998521 1222333443332
Q ss_pred cCCCeEEEEecCCcccc
Q 008294 206 YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~ 222 (571)
.++|+++++||.|+...
T Consensus 250 ~~~piil~~NK~D~~~~ 266 (342)
T smart00275 250 ANTSIILFLNKIDLFEE 266 (342)
T ss_pred cCCcEEEEEecHHhHHH
Confidence 47899999999998643
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0043 Score=60.05 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=49.6
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhc----CCCe-EEEEecCCccccchh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKY----GVPR-ICFVNKMDRLGANFF 225 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~----~~p~-ivviNK~D~~~~~~~ 225 (571)
+.+.+.||||+|....... ... ++.+|.++++++...--......+++.++.. +.+. .+|+||.|.. ...
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~ 191 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET 191 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence 4689999999886531111 112 3479999999977532111223333333332 4444 3889999954 233
Q ss_pred hhHHHHHHHhCCcce
Q 008294 226 RTRDMIVTNLGAKPL 240 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~ 240 (571)
+.++++.+.++....
T Consensus 192 ~~~~~~~~~~~~~vl 206 (212)
T cd02117 192 ELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHcCCCEE
Confidence 456777777776443
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.003 Score=65.80 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=32.8
Q ss_pred HhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCCeEEEEecCCccc
Q 008294 177 RVLDGAICLFDSVAGVEPQSETVW-RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 177 ~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivviNK~D~~~ 221 (571)
..+|.+++|++..........+-| ..+...++|.++|+||+|+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 457999999987765554443333 445667899999999999864
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=66.29 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=37.1
Q ss_pred HHhcCeEEEEEeCCCCCch-hHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 176 LRVLDGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+|.+++|+++..++.. .....+..+...+++.++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 3567999999999766666 445666777889999999999999864
|
|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.011 Score=58.52 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i 231 (571)
+++.+.|||||+... ..+..++..+|.+|+|+++...-...+....+.+...+.+. .+++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 358899999998665 45677788999999999886433334444555566667775 4889999863221 123455
Q ss_pred HHHhCC
Q 008294 232 VTNLGA 237 (571)
Q Consensus 232 ~~~l~~ 237 (571)
.+.++.
T Consensus 183 ~~~~~~ 188 (251)
T TIGR01969 183 ETILEV 188 (251)
T ss_pred HHhhCC
Confidence 555554
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0043 Score=59.46 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|.++|+--+|||++-....+...... +-++ |....+|.....- .=..+.+||-||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne--------Tlfl-----ESTski~~d~is~----sfinf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE--------TLFL-----ESTSKITRDHISN----SFINFQVWDFPGQMDFFD 90 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc--------eeEe-----eccCcccHhhhhh----hhcceEEeecCCccccCC
Confidence 5699999999999999887653221100 1111 1111111111110 114578999999988633
Q ss_pred ---HHHHHHHhcCeEEEEEeCCCCCc-hhHHHHHHHHHhc----CCCeEEEEecCCccccc
Q 008294 171 ---EVERALRVLDGAICLFDSVAGVE-PQSETVWRQADKY----GVPRICFVNKMDRLGAN 223 (571)
Q Consensus 171 ---~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~p~ivviNK~D~~~~~ 223 (571)
....-++.+.+.|+|+|+.+... ..++-+.-..+.+ ++.+=+++-|.|-+..+
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 35667788899999999986544 3344444444544 34456889999977654
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00078 Score=71.15 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=45.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|++||.+|+||||+||+|. |...-..+- .+|.|-....+.+ .-.+.|-||||..-=.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv---G~KkVsVS~--------------TPGkTKHFQTi~l---s~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV---GRKKVSVSS--------------TPGKTKHFQTIFL---SPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh---cCceeeeec--------------CCCCcceeEEEEc---CCCceecCCCCccccC
Confidence 6899999999999999999997 433222221 2344554444443 3568899999975322
Q ss_pred HHHHHHHHhcCeE
Q 008294 170 LEVERALRVLDGA 182 (571)
Q Consensus 170 ~~~~~~l~~~D~~ 182 (571)
-...++...++|+
T Consensus 374 f~~~r~emvl~Gi 386 (562)
T KOG1424|consen 374 FSPTRAEMVLNGI 386 (562)
T ss_pred CCchHHHHHHhcC
Confidence 1222344444453
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0074 Score=51.53 Aligned_cols=59 Identities=10% Similarity=-0.016 Sum_probs=43.2
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC----CeEEEEec
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV----PRICFVNK 216 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~----p~ivviNK 216 (571)
.+.++|||+.... .....+..+|.+++|++....-.......++.+++.+. .+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997653 45678899999999998876545555666666666554 34577885
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0036 Score=61.15 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=79.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
-..||.-||.+|-|||||++.|............ ...++........+... ..+++++||.|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H--------------~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTH--------------TLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCcc--------------CCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 3579999999999999999999733221111000 01122222221111112 2468999999987
Q ss_pred Cc-------------H-HHH----------HHHHH-----hcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 167 DF-------------T-LEV----------ERALR-----VLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 167 ~f-------------~-~~~----------~~~l~-----~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
|- . .+. .+++. ..+++++.|..+ +++...+.-.++.+.. .+.+|-||-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHH
Confidence 61 1 111 11221 125677777665 6776666655555543 4677778999
Q ss_pred CCccccc-hhhhHHHHHHHhCCc-ceeeeccCC
Q 008294 217 MDRLGAN-FFRTRDMIVTNLGAK-PLVVQLPVG 247 (571)
Q Consensus 217 ~D~~~~~-~~~~~~~i~~~l~~~-~~~~~~pi~ 247 (571)
.|-...+ +.+....|...|-.+ .-..+.|..
T Consensus 186 aDtisK~eL~~FK~kimsEL~sngv~IYqfPtD 218 (406)
T KOG3859|consen 186 ADTISKEELKRFKIKIMSELVSNGVQIYQFPTD 218 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCceeeeccch
Confidence 9976533 444444444444333 334566654
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0051 Score=52.04 Aligned_cols=71 Identities=25% Similarity=0.233 Sum_probs=46.3
Q ss_pred EEEEc-CCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 93 IGIMA-HIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 93 I~ivG-~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
|++.| ..|+||||+.-.|...... .|. .....|.. ..+.+.++|||+... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~~~---~vl~~d~d-------------------~~~d~viiD~p~~~~--~~ 54 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---RGK---RVLLIDLD-------------------PQYDYIIIDTPPSLG--LL 54 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---CCC---cEEEEeCC-------------------CCCCEEEEeCcCCCC--HH
Confidence 56666 6799999999988633221 000 00011111 116799999999765 34
Q ss_pred HHHHHHhcCeEEEEEeCCC
Q 008294 172 VERALRVLDGAICLFDSVA 190 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~ 190 (571)
...++..+|.+++++++..
T Consensus 55 ~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 55 TRNALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHHHHCCEEEEeccCCH
Confidence 5588899999999998864
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0089 Score=60.09 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=47.8
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCCeE-EEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~----~~~~~p~i-vviNK~D~~~~~~~~~ 227 (571)
+++.+.||||||..... .+..++..+|.+|+++.+...-.......++.+ ...+++++ +|+|+.+. ...
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 46889999999865322 245568899999999977432112222222222 23456654 78999773 223
Q ss_pred HHHHHHHhCCcc
Q 008294 228 RDMIVTNLGAKP 239 (571)
Q Consensus 228 ~~~i~~~l~~~~ 239 (571)
++++.+.++...
T Consensus 190 ~~~~~~~~g~~v 201 (270)
T PRK13185 190 IDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHcCCCE
Confidence 455555565543
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0092 Score=57.28 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=50.7
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (571)
..+.+.|||||..... .+.......+|.+|+|+++...-........+.+...+.+++ +|+||.|...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 3678999999984332 233345567899999999976666667777788888888865 7899999643
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=58.45 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccccchhhhHHHH
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i 231 (571)
+.+.+||||+.. ......++..+|.+++++.+..--.......+ ..... ...+.-+|+|+.|.......++.+.+
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 479999999953 45677889999999999987521111111122 22221 23456789999996544345566677
Q ss_pred HHHhCCc
Q 008294 232 VTNLGAK 238 (571)
Q Consensus 232 ~~~l~~~ 238 (571)
++.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 7777654
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0021 Score=77.55 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=62.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCCCCCC-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTPGHVD- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTPG~~~- 167 (571)
.+=..|||++|+||||++..- |....... .......+|+. ....|. |-...-.+|||+|..-
T Consensus 111 LPWYlviG~~gsGKtt~l~~s----gl~~pl~~---------~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG~y~~ 174 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS----GLKFPLAE---------RLGAAALRGVG---GTRNCDWWFTDEAVLIDTAGRYTT 174 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC----CCCCcCch---------hhccccccCCC---CCcccceEecCCEEEEcCCCcccc
Confidence 466899999999999999876 21110000 00000001110 011222 2335677999999321
Q ss_pred -------cHHHHHHH---H------HhcCeEEEEEeCCCCCch--h--------HHHHHHHHH---hcCCCeEEEEecCC
Q 008294 168 -------FTLEVERA---L------RVLDGAICLFDSVAGVEP--Q--------SETVWRQAD---KYGVPRICFVNKMD 218 (571)
Q Consensus 168 -------f~~~~~~~---l------~~~D~~ilVvda~~g~~~--~--------~~~~~~~~~---~~~~p~ivviNK~D 218 (571)
...++... + +-.||+|++||+.+=... . .+..+..+. ...+|+.|+++|||
T Consensus 175 ~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~D 254 (1169)
T TIGR03348 175 QDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKAD 254 (1169)
T ss_pred CCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecch
Confidence 12222222 2 235999999999853321 1 111122222 34789999999999
Q ss_pred ccc
Q 008294 219 RLG 221 (571)
Q Consensus 219 ~~~ 221 (571)
+..
T Consensus 255 ll~ 257 (1169)
T TIGR03348 255 LLA 257 (1169)
T ss_pred hhc
Confidence 863
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=58.54 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=47.8
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCCeE-EEEecCCccccchhhhH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA----DKYGVPRI-CFVNKMDRLGANFFRTR 228 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~----~~~~~p~i-vviNK~D~~~~~~~~~~ 228 (571)
.+.+.||||||.... ..+..++..+|.+|+++.+...--......++.+ ...+++.+ +|+|++|.. ..+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-----DLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----HHH
Confidence 578999999986532 2344568999999999987533222223333222 23455544 688999841 233
Q ss_pred HHHHHHhCCcc
Q 008294 229 DMIVTNLGAKP 239 (571)
Q Consensus 229 ~~i~~~l~~~~ 239 (571)
+++.+.++...
T Consensus 189 ~~~~~~~~~~v 199 (267)
T cd02032 189 DKFVEAVGMPV 199 (267)
T ss_pred HHHHHhCCCCE
Confidence 44555555443
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0069 Score=62.02 Aligned_cols=124 Identities=21% Similarity=0.305 Sum_probs=65.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc---CCccee--e-eeecCcccccchhh-hhhhceeEeeceEEE------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKI--G-EVHEGTATMDWMEQ-EQERGITITSAATTT------------ 150 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~--g-~~~~g~~~~d~~~~-e~~~g~t~~~~~~~~------------ 150 (571)
.-.|.++|--|+||||.+-.|.++- |..... + .+..| ..|.... -.+.++.+..+....
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag--AfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG--AFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc--hHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3467899999999999999987432 221111 0 11111 1111111 122233332221111
Q ss_pred -eecCeEEEEEcCCCCCCcHH----HHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CCe-EEEEecCCcc
Q 008294 151 -YWNKHRINIIDTPGHVDFTL----EVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFVNKMDRL 220 (571)
Q Consensus 151 -~~~~~~i~liDTPG~~~f~~----~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~-ivviNK~D~~ 220 (571)
.-+++.+.|+||.|...-.. |+..... ..|-+|+|+||+-|.... .+++.++ +-+ -++++|+|-.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae-----~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE-----AQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH-----HHHHHHHHhhccceEEEEecccC
Confidence 11578999999999654322 2222222 239999999998764321 2222222 221 4789999953
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=59.79 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCeE-EEEecCCccccchhhhH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPRI-CFVNKMDRLGANFFRTR 228 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~i-vviNK~D~~~~~~~~~~ 228 (571)
++.+.||||||... ......++..||.+|+++++...--.....+++.++. .+++.. +|+|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~-~~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVV-CGGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCcce-echhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 57899999998632 2234456788999999998753221222233322222 234443 78899873 2345
Q ss_pred HHHHHHhCCcceeeecc
Q 008294 229 DMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 229 ~~i~~~l~~~~~~~~~p 245 (571)
+++.+.++..... .+|
T Consensus 189 ~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 189 DKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHcCCceEE-ECC
Confidence 5566667665443 444
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0097 Score=48.92 Aligned_cols=73 Identities=22% Similarity=0.152 Sum_probs=48.7
Q ss_pred EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH-
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE- 171 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~- 171 (571)
+++.|..|+||||++..|...... .|..+ ..+ + .+.++|+||..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------------------~g~~v----~~~--~--d~iivD~~~~~~~~~~~ 51 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------------------RGKRV----LLI--D--DYVLIDTPPGLGLLVLL 51 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------------------CCCeE----EEE--C--CEEEEeCCCCccchhhh
Confidence 678899999999999999733211 01111 011 1 7899999997763321
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchh
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQ 195 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~ 195 (571)
....+..+|.++++++....-...
T Consensus 52 ~~~~~~~~~~vi~v~~~~~~~~~~ 75 (99)
T cd01983 52 CLLALLAADLVIIVTTPEALAVLG 75 (99)
T ss_pred hhhhhhhCCEEEEecCCchhhHHH
Confidence 256778889999999887543333
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=58.61 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=47.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCCe-EEEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD----KYGVPR-ICFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~----~~~~p~-ivviNK~D~~~~~~~~~ 227 (571)
+.+.+.||||||..... .+..++..+|.+|+++...-.-.......++.+. ..+++. -+|+|+.|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 46899999999854311 1224578999999988664221122223333222 235554 3788999853 34
Q ss_pred HHHHHHHhCCcc
Q 008294 228 RDMIVTNLGAKP 239 (571)
Q Consensus 228 ~~~i~~~l~~~~ 239 (571)
++++.+.++...
T Consensus 188 ~~~~~~~~~~~v 199 (268)
T TIGR01281 188 IERFNERVGMPV 199 (268)
T ss_pred HHHHHHHcCCCE
Confidence 556666666543
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >KOG4181 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.043 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+.-.|+++|.-|+|||||++.|.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHh
Confidence 567789999999999999999885
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=59.62 Aligned_cols=85 Identities=9% Similarity=-0.038 Sum_probs=48.6
Q ss_pred ecCeEEEEEcCCCCCCcH-HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCCeE-EEEecCCccccchhh
Q 008294 152 WNKHRINIIDTPGHVDFT-LEVERALRVLDGAICLFDSVAGVEPQSETVWRQAD---KYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~-~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~---~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
++++.+.||||||..... -....++..+|.+++++....---......++.+. ..+.++. +|+|+.+.. ...+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 356899999999864211 11122345789999999764211111112333333 3355554 778976532 1255
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
+++++++.++..
T Consensus 192 ~~e~l~~~~~~~ 203 (273)
T PRK13232 192 LLEAFAKKLGSQ 203 (273)
T ss_pred HHHHHHHHhCCC
Confidence 678888888764
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0016 Score=66.81 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=43.9
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++...++|||-+|+||||+||+|.... ....|. ..|+|..+..+.+ +..|.|+|.||.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k--~C~vg~---------------~pGvT~smqeV~L---dk~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRK--ACNVGN---------------VPGVTRSMQEVKL---DKKIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhc--cccCCC---------------Cccchhhhhheec---cCCceeccCCce
Confidence 34567889999999999999999997332 222232 2466666655544 568999999996
Q ss_pred C
Q 008294 166 V 166 (571)
Q Consensus 166 ~ 166 (571)
.
T Consensus 308 v 308 (435)
T KOG2484|consen 308 V 308 (435)
T ss_pred e
Confidence 4
|
|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=57.61 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=45.1
Q ss_pred cCeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHH---H-HhcCCCeEEE-EecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQ---A-DKYGVPRICF-VNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~---~-~~~~~p~ivv-iNK~D~~~~~~~~ 226 (571)
+.+.+.||||||....... ...++..+|.+|+++.+..--.......++. + ...+.++..| .|+.. .....+
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~ 192 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDE 192 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHH
Confidence 3678999999986531111 1122346999999997753111111222222 2 2235666544 45422 222345
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
.++++++.++..
T Consensus 193 ~~~~l~~~~g~~ 204 (270)
T cd02040 193 LIDAFAKRLGTQ 204 (270)
T ss_pred HHHHHHHHcCCC
Confidence 677787777764
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.057 Score=54.61 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=55.5
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccch--hhhHHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANF--FRTRDM 230 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~--~~~~~~ 230 (571)
.+.+.|||||+... .....++..+|.+++|++....--......++.+...+.+ .-+|+|+++....+. ....++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 68899999998754 4566778889999999987643334444555666665543 567899998532111 113566
Q ss_pred HHHHhCCcc
Q 008294 231 IVTNLGAKP 239 (571)
Q Consensus 231 i~~~l~~~~ 239 (571)
+.+.++...
T Consensus 204 l~~~~~~~~ 212 (281)
T CHL00175 204 VQEMLGIPL 212 (281)
T ss_pred HHHHhCCCe
Confidence 777777643
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0013 Score=67.22 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.5
Q ss_pred cCCCCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 84 VIPLKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 84 ~~~~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....+....|++||.+|+|||+++|.|.
T Consensus 301 Lh~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 301 LHSDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred hccCccceeeeeecCCCCchHHHHHHHh
Confidence 3456677899999999999999999996
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0075 Score=71.06 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD-- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~-- 167 (571)
+=-.|||++|+||||++... |.... ....+...|..... ..+|+| -...-.+|||.|-.-
T Consensus 126 PWy~viG~pgsGKTtal~~s----gl~Fp------------l~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q 188 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS----GLQFP------------LAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQ 188 (1188)
T ss_pred CceEEecCCCCCcchHHhcc----cccCc------------chhhhccccccCCC-CcccCcccccceEEEcCCcceecc
Confidence 44679999999999998754 21110 00111111111111 223333 345678999999321
Q ss_pred ----c--HHHHH---------HHHHhcCeEEEEEeCCCCCch--hHH-HHH-------HHHH---hcCCCeEEEEecCCc
Q 008294 168 ----F--TLEVE---------RALRVLDGAICLFDSVAGVEP--QSE-TVW-------RQAD---KYGVPRICFVNKMDR 219 (571)
Q Consensus 168 ----f--~~~~~---------~~l~~~D~~ilVvda~~g~~~--~~~-~~~-------~~~~---~~~~p~ivviNK~D~ 219 (571)
. ..++. +..+-.||+|+.+|..+-.+. +.+ .+. ..++ ....|+.+++||+|+
T Consensus 189 ~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 189 DSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred cCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 1 11222 223446999999998753322 222 112 1222 247899999999998
Q ss_pred cc
Q 008294 220 LG 221 (571)
Q Consensus 220 ~~ 221 (571)
..
T Consensus 269 l~ 270 (1188)
T COG3523 269 LP 270 (1188)
T ss_pred cc
Confidence 64
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.07 Score=53.57 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...+|.++|..++|||||+..|-
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klq 73 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQ 73 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhh
Confidence 45799999999999999999994
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0061 Score=56.99 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=29.9
Q ss_pred HhcCeEEEEEe---CCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 177 RVLDGAICLFD---SVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 177 ~~~D~~ilVvd---a~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
..+|. +++| ..+....+..+.+..+.+.+.|+++++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34455 7899 566666777788888888899999999984
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0044 Score=57.92 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=34.7
Q ss_pred CeEEEEEeCCCCCchhHHHHHHH--HHhcCCCeEEEEecCCccc
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQ--ADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~--~~~~~~p~ivviNK~D~~~ 221 (571)
|++++|+|+..........+.+. +...+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877776666666 4456799999999999964
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.021 Score=57.94 Aligned_cols=143 Identities=22% Similarity=0.233 Sum_probs=73.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc----ccchhh-hhhhceeEeeceEE-----Ee------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT----MDWMEQ-EQERGITITSAATT-----TY------ 151 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~----~d~~~~-e~~~g~t~~~~~~~-----~~------ 151 (571)
++...|.++|-.|+||||-+..|.+..-......-+..+.|+ .+.... -.+-|+.+-..... +-
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 346788999999999999999997442211111111111111 111111 12234433332100 00
Q ss_pred --ecCeEEEEEcCCCCCC----cHHHHHHHHHhc---Ce-----EEEEEeCCCCCchhHHHHHHHHHhcC--CCe-EEEE
Q 008294 152 --WNKHRINIIDTPGHVD----FTLEVERALRVL---DG-----AICLFDSVAGVEPQSETVWRQADKYG--VPR-ICFV 214 (571)
Q Consensus 152 --~~~~~i~liDTPG~~~----f~~~~~~~l~~~---D~-----~ilVvda~~g~~~~~~~~~~~~~~~~--~p~-ivvi 214 (571)
-+++.+.||||+|--. ...++..-.+.+ +. +++|+||.-|-.. +.+++.++ +++ =+++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~GiIl 291 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCceEEE
Confidence 1578999999999543 344444333333 33 7788899877543 22222221 222 4789
Q ss_pred ecCCccccchhhhHHHHHHHhCC
Q 008294 215 NKMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 215 NK~D~~~~~~~~~~~~i~~~l~~ 237 (571)
+|+|- ...--++-.|...++.
T Consensus 292 TKlDg--tAKGG~il~I~~~l~~ 312 (340)
T COG0552 292 TKLDG--TAKGGIILSIAYELGI 312 (340)
T ss_pred Eeccc--CCCcceeeeHHHHhCC
Confidence 99993 2223334445555554
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.077 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+|+|.|++|+|||||+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 46899999999999999999873
|
|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0081 Score=56.81 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC---eEEEEecCCccccc-hhhhHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP---RICFVNKMDRLGAN-FFRTRD 229 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p---~ivviNK~D~~~~~-~~~~~~ 229 (571)
.+.+.|||||+..... +...+..+|.+|+++++..---..+......+...+.+ ..+|+||.+.-..+ ..+...
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~~~~ 171 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQEEIE 171 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHHHHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHHHHH
Confidence 3899999999976643 77888999999999998643233444555666666633 36789999865333 333444
Q ss_pred HHHHHh
Q 008294 230 MIVTNL 235 (571)
Q Consensus 230 ~i~~~l 235 (571)
.+...+
T Consensus 172 ~~~~~~ 177 (195)
T PF01656_consen 172 EIEREL 177 (195)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 444433
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.032 Score=56.28 Aligned_cols=83 Identities=11% Similarity=-0.060 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHH---HHH-HhcCCCeE-EEEecCCccccchhhh
Q 008294 154 KHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVW---RQA-DKYGVPRI-CFVNKMDRLGANFFRT 227 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~---~~~-~~~~~p~i-vviNK~D~~~~~~~~~ 227 (571)
.+.+.||||||....... ...++..+|.+|+++.+..---.....++ ..+ ...++++. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 578999999986421111 11234478999999977532222222222 222 22355554 4456422 2233455
Q ss_pred HHHHHHHhCCc
Q 008294 228 RDMIVTNLGAK 238 (571)
Q Consensus 228 ~~~i~~~l~~~ 238 (571)
.+++++.++..
T Consensus 193 ~e~l~~~~~~~ 203 (275)
T TIGR01287 193 IDEFAKKLGTQ 203 (275)
T ss_pred HHHHHHHhCCc
Confidence 67777777764
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. |
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.044 Score=55.37 Aligned_cols=87 Identities=8% Similarity=-0.077 Sum_probs=46.3
Q ss_pred cCeEEEEEcCCCCCCcHH-HHHHHHHhcCeEEEEEeCCCCCchhHH---HHHHHHHh-cCCCeEEEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQSE---TVWRQADK-YGVPRICFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~~---~~~~~~~~-~~~p~ivviNK~D~~~~~~~~~ 227 (571)
..+.+.||||||...... .+..++..+|.+|+++.+...--.... +.+..+.. .+..+..+++.... .....+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRS-VIDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccC-CCchhHH
Confidence 368899999998532111 122345668999999987532111222 22333322 35555444443221 1112356
Q ss_pred HHHHHHHhCCcce
Q 008294 228 RDMIVTNLGAKPL 240 (571)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (571)
++++.+.++....
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 7788888876544
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0075 Score=63.20 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..++++|.+|+|||||+|+|+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999999973
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=51.25 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll 111 (571)
+|+++|..|+|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 68999999999999999995
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.039 Score=59.51 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
...++...-++|.-++|||.|+++++...-.....++ ......++..... .....+.|-|.+-.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~--------------~~~~~avn~v~~~--g~~k~LiL~ei~~~ 484 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGT--------------TKPRYAVNSVEVK--GQQKYLILREIGED 484 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccC--------------CCCceeeeeeeec--cccceEEEeecCcc
Confidence 3445778899999999999999999821110000000 0011122222111 22334445554432
Q ss_pred -CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HHhcCCCeEEEEecCCccccc--hhhhHHHHHHHhCCc
Q 008294 166 -VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-ADKYGVPRICFVNKMDRLGAN--FFRTRDMIVTNLGAK 238 (571)
Q Consensus 166 -~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~~~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~ 238 (571)
.++..+-. ..+|.+++++|.+......-.. .... -....+|.++|..|+|+.... ..-..++.+..++..
T Consensus 485 ~~~~l~~ke---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~ 559 (625)
T KOG1707|consen 485 DQDFLTSKE---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP 559 (625)
T ss_pred ccccccCcc---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCC
Confidence 12222222 6789999999998543332221 1111 123689999999999997654 222236777777764
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.036 Score=53.69 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=67.0
Q ss_pred cCCCCchHHHHHHHHH---hcCCcceeeeeecCcccccchhhhhhhc-----eeEeece-E-EE-------eecCeEEEE
Q 008294 97 AHIDAGKTTTTERVLF---YTGRNYKIGEVHEGTATMDWMEQEQERG-----ITITSAA-T-TT-------YWNKHRINI 159 (571)
Q Consensus 97 G~~~~GKSTLi~~Ll~---~~g~~~~~g~~~~g~~~~d~~~~e~~~g-----~t~~~~~-~-~~-------~~~~~~i~l 159 (571)
.-.|+||||++-.|.. ..|.....-.-++......|.+...+.| +.+.... . .+ ...++.+.|
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEE
Confidence 4578999999988852 2343333333344444444443333333 1111100 0 00 013468999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCch---hHHHHHHHH---HhcCCCeEEEEecCCc
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP---QSETVWRQA---DKYGVPRICFVNKMDR 219 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~---~~~~~~~~~---~~~~~p~ivviNK~D~ 219 (571)
+||+|.... ....++..+|.+|+-+-.+...-. .+...+..+ ....+|.-|+.|++.-
T Consensus 89 vDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 89 VDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred EeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 999998763 355677789998876654432222 233333222 2457899999999973
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.029 Score=41.74 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=25.3
Q ss_pred HHHHHH-hcCeEEEEEeCCCC--CchhHH-HHHHHHHh-c-CCCeEEEEecCC
Q 008294 172 VERALR-VLDGAICLFDSVAG--VEPQSE-TVWRQADK-Y-GVPRICFVNKMD 218 (571)
Q Consensus 172 ~~~~l~-~~D~~ilVvda~~g--~~~~~~-~~~~~~~~-~-~~p~ivviNK~D 218 (571)
...+++ ..+.+++++|.++. ...... .+++.++. + ++|+++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 444554 34889999999853 332222 23344443 3 899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.037 Score=61.71 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=63.3
Q ss_pred EEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccce
Q 008294 392 GLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGET 469 (571)
Q Consensus 392 ~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gdt 469 (571)
+.|-++|..+..|.++-++|..|++++|..+++.+.+.....++|..+. +...+|+++..|+=|+| .+..++..||.
T Consensus 495 a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~ 573 (587)
T TIGR00487 495 AEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLK-RFKDDVKEVSNGYECGIGIKNYNDIKEGDI 573 (587)
T ss_pred EEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhh-ccCccccEECCCCEEEEEEeccccCCCCCE
Confidence 4555666666779999999999999999999988877655556666665 44588999999999998 55667889998
Q ss_pred ec
Q 008294 470 LC 471 (571)
Q Consensus 470 l~ 471 (571)
|-
T Consensus 574 i~ 575 (587)
T TIGR00487 574 IE 575 (587)
T ss_pred EE
Confidence 84
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.054 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.++|+|..|+|||||+++|+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 456899999999999999999973
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.053 Score=62.26 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
.+.|-++|..+..|.++-|+|..|+++.|..+++.+.+.....++|-.+. +...+|+++..|.=|+| .+..++..||
T Consensus 696 ~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~d~~~gD 774 (787)
T PRK05306 696 QAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLK-RFKDDVKEVRAGYECGIGLENYNDIKEGD 774 (787)
T ss_pred eEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhc-ccCcCccEeCCCCEEEEEeeccccCCCCC
Confidence 35566777777889999999999999999999999887655555666665 44588999999999998 5677899999
Q ss_pred eec
Q 008294 469 TLC 471 (571)
Q Consensus 469 tl~ 471 (571)
+|-
T Consensus 775 ~ie 777 (787)
T PRK05306 775 IIE 777 (787)
T ss_pred EEE
Confidence 884
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.062 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.|+|+|..|+|||||+++|+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999973
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.012 Score=59.55 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+.|+|+|+.|+||||++..|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
|
|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=50.73 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCCCcHHH-HHHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcc
Q 008294 155 HRINIIDTPGHVDFTLE-VERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~-~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~ 220 (571)
+.+.++|||........ +...+.. +|.+++|+.+...-.......++.++..+.+. -+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 89999999975443322 2333333 37899999988766777888899999988875 5789998754
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.3 Score=48.87 Aligned_cols=85 Identities=12% Similarity=-0.073 Sum_probs=47.2
Q ss_pred cCeEEEEEcCCCCCCcHHHH-HHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEV-ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~-~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~ 230 (571)
+.+.+.||||||........ ..++..+|.+|+++.+..---......++.+...+.+.. ++.|..+.. ...+.+++
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~--~~~~~~~~ 189 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGID--NEVEIVSE 189 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCc--cHHHHHHH
Confidence 46789999999865321110 111258899999987753222223333444444444433 455655532 23456777
Q ss_pred HHHHhCCcc
Q 008294 231 IVTNLGAKP 239 (571)
Q Consensus 231 i~~~l~~~~ 239 (571)
+.+.++...
T Consensus 190 l~~~~~~~v 198 (264)
T PRK13231 190 FASRIGSRI 198 (264)
T ss_pred HHHHhCCCe
Confidence 777777543
|
|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.12 Score=51.42 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=55.7
Q ss_pred cCeEEEEEcCCCCCCcHH-----HH----HHHHHh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTL-----EV----ERALRV--LDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~-----~~----~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~ 220 (571)
..+.+.++|||.-..... +. ...+.. .+.+++|+....-....+.+.+..+...++++ -+|+|++...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 468999999998533211 11 111221 25788888877655567778889999999987 5789998753
Q ss_pred cc-----------chhhhHHHHHHHhCC
Q 008294 221 GA-----------NFFRTRDMIVTNLGA 237 (571)
Q Consensus 221 ~~-----------~~~~~~~~i~~~l~~ 237 (571)
.. .+.+.++++++.|+.
T Consensus 203 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~ 230 (254)
T cd00550 203 DVTNCPFLEARREIQQKYLEEIEELFSD 230 (254)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22 134557777777654
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.094 Score=56.70 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.++|.|+|..++|||||+.+|.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~ 46 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQ 46 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhh
Confidence 4799999999999999999984
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.042 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.|+|+|..|+|||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999743
|
|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.049 Score=54.88 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=46.1
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHH------hcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCCeE-EEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALR------VLDGAICLFDSVAGVEPQSETVW----RQADKYGVPRI-CFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~------~~D~~ilVvda~~g~~~~~~~~~----~~~~~~~~p~i-vviNK~D~~~ 221 (571)
+.+.+.||||+|.. +..++. .||.+|+++.+..---.....++ +.....+++++ +|+|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--
Confidence 46889999998743 222333 78999999977521111111222 22234466655 78897431
Q ss_pred cchhhhHHHHHHHhCCcc
Q 008294 222 ANFFRTRDMIVTNLGAKP 239 (571)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~ 239 (571)
....++++++.+.++...
T Consensus 190 ~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 190 DGELELLEEFTDAIGTQM 207 (275)
T ss_pred CcHHHHHHHHHHHcCCce
Confidence 122456788888877643
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.057 Score=61.45 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=62.9
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
.|.|-++|..+. |.++-|+|.+|+++.|..+++.+.+.....+.|..+. +...+|+++..|.-|+| .+..++..||
T Consensus 651 ~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk-~~k~~v~ev~~g~ecgi~i~~~~d~~~gD 728 (742)
T CHL00189 651 EAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLK-RVKEDVEEAQEGNECGIFIEEFQLWQSGD 728 (742)
T ss_pred eEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHh-hcCccccEeCCCCEEEEEeeCCCCCCcCC
Confidence 344556665566 8999999999999999999998887665556666665 44588999999999999 5677799999
Q ss_pred eec
Q 008294 469 TLC 471 (571)
Q Consensus 469 tl~ 471 (571)
+|-
T Consensus 729 ~ie 731 (742)
T CHL00189 729 KIH 731 (742)
T ss_pred EEE
Confidence 883
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.35 Score=47.59 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.+.|++|+|||+|+.++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.014 Score=44.37 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+|+.|+|||||++++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999963
|
|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.17 Score=50.97 Aligned_cols=84 Identities=10% Similarity=-0.098 Sum_probs=45.5
Q ss_pred cCeEEEEEcCCCCCCcHH-HHHHHHHhcCeEEEEEeCCCCCchhH---HHHHHHHHh-cCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTL-EVERALRVLDGAICLFDSVAGVEPQS---ETVWRQADK-YGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~---~~~~~~~~~-~~~p~i-vviNK~D~~~~~~~~ 226 (571)
+.+.+.||||||...... ....++..+|.+|+++.+..---... .+.+...+. .++.+. +++|+... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 458999999988542111 11223447899999997643111112 222233322 344443 67787531 12345
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
.++++++.++..
T Consensus 194 ~~~~l~~~~~~~ 205 (274)
T PRK13235 194 MIEELARKIGTQ 205 (274)
T ss_pred HHHHHHHHcCCc
Confidence 677777777753
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.091 Score=52.92 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=32.3
Q ss_pred cCeEEEEEeCCCCCch--hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 179 LDGAICLFDSVAGVEP--QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 179 ~D~~ilVvda~~g~~~--~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.|-+++|+.+.++.-. ...+.+-.+...++..++++||+|+...
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~ 125 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD 125 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc
Confidence 5778888887764322 3335566677889999999999999764
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.03 Score=52.58 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=53.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---c
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD---F 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~---f 168 (571)
+|.|+|++||||||+...|....+. ..++.| |+.......+..... ..-.++|-.+... .
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i----~hlstg----d~~r~~~~~~t~lg~---------~~k~~i~~g~lv~d~i~ 64 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL----PHLDTG----DILRAAIAERTELGE---------EIKKYIDKGELVPDEIV 64 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC----cEEcHh----HHhHhhhccCChHHH---------HHHHHHHcCCccchHHH
Confidence 6899999999999999999855332 111111 111111111100000 0001344444221 1
Q ss_pred HHHHHHHHHhcCeE-EEEEeCCCCCchhHHHHHHHHHhcCCCeEEEE
Q 008294 169 TLEVERALRVLDGA-ICLFDSVAGVEPQSETVWRQADKYGVPRICFV 214 (571)
Q Consensus 169 ~~~~~~~l~~~D~~-ilVvda~~g~~~~~~~~~~~~~~~~~p~ivvi 214 (571)
...+...+..+|+. .+++|.--....|.+.+-+.+..++.+.-.++
T Consensus 65 ~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~ 111 (178)
T COG0563 65 NGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111 (178)
T ss_pred HHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEE
Confidence 23445556666633 46677655556666666666666665544443
|
|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.17 Score=48.65 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEe
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVN 215 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviN 215 (571)
.+.|||||..... ......+..+|.+|+|+.+..--.....+.+..++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6899999876652 23444456789999999887655555666666666 44554 3444
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.++.++|++|+||||++..++...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 5789999999999999999985443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.61 Score=41.51 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCCC-------cHHHHHHHHHhcCe-EEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchh
Q 008294 155 HRINIIDTPGHVD-------FTLEVERALRVLDG-AICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFF 225 (571)
Q Consensus 155 ~~i~liDTPG~~~-------f~~~~~~~l~~~D~-~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~ 225 (571)
+.+.+|+.+|... ...++.+.+ +. +++|.+...+.-.+.....+.++..++++. ++.|..+.......
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~---~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~ 115 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKEL---NLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLAT 115 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHh---CCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhh
Confidence 6889999997422 233333333 33 677777777655556667778888888875 66798875432222
Q ss_pred hhHHHHHHHhCC
Q 008294 226 RTRDMIVTNLGA 237 (571)
Q Consensus 226 ~~~~~i~~~l~~ 237 (571)
..++.+.+.++.
T Consensus 116 ~~~~~i~~~~gi 127 (134)
T cd03109 116 LNVETIERLTGI 127 (134)
T ss_pred hhHHHHHHhcCC
Confidence 346666776665
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.02 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|.|.+|+||||+++.|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 488999999999999999985544
|
... |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.37 Score=46.75 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....+.+.|.+|+|||+|+.++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.14 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+.++|+|..|+|||||+++|+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHH
Confidence 3578999999999999999997
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 571 | ||||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-174 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-174 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 1e-170 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 1e-157 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 1e-157 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 1e-157 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 1e-157 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 1e-156 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-156 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-156 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 1e-154 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-154 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 1e-153 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-153 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-152 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 1e-138 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 1e-52 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 5e-38 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 6e-34 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 2e-33 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 4e-32 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 4e-32 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 8e-27 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 8e-27 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 1e-22 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 8e-06 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 2e-22 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 3e-06 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 3e-17 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 3e-17 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 3e-12 | ||
| 1eft_A | 405 | The Crystal Structure Of Elongation Factor Ef-Tu Fr | 2e-11 | ||
| 1exm_A | 405 | Crystal Structure Of Thermus Thermophilus Elongatio | 2e-11 | ||
| 2c77_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 4e-11 | ||
| 1aip_A | 405 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 5e-11 | ||
| 2y0u_Z | 405 | The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou | 1e-10 | ||
| 1ttt_A | 405 | Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com | 2e-10 | ||
| 2c78_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 2e-10 | ||
| 2y0y_Z | 405 | The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo | 2e-10 | ||
| 2wrn_Z | 406 | The Crystal Structure Of The 70s Ribosome Bound To | 2e-10 | ||
| 4abr_Z | 405 | Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir | 2e-10 | ||
| 3u6b_A | 394 | Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 | 1e-09 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 2e-09 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 2e-09 | ||
| 1dg1_G | 394 | Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len | 3e-09 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 5e-09 | ||
| 1efc_A | 393 | Intact Elongation Factor From E.Coli Length = 393 | 5e-09 | ||
| 1ob2_A | 393 | E. Coli Elongation Factor Ef-Tu Complexed With The | 5e-09 | ||
| 1efu_A | 385 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 5e-09 | ||
| 1d8t_A | 393 | Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M | 5e-09 | ||
| 1f60_A | 458 | Crystal Structure Of The Yeast Elongation Factor Co | 1e-08 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 4e-08 | ||
| 1d2e_A | 397 | Crystal Structure Of Mitochondrial Ef-Tu In Complex | 2e-07 | ||
| 1mj1_A | 405 | Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB | 4e-07 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 5e-07 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 6e-07 | ||
| 1efm_A | 379 | Structure Of The Gdp Domain Of Ef-Tu And Location O | 1e-06 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 2e-06 | ||
| 3izq_1 | 611 | Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To | 3e-06 | ||
| 3p26_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap | 3e-06 | ||
| 3mca_A | 592 | Structure Of The Dom34-Hbs1 Complex And Implication | 1e-05 | ||
| 3p27_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd | 7e-05 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 1e-04 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 3e-04 | ||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 7e-04 | ||
| 3j2k_7 | 439 | Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ | 7e-04 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 7e-04 |
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 | Back alignment and structure |
|
| >pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 | Back alignment and structure |
|
| >pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 | Back alignment and structure |
|
| >pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 | Back alignment and structure |
|
| >pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405 | Back alignment and structure |
|
| >pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405 | Back alignment and structure |
|
| >pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406 | Back alignment and structure |
|
| >pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 | Back alignment and structure |
|
| >pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 | Back alignment and structure |
|
| >pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 | Back alignment and structure |
|
| >pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 | Back alignment and structure |
|
| >pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
| >pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 | Back alignment and structure |
|
| >pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 | Back alignment and structure |
|
| >pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 | Back alignment and structure |
|
| >pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 1004 bits (2598), Expect = 0.0
Identities = 276/476 (57%), Positives = 350/476 (73%), Gaps = 6/476 (1%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
MA R L+ RNIGIMAHIDAGKTTTTER+L+YTGR +KIGE HEG + MDWMEQ
Sbjct: 1 MA-----REFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQ 55
Query: 136 EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
EQ+RGITITSAATT W HR+NIIDTPGHVDFT+EVER+LRVLDGA+ + D+ +GVEPQ
Sbjct: 56 EQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQ 115
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
+ETVWRQA YGVPRI FVNKMD+LGANF + + L A +QLP+GAED F+ +
Sbjct: 116 TETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAI 175
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
+DLV+MK ++ +LG + +IP + A+E R+ +IE + E DE ME YL E
Sbjct: 176 IDLVEMKCFKYT-NDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEE 234
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
+K+ IR+ T F PVLCG+AFKNKGVQ +LDAV+DYLPSPLD+ + G N
Sbjct: 235 ISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASN 294
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
PE + A D FA LAFK+M+DP+VG LTF RVY+GT+++GSYV N+ KGK+ER+GR
Sbjct: 295 PEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGR 354
Query: 436 LLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEP 495
LL+MHANSR+++ +GDI A GLKDT TG+TLC + I+LE M+FP+PVI +++EP
Sbjct: 355 LLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEP 414
Query: 496 KTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
K+KAD DKM L+KL +EDP+FH DEE Q +I GMGELHL+I+VDR+K+EF
Sbjct: 415 KSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFN 470
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 1003 bits (2596), Expect = 0.0
Identities = 298/483 (61%), Positives = 368/483 (76%), Gaps = 12/483 (2%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
MA R P+ YRNIGI AHIDAGKTTTTER+LFYTG N+KIGEVH+G ATMDWMEQ
Sbjct: 1 MA-----RTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQ 55
Query: 136 EQERGITITSAATTTYWN-------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDS 188
EQERGITITSAATT +W+ HRINIIDTPGHVDFT+EVER++RVLDGA+ ++ +
Sbjct: 56 EQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCA 115
Query: 189 VAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 248
V GV+PQSETVWRQA+KY VPRI FVNKMDR+GANF + + I T LGA P+ +QL +GA
Sbjct: 116 VGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGA 175
Query: 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308
E++F GVVDLVKMKAI W+ + G F YEDIPA++ ++A E+ +IE+ E +E ME
Sbjct: 176 EEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELME 235
Query: 309 SYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAM 368
YL G E E IK +R+ + + V CGSAFKNKGVQ +LDAV+DYLPSP+D+PA+
Sbjct: 236 KYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAI 295
Query: 369 KGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG 428
G + + ER ASDDEPF+ LAFKI +DPFVG+LTF RVY+G +++G VLN+ K
Sbjct: 296 NGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKA 355
Query: 429 KKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 488
+ER GR+++MHAN RE++K AGDI A GLKD TG+TLCD D PI+LERM+FP+PV
Sbjct: 356 ARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPV 415
Query: 489 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKR 548
I +A+EPKTKAD +KM L +LA+EDPSF DEE NQT+I GMGELHL+IIVDR+KR
Sbjct: 416 ISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKR 475
Query: 549 EFK 551
EF
Sbjct: 476 EFN 478
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 994 bits (2572), Expect = 0.0
Identities = 288/477 (60%), Positives = 351/477 (73%), Gaps = 7/477 (1%)
Query: 76 MAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQ 135
MA K LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQ
Sbjct: 1 MA---VKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQ 57
Query: 136 EQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
E+ERGITIT+A TT +W HRINIIDTPGHVDFT+EVER++RVLDGAI +FDS GVEPQ
Sbjct: 58 ERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQ 117
Query: 196 SETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGV 255
SETVWRQA+KY VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G+
Sbjct: 118 SETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGI 177
Query: 256 VDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNE 315
+D+++MKA + G +LG IP A+EY +++E + D+ M YLEG E
Sbjct: 178 IDVLRMKAYTY-GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 316 PDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPEN 375
P EE + IRKGTI PV GSA KNKGVQ LLDAVVDYLPSPLD+P +KGT PE
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 376 PEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGR 435
E + P A LAFKIM+DP+VG LTF+RVY+GTL++GSYV N KG+KER+ R
Sbjct: 297 EVV--EIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVAR 354
Query: 436 LLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMDFPDPVIKVAIE 494
LL MHAN RE+V+ AGD+ A+ GLK+TITG+TL D P ++LE ++ P+PVI VAIE
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIE 414
Query: 495 PKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
PKTKAD +K++ L +LA+EDP+F S E QT+I GMGELHLEIIVDRLKREFK
Sbjct: 415 PKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFK 471
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 882 bits (2282), Expect = 0.0
Identities = 131/471 (27%), Positives = 223/471 (47%), Gaps = 30/471 (6%)
Query: 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT 142
R + ++ H +GKTT TE +L+ TG + G V EGT T D+ + + T
Sbjct: 2 GTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTT 61
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
+ + + HR+ ++D PG+ DF E+ AL D A+ + AGV+ +E W
Sbjct: 62 VRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTV 121
Query: 203 ADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMK 262
A++ G+PR+ V K+D+ G +++ + + + LG L + LP+ + G++D+ K
Sbjct: 122 AERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLGP-ILPIDLPLYEGGKWVGLIDVFHGK 179
Query: 263 AIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322
A + + ++P ++ Q +R +++E IVE D+ +E YLEG E E ++
Sbjct: 180 AYRYE----NGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALE 235
Query: 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLER 382
K + G PV S + GV PLL+ +++ LPSP +
Sbjct: 236 KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTE------------------ 277
Query: 383 AASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHAN 442
D P FK+ DPF+G + ++R+Y G L G + ++ + R+ L
Sbjct: 278 -RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQ--SEAGQVRLPHLYVPMGK 334
Query: 443 SREDVKVALAGDIIALAGLKDTITGETLCDADHPILLER--MDFPDPVIKVAIEPKTKAD 500
+V+ A AG ++ + + G L + P E PDP + VA+ PK + D
Sbjct: 335 DLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTD 394
Query: 501 IDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFK 551
++ L KL +EDPS R EE + ++ G GELHL +RL+ ++
Sbjct: 395 EARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYG 444
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-130
Identities = 127/539 (23%), Positives = 214/539 (39%), Gaps = 76/539 (14%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
+ RN+ ++AH+D GK+T T+ ++ G D + EQERGITI S A
Sbjct: 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA--RFTDTRKDEQERGITIKSTA 74
Query: 148 TTTYW----------------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 191
+ Y N IN+ID+PGHVDF+ EV ALRV DGA+ + D++ G
Sbjct: 75 ISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG 134
Query: 192 VEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA-ED 250
V Q+ETV RQA + + +NK+DR +++ + V + V D
Sbjct: 135 VCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYAD 194
Query: 251 NFKGVVDLVKMKAIIWSGEEL--------------------------------------G 272
G V + + + G L
Sbjct: 195 EVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKT 254
Query: 273 AKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAG 332
K+ +D A + + + + +++ I L M + E ++ +++
Sbjct: 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDL 314
Query: 333 SFVPVLCGSAFKNKGV-QPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASD 386
+L K LL+ +V +LPSP+ A + ++ +
Sbjct: 315 EGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDP 374
Query: 387 DEPFAGLAFKIMSDPFVGS-LTFVRVYAGTLSAGS--YVLNAN-------KGKKERIGRL 436
K++ G F RV+AGT+ +G + N + I R+
Sbjct: 375 KADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRV 434
Query: 437 LEMHANSREDVKVALAGDIIALAGLKDTITGE-TLCDADHPILLERMDFP-DPVIKVAIE 494
+ M E + AG+II L G+ + TL ++ ++ M F PV++VA+E
Sbjct: 435 VLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVE 494
Query: 495 PKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKL 553
K D+ K+ GL +L++ DP E + ++ G GELHLEI + L+ + +
Sbjct: 495 VKNANDLPKLVEGLKRLSKSDPCVLT-YMSESGEHIVAGTGELHLEICLQDLEHDHAGV 552
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 1e-66
Identities = 125/498 (25%), Positives = 202/498 (40%), Gaps = 66/498 (13%)
Query: 75 AMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGTATM 130
++ + + R R I++H DAGKTT TE++L + G G + AT
Sbjct: 5 SVEKQTAMR-------RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS 57
Query: 131 DWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA 190
DWME E++RGI++T++ + + IN++DTPGH DFT + R L +D A+ + D+
Sbjct: 58 DWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK 117
Query: 191 GVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAED 250
GVEP++ + P + F+NKMDR D I + L V P+G
Sbjct: 118 GVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGK 177
Query: 251 NFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310
FKG+ L++ ++ + E I + + + + +
Sbjct: 178 YFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGAS 237
Query: 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKG 370
+ + E + G P+ GSA N GV LLDA V P P
Sbjct: 238 ---HPFEREGY--------LKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR 286
Query: 371 T-DPENPEATLERAASDDEPFAGLAFKI---MSDPFVGSLTFVRVYAGTLSAGSYVLNAN 426
PE F+G FKI M + F+R+ +G G +
Sbjct: 287 LVKPEEE------------KFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVR 334
Query: 427 KGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT---GETLCDADH-------- 475
K+ +I L A RE+ + A GDII GL + T G+T +
Sbjct: 335 LKKEIQINNALTFMAGKRENAEEAWPGDII---GLHNHGTIQIGDTFTQGERFKFTGIPN 391
Query: 476 --PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG 533
L + DP+ K K + GL +L++E + F R + N+ ++
Sbjct: 392 FASELFRLVRLKDPL-------KQK----ALLKGLTQLSEEGATQLF-RPLDSNELILGA 439
Query: 534 MGELHLEIIVDRLKREFK 551
+G L +++ RL+ E+
Sbjct: 440 VGLLQFDVVAYRLENEYN 457
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 7e-65
Identities = 123/501 (24%), Positives = 203/501 (40%), Gaps = 65/501 (12%)
Query: 72 SVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH----EGT 127
++ E +KR R I++H DAGKTT TE+VL + G V
Sbjct: 2 TLSPYLQEVAKR-------RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQH 54
Query: 128 ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFD 187
A DWME E++RGI+IT++ ++ +N++DTPGH DF+ + R L +D + + D
Sbjct: 55 AKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVID 114
Query: 188 SVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247
+ GVE ++ + P + F+NK+DR + D + L + P+G
Sbjct: 115 AAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIG 174
Query: 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAM 307
FKGV L K + ++ + + + ++
Sbjct: 175 CGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA----------VGEDLA 224
Query: 308 ESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPA 367
+ + E + + ++ +AG PV G+A N GV +LD +V++ P+P+
Sbjct: 225 QQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQT 284
Query: 368 MKGT-DPENPEATLERAASDDEPFAGLAFKI---MSDPFVGSLTFVRVYAGTLSAGSYVL 423
T + F G FKI M + F+RV +G G +
Sbjct: 285 DTRTVEASED------------KFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLR 332
Query: 424 NANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTIT---GETLCDADH----- 475
K I L A R V+ A GDI+ GL + T G+T +
Sbjct: 333 QVRTAKDVVISDALTFMAGDRSHVEEAYPGDIL---GLHNHGTIQIGDTFTQGEMMKFTG 389
Query: 476 -----PILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTV 530
P L R+ DP+ K K ++ GL++L++E F R N +
Sbjct: 390 IPNFAPELFRRIRLKDPL-------KQK----QLLKGLVQLSEEGAVQVF-RPISNNDLI 437
Query: 531 IEGMGELHLEIIVDRLKREFK 551
+ +G L +++V RLK E+
Sbjct: 438 VGAVGVLQFDVVVARLKSEYN 458
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 6e-22
Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 16/121 (13%)
Query: 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTG----RNYKIGEVHEGTATMDWMEQEQERG 140
+ K+ RN I+AH+D GK+T +R+L YTG R + +D ++ E+ERG
Sbjct: 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-------EQLLDTLDVERERG 53
Query: 141 ITITSAATTTYW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQ 195
IT+ A ++ N +++++IDTPGHVDF+ EV RAL +GA+ L D+ G+E Q
Sbjct: 54 ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQ 113
Query: 196 S 196
+
Sbjct: 114 T 114
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 7e-09
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 44/230 (19%)
Query: 337 VLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396
+ SA + G++ +L+A+V+ +P P KG DP +P L F
Sbjct: 160 AILASAKEGIGIEEILEAIVNRIPPP------KG-DP-------------QKPLKALIFD 199
Query: 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAG 453
DP+ G++ FVR++ G + G ++ + GK+ +G AG
Sbjct: 200 SYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQ----TPKMTKFDKLSAG 255
Query: 454 DI-IALAGLK---DTITGETLCDADHPIL--LERMDFPDPVIKVAIEPKTKADIDKMANG 507
D+ A +K D G+T+ A +P + P++ I P +++ +
Sbjct: 256 DVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDA 315
Query: 508 LIKLAQEDPSFHFSRDEEINQTVIEGM-------GELHLEIIVDRLKREF 550
L K A D + + E + GM G LH+EI+ +RL+RE+
Sbjct: 316 LEKYAINDAAIVY----EPESSPALGMGFRVGFLGLLHMEIVQERLEREY 361
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 9e-22
Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 16/119 (13%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG----RNYKIGEVHEGTATMDWMEQEQERGIT 142
+K+ RN I+AHID GK+T ++R++ G R + +D M+ E+ERGIT
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-------AQVLDSMDLERERGIT 53
Query: 143 ITSAATTTYW-----NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQS 196
I + + T + +++N IDTPGHVDF+ EV R+L +GA+ + D+ GVE Q+
Sbjct: 54 IKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQT 112
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 5e-09
Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 44/230 (19%)
Query: 337 VLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396
+ SA GVQ +L+ +V +P P +G DP + P L
Sbjct: 158 AVRCSAKTGVGVQDVLERLVRDIPPP------EG-DP-------------EGPLQALIID 197
Query: 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAG 453
D ++G ++ +R+ GTL G V + G+ +R+G + D G
Sbjct: 198 SWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIF----TPKQVDRTELKCG 253
Query: 454 DI-IALAGLK---DTITGETLCDADHPIL--LERMDFPDPVIKVAIEPKTKADIDKMANG 507
++ + +K G+TL A +P L P + + P + D + +
Sbjct: 254 EVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDA 313
Query: 508 LIKLAQEDPSFHFSRDEEINQTVIEGM-------GELHLEIIVDRLKREF 550
L KL+ D S + E + G G LH+EII +RL+RE+
Sbjct: 314 LGKLSLNDASLFY----EPESSSALGFGFRCGFLGLLHMEIIQERLEREY 359
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA------------TMDWME 134
K + N+ ++ H+D GK+T R+L G + K + E A +D ++
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFD 187
+E+ERG+TI K+ IID PGH DF + + A+ V+ ++
Sbjct: 64 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 188 SVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTR-DMIVTNLGA 237
+ VE Q+ A G+ + I VNKMD + R IV +
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSK 175
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 30/185 (16%)
Query: 79 EESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTA--------- 128
+E + + K++ NI + H+DAGK+T +LF TG + + E E A
Sbjct: 32 QELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWY 91
Query: 129 ---TMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRV 178
+D +E+E+G T+ R +++D PGH + + + + V
Sbjct: 92 LSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLV 151
Query: 179 LDGAICLFDSVAGVEPQSETVWRQ----ADKYGVPR-ICFVNKMDRLGANFFRTR-DMIV 232
+ F+ AG E +T R+ A G+ + +NKMD + R V
Sbjct: 152 ISARRGEFE--AGFERGGQT--REHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECV 207
Query: 233 TNLGA 237
L
Sbjct: 208 DKLSM 212
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 6e-14
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 21/152 (13%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR-NYKIGEVHEGTAT------------MDWME 134
K + N+ ++ H+D+GK+TTT +++ G + + E E A +D ++
Sbjct: 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLK 64
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFD 187
E+ERGITI A K+++ +ID PGH DF T + + A+ ++ G + F+
Sbjct: 65 AERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 188 SVAGVEPQSETVWRQADKYGVPR-ICFVNKMD 218
+ + Q+ A GV + I VNKMD
Sbjct: 125 AGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 76 MAAEESKRVIPLKDYR--NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWM 133
S P D++ N+GI HID GKTT ++ + T T+ D +
Sbjct: 3 HHHHHSIEGRPHMDFKNINLGIFGHIDHGKTTLSKVL---TEI--------ASTSAHDKL 51
Query: 134 EQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE 193
+ Q+RGITI + +RI ++D PGH D V A ++D A+ + D+ G +
Sbjct: 52 PESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK 111
Query: 194 PQSETVWRQ----ADKYGVPRICFVNKMD 218
Q+ + D + +P I + K D
Sbjct: 112 TQT----GEHMLILDHFNIPIIVVITKSD 136
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 48/238 (20%)
Query: 3 AERMITASCSSAVCNFAMNGSQRRPVPVPVTVPRSLGLLPSPASHFLGSVCVFSPRSTSK 62
AE+M+ ++ G P V + +
Sbjct: 212 AEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETD 271
Query: 63 LSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTE---RVLFYTG---- 115
+ M+ E+ +R K + N+G + H+D GKTT T VL T
Sbjct: 272 FAAEVAAMSKQSHMSKEKFERT---KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA 328
Query: 116 RNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGHVDFTLEVE 173
R + +D +E+ RGITI + + Y +H + +D PGH D+
Sbjct: 329 RAF---------DQIDNAPEEKARGITI-NTSHVEYDTPTRHYAH-VDCPGHADY----- 372
Query: 174 RALRV---------LDGAICLFDSVAGVEPQS-ETVW--RQADKYGVPRI-CFVNKMD 218
V +DGAI + + G PQ+ E + RQ GVP I F+NK D
Sbjct: 373 ----VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 98 HIDAGKTTTTERVLFYTG---------------RNYKIGEVHEGTATMDWMEQEQERGIT 142
++D GK+T R+L + ++ G+ + +D ++ E+E+GIT
Sbjct: 32 NVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGIT 91
Query: 143 ITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ 202
I A K + I DTPGH +T + D AI L D+ GV+ Q+
Sbjct: 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI 151
Query: 203 ADKYGVPRICF-VNKMD 218
A G+ I +NKMD
Sbjct: 152 ASLLGIKHIVVAINKMD 168
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK 154
IM H+D GKTT + + R+ K+ E G GIT A N
Sbjct: 13 IMGHVDHGKTTLLDAI-----RHSKVTEQEAG-------------GITQHIGAYQVTVND 54
Query: 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFV 214
+I +DTPGH FT R +V D I + + GV PQ+ A VP I +
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAI 114
Query: 215 NKMDRLGANFFRTR 228
NKMD+ AN R
Sbjct: 115 NKMDKPEANPDRVM 128
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 33/188 (17%)
Query: 56 SPRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115
+ K+ ++ E+S K ++ + H+D+GK+T R++F G
Sbjct: 147 NQPEKKKIKKQNPTDLVSVPEIFEQSNP----KPVVHLVVTGHVDSGKSTMLGRIMFELG 202
Query: 116 R-NYKIGEVHEGTAT------------MDWMEQEQERGITITSAATTTYWNKHRINIIDT 162
N + + A +D E+E+ RG+T+ A+TT +K I D
Sbjct: 203 EINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA 262
Query: 163 PGHVDF-------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ----ADKYGVPR- 210
PGH DF + A+ V+D + F+ G +T R+ G+
Sbjct: 263 PGHRDFISGMIAGASSADFAVLVVDSSQNNFE--RGFLENGQT--REHAYLLRALGISEI 318
Query: 211 ICFVNKMD 218
+ VNK+D
Sbjct: 319 VVSVNKLD 326
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 45/194 (23%)
Query: 56 SPRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115
+ + ++A + + ++ H+DAGK+T R+L
Sbjct: 3 KTVQRYYKTTVPTKPKKPHDISAFVKSA----LPHLSFVVLGHVDAGKSTLMGRLL---- 54
Query: 116 RNYKIGEVHEGTAT-------------------MDWMEQEQERGITITSAATTTYWNKHR 156
Y + V++ MD +E+ERG+T++ + ++
Sbjct: 55 --YDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112
Query: 157 INIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ----ADK 205
I+D PGH DF + + A+ +D + F+ +G + +T ++ A
Sbjct: 113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE--SGFDLDGQT--KEHMLLASS 168
Query: 206 YGVPR-ICFVNKMD 218
G+ I +NKMD
Sbjct: 169 LGIHNLIIAMNKMD 182
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 32/169 (18%)
Query: 19 AMNGSQRRPVPVPVTVPRSLGLLPSPASHFLGSVCVFSPRSTSKLSPRSRRQFSVFAMAA 78
++ SQ+RP + + + ++ + A
Sbjct: 103 NISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVK 162
Query: 79 EESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT--------- 129
+ + ++ H+DAGK+T R+L Y + V++
Sbjct: 163 SA-------LPHLSFVVLGHVDAGKSTLMGRLL------YDLNIVNQSQLRKLQRESETM 209
Query: 130 ----------MDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168
MD +E+ERG+T++ + ++ I+D PGH DF
Sbjct: 210 GKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDF 258
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 50/341 (14%), Positives = 100/341 (29%), Gaps = 119/341 (34%)
Query: 50 GSVCVFSPRSTSKLSPRSRRQFSVFAMAAEESKRVIPLKDYRNIGI--MAHIDAGKTTTT 107
VF+ + S+L P + + A E L+ +N+ I + +GKT
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLR-----QALLE------LRPAKNVLIDGVL--GSGKTWVA 167
Query: 108 ERVLFYTGRNYKI-----GEVH-----EGTATMDWMEQEQERGITI----TSAATTTYWN 153
V +YK+ ++ + +E Q+ I TS + +
Sbjct: 168 LDVC----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 154 KHRINIIDTPGHVDFTLEV-ERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 212
K RI+ I + E L VL + V +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLL------N-----------VQN-------AKA- 258
Query: 213 FVNKMDRLGANFFR------TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
N + TR VT+ + + + + + L +
Sbjct: 259 -WNAFN------LSCKILLTTRFKQVTDFLSAATTTHISL--DHHSMT---LTPDEV--- 303
Query: 267 SGEELGAKFA---YEDIP---------------ANLQKMA---QEYRSQMIETIVELDDE 305
+ L K+ +D+P +++ ++ + +
Sbjct: 304 --KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL----TT 357
Query: 306 AMESYLEGNEPDEETIKKLIRKGTIAGSF-----VP--VLC 339
+ES L EP E +K+ + ++ F +P +L
Sbjct: 358 IIESSLNVLEPAE--YRKMFDRLSV---FPPSAHIPTILLS 393
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 5e-08
Identities = 74/537 (13%), Positives = 135/537 (25%), Gaps = 178/537 (33%)
Query: 79 EESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-------IGEVHEGTATMD 131
+ K ++ ++ +I I + + LF+T + + + EV
Sbjct: 40 DMPKSILSKEEIDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYK 92
Query: 132 W-MEQEQERGITITSAATTTYWNKH----RINIIDTPGHV---DFTLEVERALRVLDGAI 183
+ M + S T Y + N + +V L++ +AL L
Sbjct: 93 FLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--- 148
Query: 184 CLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243
V + G + LG+ G + +
Sbjct: 149 ----PAKNV-----LI------DG---------V--LGS-------------GKTWVALD 169
Query: 244 --LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301
L + I W + P + +M Q+ Q+
Sbjct: 170 VCLSYKVQCKMDF--------KIFW------LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVL-------CGSAFKNKGVQPLL-- 352
D + L + E +++L++ + VL +AF N + LL
Sbjct: 216 RSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLL-VLLNVQNAKAWNAF-NLSCKILLTT 272
Query: 353 -DA-VVDYLPSPL--DLPAMKGTDPENPEATLERAAS------DDEPFAGLAFKIMSDPF 402
V D+L + + + P+ D P +P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTT--NPR 328
Query: 403 VGSL--TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANS----------------R 444
S+ +R T + N K I +E N
Sbjct: 329 RLSIIAESIRDGLATWD---NWKHVNCDKLTTI---IESSLNVLEPAEYRKMFDRLSVFP 382
Query: 445 EDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTKADIDKM 504
I L ++ + D +
Sbjct: 383 PSAH----------------IPTILLS-----LIWFDVIKSDV--------------MVV 407
Query: 505 ANGLIK--LAQEDP-----SFHFSRDEEINQTVIEGMGELHLEIIVDR--LKREFKK 552
N L K L ++ P S S E+ +E LH IVD + + F
Sbjct: 408 VNKLHKYSLVEKQPKESTISIP-SIYLELKVK-LENEYALH-RSIVDHYNIPKTFDS 461
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 9e-07
Identities = 49/397 (12%), Positives = 108/397 (27%), Gaps = 134/397 (33%)
Query: 270 ELGA-KFAYEDI-PANLQKMAQEYRSQMIETIVE--LDDEAMESYLEGNEPDEET----- 320
E G ++ Y+DI + + ++ + + L E ++ + D +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRL 67
Query: 321 IKKLIRKGT-IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENP--- 376
L+ K + FV + +L +L SP+ + P
Sbjct: 68 FWTLLSKQEEMVQKFV-------------EEVLRINYKFLMSPI---KTEQRQPSMMTRM 111
Query: 377 -EATLERAASDDEPFA---------------GLAFKIMSDPFVGSLTFVRVYAGTLSAGS 420
+R +D++ FA L ++ V + G L +G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVL------ID-GVLGSGK 163
Query: 421 YVLNA-------------------NKGKKERIGRLLEMHAN--SREDVKVALAGDIIA-- 457
+ N +LEM + D D +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 458 ---LAGLKDTITGETLCDADHP----IL--------LERMDFPDPVIKVAIEPKTKADID 502
+ ++ + L + +L + K+ + + K D
Sbjct: 224 KLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLS---CKILLTTRFKQVTD 279
Query: 503 KMANGLIK-LAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHP--- 558
++ ++ + S + DE ++ + +L+ L RE +P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDE------VKSLLLKYLDCRPQDLPREVLT---TNPRRL 330
Query: 559 ------------------------KSTIVKAFLKSLK 571
+TI+++ L L+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 34/144 (23%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA----A 147
N+G + H+D GKTT T + + EV + +D +E+ RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEV-KDYGDIDKAPEERARGITINTAHVEYE 71
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRV---------LDGAICLFDSVAGVEPQS-E 197
T H +D PGH D+ + +DGAI + + G PQ+ E
Sbjct: 72 TAKRHYSH----VDCPGHADY---------IKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 198 TVW--RQADKYGVPRI-CFVNKMD 218
+ RQ GVP I F+NK+D
Sbjct: 119 HILLARQV---GVPYIVVFMNKVD 139
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 37/145 (25%)
Query: 92 NIGIMAHIDAGKTTTTE---RVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 148
N+G + H+D GKTT T ++L G +D +E+ RGITI +AA
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFK-----KYEEIDNAPEERARGITI-NAAH 58
Query: 149 TTY--WNKHRINIIDTPGHVDFTLEVERALRV---------LDGAICLFDSVAGVEPQS- 196
Y +H + D PGH D+ V LDG I + + G PQ+
Sbjct: 59 VEYSTAARHYAH-TDCPGHADY---------VKNMITGTAPLDGCILVVAANDGPMPQTR 108
Query: 197 ETVW--RQADKYGVPRI-CFVNKMD 218
E + RQ GV + +VNK D
Sbjct: 109 EHLLLARQI---GVEHVVVYVNKAD 130
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 24/139 (17%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKI--GEV-----HEGTATMDWMEQEQERGITITSAA 147
++ H+D GKTT + + R + E H G AT M+ +
Sbjct: 10 VLGHVDHGKTTLLDHI-----RGSAVASREAGGITQHIG-ATEIPMDVIEGICGDFLKKF 63
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALR-----VLDGAICLFDSVAGVEPQSETVWRQ 202
+ + IDTPGH FT LR + D AI + D G +PQ++
Sbjct: 64 SIRE-TLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFKPQTQEALNI 117
Query: 203 ADKYGVPRICFVNKMDRLG 221
Y P + NK+DR+
Sbjct: 118 LRMYRTPFVVAANKIDRIH 136
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 24/132 (18%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK 154
IM H+D GKT+ E + R+ K V G A GIT A
Sbjct: 9 IMGHVDHGKTSLLEYI-----RSTK---VASGEAG----------GITQHIGAYHVETEN 50
Query: 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA---GVEPQSETVWRQADKYGVPRI 211
I +DTPGH FT R + D + + VA GV PQ+ + A VP +
Sbjct: 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLV---VAADDGVMPQTIEAIQHAKAAQVPVV 107
Query: 212 CFVNKMDRLGAN 223
VNK+D+ A+
Sbjct: 108 VAVNKIDKPEAD 119
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 27/134 (20%)
Query: 95 IMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT--ITSAATTTYW 152
IM H+D GKTT L R ++ + G GIT I A +
Sbjct: 9 IMGHVDHGKTT-----LLDKLRKTQVAAMEAG-------------GITQHI-GAFLVSLP 49
Query: 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA---GVEPQSETVWRQADKYGVP 209
+ +I +DTPGH F+ R +V D I + VA GV Q+ + A VP
Sbjct: 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILV---VAADDGVMKQTVESIQHAKDAHVP 106
Query: 210 RICFVNKMDRLGAN 223
+ +NK D+ A+
Sbjct: 107 IVLAINKCDKAEAD 120
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 12/148 (8%), Positives = 32/148 (21%), Gaps = 58/148 (39%)
Query: 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA 146
N+ I+ +G+T+ ++G +
Sbjct: 18 GSHMANVAIIGTEKSGRTSLAA--------------------------NLGKKGTSSDIT 51
Query: 147 ATTTYWNKHRINIIDTPGHVDFTLEVERALRV---------LDGAICLFDSVA--GVEPQ 195
+ +D + + D A+ + G++
Sbjct: 52 MYNNDKEGRNMVFVDAHSYPKT---------LKSLITALNISDIAVLC---IPPQGLDAH 99
Query: 196 SETVWRQ----ADKYGVPRI-CFVNKMD 218
+ + D G + + D
Sbjct: 100 T----GECIIALDLLGFKHGIIALTRSD 123
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 34/146 (23%)
Query: 92 NIGIMAHIDAGKTTTT--------ERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITI 143
NIG++ H+D GKTT + L Y IG + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKKLGYA--ETNIGV-----CESCKKPEAYVTEPSC 62
Query: 144 -TSAATTTYWNKHRINIIDTPGHVDFTLEVERAL---RVLDGAICLFDSVAGVE--PQSE 197
+ + RI+ ID PGH + L ++DGAI + VA E PQ +
Sbjct: 63 KSCGSDDEPKFLRRISFIDAPGHEVL---MATMLSGAALMDGAILV---VAANEPFPQPQ 116
Query: 198 TVWRQ----ADKYGVPRI-CFVNKMD 218
T R+ GV + NK+D
Sbjct: 117 T--REHFVALGIIGVKNLIIVQNKVD 140
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 571 | |||
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 100.0 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 100.0 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 100.0 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 100.0 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 100.0 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 100.0 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 100.0 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 100.0 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 100.0 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 100.0 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 100.0 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 100.0 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 100.0 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 100.0 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 100.0 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 100.0 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 100.0 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 100.0 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 100.0 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 100.0 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 100.0 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 100.0 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 100.0 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 100.0 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 100.0 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 100.0 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 100.0 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 100.0 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.98 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.98 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.97 | |
| 3e3x_A | 332 | BIPA; MCSG,PSI2, structural genomics, protein stru | 99.87 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.83 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.82 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.81 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.81 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.8 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.8 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.8 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.79 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.79 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.79 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.79 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.78 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.78 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.78 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.78 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.78 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.78 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.78 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.77 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.77 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.77 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.77 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.77 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.77 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.77 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.77 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.77 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.77 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.77 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.77 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.77 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.76 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.76 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.76 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.76 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.76 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.76 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.76 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.76 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.76 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.75 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.75 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.75 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.75 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.75 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.75 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.75 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.75 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.75 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.75 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.75 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.75 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.75 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.75 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.74 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.74 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.74 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.74 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.74 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.74 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.74 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.74 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.74 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.74 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.74 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.74 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.74 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.74 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.74 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.74 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.74 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.74 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.73 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.73 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.73 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.73 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.73 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.73 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.73 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.73 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.73 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.73 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.73 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.73 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.73 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.72 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.72 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.72 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.72 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.72 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.72 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.72 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.72 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.72 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.72 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.72 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.71 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.71 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.71 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.71 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.7 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.7 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.7 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.7 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.7 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.7 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.69 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.69 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.69 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.69 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.69 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.68 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.68 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.68 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.68 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.68 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.67 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.67 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.67 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.67 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.66 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.66 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.65 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.65 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.64 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.63 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.63 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.63 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.62 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.61 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.61 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.4 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.6 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.6 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.6 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.58 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.57 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.56 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.55 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.55 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.53 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.52 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.51 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.51 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.5 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.48 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.47 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.46 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.45 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.44 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.44 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.43 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.43 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.42 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.41 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.39 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.38 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.36 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.35 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.34 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.29 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.26 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.23 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.08 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.05 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.0 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.0 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.0 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.99 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.87 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.84 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.77 | |
| 3e1y_E | 204 | Eukaryotic peptide chain release factor GTP-bindi | 98.77 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.67 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.66 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.62 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.62 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.61 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.59 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.54 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.4 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.34 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.34 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.32 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.31 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.3 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.22 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 98.21 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.2 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.16 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.15 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.1 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.93 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.92 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.87 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.86 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.84 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.83 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.77 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.75 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 97.74 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.72 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.69 | |
| 1xe1_A | 116 | Hypothetical protein PF0907; structural genomics, | 97.68 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.62 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.62 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.59 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.57 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.57 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 97.46 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 97.41 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.39 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.34 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 97.31 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.3 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 97.21 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 97.2 | |
| 1d1n_A | 99 | Initiation factor 2; beta-barrel, gene regulation; | 97.12 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 97.05 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 97.05 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.05 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 97.01 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 97.0 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 96.94 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 96.82 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 96.8 | |
| 2crv_A | 120 | IF-2MT, translation initiation factor IF-2; riboso | 96.79 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.77 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.71 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.67 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 96.38 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 96.13 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.01 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 95.89 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 95.71 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 95.67 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.54 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 95.5 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 95.49 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 95.49 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 95.36 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 95.3 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 95.25 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 94.87 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.84 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 94.83 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.67 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 94.59 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.5 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 94.41 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 94.33 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 94.16 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 94.08 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 94.04 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 93.93 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 93.92 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.91 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 93.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 93.77 | |
| 2woo_A | 329 | ATPase GET3; tail-anchored, membrane protein, targ | 93.75 | |
| 3io3_A | 348 | DEHA2D07832P; chaperone, membrane traffic, ATPase; | 93.73 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 93.69 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 93.65 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 93.64 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 93.63 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 93.62 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 93.53 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 93.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 93.49 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.47 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 93.41 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 93.41 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 93.33 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 93.3 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 93.26 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 93.18 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 93.12 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 93.12 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 93.06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 93.05 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 93.0 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.96 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 92.93 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 92.86 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 92.83 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 92.79 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 92.75 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 92.73 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 92.71 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 92.66 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 92.59 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 92.54 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 92.54 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 92.53 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 92.52 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 92.48 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 92.44 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 92.43 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 92.43 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 92.37 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 92.37 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 92.36 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 92.36 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 92.32 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 92.31 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 92.31 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 92.3 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 92.28 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 92.26 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 92.25 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 92.24 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 92.24 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 92.21 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 92.19 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 92.16 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 92.15 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 92.15 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 92.14 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 92.12 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 92.12 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 92.11 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 92.1 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 92.05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 92.01 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 92.01 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 92.01 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 91.98 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 91.93 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 91.93 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 91.88 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 91.87 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 91.86 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 91.86 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 91.83 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 91.82 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 91.82 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 91.81 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 91.8 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 91.79 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 91.77 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 91.74 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 91.74 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 91.73 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 91.7 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 91.7 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 91.61 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 91.6 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 91.58 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 91.58 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 91.57 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 91.55 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 91.49 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 91.47 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 91.46 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 91.42 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 91.41 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 91.36 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 91.35 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.35 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 91.32 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 91.28 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 91.28 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 91.26 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 91.24 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 91.09 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 91.08 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 91.07 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 91.06 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 90.98 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 90.97 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 90.95 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 90.86 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 90.82 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 90.82 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 90.79 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 90.75 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 90.73 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 90.71 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 90.67 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 90.66 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 90.66 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 90.66 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 90.6 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 90.56 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 90.47 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 90.45 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 90.42 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 90.37 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 90.31 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 90.31 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 90.3 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 90.28 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 90.17 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 90.16 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 90.12 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 90.1 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 90.09 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 90.06 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 89.95 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 89.92 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 89.89 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 89.85 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 89.79 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 89.72 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 89.72 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 89.68 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 89.62 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 89.6 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 89.56 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 89.51 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 89.48 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 89.46 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 89.44 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 89.33 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 89.3 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 89.18 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 89.18 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 89.14 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 88.98 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 88.95 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 88.94 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 88.85 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 88.85 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 88.79 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 88.77 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 88.47 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 88.07 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 88.04 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 87.89 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 87.85 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 87.72 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 87.57 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 87.51 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 87.47 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 87.45 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 87.3 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 87.27 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 87.07 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 87.07 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 87.06 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 87.05 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 87.05 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 87.04 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 87.0 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 86.98 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 86.94 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 86.78 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 86.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 86.76 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 86.69 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 86.6 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 86.54 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 86.17 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 86.08 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 86.02 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 85.99 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 85.95 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 85.93 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 85.92 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 85.87 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 85.56 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 85.46 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 85.45 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 85.42 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 85.3 |
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-94 Score=817.23 Aligned_cols=485 Identities=61% Similarity=0.989 Sum_probs=439.2
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-------CeEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-------KHRI 157 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-------~~~i 157 (571)
.|.+++|||+|+||+|||||||+++|++.+|.+.+.|+++.|++++|++++|++||+|+.++.+++.|. ++.|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 466789999999999999999999999999999999999999999999999999999999999999985 6899
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCC
Q 008294 158 NIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 158 ~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 237 (571)
||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.++++|.++|+||||+..+++..+++++++.|+.
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCC
Q 008294 238 KPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPD 317 (571)
Q Consensus 238 ~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~ 317 (571)
.+.++++|++.+++|.|++|++.+++++|.....|+.+...++|.++.+....+|..++|.+++.|++++++|+++.+++
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEE
Q 008294 318 EETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKI 397 (571)
Q Consensus 318 ~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~ 397 (571)
.+++...++.....+.++|++++||+++.|++.|||+|++++|+|.+.+..+....++......+.|++++|++++|||+
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~ 327 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKI 327 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEEC
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEe
Confidence 99999999999999999999999999999999999999999999999877766555455556678899999999999999
Q ss_pred eecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcc
Q 008294 398 MSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPI 477 (571)
Q Consensus 398 ~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~ 477 (571)
..|++.|+++|+|||||+|++||.|+|...++.+++++++.++|+++++|++|.|||||+|.|++++.+|||||+.+.+.
T Consensus 328 ~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~ 407 (709)
T 4fn5_A 328 ATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPI 407 (709)
T ss_dssp CCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCC
T ss_pred ecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEe
Q 008294 478 LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVH 557 (571)
Q Consensus 478 ~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~ 557 (571)
.++++.+|+|+++++|+|.+++|++||.++|++|++|||++++++++||||++|+|||||||||+++|||++||+|++++
T Consensus 408 ~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs 487 (709)
T 4fn5_A 408 ILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIG 487 (709)
T ss_dssp BCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCB
T ss_pred cCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEEec
Q 008294 558 PKSTIVKAFLKS 569 (571)
Q Consensus 558 ~p~i~yke~~~~ 569 (571)
+|.|.|||||++
T Consensus 488 ~P~V~yrETi~~ 499 (709)
T 4fn5_A 488 KPQVAYRETITK 499 (709)
T ss_dssp CCCCCCEEECCC
T ss_pred eceEEEEEEEec
Confidence 999999999964
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-88 Score=764.22 Aligned_cols=484 Identities=61% Similarity=1.001 Sum_probs=455.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-------eEEE
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------HRIN 158 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------~~i~ 158 (571)
+.++++||+|+||+|+|||||+++|++.+|.+...|.++.|.+++|+++.|+++|+|+......+.|++ +.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 446789999999999999999999999889888888888889999999999999999999999999987 9999
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|||||||.+|..++.++++.+|++|+|||+++|+..+++.+|+.+...++|+++|+||+|+..+++.++++++++.++..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCH
Q 008294 239 PLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDE 318 (571)
Q Consensus 239 ~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~ 318 (571)
+.++++|++.+.+|+|++|++.+++++|+....|..+...++|+++.+...++|..|+|.+++.||++|++||+|.+++.
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999997644577788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEe
Q 008294 319 ETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIM 398 (571)
Q Consensus 319 ~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 398 (571)
+++...+++++..+.++|+||+||++|.|++.|||+|++++|+|.+++..++..+.++.....+.|++++||+++|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886655432211111124577889999999999999
Q ss_pred ecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCccc
Q 008294 399 SDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPIL 478 (571)
Q Consensus 399 ~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~ 478 (571)
.|+++|+++|+|||||+|++||.|++.+.++.++|++|+.++|+++++|++|.|||||+|.|++++.+|||||+.+.+..
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~ 405 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPII 405 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred ccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEec
Q 008294 479 LERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHP 558 (571)
Q Consensus 479 l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~ 558 (571)
++++.++.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++++++
T Consensus 406 l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~ 485 (704)
T 2rdo_7 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485 (704)
T ss_pred cCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEec
Q 008294 559 KSTIVKAFLKS 569 (571)
Q Consensus 559 p~i~yke~~~~ 569 (571)
|.|.|||||++
T Consensus 486 p~V~yrEti~~ 496 (704)
T 2rdo_7 486 PQVAYRETIRQ 496 (704)
T ss_pred CEEEEEEeecc
Confidence 99999999974
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-87 Score=748.44 Aligned_cols=483 Identities=57% Similarity=0.934 Sum_probs=428.6
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+.+++++|+|+||+|+|||||+|+|++.++.+...+.+.++.+++|+.+.|+++|+|+......+.|+++.++||||||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 84 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPG 84 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcC
Confidence 45677999999999999999999999988888877777888889999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
|.+|..++.++++.+|++|+|+|+.+++..++...|..+...++|+++|+||+|+..++..++++++++.++..+.+.++
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEE
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred cCCCCCCcceeeecccceeEEec-CCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWS-GEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
|++.+.+|.+++|++.++.++|. . .|+.+...++|+.+.+.++.+|+.++|.+++.||++|++||+|.+++.+++..
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTND--LGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSS--SSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccC--CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999997 3 47778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFV 403 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~ 403 (571)
.+++++..+.++||||+||++|.|++.|||+|++++|+|.+++.+++..+.+.+....+.|++++||+++|||++.|+++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCC
Confidence 99999999999999999999999999999999999999987654332111111233467788999999999999999999
Q ss_pred ceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCC
Q 008294 404 GSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMD 483 (571)
Q Consensus 404 G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~ 483 (571)
|+++|+|||||+|++||.|++..+++.++|++|+.++|+++++|++|.|||||+|.|++++.+|||||+.+.+..+++++
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred ceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEE
Q 008294 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIV 563 (571)
Q Consensus 484 ~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~y 563 (571)
++.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++++++|.|.|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 008294 564 KAFLKS 569 (571)
Q Consensus 564 ke~~~~ 569 (571)
||||++
T Consensus 483 rEti~~ 488 (693)
T 2xex_A 483 RETFKS 488 (693)
T ss_dssp EEEESS
T ss_pred EEEecc
Confidence 999985
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-88 Score=741.37 Aligned_cols=458 Identities=28% Similarity=0.425 Sum_probs=376.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCc----ccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGT----ATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~----~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
.++|||+|+||+|||||||+++||+.+|.+.+.|.++.|+ +++|++++|++||+|+.++..++.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 4689999999999999999999999999999999998774 889999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.||..++.++|+.+|+||+||||.+|++.||+.+|+++.++++|+++||||||+.++++.+++++|++.|+..+.|++
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHh-cCCCCCHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYL-EGNEPDEETIK 322 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l-~~~~~~~~~l~ 322 (571)
+||+.+..|.|++|++.++++.|.....+.......+.....+...+......+.. ...++.+. .+.+...
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~---- 260 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL----RMDLALLEEAGTPFDE---- 260 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHH----HHHHHHHHHHCCCCCH----
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHh----hhHHHHHhhccCchhH----
Confidence 99999999999999999999999876544433332222211111111111111111 11111111 1222332
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeec--
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSD-- 400 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d-- 400 (571)
+.+..+.++||||+||++|.|++.|||+|++++|+|.+....... ..+.+.||.++|||+..+
T Consensus 261 ----e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~-----------~~~~~~p~~a~vfKi~~~~~ 325 (548)
T 3vqt_A 261 ----ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRV-----------VEPGEEAFTGVVFKIQANMD 325 (548)
T ss_dssp ----HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSE-----------ECTTCSSCEEEEEEEECC--
T ss_pred ----HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccc-----------cCCCCcCceEEEEEEEccCC
Confidence 234567899999999999999999999999999999875432211 123467999999999876
Q ss_pred -CCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccc
Q 008294 401 -PFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479 (571)
Q Consensus 401 -~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l 479 (571)
+++|+++|+|||||+|++||.|+|.++++.+|+++++.++|+++++|++|.|||||+|.|++++.+|||||+.+.+..+
T Consensus 326 ~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~ 405 (548)
T 3vqt_A 326 KAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKF 405 (548)
T ss_dssp -----CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCB
T ss_pred cCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEE----
Q 008294 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLML---- 555 (571)
Q Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~---- 555 (571)
++++++.|+++++|+|+++.|.+||.++|++|+++|| +.+.++++|||++|+|||||||||+++||+++||||+.
T Consensus 406 ~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v 484 (548)
T 3vqt_A 406 VGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGV 484 (548)
T ss_dssp CCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeec
Confidence 9999999999999999999999999999999999998 56778899999999999999999999999999999976
Q ss_pred -EecCeEEEEEEEec
Q 008294 556 -VHPKSTIVKAFLKS 569 (571)
Q Consensus 556 -~~~p~i~yke~~~~ 569 (571)
++.|+|.|||+|+.
T Consensus 485 ~~~~P~V~YrEti~~ 499 (548)
T 3vqt_A 485 STHTARWVYCEDKKI 499 (548)
T ss_dssp SCCEEEEEECSCHHH
T ss_pred cccCceEEecCCccc
Confidence 57799999999974
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-86 Score=745.20 Aligned_cols=481 Identities=59% Similarity=0.952 Sum_probs=382.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+++++|+|+||+|+|||||+++|++.+|.....+.++.+.+++|+++.|+++|+|+......+.|+++.++|||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 34568999999999999999999999998988888888888899999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|..++.++++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+..++..++++++++.++..+.+.++|
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
++.+.+|.|++|++.+++++|.+. .|..+...++|+++.+..+.+|+.++|.+++.||++|++||+|.+++.+++...+
T Consensus 168 i~~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~ 246 (691)
T 1dar_A 168 IGREDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246 (691)
T ss_dssp ESCGGGCCEEEETTTTEEEEECST-TSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCCCcccchhhhhcceeeEeccC-CCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence 999999999999999999999722 3666788899999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCce
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGS 405 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~ 405 (571)
++.+..+.++|+|++||++|.|++.||++|++++|+|.+++.+++... .+....+.|++++|++++|||++.|+++|+
T Consensus 247 ~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~ 324 (691)
T 1dar_A 247 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP--EGEVVEIHPDPNGPLAALAFKIMADPYVGR 324 (691)
T ss_dssp HHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS--SSCEEEECCCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC--CccccccccCCCCCcEEEEEEEEEcCCCCc
Confidence 999999999999999999999999999999999999998655433221 122346778899999999999999999999
Q ss_pred EEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCc-ccccCCCC
Q 008294 406 LTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLERMDF 484 (571)
Q Consensus 406 i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~-~~l~~~~~ 484 (571)
++|+|||||+|++||.|++.++++.++|++|+.++|+++++|++|.|||||+|.|++++.+|||||+...+ ..++++.+
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~~ 404 (691)
T 1dar_A 325 LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEV 404 (691)
T ss_dssp EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC----
T ss_pred EEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888 88999999
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
+.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+++||+++++++|.|.||
T Consensus 405 ~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yr 484 (691)
T 1dar_A 405 PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484 (691)
T ss_dssp ----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCCE
T ss_pred CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 008294 565 AFLKS 569 (571)
Q Consensus 565 e~~~~ 569 (571)
|||++
T Consensus 485 Eti~~ 489 (691)
T 1dar_A 485 ETITK 489 (691)
T ss_dssp EECSS
T ss_pred Eeecc
Confidence 99975
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-78 Score=678.23 Aligned_cols=455 Identities=29% Similarity=0.501 Sum_probs=432.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.++.++|+|+||+|+|||||+++|+...+.....|.+..|.+++|+.+.|+++|+|+......+.+.++.++|||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45689999999999999999999998888777777777888999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+|..++.++++.+|++++|+|+.+|+..+++.+|+.+...++|+++|+||+|+. .+..++++++++.++ .+.+.++|+
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~Pi 163 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLPL 163 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEEeee
Confidence 999999999999999999999999999999999999999999999999999999 888999999999999 888999999
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
+.+.+|.+++|++.+++++|+. |. +...++|+++.+..+.+|+.++|.+++.|++++++|++|.+++.+++...++
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~ 239 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYEN---GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH 239 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEET---TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCC---Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999976 33 6778899999999999999999999999999999999999999999999999
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
+.+..+.++|++++||++|.|+++||++|++++|+|.+. ++++|++++|||++.|+++|++
T Consensus 240 ~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------------------~~~~p~~~~V~k~~~d~~~G~~ 300 (665)
T 2dy1_A 240 EAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------------------FGDGPPLAKVFKVQVDPFMGQV 300 (665)
T ss_dssp HHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------------------HCSCSCEEEEEEEEEETTTEEE
T ss_pred HHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-------------------CCCCCeEEEEEEEEEcCCCCeE
Confidence 999999999999999999999999999999999999642 0368999999999999999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCc--ccccCCCC
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP--ILLERMDF 484 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~--~~l~~~~~ 484 (571)
+++|||||+|++||.|++.+ +.++|++|+.++|++++++++|.|||||+|.|++++.+|||||+.+.+ ..++++++
T Consensus 301 ~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~ 378 (665)
T 2dy1_A 301 AYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARL 378 (665)
T ss_dssp EEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCC
T ss_pred EEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCC
Confidence 99999999999999999887 678999999999999999999999999999999999999999998887 78999999
Q ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEE
Q 008294 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVK 564 (571)
Q Consensus 485 ~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yk 564 (571)
+.|+++++|+|++++|++||.++|++|++|||+|++++|+||||++|+|||||||||+++||+ +||+++++++|.|.||
T Consensus 379 ~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yr 457 (665)
T 2dy1_A 379 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYR 457 (665)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCE
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEec
Q 008294 565 AFLKS 569 (571)
Q Consensus 565 e~~~~ 569 (571)
|||++
T Consensus 458 Eti~~ 462 (665)
T 2dy1_A 458 ETIKK 462 (665)
T ss_dssp EEESS
T ss_pred Eeecc
Confidence 99975
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-83 Score=712.02 Aligned_cols=425 Identities=27% Similarity=0.451 Sum_probs=391.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++|||+|+||+|||||||+++|++.+|.+.+.|.++.|++++|++++|++||+|+.++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCC
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGA 248 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~ 248 (571)
..++.++++.+|++|+||||.+|++.||+.+|+++.++++|.++|+||||+..+++.++++++++.|+..++..+.
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~---- 156 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK---- 156 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC----
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred CCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhh
Q 008294 249 EDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKG 328 (571)
Q Consensus 249 ~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~ 328 (571)
+++...... . .+. ..++.|.+++.||++|++|+++..++..++...++..
T Consensus 157 -------~~~~~~~~~--------~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 157 -------VELYPNVCV--------T-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp -------CCSCGGGCC--------C-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred -------eEeeccccc--------c-----ccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 111111100 0 001 1245688889999999999999999999999999999
Q ss_pred cccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEE
Q 008294 329 TIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTF 408 (571)
Q Consensus 329 ~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~ 408 (571)
+..+.++|++++||++|.|++.|||+|.+++|+|.+. ++.|+.++|||+..|+++|+++|
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~--------------------~~~~~~~~Vfk~~~d~~~G~la~ 266 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR--------------------GPSELCGNVFKIEYTKKRQRLAY 266 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG--------------------SCCCCCBEEBCCCCCSTTCCCCB
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc--------------------hhhhhcceeeeeeeeccCceEEE
Confidence 9999999999999999999999999999999999752 36789999999999999999999
Q ss_pred EEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccccCCCCCCce
Q 008294 409 VRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFPDPV 488 (571)
Q Consensus 409 ~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv 488 (571)
+|||||+|++||.|++...+ ++++.+++.++|++++++++|.|||||+|.| ..+.+|+|+++...+..+.++.+|.|+
T Consensus 267 ~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 267 IRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp CCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEcCcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCcc
Confidence 99999999999999887654 5789999999999999999999999999988 567889999998888888899999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEEEe
Q 008294 489 IKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAFLK 568 (571)
Q Consensus 489 ~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~~~ 568 (571)
++++|+|.++.|++||.++|++|++|||++++++++++||++|+|||||||||+++||+++||+|+++++|.|.|||+|+
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred ceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 008294 569 S 569 (571)
Q Consensus 569 ~ 569 (571)
+
T Consensus 425 ~ 425 (638)
T 3j25_A 425 K 425 (638)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-78 Score=654.87 Aligned_cols=458 Identities=26% Similarity=0.409 Sum_probs=397.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeec----CcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE----GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~----g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
+++|+|+|+||+|+|||||+++|++.+|.+...|.+.. +.+++|+.+.|+++|+|+......+.++++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 35899999999999999999999999998887777654 45788999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.+|..++.++++.+|++|+|+|+.+++..++..+|..+...++|+++|+||+|+..++..+.++++++.++....+++
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
+|++.+..|+|++|++.++++.|.... |......++++++.+. .+++.+.+. +++|+++.++..++...
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGK-HERVGESERIEGINNP--ELDKKLGDL--------ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTS-SSSTTCSCEEECTTCH--HHHHHHTHH--------HHHHHHHHHHHHHHSCC
T ss_pred cccccCCceeEEEEeecCEEEEecCCC-CCcccccccccccchH--HHHHHHHHH--------HHHHhhhcchhhhhhhH
Confidence 999999999999999999999997643 3333333444433221 222222222 45555432222121111
Q ss_pred HHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee--cC
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--DP 401 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--d~ 401 (571)
..++++..+.++|||++||++|.||++||++|.+++|+|.+...... .+.+ .+.||+++|||+.. ||
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~----------~~~~-~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSR----------LVKP-EEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSS----------CBCT-TSSSCEEEEEEEEECCC-
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccce----------eeCC-CcccceeEEEEEecccCc
Confidence 12666778899999999999999999999999999999987543211 1112 36899999999985 88
Q ss_pred -CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCccccc
Q 008294 402 -FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILLE 480 (571)
Q Consensus 402 -~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~ 480 (571)
++|+++|+|||||+|++||.|++.++++.+++++++.++|.++++|++|.||||+++.|++++.+|||||+ +.+..+.
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~-~~~~~~~ 387 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKFT 387 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEES-SCCCCBC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcC-CCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4566778
Q ss_pred CCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCe
Q 008294 481 RMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKS 560 (571)
Q Consensus 481 ~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~ 560 (571)
++.++.|+++.+|+|+++.|.+||..||++|++|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|.
T Consensus 388 ~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~ 466 (528)
T 3tr5_A 388 GIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVN 466 (528)
T ss_dssp CCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCS
T ss_pred CCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 8888899999999999999999999999999999996 888899999999999999999999999999999999999999
Q ss_pred EEEEEEEec
Q 008294 561 TIVKAFLKS 569 (571)
Q Consensus 561 i~yke~~~~ 569 (571)
|.|++||..
T Consensus 467 v~~~~~i~~ 475 (528)
T 3tr5_A 467 VVTARWVIC 475 (528)
T ss_dssp CCEEEEEEC
T ss_pred eEEEEEecC
Confidence 999999975
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-76 Score=645.47 Aligned_cols=458 Identities=25% Similarity=0.413 Sum_probs=369.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecC----cccccchhhhhhhceeEeeceEEEeecCeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEG----TATMDWMEQEQERGITITSAATTTYWNKHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g----~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTP 163 (571)
++.++|+|+||+|+|||||+++|++..+.+...|.+..+ .+++|+.+.|+++|+|+......+.++++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 357999999999999999999999877777666665443 5788999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
||.+|..++.++++.+|++|+|+|+.+++..+++.+|..+...++|+++|+||+|+..++..++++++++.++....+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeee-ecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAY-EDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
+|++....+.|++|++.+.++.|.... |..+.. .++|. +.+. .+.|. .+++++++|+++.++..+++.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~-g~~~~~~~~i~~-~~~~------~l~e~---~~~~~~~~~~e~~~l~~~~~~ 239 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGK-GHTIQEVRIVKG-LNNP------DLDAA---VGEDLAQQLRDELELVKGASN 239 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTC-CSSCCCCCEECC-SSCH------HHHHH---HCHHHHHHHHHHHHHHHHHSC
T ss_pred cceecccCcceeeehhhhhHhhhcccC-CCcccccccCCC-CCHH------HHHHh---hCHHHHHHhhcccchhhhhhh
Confidence 999999999999999999999996421 321111 22221 1110 12222 267788888876444444333
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee---
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS--- 399 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--- 399 (571)
..+++.+..+.++|||++||++|.||+.|||+|.+++|+|.++... ...+.++ ++||.++|||+..
T Consensus 240 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~----------~~~~~~~-~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 240 EFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD----------TRTVEAS-EDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS----------SCEECTT-CCSCEEEEEEECSSCC
T ss_pred hhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc----------ccccCCC-CCCeEEEEEEEeeccC
Confidence 3445677788999999999999999999999999999999864320 0112232 6899999999975
Q ss_pred cCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCccccceecCCCCcccc
Q 008294 400 DPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHPILL 479 (571)
Q Consensus 400 d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l 479 (571)
++++|+++|+||+||+|++||.|++.+.++.++|++++.++|.++++|++|.|||||+|.|++++.+|||||+.+ +..+
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~ 387 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKF 387 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCB
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-cccc
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999877 5678
Q ss_pred cCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecC
Q 008294 480 ERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPK 559 (571)
Q Consensus 480 ~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p 559 (571)
+++.++.|+++++|+|+++.|.+||.++|++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+++|
T Consensus 388 ~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~ 466 (529)
T 2h5e_A 388 TGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESV 466 (529)
T ss_dssp CCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecC
Confidence 8888999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEec
Q 008294 560 STIVKAFLKS 569 (571)
Q Consensus 560 ~i~yke~~~~ 569 (571)
.|.|||||..
T Consensus 467 ~v~y~eti~~ 476 (529)
T 2h5e_A 467 NVATARWVEC 476 (529)
T ss_dssp CCSEEEEEEC
T ss_pred ceeEEEEEcC
Confidence 9999999963
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-75 Score=667.35 Aligned_cols=468 Identities=28% Similarity=0.403 Sum_probs=382.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~------------- 153 (571)
.++++||+|+||+|+|||||+++|++.+|.+...+ ..+++++|+.++|+++|+|+......+.|.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 34689999999999999999999998888766544 345688899999999999999998888876
Q ss_pred ---CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc---------
Q 008294 154 ---KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG--------- 221 (571)
Q Consensus 154 ---~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~--------- 221 (571)
++.++|||||||.+|..++.++++.+|++|+|||+.+|+..++..+|..+...++|+++|+||+|+..
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred --cchhhhHHHHHHHhC-----------CcceeeeccCCCC----------------CCcceeeecccceeE---EecCC
Q 008294 222 --ANFFRTRDMIVTNLG-----------AKPLVVQLPVGAE----------------DNFKGVVDLVKMKAI---IWSGE 269 (571)
Q Consensus 222 --~~~~~~~~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~~~id~~~~~~~---~~~~~ 269 (571)
+++.+++++++..++ ..+.+.++|++.. .+|...++.+.++.| +|+..
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 335667777777752 4444556776554 345444555555555 56442
Q ss_pred CCCceeeeecccH-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCCCHHHHH---HHHHhhcccCcceee
Q 008294 270 ELGAKFAYEDIPA-------NLQKMAQEYRSQMIETIVELDDEAMESYLEG--NEPDEETIK---KLIRKGTIAGSFVPV 337 (571)
Q Consensus 270 ~~g~~~~~~~~~~-------~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~--~~~~~~~l~---~~l~~~~~~~~~~Pv 337 (571)
|..+...++|+ .+.+.....+..|+|++++.|+++|++||++ ..++.+++. ..+++.+ .+.++|+
T Consensus 254 --~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv 330 (842)
T 1n0u_A 254 --TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA 330 (842)
T ss_dssp --TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH
T ss_pred --CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch
Confidence 44455444443 5666778899999999999999999999986 688888887 7788777 6688898
Q ss_pred eeccccCCCChHHHHHHHHHhCCCCCCCCCCCCC-----CCCCccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEE
Q 008294 338 LCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGT-----DPENPEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRV 411 (571)
Q Consensus 338 ~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV 411 (571)
++.|||+|++++|+|.+++.+++. ..++......+.|++++|++++|||+..++++|+ ++|+||
T Consensus 331 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 331 ----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp ----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred ----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 699999999999999865332110 0011222345678999999999999999999995 999999
Q ss_pred ecceeCCCCEE------EeCCCCc---eeecceEEEeccCceeecCeecCCCEEEEeCCCCcccc-ceecCCCCcccccC
Q 008294 412 YAGTLSAGSYV------LNANKGK---KERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITG-ETLCDADHPILLER 481 (571)
Q Consensus 412 ~sG~l~~gd~v------~~~~~~~---~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~G-dtl~~~~~~~~l~~ 481 (571)
|||+|++||.| +|.+.++ .+||++|+.++|+++++|++|.|||||+|.|++++.+| +|||+...+..+.+
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~ 480 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 480 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCC
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCcccccc
Confidence 99999999999 4444555 68999999999999999999999999999999998554 69999888888999
Q ss_pred CCCC-CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecC
Q 008294 482 MDFP-DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPK 559 (571)
Q Consensus 482 ~~~~-~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p 559 (571)
+.++ .|+++++|+|+++.|++||.+||++|++|||+|++++| ||||++|+|||||||||+++||+++| |+++++++|
T Consensus 481 ~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P 559 (842)
T 1n0u_A 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 559 (842)
T ss_dssp CCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECC
T ss_pred CCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCc
Confidence 9988 69999999999999999999999999999999999998 89999999999999999999999999 999999999
Q ss_pred eEEEEEEEecC
Q 008294 560 STIVKAFLKSL 570 (571)
Q Consensus 560 ~i~yke~~~~~ 570 (571)
.|.|||||++.
T Consensus 560 ~V~yrETi~~~ 570 (842)
T 1n0u_A 560 VVAYRETVESE 570 (842)
T ss_dssp CCCCEEEESSC
T ss_pred EEEEEEeeccc
Confidence 99999999853
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-63 Score=547.41 Aligned_cols=361 Identities=29% Similarity=0.489 Sum_probs=304.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEEEc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIID 161 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liD 161 (571)
.+++|||+|+||+|+|||||+++|++.+|.+...+ .+.+++|+.+.|+++|+|+......+.|. .+.++|||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 35689999999999999999999998888665432 25688999999999999999998888775 37999999
Q ss_pred CCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCccee
Q 008294 162 TPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLV 241 (571)
Q Consensus 162 TPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 241 (571)
||||.+|..++.++++.+|++|+|||+++|++.|+..+|..+...++|+++|+||+|+..++..++.+++++.++..
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~--- 156 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD--- 156 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC---
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999998877666666666654431
Q ss_pred eeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHH
Q 008294 242 VQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETI 321 (571)
Q Consensus 242 ~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l 321 (571)
T Consensus 157 -------------------------------------------------------------------------------- 156 (600)
T 2ywe_A 157 -------------------------------------------------------------------------------- 156 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecC
Q 008294 322 KKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP 401 (571)
Q Consensus 322 ~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~ 401 (571)
..+++++||++|.|+++|+++|.+++|+|.. ++++|+.++||+++.|+
T Consensus 157 ------------~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------------------~~~~pl~~lV~~~~~d~ 204 (600)
T 2ywe_A 157 ------------PEEAILASAKEGIGIEEILEAIVNRIPPPKG--------------------DPQKPLKALIFDSYYDP 204 (600)
T ss_dssp ------------GGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEET
T ss_pred ------------cccEEEEEeecCCCchHHHHHHHHhcccccc--------------------cccCCcceeEEEEeecc
Confidence 0137889999999999999999999999864 24789999999999999
Q ss_pred CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe-C---CCCccccceecCCCCc-
Q 008294 402 FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA-G---LKDTITGETLCDADHP- 476 (571)
Q Consensus 402 ~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~- 476 (571)
+.|.++++||++|+|++||.|++.++++.+++++++.+.+ +..+++++.|||++++. | ++++.+|||||..+.+
T Consensus 205 ~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~ 283 (600)
T 2ywe_A 205 YRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPT 283 (600)
T ss_dssp TTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCC
T ss_pred cceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCcc
Confidence 9999999999999999999999999999999999999886 47899999999999884 5 5578999999998877
Q ss_pred -ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHh
Q 008294 477 -ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREF 550 (571)
Q Consensus 477 -~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~ 550 (571)
.+++++.+++|+++++++|.+..|+++|.++|++|.+|||+|+++ +||+|++++| ||||||||+++||+++|
T Consensus 284 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~ 361 (600)
T 2ywe_A 284 KEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREY 361 (600)
T ss_dssp SSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999999999999999998 4688866666 99999999999999999
Q ss_pred CceEEEecCeEEEEEEEe
Q 008294 551 KKLMLVHPKSTIVKAFLK 568 (571)
Q Consensus 551 ~vev~~~~p~i~yke~~~ 568 (571)
|+++.+++|+|.|||+|+
T Consensus 362 ~~~v~~~~P~V~yreti~ 379 (600)
T 2ywe_A 362 GVKIITTAPNVIYRVKKK 379 (600)
T ss_dssp CCCEEECCCEECEEEEET
T ss_pred CceEEEEeeeEEEEEEec
Confidence 999999999999999997
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-62 Score=538.05 Aligned_cols=361 Identities=29% Similarity=0.423 Sum_probs=300.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----CeEEEEEcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----KHRINIIDT 162 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~liDT 162 (571)
+++|||+|+||+|+|||||+++|++.+|.+... ..+.+++|+++.|+++|+|+......+.|. ++.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~---~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR---EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc---cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 468999999999999999999999888876543 125688999999999999999999998885 389999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceee
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVV 242 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 242 (571)
|||.+|..++.++++.+|++|+|||+++|+..|+..+|..+...++|+++|+||+|+..++..++.+++.+.++...
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--- 155 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--- 155 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999988776666666666554310
Q ss_pred eccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHH
Q 008294 243 QLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIK 322 (571)
Q Consensus 243 ~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~ 322 (571)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCC
Q 008294 323 KLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (571)
Q Consensus 323 ~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 402 (571)
.+++++||++|.|+++|+++|.+++|+|.. +++.|+.++||+++.|++
T Consensus 156 ------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------------------~~~~p~~alI~d~~~d~~ 203 (599)
T 3cb4_D 156 ------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------------------DPEGPLQALIIDSWFDNY 203 (599)
T ss_dssp ------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEEETT
T ss_pred ------------ceEEEeecccCCCchhHHHHHhhcCCCccc--------------------cccCCceeeeeecccccc
Confidence 137889999999999999999999999864 257899999999999999
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE-eCC---CCccccceecCCCCc--
Q 008294 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL-AGL---KDTITGETLCDADHP-- 476 (571)
Q Consensus 403 ~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i-~gl---~~~~~Gdtl~~~~~~-- 476 (571)
+|+++++||++|+|++||.|++.++++.+++.++..+.+. ..+++++.|||++++ .|+ +++.+|||||+.+.+
T Consensus 204 ~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~ 282 (599)
T 3cb4_D 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAE 282 (599)
T ss_dssp TEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCS
T ss_pred ccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccc
Confidence 9999999999999999999999999999999999998865 789999999999988 455 468999999998877
Q ss_pred ccccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEE-----ecHHHHHHHHHHHHhHhC
Q 008294 477 ILLERMDFPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEG-----MGELHLEIIVDRLKREFK 551 (571)
Q Consensus 477 ~~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g-----~GelhLev~~~rL~~~~~ 551 (571)
.+++++.++.|+++++++|.+..|.++|.++|.+|.++||+|+++ ++++|+++.| ||||||||+++||+++||
T Consensus 283 ~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 283 KALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp SCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred cccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 678888999999999999999999999999999999999999998 5788866666 999999999999999999
Q ss_pred ceEEEecCeEEEEEEEec
Q 008294 552 KLMLVHPKSTIVKAFLKS 569 (571)
Q Consensus 552 vev~~~~p~i~yke~~~~ 569 (571)
+++.+++|+|.|||+|++
T Consensus 361 ~~~~~~~P~V~yreti~~ 378 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTS 378 (599)
T ss_dssp CCEEECCCEECEEEEESS
T ss_pred ceEEEEeeeEEEEEEecC
Confidence 999999999999999975
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=355.87 Aligned_cols=332 Identities=22% Similarity=0.254 Sum_probs=253.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
+.++|+++||+|||||||+++|+......... +|+|.......+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~------------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA------------------GGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC------------------CceecccCeEEEeechhhhhcccccccccc
Confidence 35799999999999999999998443211111 12333322222221
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
....++|||||||.+|...+.++++.+|++|+|+|+.+|++.|+.+.|..+...++|+++|+||+|+.......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~---- 141 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH---- 141 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC----
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc----
Confidence 22369999999999999998889999999999999999999999999999999999999999999986421000
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~ 310 (571)
.+ .++++.+.......++.+.+.+.+.++++++.+
T Consensus 142 ----------------------------------------~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g 176 (594)
T 1g7s_A 142 ----------------------------------------EG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG 176 (594)
T ss_dssp ----------------------------------------TT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------cC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 011222222234456677777777778888877
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCe
Q 008294 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPF 390 (571)
Q Consensus 311 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 390 (571)
++++.. .. ....+..+|++++||++|.|+++|+++|..++|+|.+. ...+++++|+
T Consensus 177 l~~e~~------~~---l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~---------------~l~~~~~~p~ 232 (594)
T 1g7s_A 177 FESERF------DR---VTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE---------------QLKIEEDSPA 232 (594)
T ss_dssp CEEEEG------GG---CSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG---------------GGEECTTSBC
T ss_pred cchHHH------HH---HHhccCcceEEEEeccCCCCchhHHHHHHhhccccchh---------------hhccccCCCc
Confidence 763211 00 11124678999999999999999999999998866531 1234568899
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCcee--ecceEEEec--------cCceeecCeec--CCCEEEE
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKE--RIGRLLEMH--------ANSREDVKVAL--AGDIIAL 458 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~--~i~~i~~~~--------g~~~~~v~~a~--aGdiv~i 458 (571)
.++|++++.+++.|.++++||++|+|++||.|++.+.+..+ +|++|+.+. +....++++|. +|+++++
T Consensus 233 ~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~ 312 (594)
T 1g7s_A 233 RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA 312 (594)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC
T ss_pred eeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE
Confidence 99999999999999999999999999999999998877644 999999873 56678999998 9999999
Q ss_pred eCCCCccccceecCCCCcc--------cccCCCCCCceEEEEEEeCCCCCHHHHHHHHHHH
Q 008294 459 AGLKDTITGETLCDADHPI--------LLERMDFPDPVIKVAIEPKTKADIDKMANGLIKL 511 (571)
Q Consensus 459 ~gl~~~~~Gdtl~~~~~~~--------~l~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kl 511 (571)
.||+++.+||+|+...++. .+..+.+..+.+.+.|++...++.+.|.++|+++
T Consensus 313 ~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 313 PGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp SSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 9999999999999876541 1333444567788999999999999999999997
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=319.38 Aligned_cols=279 Identities=19% Similarity=0.270 Sum_probs=218.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee------------e-eecCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG------------E-VHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g------------~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
+.+..++|+++||+|+|||||+++|++.++.+.... . -......+|..+.|+++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345678999999999999999999998887654421 0 011235688899999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCc-------hhHHHHHHHHHhcCCC-eEEEEecCCccccch
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~ 224 (571)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|.. .|+++++..+...++| +++|+||+|+...++
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999876 7999999999999999 789999999865432
Q ss_pred h-hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcC
Q 008294 225 F-RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELD 303 (571)
Q Consensus 225 ~-~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~ 303 (571)
. ...+++.+
T Consensus 173 ~~~~~~~i~~---------------------------------------------------------------------- 182 (439)
T 3j2k_7 173 SNERYEECKE---------------------------------------------------------------------- 182 (439)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 1 11111111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhh-cccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCC
Q 008294 304 DEAMESYLEGNEPDEETIKKLIRKG-TIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKG 370 (571)
Q Consensus 304 ~~l~e~~l~~~~~~~~~l~~~l~~~-~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~ 370 (571)
++...+... ......+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 183 ----------------~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~------ 239 (439)
T 3j2k_7 183 ----------------KLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNR------ 239 (439)
T ss_pred ----------------HHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCcc------
Confidence 000111000 0011246899999999999998 44444 44665532
Q ss_pred CCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCee
Q 008294 371 TDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVA 450 (571)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a 450 (571)
+.+.|+.+.|..++. +.|++..|||.+|+|++||.|...+.+...+|++|+.. .+++++|
T Consensus 240 --------------~~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~----~~~~~~a 299 (439)
T 3j2k_7 240 --------------SVDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD----DTETDFV 299 (439)
T ss_pred --------------CCCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEEC----CeEcCEe
Confidence 247899999999875 56999999999999999999999999988999998753 3789999
Q ss_pred cCCCEEEE--eCCC--CccccceecCCCCcc
Q 008294 451 LAGDIIAL--AGLK--DTITGETLCDADHPI 477 (571)
Q Consensus 451 ~aGdiv~i--~gl~--~~~~Gdtl~~~~~~~ 477 (571)
.|||+|++ .|++ ++..||+||+++++.
T Consensus 300 ~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 300 APGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred cCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 99999994 7776 488999999887653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=318.36 Aligned_cols=273 Identities=26% Similarity=0.402 Sum_probs=216.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee--eeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--EVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..++|+++||+|+|||||+++|+.... ..| ........+|..+.|+++|+|+......+.+.+..++|||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 4568999999999999999999985311 011 01112235788889999999999988888888899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeeec
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQL 244 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (571)
.+|...+..+++.+|++|+|+|+.++...|++++|..+...++| +++|+||+|+.... +.++.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~--~~~~~~~~----------- 152 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP--ELLDLVEM----------- 152 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH--HHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH--HHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999999 78899999987421 11111100
Q ss_pred cCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHH
Q 008294 245 PVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKL 324 (571)
Q Consensus 245 pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~ 324 (571)
++.+.
T Consensus 153 ---------------------------------------------------------------------------~~~~~ 157 (405)
T 2c78_A 153 ---------------------------------------------------------------------------EVRDL 157 (405)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01111
Q ss_pred HHhhcccCcceeeeeccccCCCC------------------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCC
Q 008294 325 IRKGTIAGSFVPVLCGSAFKNKG------------------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASD 386 (571)
Q Consensus 325 l~~~~~~~~~~Pv~~~Sa~~~~G------------------v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (571)
+.........+|++.+||++|.| +.+|++.|.+++|.|.. +.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~--------------------~~ 217 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR--------------------DV 217 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC--------------------CC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC--------------------CC
Confidence 11111111235889999999987 88999999999998854 13
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC---ceeecceEEEeccCceeecCeecCCCEEEEe--CC
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG---KKERIGRLLEMHANSREDVKVALAGDIIALA--GL 461 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl 461 (571)
++|+.+.|.+++.++++|++++|||++|+|++||.|.+.+.+ ...+|++|.... .++++|.|||++++. |+
T Consensus 218 ~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~ 293 (405)
T 2c78_A 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRGV 293 (405)
T ss_dssp SSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETT----EEESEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECC----cccCEEcCCCEEEEEECCC
Confidence 689999999999999999999999999999999999987766 578899886542 789999999999885 55
Q ss_pred --CCccccceecCCCC
Q 008294 462 --KDTITGETLCDADH 475 (571)
Q Consensus 462 --~~~~~Gdtl~~~~~ 475 (571)
+++..||+||+++.
T Consensus 294 ~~~~i~~G~~l~~~~~ 309 (405)
T 2c78_A 294 SREEVERGQVLAKPGS 309 (405)
T ss_dssp CTTTCCTTCEEESTTS
T ss_pred cHhhcCceEEEEcCCC
Confidence 56899999998764
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=319.57 Aligned_cols=272 Identities=26% Similarity=0.345 Sum_probs=213.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-eecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
...+|+++||+|+|||||+++|+..... .|. .....+.+|..+.|+++|+|+......+.+.++.++|||||||.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH
Confidence 3578999999999999999999853210 110 111123467777888999999998888888889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeeeccC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
|...+..+++.+|++|+|||+.+|...|++++|..+...++| +++|+||+|+.... +.++.+.
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~--~~~~~~~-------------- 142 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS--EMVELVE-------------- 142 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH--HHHHHHH--------------
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH--HHHHHHH--------------
Confidence 999999999999999999999999999999999999999999 57899999986421 1111110
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
+++.+.+.
T Consensus 143 ------------------------------------------------------------------------~~~~~~l~ 150 (397)
T 1d2e_A 143 ------------------------------------------------------------------------LEIRELLT 150 (397)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01111111
Q ss_pred hhcccCcceeeeeccccCCCC----------hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKG----------VQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFK 396 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~G----------v~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 396 (571)
........+|++++||++|.| +.+|+++|.+++|.|.. +.++|+.+.|++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~--------------------~~~~p~~~~v~~ 210 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR--------------------DLEKPFLLPVES 210 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC--------------------CTTSCCEEECCE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC--------------------CCCCcEEEEEEE
Confidence 111112246899999999764 89999999999998864 136899999999
Q ss_pred EeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEEe--CC--CCcccccee
Q 008294 397 IMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETL 470 (571)
Q Consensus 397 ~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl 470 (571)
++.++++|++++|||++|+|++||.|.+.+.+ ...+|++|.... .++++|.|||++++. |+ +++..||+|
T Consensus 211 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l 286 (397)
T 1d2e_A 211 VYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVM 286 (397)
T ss_dssp EEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred EEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEE
Confidence 99999999999999999999999999876654 677888886543 789999999999885 66 468899999
Q ss_pred cCCCC
Q 008294 471 CDADH 475 (571)
Q Consensus 471 ~~~~~ 475 (571)
|+++.
T Consensus 287 ~~~~~ 291 (397)
T 1d2e_A 287 AKPGS 291 (397)
T ss_dssp ESTTS
T ss_pred eCCCC
Confidence 98764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=320.86 Aligned_cols=278 Identities=26% Similarity=0.317 Sum_probs=207.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee--e-----eecC------cccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG--E-----VHEG------TATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g--~-----~~~g------~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+..++|+++||+|+|||||+++|++.++.+.... . ...| .+.+|..++|+++|+|+......+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 4578999999999999999999998765543211 0 0111 1457889999999999999988999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-eEEEEecCCccccchh-
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~- 225 (571)
+.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...++| +++|+||+|+...++.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 888999999999999985 7899999999763210
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 305 (571)
+.++.+.
T Consensus 164 ~~~~~~~------------------------------------------------------------------------- 170 (435)
T 1jny_A 164 KRYKEIV------------------------------------------------------------------------- 170 (435)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------HHHHHHHHhCCCCCCCCCCCCCCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------PLLDAVVDYLPSPLDLPAMKGTDP 373 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------~Lld~i~~~lP~p~~~~~~~~~~~ 373 (571)
+++.+.+.........+|++.+||++|.|+. .|+++|.. +|+|...
T Consensus 171 -------------~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~-------- 228 (435)
T 1jny_A 171 -------------DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP-------- 228 (435)
T ss_dssp -------------HHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG--------
T ss_pred -------------HHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC--------
Confidence 0111111111111113578999999999986 68888755 4545421
Q ss_pred CCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCC
Q 008294 374 ENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAG 453 (571)
Q Consensus 374 ~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aG 453 (571)
.+.|+.+.|..++..++.|++++|||++|+|++||.|++.+.+...+|++|... ..++++|.||
T Consensus 229 ------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG 292 (435)
T 1jny_A 229 ------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPG 292 (435)
T ss_dssp ------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTT
T ss_pred ------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCC
Confidence 257888889999999999999999999999999999999998999999999653 3789999999
Q ss_pred CEEEE--eCC--CCccccceecCCCCc
Q 008294 454 DIIAL--AGL--KDTITGETLCDADHP 476 (571)
Q Consensus 454 div~i--~gl--~~~~~Gdtl~~~~~~ 476 (571)
|+|++ .|+ +++.+||+||+++.+
T Consensus 293 ~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 293 DNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp CEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred CEEEEEEecCCHHHcCCccEecCCCCC
Confidence 99998 354 568999999987644
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=325.99 Aligned_cols=276 Identities=21% Similarity=0.244 Sum_probs=185.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee-------eeee------cCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------GEVH------EGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~-------g~~~------~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
..+..++|+++||+|+|||||+++|++.++.+... .... ....++|..+.|+++|+|+......+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 45668999999999999999999999876654422 0111 1245788899999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-eEEEEecCCccccch
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~ 224 (571)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..|+++++..+...++| +|+|+||+|+..++.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999854 89999999999999998 788999999876331
Q ss_pred ---hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 225 ---FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 225 ---~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
..+.+++.+.+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 222222222210
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH--------------HHHHHHHHhCCCCCCCCC
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ--------------PLLDAVVDYLPSPLDLPA 367 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~--------------~Lld~i~~~lP~p~~~~~ 367 (571)
........-+|++.+||++|.|+. .|++.|.+++|+..
T Consensus 348 ------------------------~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~---- 399 (592)
T 3mca_A 348 ------------------------KMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEK---- 399 (592)
T ss_dssp ------------------------TTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSC----
T ss_pred ------------------------HhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccc----
Confidence 000011123588999999999998 79999999887322
Q ss_pred CCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeec
Q 008294 368 MKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDV 447 (571)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v 447 (571)
+.+.|+.+.|..++.+ +.|++..|||.+|+|++||.|...+.+...+|++|... ..++
T Consensus 400 -----------------~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~----~~~~ 457 (592)
T 3mca_A 400 -----------------PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN----SDPS 457 (592)
T ss_dssp -----------------TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS----SSCS
T ss_pred -----------------cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc----CccC
Confidence 1478999999999999 89999999999999999999999999988899999853 3789
Q ss_pred C-eecCCCEEEE--eCCC--CccccceecCCCCc
Q 008294 448 K-VALAGDIIAL--AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 448 ~-~a~aGdiv~i--~gl~--~~~~Gdtl~~~~~~ 476 (571)
+ +|.|||+|++ .|++ ++..||+||+++.+
T Consensus 458 ~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 458 STWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp CCEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred cceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9 9999999986 5765 48899999988764
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=305.69 Aligned_cols=281 Identities=20% Similarity=0.247 Sum_probs=204.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------ee-eecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+...+|+++|++|+|||||+++|++..+.+... |. -.....++|....|+++|+|+......+.+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 457899999999999999999999886654321 10 01224567888999999999999999999999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-eEEEEecCCccccchhh
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFR 226 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~ 226 (571)
+.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...+++ +++|+||+|+...+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~- 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ- 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH-
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH-
Confidence 9999999999999999999999999999999999988 678999999999988865 8899999998753211
Q ss_pred hHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHH
Q 008294 227 TRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEA 306 (571)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l 306 (571)
.++++.+
T Consensus 190 ~~~~i~~------------------------------------------------------------------------- 196 (483)
T 3p26_A 190 RFEEIKS------------------------------------------------------------------------- 196 (483)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------------HHHHHHHhCCC--CCCCC
Q 008294 307 MESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------------LLDAVVDYLPS--PLDLP 366 (571)
Q Consensus 307 ~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------------Lld~i~~~lP~--p~~~~ 366 (571)
++...+.........+|++.+||++|.|+++ +|+.+...+|. |..
T Consensus 197 -------------~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~-- 261 (483)
T 3p26_A 197 -------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI-- 261 (483)
T ss_dssp -------------HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC--
T ss_pred -------------HHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc--
Confidence 1111111111112246899999999999873 44445444544 322
Q ss_pred CCCCCCCCCccccccccCCCCCCeEEEEEEEeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEec---
Q 008294 367 AMKGTDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH--- 440 (571)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~---~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~--- 440 (571)
+.+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|++|....
T Consensus 262 ------------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~ 323 (483)
T 3p26_A 262 ------------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQG 323 (483)
T ss_dssp ------------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-
T ss_pred ------------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccc
Confidence 24789999999999876 489999999999999999999999999889999998763
Q ss_pred -cCceeecCeecCCCEEEE--eC--CCCccccceecCCCC
Q 008294 441 -ANSREDVKVALAGDIIAL--AG--LKDTITGETLCDADH 475 (571)
Q Consensus 441 -g~~~~~v~~a~aGdiv~i--~g--l~~~~~Gdtl~~~~~ 475 (571)
|..+.++++|.|||+|+| .+ .+++..||+||+++.
T Consensus 324 ~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 324 QSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred cccccccccEECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 445689999999999999 34 367899999998876
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=302.13 Aligned_cols=242 Identities=13% Similarity=0.077 Sum_probs=198.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++||+|+|||||+++|+ ++|+|+......+.++++.++|||||||.+|..
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~ 75 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLK 75 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHH
T ss_pred CEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHH
Confidence 499999999999999999994 368899988888999999999999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEe-cCCccccch-hhhHHHHHHHhCCcceeeeccCC
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVN-KMDRLGANF-FRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviN-K~D~~~~~~-~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
.+..+++.+|++|+||| .+|+..|+++++..+...++|. ++|+| |+|+ ..+. .++.+++++.+..
T Consensus 76 ~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~---------- 143 (370)
T 2elf_A 76 SLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG---------- 143 (370)
T ss_dssp HHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999999 9999999999999999999999 89999 9998 5321 2222333322211
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
.
T Consensus 144 ------------------------------------------------------------------~------------- 144 (370)
T 2elf_A 144 ------------------------------------------------------------------T------------- 144 (370)
T ss_dssp ------------------------------------------------------------------S-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred hcccCcceeeee--ccccC---CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCC
Q 008294 328 GTIAGSFVPVLC--GSAFK---NKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPF 402 (571)
Q Consensus 328 ~~~~~~~~Pv~~--~Sa~~---~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~ 402 (571)
....+|+++ +||++ |.|+++|++.|.+++|+|... .. .....|+.++|..++..++
T Consensus 145 ---~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~-----------~~-----~~~~~p~r~~v~~vf~~~~ 205 (370)
T 2elf_A 145 ---VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAE-----------NA-----ELNSLPARIFIDHAFNVTG 205 (370)
T ss_dssp ---TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHH-----------HH-----HGGGSCCEEEEEEEECCC-
T ss_pred ---CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccC-----------Cc-----ccccccccccceeEEEcCC
Confidence 012368999 99999 999999999999998876210 00 0024567788888888899
Q ss_pred CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe--CC--CCccccceecC
Q 008294 403 VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGETLCD 472 (571)
Q Consensus 403 ~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl~~ 472 (571)
+|++++|||++|+|++||.|++.+.+...+|++|... + +++++|.|||+|++. |+ +++.+||+||+
T Consensus 206 ~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~---~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 206 KGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH-D---VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp --CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEET-T---EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEEC-C---CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999999999999999999999999999999998653 2 889999999999995 54 46899999997
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=308.77 Aligned_cols=277 Identities=22% Similarity=0.308 Sum_probs=184.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 154 (571)
+..++|+++||+|+|||||+++|++.+|..... |.. ....+.+|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 557899999999999999999999887765321 110 1123567888999999999999988898999
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-eEEEEecCCccccchh-
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGANFF- 225 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~- 225 (571)
..++|||||||.+|...+..+++.+|++|+|||+.+|. ..|+++++..+...++| +++|+||+|+...++.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 99999999999999999999999999999999999986 37999999999999998 8899999999653211
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 305 (571)
+.++.+.+
T Consensus 201 ~~~~~i~~------------------------------------------------------------------------ 208 (467)
T 1r5b_A 201 ERYKECVD------------------------------------------------------------------------ 208 (467)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhh-ccc-CcceeeeeccccCCCChHH--------------HHHHHHHhCCCCCCCCCCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKG-TIA-GSFVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDLPAMK 369 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~-~~~-~~~~Pv~~~Sa~~~~Gv~~--------------Lld~i~~~lP~p~~~~~~~ 369 (571)
++...+... ... ..-+|++.+||++|.|+.+ |++.| +.+|.|..
T Consensus 209 --------------e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~----- 268 (467)
T 1r5b_A 209 --------------KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLER----- 268 (467)
T ss_dssp --------------HHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHH-----
T ss_pred --------------HHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcC-----
Confidence 011111110 000 1135889999999999875 55555 44665532
Q ss_pred CCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCe
Q 008294 370 GTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKV 449 (571)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 449 (571)
+.++|+.+.|..++.+ .|+++.|||.+|+|++||.|...+.+...+|++|+.. ...++++
T Consensus 269 ---------------~~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~ 328 (467)
T 1r5b_A 269 ---------------KVNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISS 328 (467)
T ss_dssp ---------------HHTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESE
T ss_pred ---------------CCCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeE
Confidence 1368999999998764 6899999999999999999999888888889888653 2478999
Q ss_pred ecCCCEEEE--eC-CCCccccceecCCCCc
Q 008294 450 ALAGDIIAL--AG-LKDTITGETLCDADHP 476 (571)
Q Consensus 450 a~aGdiv~i--~g-l~~~~~Gdtl~~~~~~ 476 (571)
|.|||+|++ .| .+++..||+||+++++
T Consensus 329 a~aG~~v~i~l~g~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 329 SICGDQVRLRVRGDDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EETTCEEEEEEESCCTTCCTTCEEECSSSC
T ss_pred EcCCCEEEEEEeccHhhCCceEEEeCCCCC
Confidence 999999999 56 5679999999987654
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=323.89 Aligned_cols=276 Identities=24% Similarity=0.336 Sum_probs=203.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-eecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
..+...+|+++||+|+|||||+++|+.... ..|. .....+.+|..+.|+++|+|+......+.+.+..++||||||
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEECSSCEEEEEECCC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 345678999999999999999999985321 0110 001112567788899999999999888888899999999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHHHHHhCCcceeee
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQ 243 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 243 (571)
|.+|...+..+++.+|++|+|||+.+|...|+++++..+...++| +++|+||+|+.... +.++.+.+
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~--e~le~i~e---------- 436 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE--ELLELVEM---------- 436 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH--HHHHHHHH----------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch--hhHHHHHH----------
Confidence 999999999999999999999999999999999999999999999 67899999987421 11111110
Q ss_pred ccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHH
Q 008294 244 LPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKK 323 (571)
Q Consensus 244 ~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~ 323 (571)
++.+
T Consensus 437 ----------------------------------------------------------------------------Ei~e 440 (1289)
T 3avx_A 437 ----------------------------------------------------------------------------EVRE 440 (1289)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHhhcccCcceeeeeccccCC--------CChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEE
Q 008294 324 LIRKGTIAGSFVPVLCGSAFKN--------KGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAF 395 (571)
Q Consensus 324 ~l~~~~~~~~~~Pv~~~Sa~~~--------~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 395 (571)
.+.........+|++.+||++| .|+.+|++.|.+++|.|.. +.++|+.+.|.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r--------------------~~d~Pfr~pId 500 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER--------------------AIDKPFLLPIE 500 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC--------------------GGGSCCEEECC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc--------------------ccccceeeecc
Confidence 1111111123468999999999 5799999999999998754 13689999999
Q ss_pred EEeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEEe--CC--CCccccce
Q 008294 396 KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIALA--GL--KDTITGET 469 (571)
Q Consensus 396 k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdt 469 (571)
.++.++++|++++|||++|+|++||.|...+.+ ...+|++|... ..++++|.|||+|++. |+ +++..||+
T Consensus 501 ~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdV 576 (1289)
T 3avx_A 501 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQV 576 (1289)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred ccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccE
Confidence 999999999999999999999999999987766 57789888543 2789999999999884 66 45889999
Q ss_pred ecCCCCc
Q 008294 470 LCDADHP 476 (571)
Q Consensus 470 l~~~~~~ 476 (571)
|++++.+
T Consensus 577 L~~~~~~ 583 (1289)
T 3avx_A 577 LAKPGTI 583 (1289)
T ss_dssp EESTTSC
T ss_pred EecCCCC
Confidence 9987643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=297.95 Aligned_cols=278 Identities=22% Similarity=0.227 Sum_probs=208.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee--ee-----eecCc--------ccccchhhhhhhceeEeeceEEEe
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI--GE-----VHEGT--------ATMDWMEQEQERGITITSAATTTY 151 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~--g~-----~~~g~--------~~~d~~~~e~~~g~t~~~~~~~~~ 151 (571)
.+..++|+++||+|+|||||+++|++..+.+... .. ...|+ ..+|..+.|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999999876543221 00 01122 346788899999999999988898
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHH
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~ 230 (571)
+.+..++|||||||.+|...+..+++.+|++|+|||+.+|...|+.+++..+...++| +++|+||+|+...+.+. +++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~-~~~ 179 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV-FES 179 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH-HHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH-HHH
Confidence 8999999999999999999999999999999999999999999999999999888886 78899999987532111 111
Q ss_pred HHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESY 310 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~ 310 (571)
+.+
T Consensus 180 i~~----------------------------------------------------------------------------- 182 (434)
T 1zun_B 180 IKA----------------------------------------------------------------------------- 182 (434)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred hcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH------------HHHHHHHhCCCCCCCCCCCCCCCCCccc
Q 008294 311 LEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP------------LLDAVVDYLPSPLDLPAMKGTDPENPEA 378 (571)
Q Consensus 311 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~ 378 (571)
++.+.+.........+|++.+||++|.|+++ |++.| +.+|.|..
T Consensus 183 ---------~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l-~~i~~~~~-------------- 238 (434)
T 1zun_B 183 ---------DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL-ETVEIASD-------------- 238 (434)
T ss_dssp ---------HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH-HHSCCTTC--------------
T ss_pred ---------HHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHH-hcCCCccc--------------
Confidence 0001111100001236889999999999986 55544 45665543
Q ss_pred cccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE
Q 008294 379 TLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL 458 (571)
Q Consensus 379 ~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i 458 (571)
+.+.|+.+.|..++...+.|+...|||.+|+|++||.|...+.++..+|++|.... .++++|.|||++++
T Consensus 239 ------~~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~ 308 (434)
T 1zun_B 239 ------RNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTL 308 (434)
T ss_dssp ------CCSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEE
T ss_pred ------CCCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEE
Confidence 13678999998888776778888999999999999999999988888999998765 57999999999999
Q ss_pred eCCC--CccccceecCCCCc
Q 008294 459 AGLK--DTITGETLCDADHP 476 (571)
Q Consensus 459 ~gl~--~~~~Gdtl~~~~~~ 476 (571)
...+ ++..||+||.++.+
T Consensus 309 ~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 309 TMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp EESSCCCCCTTCEEEETTSC
T ss_pred EeCCccccCCccEEECCCCC
Confidence 6543 47899999987665
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=297.29 Aligned_cols=259 Identities=23% Similarity=0.343 Sum_probs=197.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN------------- 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~------------- 153 (571)
.+..++|+++||+|+|||||+++|+ |. ..+..+.|.++|+|+......+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~---g~------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT---GV------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH---TC------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh---CC------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 3557899999999999999999996 21 2355667888999998776654431
Q ss_pred ----------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCccc
Q 008294 154 ----------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLG 221 (571)
Q Consensus 154 ----------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~ 221 (571)
...++|||||||.+|...+.+++..+|++|+|||+.+|. ..|+.+++..+...++ |+++|+||+|+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 178999999999999999999999999999999999998 8999999998887776 6788899999876
Q ss_pred cch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHh
Q 008294 222 ANF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIV 300 (571)
Q Consensus 222 ~~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 300 (571)
.+. .+.++++++
T Consensus 152 ~~~~~~~~~~i~~------------------------------------------------------------------- 164 (410)
T 1kk1_A 152 KEKALENYRQIKE------------------------------------------------------------------- 164 (410)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 431 111111111
Q ss_pred hcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccc
Q 008294 301 ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATL 380 (571)
Q Consensus 301 ~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 380 (571)
|+.+. ....+|++++||++|.|+++|+++|.+.+|.|..
T Consensus 165 ---------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~---------------- 203 (410)
T 1kk1_A 165 ---------FIEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPKR---------------- 203 (410)
T ss_dssp ---------HHTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC----------------
T ss_pred ---------HHHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc----------------
Confidence 11110 0123589999999999999999999999998854
Q ss_pred cccCCCCCCeEEEEEEEee--------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEec
Q 008294 381 ERAASDDEPFAGLAFKIMS--------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMH 440 (571)
Q Consensus 381 ~~~~~~~~p~~~~V~k~~~--------d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~ 440 (571)
+.+.|+.+.|.+.+. ++++|.+++|||++|+|++||.|.+.+.++ ..+|.+|..
T Consensus 204 ----~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-- 277 (410)
T 1kk1_A 204 ----DPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-- 277 (410)
T ss_dssp ----CTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--
T ss_pred ----ccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE--
Confidence 136788899988763 456899999999999999999999866432 345555553
Q ss_pred cCceeecCeecCCCEEEEe-CC------CCccccceecCCCCc
Q 008294 441 ANSREDVKVALAGDIIALA-GL------KDTITGETLCDADHP 476 (571)
Q Consensus 441 g~~~~~v~~a~aGdiv~i~-gl------~~~~~Gdtl~~~~~~ 476 (571)
...++++|.|||++++. ++ .++..|++||.++.+
T Consensus 278 --~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~ 318 (410)
T 1kk1_A 278 --GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL 318 (410)
T ss_dssp --TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCS
T ss_pred --CCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCC
Confidence 24789999999998884 33 246789999987643
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=301.06 Aligned_cols=272 Identities=25% Similarity=0.293 Sum_probs=212.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------eee-ecCcccccchhhhhhhceeEeeceEEEeecCe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GEV-HEGTATMDWMEQEQERGITITSAATTTYWNKH 155 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~~-~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 155 (571)
...+|+++||+|+|||||+++|++..+.+... |.- .....++|..+.|+++|+|+......+.+.++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999999775543321 110 01113467888999999999999999999999
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCch-------hHHHHHHHHHhcCCC-eEEEEecCCccccch---
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEP-------QSETVWRQADKYGVP-RICFVNKMDRLGANF--- 224 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~-------~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~--- 224 (571)
.++|||||||.+|...+..+++.+|++|+|||+.+|... |+++++..+...++| +++|+||+|+...+.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999987655 899999999889997 788999999874221
Q ss_pred hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCH
Q 008294 225 FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDD 304 (571)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~ 304 (571)
..+.+++++
T Consensus 166 ~~i~~~~~~----------------------------------------------------------------------- 174 (458)
T 1f60_A 166 QEIVKETSN----------------------------------------------------------------------- 174 (458)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChH------------------------HHHHHHHHhCC
Q 008294 305 EAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQ------------------------PLLDAVVDYLP 360 (571)
Q Consensus 305 ~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~------------------------~Lld~i~~~lP 360 (571)
.+.........+|++.+||++|.|+. .|+++|.. +|
T Consensus 175 -------------------~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~ 234 (458)
T 1f60_A 175 -------------------FIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IE 234 (458)
T ss_dssp -------------------HHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SC
T ss_pred -------------------HHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cC
Confidence 11111001112578888999999975 47777654 45
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEec
Q 008294 361 SPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH 440 (571)
Q Consensus 361 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~ 440 (571)
.|.. ..+.|+.+.|..++.+++.|+++.|||.+|+++.||.|...+.+...+|.+|...
T Consensus 235 ~p~~--------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~- 293 (458)
T 1f60_A 235 QPSR--------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH- 293 (458)
T ss_dssp CCCC--------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-
T ss_pred CCcc--------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-
Confidence 4432 1478999999999999999999999999999999999999888888899998753
Q ss_pred cCceeecCeecCCCEEEE--eCC--CCccccceecCCCC
Q 008294 441 ANSREDVKVALAGDIIAL--AGL--KDTITGETLCDADH 475 (571)
Q Consensus 441 g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~~ 475 (571)
..++++|.|||+++| .|+ +++..|++|+.++.
T Consensus 294 ---~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 294 ---HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp ---TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred ---CeEEEEEcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 268999999999988 466 46899999998764
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=310.37 Aligned_cols=287 Identities=20% Similarity=0.243 Sum_probs=217.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee------------ee-eecCcccccchhhhhhhceeEeeceEEEeec
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI------------GE-VHEGTATMDWMEQEQERGITITSAATTTYWN 153 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~------------g~-~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~ 153 (571)
.+...+|+++|++|+|||||+++|++..+.+... |. -.....++|....|+.+|+|+......+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3456799999999999999999999665544321 10 0122456788889999999999999999999
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-eEEEEecCCccccchh
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVP-RICFVNKMDRLGANFF 225 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~ 225 (571)
++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...++| +++|+||+|+...+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 99999999999999999999999999999999999986 578999999999999987 7888999998753211
Q ss_pred hhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHH
Q 008294 226 RTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDE 305 (571)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 305 (571)
.++++.+
T Consensus 324 -~~~ei~~------------------------------------------------------------------------ 330 (611)
T 3izq_1 324 -RFEEIKS------------------------------------------------------------------------ 330 (611)
T ss_dssp -HHHHHHH------------------------------------------------------------------------
T ss_pred -HHHHHHH------------------------------------------------------------------------
Confidence 1111110
Q ss_pred HHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHH---------------HHHHHHHhCCCCCCCCCCCC
Q 008294 306 AMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQP---------------LLDAVVDYLPSPLDLPAMKG 370 (571)
Q Consensus 306 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~---------------Lld~i~~~lP~p~~~~~~~~ 370 (571)
++...+.........+|++.+||++|.|+.+ |++.|....+.+....+
T Consensus 331 --------------~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p--- 393 (611)
T 3izq_1 331 --------------KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENE--- 393 (611)
T ss_dssp --------------HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSS---
T ss_pred --------------HHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCc---
Confidence 1111111111112246889999999999974 44444433221111000
Q ss_pred CCCCCccccccccCCCCCCeEEEEEEEeecC---CCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEec----cCc
Q 008294 371 TDPENPEATLERAASDDEPFAGLAFKIMSDP---FVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMH----ANS 443 (571)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~---~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~----g~~ 443 (571)
....+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|++|.... |..
T Consensus 394 ------------~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~ 461 (611)
T 3izq_1 394 ------------GINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTN 461 (611)
T ss_dssp ------------CCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSS
T ss_pred ------------ccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEccccccccc
Confidence 0124789999999999877 589999999999999999999999999889999998663 556
Q ss_pred eeecCeecCCCEEEE--eC--CCCccccceecCCCC
Q 008294 444 REDVKVALAGDIIAL--AG--LKDTITGETLCDADH 475 (571)
Q Consensus 444 ~~~v~~a~aGdiv~i--~g--l~~~~~Gdtl~~~~~ 475 (571)
+.++++|.|||+|+| .+ .+++..||+||+++.
T Consensus 462 ~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 462 HEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp CCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred ccccceecCCCcceEEeeeccHhhCcceEEccCCCC
Confidence 789999999999999 44 467899999998876
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=287.09 Aligned_cols=258 Identities=22% Similarity=0.298 Sum_probs=187.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee---------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--------------- 152 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--------------- 152 (571)
+...+|+++||+|+|||||+++|. |. ..+....|.++|+|+........+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~---g~------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT---GV------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH---SC------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh---CC------------ccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 346899999999999999999996 21 234556788899998776554332
Q ss_pred c--------CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCcccc
Q 008294 153 N--------KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGA 222 (571)
Q Consensus 153 ~--------~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~ 222 (571)
. ...++|||||||.+|...+.+++..+|++|+|||+.+|. ..|+.+++..+...++ |+++|+||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 1 168999999999999999999999999999999999998 8999999988887776 68899999998764
Q ss_pred ch-hhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhh
Q 008294 223 NF-FRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVE 301 (571)
Q Consensus 223 ~~-~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 301 (571)
+. ...++++++.+
T Consensus 151 ~~~~~~~~~i~~~l------------------------------------------------------------------ 164 (408)
T 1s0u_A 151 KQAEENYEQIKEFV------------------------------------------------------------------ 164 (408)
T ss_dssp TTTTTHHHHHHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 31 11222222211
Q ss_pred cCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccc
Q 008294 302 LDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLE 381 (571)
Q Consensus 302 ~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 381 (571)
.+ . ....+|++.+||++|.|+++|+++|.+.+|.|..
T Consensus 165 ----------~~--------------~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~----------------- 201 (408)
T 1s0u_A 165 ----------KG--------------T--IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR----------------- 201 (408)
T ss_dssp ----------TT--------------S--TTTTCCEEEC------CHHHHHHHHHHHSCCCCC-----------------
T ss_pred ----------hh--------------c--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc-----------------
Confidence 10 0 0123588999999999999999999999987753
Q ss_pred ccCCCCCCeEEEEEEEeec--------CCCceEEEEEEecceeCCCCEEEeCCCC------------ceeecceEEEecc
Q 008294 382 RAASDDEPFAGLAFKIMSD--------PFVGSLTFVRVYAGTLSAGSYVLNANKG------------KKERIGRLLEMHA 441 (571)
Q Consensus 382 ~~~~~~~p~~~~V~k~~~d--------~~~G~i~~~rV~sG~l~~gd~v~~~~~~------------~~~~i~~i~~~~g 441 (571)
+.+.|+.+.|.+.|.. ++.|.++.|||.+|+|++||.|...+.+ ...+|++|+..
T Consensus 202 ---~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-- 276 (408)
T 1s0u_A 202 ---DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-- 276 (408)
T ss_dssp ---CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET--
T ss_pred ---cCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC--
Confidence 1367899999888743 3478899999999999999999876532 14678888753
Q ss_pred CceeecCeecCCCEEEEeC-----C--CCccccceecCCCCc
Q 008294 442 NSREDVKVALAGDIIALAG-----L--KDTITGETLCDADHP 476 (571)
Q Consensus 442 ~~~~~v~~a~aGdiv~i~g-----l--~~~~~Gdtl~~~~~~ 476 (571)
..++++|.|||++++.. + +++..|++||.++.+
T Consensus 277 --~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~ 316 (408)
T 1s0u_A 277 --NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTL 316 (408)
T ss_dssp --TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCS
T ss_pred --CEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCC
Confidence 37899999999999942 2 247789999987643
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=284.27 Aligned_cols=270 Identities=20% Similarity=0.258 Sum_probs=192.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----cCeEEEEEcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-----NKHRINIIDT 162 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~liDT 162 (571)
+...+|+++|++|+|||||+++|+...... ..+... .+.......+..++.+.......+.+ ....++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAE--TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEE--EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccc--cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 446799999999999999999997321111 001100 00000011112233332222111111 2378999999
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCccccc-hhhhHHHHHHHhCCcc
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN-FFRTRDMIVTNLGAKP 239 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~ 239 (571)
|||.+|...+..+++.+|++|+|+|+.++. ..|+.+++..+...++ |+++|+||+|+...+ ..+..+++++.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l---- 158 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT---- 158 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH----
Confidence 999999999999999999999999999998 8999999999888776 889999999987643 112222222111
Q ss_pred eeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHH
Q 008294 240 LVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEE 319 (571)
Q Consensus 240 ~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~ 319 (571)
.+
T Consensus 159 ------------------------------------------------------------------------~~------ 160 (403)
T 3sjy_A 159 ------------------------------------------------------------------------KG------ 160 (403)
T ss_dssp ------------------------------------------------------------------------TT------
T ss_pred ------------------------------------------------------------------------Hh------
Confidence 00
Q ss_pred HHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEee
Q 008294 320 TIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMS 399 (571)
Q Consensus 320 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 399 (571)
.....+|++.+||++|.|+++|+++|.+.+|.|.. +.+.|+.+.|.+.+.
T Consensus 161 ----------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~--------------------~~~~~~~~~v~~~~~ 210 (403)
T 3sjy_A 161 ----------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR--------------------DLSQKPVMLVIRSFD 210 (403)
T ss_dssp ----------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------------------CTTSCCEEEEEEEEC
T ss_pred ----------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC--------------------CCCCCcEEEEEEEEe
Confidence 01123589999999999999999999999988754 136789999998875
Q ss_pred --------cCCCceEEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEeccCceeecCeecCCCEEEEe
Q 008294 400 --------DPFVGSLTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSREDVKVALAGDIIALA 459 (571)
Q Consensus 400 --------d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~ 459 (571)
++++|.+++|||.+|++++||.|.+.+.++ ..+|++|... ..++++|.|||+|++.
T Consensus 211 v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 211 VNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIG 286 (403)
T ss_dssp CCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEE
T ss_pred ecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEE
Confidence 444899999999999999999999866543 3578888753 3889999999999983
Q ss_pred -----CC--CCccccceecCCCCc
Q 008294 460 -----GL--KDTITGETLCDADHP 476 (571)
Q Consensus 460 -----gl--~~~~~Gdtl~~~~~~ 476 (571)
++ +++..|++||.++.+
T Consensus 287 l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 287 TYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp ESSCHHHHGGGTTTTCEEEETTCC
T ss_pred eccccccchhhhccccEEeCCCCC
Confidence 22 357789999987654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-32 Score=296.58 Aligned_cols=263 Identities=22% Similarity=0.297 Sum_probs=195.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
-+..+|+++||+|+|||||+++|+ +.. ....+|..+.|+++|+|+......+.++++.++|||||||.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~---~~~--------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~ 85 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLT---EIA--------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD 85 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHH---TTC----------------------------CCCEEEETTEEEEECCCSSHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH---CCC--------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHH
Confidence 346899999999999999999996 211 113456677899999999999888888999999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc-hhhhHHHHHHHhCCcceeeeccC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN-FFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
|...+..+++.+|++|+|||+.+|+..|+.+++..+...++|.++|+||+|+...+ .+.+.+++++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~------------- 152 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKS------------- 152 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHH-------------
Confidence 99999999999999999999999999999999999999999999999999987532 1111111111
Q ss_pred CCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHH
Q 008294 247 GAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIR 326 (571)
Q Consensus 247 ~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~ 326 (571)
.+.
T Consensus 153 -----------------------------------------------------------------------------~l~ 155 (482)
T 1wb1_A 153 -----------------------------------------------------------------------------ILQ 155 (482)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHh
Confidence 111
Q ss_pred hhcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceE
Q 008294 327 KGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL 406 (571)
Q Consensus 327 ~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i 406 (571)
.. ......|++.+||++|.|+++|+++|.+.+|.|.... +.++|+.+.|...+..++.|++
T Consensus 156 ~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~------------------~~~~~~~~~v~~v~~~~g~G~v 216 (482)
T 1wb1_A 156 ST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR------------------NTESYFKMPLDHAFPIKGAGTV 216 (482)
T ss_dssp HS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC------------------CSSSCCBCBCSCEECCSSCCCE
T ss_pred hh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc------------------cccccccccceeEEEecCCceE
Confidence 10 0001257899999999999999999999887552100 1356788888888888999999
Q ss_pred EEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--Ccccccee-cCCC
Q 008294 407 TFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK--DTITGETL-CDAD 474 (571)
Q Consensus 407 ~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl-~~~~ 474 (571)
+.|+|.+|++++||.|...+.+...+|+.|... ..++++|.|||.+++ .|++ ++..||+| +.++
T Consensus 217 ~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~ 285 (482)
T 1wb1_A 217 VTGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDT 285 (482)
T ss_dssp ECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTC
T ss_pred EEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCCC
Confidence 999999999999999999888878888888643 377999999999988 4764 47899999 5543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-34 Score=305.24 Aligned_cols=303 Identities=23% Similarity=0.250 Sum_probs=229.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++||+|+|||||+++|+.... . ....+|+|++.....+.+++..++|||||||.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--------~----------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--------A----------SGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--------S----------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--------c----------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 3568999999999999999999973211 0 011257788777777778888999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
|...+.++++.+|++|+|||+.+|..+|+.++|..+...++|+++|+||+|+..++.+++.+++.+
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~-------------- 129 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ-------------- 129 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCC--------------
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999976543221110000
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
.+ +..+
T Consensus 130 -----------------------~~-------------------------------------------~~~~-------- 135 (501)
T 1zo1_I 130 -----------------------YG-------------------------------------------ILPE-------- 135 (501)
T ss_dssp -----------------------CC-------------------------------------------CCTT--------
T ss_pred -----------------------hh-------------------------------------------hhHH--------
Confidence 00 0000
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEE
Q 008294 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (571)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~ 407 (571)
..+..+|++++||++|.|+++|+++|......+. ...+++.|+.+.|++.+.+++.|.++
T Consensus 136 --~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~------------------~~~~~~~~~~~~V~e~~~d~g~G~v~ 195 (501)
T 1zo1_I 136 --EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLE------------------LKAVRKGMASGAVIESFLDKGRGPVA 195 (501)
T ss_dssp --CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCST------------------TTSCCCSBCEEEEEEEEECSSSSEEE
T ss_pred --HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhc------------------cccccccccccceEEEEEeCCcEEEE
Confidence 0012368999999999999999999975421111 11235788999999999999999999
Q ss_pred EEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCcc---------
Q 008294 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHPI--------- 477 (571)
Q Consensus 408 ~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~~--------- 477 (571)
+++|++|+|++||.|.+.+. ..+|..++..+ ..++++|.||+.+.+.|++++ ..||+++...++-
T Consensus 196 ~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~~~~---g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r 270 (501)
T 1zo1_I 196 TVLVREGTLHKGDIVLCGFE--YGRVRAMRNEL---GQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYR 270 (501)
T ss_dssp EEEEEESBCCTTCEEEEEBS--SCEEEEECCTT---TTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSCBT
T ss_pred EEEEEeeEEecCCEEEEccc--eeEEEEEEecC---CCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHHHH
Confidence 99999999999999987542 23455444333 367999999999999999884 7899997443221
Q ss_pred ---------------cccCCC--C---CCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEE
Q 008294 478 ---------------LLERMD--F---PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFS 521 (571)
Q Consensus 478 ---------------~l~~~~--~---~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~ 521 (571)
.+..+. + ..+.+.+.|++..++..+.|.++|.+|..++..+.+-
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 271 QGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII 334 (501)
T ss_dssp TCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC
T ss_pred HHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE
Confidence 122211 1 3456888899999999999999999998877766553
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-33 Score=299.35 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=202.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~ 167 (571)
+.++|+++||+|+|||||+++|..... .....+|+|.+.....+.+ ++..++|||||||.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~------------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV------------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH------------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 457899999999999999999973221 1112346676666666655 567899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCC
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
|...+.++++.+|++|+|+|+.+|..+|+.++|..+...++|+++|+||+|+..++..+..+++.+. +.
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~---------- 133 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DV---------- 133 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TS----------
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hh----------
Confidence 9999999999999999999999999999999999999999999999999999765433322222210 00
Q ss_pred CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHh
Q 008294 248 AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRK 327 (571)
Q Consensus 248 ~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~ 327 (571)
+.
T Consensus 134 --------------------------------------------------------------~~---------------- 135 (537)
T 3izy_P 134 --------------------------------------------------------------VC---------------- 135 (537)
T ss_dssp --------------------------------------------------------------CC----------------
T ss_pred --------------------------------------------------------------hH----------------
Confidence 00
Q ss_pred hcccCcceeeeeccccCCCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccccccCCCCCCeEEEEEEEeecCCCceEE
Q 008294 328 GTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLT 407 (571)
Q Consensus 328 ~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~ 407 (571)
...+..+|++++||++|.|+++|+++|...++.+.. ..+++.|+.+.|++.+.+++.|+++
T Consensus 136 -e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~------------------~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 136 -EDYGGDVQAVHVSALTGENMMALAEATIALAEMLEL------------------KADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp -CCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCC------------------CCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred -HhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccc------------------cCCCCCCcceeEEEEEEeCCCceEE
Confidence 001223689999999999999999999988764422 1235789999999999999999999
Q ss_pred EEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCCc-cccceecCCCCc
Q 008294 408 FVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDT-ITGETLCDADHP 476 (571)
Q Consensus 408 ~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~ 476 (571)
.++|.+|+|++||.|.... ...+|+.++..+| .++++|.||++|+|.|++++ ..||+|+...++
T Consensus 197 ~g~V~~G~l~~Gd~v~~g~--~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 197 TAIIQRGTLRKGSILVAGK--SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEEEEECCSSEEEECCSS--CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EEEEecCEEEcCCEEEeCC--ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 9999999999999985432 3357777765554 67999999999999999985 789999977554
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=203.19 Aligned_cols=109 Identities=18% Similarity=0.355 Sum_probs=79.4
Q ss_pred EEeCCCCccccceecCCCCcccccCCCCCCceEEEEEEeCCC----CC-----HHHHHHHHHHHHhhCCeeEEEEeCCCC
Q 008294 457 ALAGLKDTITGETLCDADHPILLERMDFPDPVIKVAIEPKTK----AD-----IDKMANGLIKLAQEDPSFHFSRDEEIN 527 (571)
Q Consensus 457 ~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~Pv~~~avep~~~----~d-----~~kl~~~L~kl~~eDpsl~~~~~~etg 527 (571)
+++|++++.+|||||+...+.+++++.+++|+++++|+|++. .| ..+|.++|.+|+++||+|+++.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 578999999999999999899999999999999999999987 55 789999999999999999999999999
Q ss_pred eEEEEEecHHHHHHHHHHHHhHhCceEEEecCeEEEEEE
Q 008294 528 QTVIEGMGELHLEIIVDRLKREFKKLMLVHPKSTIVKAF 566 (571)
Q Consensus 528 e~il~g~GelhLev~~~rL~~~~~vev~~~~p~i~yke~ 566 (571)
+++|+|||||||||+++||+++ |+++.+++|+|+|||+
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE 119 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE
Confidence 9999999999999999999999 9999999999999996
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=184.17 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=92.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGH 165 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~ 165 (571)
+...-.|+++|++|+|||||+|+|+... ....+ ...++|.......+.++ +.+++||||||+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~---~~i~s--------------~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~ 69 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK---VSIIS--------------PKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC---CSCCC--------------SSSCCCCSCEEEEEEETTTEEEEEEECCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC---ccccC--------------CCCCceeeEEEEEEecCCCCeEEEEECcCC
Confidence 3445689999999999999999997221 11111 12345665555666677 899999999999
Q ss_pred CCcH----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHhcCCCeEEEEecCCcc
Q 008294 166 VDFT----------LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 166 ~~f~----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~~~~p~ivviNK~D~~ 220 (571)
.++. ..+..+++.+|++++|+|+.++...++... +..+...++|+++|+||+|+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 7654 667788999999999999999999999888 677778899999999999986
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-20 Score=185.08 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=90.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
+...|+++|++|+|||||+|+|+..... ..+.. .++|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~---ivs~~--------------~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA---PISPR--------------PQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS---CCCSS--------------SCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee---eecCC--------------CCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 4568999999999999999999832211 11111 12233333334556789999999999987
Q ss_pred -------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 168 -------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++++|+|++++....+..++..+... ++|+++|+||+|+...
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 567778889999999999999999888888888888877 8999999999998653
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-20 Score=196.24 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=90.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCe-EEEEEcCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKH-RINIIDTPG 164 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~liDTPG 164 (571)
+....++|+++|+.|+|||||+|+|+.... ...+...|+|.......+.+.+. .++||||||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~-----------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG 92 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV-----------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETTTEEEEEEECSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC-----------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcC
Confidence 445678999999999999999999962111 11233467788888777877665 899999999
Q ss_pred CCCcH-------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 165 HVDFT-------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 165 ~~~f~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
+.+|. ..+..+++.+|++|+|+|+ +...++...+..+...++|+++|+||+|+...+
T Consensus 93 ~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 93 LDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp TTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 98873 3366788899999999999 778899999999999999999999999987653
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=162.70 Aligned_cols=116 Identities=20% Similarity=0.204 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC--
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD-- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~-- 167 (571)
+++|+++|..|+|||||+++|+...... .+...++|.......+...+..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-----------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-----------------ccCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 3689999999999999999997322110 111234455555566677888999999999987
Q ss_pred -----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+...+...++.+|++++|+|+.++...........+...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 4555667889999999999999988887777777787789999999999998653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=176.55 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|++|+|||||+|+|. |.....+. ..|+|+......+.+++..++||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~---g~~~~v~~---------------~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT---NANQRVGN---------------WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TTSEEEEE---------------CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHH---CCCCCccC---------------CCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 689999999999999999996 43322222 146777777778888899999999999988754
Q ss_pred ----------HHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 171 ----------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ----------~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....++ ..+|++|+|+|+++ ......++.++...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp -----CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred cccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 233344 67999999999987 44555667778888999999999999764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=168.63 Aligned_cols=118 Identities=33% Similarity=0.407 Sum_probs=92.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++.++|+++|.+|+|||||+++|+..... . . ...+++.......+.+++..+++|||||+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-~---------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT--E-Q---------------EAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS--C-S---------------SCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc--c-C---------------CCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 45679999999999999999999732111 0 0 0112333333445566788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
|......++..+|++++|+|+.++...++.+.+..+...++|+++|+||+|+...+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC
Confidence 87777777888999999999999888888888888888899999999999987643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=173.65 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-ecCeEEEEEcCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY-WNKHRINIIDTP 163 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~liDTP 163 (571)
.+..+.++|+++|++|+|||||+|+|+.... ... .....|+|.......+. +++..++|||||
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~--~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 87 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKR--LAF--------------ASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSS--SSC--------------TTCCCCSCCCEEEEEESCTTSCSEEEEECC
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCc--cee--------------ecCCCCcccceEEEEecCCCCCcEEEEcCC
Confidence 3445678999999999999999999962210 000 01113445555445554 567899999999
Q ss_pred CCCCc----------HHHHHHHHHh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 164 GHVDF----------TLEVERALRV---LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 164 G~~~f----------~~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|+.+. ...+..+++. +|++++|+|+.++.......++..+...++|+++|+||+|+...
T Consensus 88 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh
Confidence 97542 3344455555 78899999999998888888888898899999999999998753
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=163.69 Aligned_cols=113 Identities=18% Similarity=0.075 Sum_probs=78.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+.. ... ... .|+......+.+++..+.+|||||+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~---~~~----------------~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN--EVV---HTS----------------PTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT--SCE---EEE----------------CCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCC---cCc----------------CCCccceEEEEECCEEEEEEECCCCHh
Confidence 34679999999999999999999722 111 100 022222334556789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 988888899999999999999886443332 22333332 5899999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=161.53 Aligned_cols=114 Identities=19% Similarity=0.057 Sum_probs=82.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+.... .. + ..|+......+.+++..+.+|||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~------------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEV--VT------------T-------IPTIGFNVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSC--CC------------C-------CCCSSEEEEEEEETTEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--CC------------c-------CCcCccceEEEEECCEEEEEEECCCChh
Confidence 4467999999999999999999973211 00 0 0122222344566789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHH-HHh---cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~---~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++++|+|+.+....... ..+.. +.. .++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 888888889999999999999876443322 22232 222 58999999999998653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=156.45 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=79.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|++|+|||||+++|+...... +. -|+......+.+++..+++|||||+.+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--------------~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--------------TI-------PTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--------------CC-------CCSSCCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--------------cc-------CcCceeEEEEEECCEEEEEEEcCCChhhHHH
Confidence 79999999999999999997432110 00 0222223345567899999999999999988
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+..+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 88899999999999999875333222 22233322 3789999999999865
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=163.16 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=83.4
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+..+.++|+++|++|+|||||+++|+.... ... .....|.|.......+ +..+.+|||||
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~t~~~~~~~~---~~~~~l~Dt~G 78 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKN--LAR--------------TSSKPGKTQTLNFYII---NDELHFVDVPG 78 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEEEE---TTTEEEEECCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCC--ccc--------------cCCCCCceeeEEEEEE---CCcEEEEECCC
Confidence 3445678999999999999999999972210 000 0111233443333222 34799999999
Q ss_pred C----------CCcHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 165 H----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~----------~~f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+ ..|...+...++.+ |++++|+|+.++.......++..+...++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp BCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4 34444556666666 9999999999988888888888888889999999999998654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-20 Score=184.76 Aligned_cols=203 Identities=13% Similarity=0.112 Sum_probs=124.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+..+|+++|++|+|||||+|+|+......... ...++|.......+.+.+..++||||||+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL----------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT----------------TSCCCCCSCEEEEEEETTEEEEEEECCGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCCceeeeeEEEEEEeCCCEEEEEECcCCC
Confidence 3456899999999999999999998332211100 011245666666777889999999999998
Q ss_pred CcH-----------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCCeEEEEe-cCCccccchhhh--
Q 008294 167 DFT-----------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVN-KMDRLGANFFRT-- 227 (571)
Q Consensus 167 ~f~-----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviN-K~D~~~~~~~~~-- 227 (571)
++. ..+..+++.+|++|+|+|+.. +..+....+..+... +.|.++|+| |+|+...+..+.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~ 161 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH 161 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH
Confidence 762 223336678999999999985 777777777777765 678888888 999986544332
Q ss_pred ------HHHHHHHhCCcceeee-ccC------CCCCCcceeeeccccee-EEecCCCCCceeeeecccH--HHHHHHHHH
Q 008294 228 ------RDMIVTNLGAKPLVVQ-LPV------GAEDNFKGVVDLVKMKA-IIWSGEELGAKFAYEDIPA--NLQKMAQEY 291 (571)
Q Consensus 228 ------~~~i~~~l~~~~~~~~-~pi------~~~~~~~~~id~~~~~~-~~~~~~~~g~~~~~~~~~~--~~~~~~~~~ 291 (571)
++++.+.++....++. +|+ +...-|..+++.+.++. ++|..+ ...+.|. ......+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG------LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH------HHHHC-------------
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH------HHHHHHHHHhhhhhHHHH
Confidence 2224444443211110 332 22334555556655544 444321 1223344 445566778
Q ss_pred HHHHHHHHhhcCHHHHHHHhc
Q 008294 292 RSQMIETIVELDDEAMESYLE 312 (571)
Q Consensus 292 ~~~l~e~~~~~~~~l~e~~l~ 312 (571)
+..+.|.+++.+++++++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999965
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=175.93 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+.+..+.||||||+.++.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~---g~~~~v~~---------------~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT---GSRQRVGN---------------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TTCEEEEE---------------CTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 4689999999999999999996 33222222 24667777777788888999999999998875
Q ss_pred H---------HH-HHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 L---------EV-ERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~---------~~-~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. .+ ... .+.+|++|+|+|+++ .........++...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 1 11 122 268999999999987 34455566777788999999999999754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-19 Score=179.45 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=85.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC-C
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-D 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~-~ 167 (571)
+..+|+++|++|+|||||+|+|+ |......+.. .++|.......+.+++.++++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~---g~~~~i~s~~--------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL---GQKISITSRK--------------AQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH---TCSEEECCCC--------------SSCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH---CCCccccCCC--------------CCcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 35689999999999999999997 2221111111 1233333333456788999999999997 3
Q ss_pred cH--------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 FT--------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~--------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. ..+..+++.+|++++|+|+.+ +..++..+++.+...+.|.++|+||+|+..
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 22 223456678899999999988 888998888888888999999999999865
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=160.61 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=82.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+....... + ..|+......+.+.+..+.||||||+.+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED-------------M-------IPTVGFNMRKITKGNVTIKLWDIGGQPR 79 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-------------C-------CCCCSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc-------------c-------CCCCceeEEEEEeCCEEEEEEECCCCHh
Confidence 4568999999999999999999973221100 0 0122222334567889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 988888899999999999999875333322 22333322 58999999999998653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=188.13 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=89.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+..++|+++|++|+|||||+|+|+.. .... .....|+|.+.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~---~~~~--------------~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE---ERVI--------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS---TTEE--------------EC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC---Ccee--------------ecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 45689999999999999999999721 1110 112346787777778888899999999999843
Q ss_pred ----------cHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 ----------FTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 ----------f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
|... ...+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 3322 346889999999999999999999998888888899999999999998653
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=164.79 Aligned_cols=118 Identities=22% Similarity=0.155 Sum_probs=83.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+....++|+++|+.|+|||||+++|+.... ... ++ ..|+......+.+.+..++||||||+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~---~~~---------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQS---SSK---------HI-------TATVGYNVETFEKGRVAFTVFDMGGA 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------CC-------CCCSSEEEEEEEETTEEEEEEEECCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCC---ccc---------cc-------ccccceeEEEEEeCCEEEEEEECCCC
Confidence 445678999999999999999999962111 000 00 01222233345678899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHhc-----------CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY-----------GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~-----------~~p~ivviNK~D~~~~ 222 (571)
.+|...+..+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99988888889999999999999986543333 333334333 8999999999998654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=159.77 Aligned_cols=114 Identities=20% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|++|+|||||+++|+. +.... + ..|+......+.+++..+++|||||+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL--GEIVT------------T-------IPTIGFNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS--SCCEE------------E-------EEETTEEEEEEEETTEEEEEEECC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh--CCccc------------c-------CCcCceeEEEEEECCEEEEEEECCCCHh
Confidence 4567899999999999999999961 11110 0 0122222344566889999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 988888899999999999999876433322 22233322 37999999999998653
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=163.06 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=81.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|..|+|||||+++|+.... .... ...|+......+.+++..+.||||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---~~~~----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNA---QSQN----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGG---CCSS----------------CCCCSSEEEEEEECSSCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC---CCCC----------------cCCccceeEEEEEECCEEEEEEECCCCHH
Confidence 4467999999999999999999962210 0000 01122333345566789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHH-HHh-----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQ-ADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~-----~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++|+|+|+.+....... ..+.. +.. .++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 988888899999999999999875322221 22233 332 4789999999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=156.48 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|. +.... .. ....|.+ ...+.+++..+.+|||||+.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~---~~~~~--~~------------~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLA---SEDIS--HI------------TPTQGFN----IKSVQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHC---CSCCE--EE------------EEETTEE----EEEEEETTEEEEEEECSSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHh---cCCCC--cc------------cCcCCeE----EEEEEECCEEEEEEECCCCHH
Confidence 446899999999999999999996 21110 00 0011222 234455789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 998889999999999999999875433322 2223222 257899999999998654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=158.83 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=81.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS----------------CCCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcC----------------CCCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 34579999999999999999999832211000 00112223222233322356899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHhc---CCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADKY---GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 988889999999999999999875443332 233344433 788999999999854
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=160.18 Aligned_cols=115 Identities=17% Similarity=0.053 Sum_probs=81.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+..+..+|+++|..|+|||||+++|+... .. .. ..|+......+.+++..+.+|||||+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~---~~----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~ 75 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNE--VV---HT----------------SPTIGSNVEEIVINNTRFLMWDIGGQ 75 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTS--CE---EE----------------ECCSSSSCEEEEETTEEEEEEEESSS
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCC--CC---cc----------------CCcCceeeEEEEECCEEEEEEECCCC
Confidence 33456899999999999999999997321 10 00 00111222345557899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 99888888889999999999999886443332 2333333 26899999999999865
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=160.93 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=85.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|+|||||+++|+....... .....|.+.......+......+.||||||+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN----------------ISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT----------------CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC----------------cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 4568999999999999999999973221100 001134455444444445667899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|...+...++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 998889999999999999999876543333333 33333 3789999999999854
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=169.18 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=86.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+.+..+.||||||+.+|
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~---g~~~~~~~---------------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT---GTKQYVAN---------------WPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH---TTCEEEEE---------------CTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45789999999999999999996 32222222 1467887777788888899999999999887
Q ss_pred HH------HHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 TL------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~------~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.. .....+ ..+|++++|+|+++. ......+.++...++|+++|+||+|+..
T Consensus 66 ~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 66 GYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp CSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 43 123333 478999999999873 3344566777788999999999999754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=184.70 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=92.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC--
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG-- 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG-- 164 (571)
.....+|+++|++|+|||||+|+|+.. ..... ....|+|.......+.+++..++||||||
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~---~~~~~--------------~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~ 254 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGE---ERVIV--------------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTS---TTEEE--------------CC------CTTSEEEEETTEEEEETTGGGTT
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCC---Ccccc--------------CCCCCeEEEEEEEEEEECCceEEEEECCCCC
Confidence 346789999999999999999999722 11111 11246677777777888899999999999
Q ss_pred --------CCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 165 --------HVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 --------~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++.|... ...+++.+|++|+|+|+.+++..++..++..+...++|+++|+||+|+...
T Consensus 255 ~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 255 KKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp TBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred cCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4555444 345889999999999999999999999999999999999999999998653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=157.25 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=83.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.++..+|+++|+.|+|||||+++|+........ ....|.+.......+......+.||||||+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC----------------PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------------TTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 345789999999999999999999843221100 0011333333333333345689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+|...+..+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999875443333332 2232 25789999999999854
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-18 Score=155.36 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=82.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+....... .+...|.+.......+...+..+++|||||+.+|.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF----------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 57899999999999999999983211100 00112334444444444446789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 888999999999999999987543333322 233333 3688999999999854
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=154.56 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=77.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|. +.....+ ...|+|+......+.+++..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT---GENVYIG---------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH---CCSSSCC--------------------CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCeecc---------------CCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 4689999999999999999996 2111111 112445555555566778899999999998874
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ------~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....+++ .+|++++|+|+.+. ......+..+...++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 65 ANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 22334444 78999999999762 2233344556667899999999999753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-18 Score=155.75 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=79.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC---eEEEEEcCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK---HRINIIDTPG 164 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~liDTPG 164 (571)
.+..+|+++|++|+|||||+++|+..... .+....+..+.....+.+.+ ..+++|||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G 65 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG------------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT------------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC
Confidence 34678999999999999999999732110 01111122222223344443 7899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-----cCCC-eEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-----YGVP-RICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p-~ivviNK~D~~~ 221 (571)
+.+|...+..+++.+|++++|+|+++.........| ..+.. .+.| +++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp CCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 999988889999999999999999875443322222 33333 2667 688999999864
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=171.31 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.++|+++|++|+|||||+|+|+ |.....+. ..|+|+......+.+++..+++|||||+.+|.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~---g~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT---GLRQHVGN---------------WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH---TTCEEEEE---------------CTTSSCEEEEEEEEETTEEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHh---CCCcccCC---------------CCCeEEEeeEEEEEECCceEEEEeCCCccccc
Confidence 5799999999999999999996 43333332 24667777778888899999999999999875
Q ss_pred H------HHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CCeEEEEecCCccc
Q 008294 170 L------EVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYG-VPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~------~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p~ivviNK~D~~~ 221 (571)
. ....++ ..+|++++|+|++++ ......+..+...+ +|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 65 AHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp SSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred cCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 4 233333 468999999999874 45556667777778 99999999999754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=164.09 Aligned_cols=128 Identities=20% Similarity=0.127 Sum_probs=82.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceE-EEeecCeEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~i~liDTPG~~ 166 (571)
+...+|+++|++|+|||||++.+..... ....+ +......+.....|.+...... .+......++||||||+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKG-----EMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBC-----CCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc-ccccc-----cccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 3467999999999999999976642111 00000 0000000000011122211111 222345689999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh---------cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~---------~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++|+|+|++++...+..+.+..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999997655555554443332 5899999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-18 Score=182.61 Aligned_cols=113 Identities=22% Similarity=0.286 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~--- 167 (571)
++|+++|.+|+|||||+|+|+... .. ..+...|+|.+.....+.|++..+++|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~---~~--------------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK---KA--------------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEETTEEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---Cc--------------eecCCCCCccceeeEEEEECCeEEEEEECCCcccccc
Confidence 589999999999999999997211 10 0122457888888888899999999999999875
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+...+..+++.+|++++|+|+.++....+..+...++..++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 24556778999999999999999999888888888888899999999999974
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=160.64 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.++..+|+++|++|+|||||+++|+..... .. .....|.+.......+......++||||||+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--EN--------------ISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCC--cc--------------CCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 345689999999999999999999732210 00 00112333333333333345679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+|...+..+++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred chhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 9999999999999999999999875444333333 23332 3799999999999854
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-18 Score=155.07 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=82.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+....... .....|.+.......+......+.+|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN----------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh
Confidence 357899999999999999999973321100 0111244444444444334578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 88888999999999999999875444433333 33433 3678899999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=160.28 Aligned_cols=120 Identities=22% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.+...+|+++|..|+|||||+++|+..... . . .....|.+.......+......+.||||||+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~--~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFC--E--A------------CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCC--c--C------------CCCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 4455789999999999999999999621100 0 0 0011122333322222222368999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+...++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999999999999999999999875544433333 23332 4789999999999854
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=154.39 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=81.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|+.|+|||||+++|+........ ....|.+.......+......+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 66 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK----------------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEECCCChhhh
Confidence 368999999999999999999833211000 0112333333333333345689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
..+...++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 8899999999999999999875443333322 23322 47899999999998653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=160.86 Aligned_cols=118 Identities=18% Similarity=0.087 Sum_probs=82.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+........ ....|++.......+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAF----------------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------------CCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 45689999999999999999999732110000 00123344333333333457899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999899999999999999999875433333323 33333 4789999999999854
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=161.45 Aligned_cols=119 Identities=15% Similarity=0.029 Sum_probs=83.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|+++|.+|+|||||+++|+........ ....|.+.......+......++||||||+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF----------------VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----------------CCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCc----------------CCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 345789999999999999999999733211000 0012334443333343445789999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+|...+..+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp SSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 9988888889999999999999875433322 22334443 3789999999999854
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-18 Score=157.77 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=83.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+....++|+++|..|+|||||+++|+... ... .. ...|.|..... ...+..+.+|||||+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-~~--------------~~~~~t~~~~~---~~~~~~~~i~Dt~G~ 78 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRK--IAF-VS--------------KTPGKTRSINF---YLVNSKYYFVDLPGY 78 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CSC-CC--------------SSCCCCCCEEE---EEETTTEEEEECCCB
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCc--ccc-cc--------------CCCCCccCeEE---EEECCcEEEEECCCC
Confidence 44556799999999999999999997322 110 00 01233333222 223457899999994
Q ss_pred ----------CCcHHHHHHHHHhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 ----------VDFTLEVERALRVL---DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ----------~~f~~~~~~~l~~~---D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..|.......++.+ |++++|+|+..+.......++..+...++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 79 GYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred ccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 33444445555555 9999999999988888888888888889999999999998753
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-18 Score=159.09 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|..... .. + ..|+......+.+++..+++|||||+.++.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~--~~------------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL--AT------------L-------QPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC--CC------------C-------CCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--Cc------------c-------ccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 45899999999999999999973211 10 0 112222334566678999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 77777889999999999998765433322 223332 25799999999999865
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=158.42 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=80.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTP 163 (571)
..+...+|+++|.+|+|||||+++|+.... .. +....++.......+.+++ ..+.|||||
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 86 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAF--SE----------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTA 86 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEETTEEEEEEEECCT
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCC--CC----------------CCCCCcceEEEEEEEEECCEEEEEEEEECC
Confidence 445678999999999999999999973211 00 0001111222223334444 689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|+.+|...+..+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 87 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 99999999999999999999999998643322222 2233333 4689999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=159.14 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+....... ...+++.......+.+++ ..+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC------------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC------------------CCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4578999999999999999999983221100 011223333334444444 67999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 99998899999999999999999874432222222 33333 37899999999998643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=160.51 Aligned_cols=118 Identities=18% Similarity=0.064 Sum_probs=84.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|+.|+|||||+++|+.......... ..|++.......+......+.||||||+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVS----------------TVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEE----------------EETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCC----------------CeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 3468999999999999999999984332111110 113344444444455678899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999999999999999999999864332222 22333333 4789999999999854
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-18 Score=153.29 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+........ ..+ .+ +.......+......+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~-----------~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----DPT-----------IE-DFYRKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----CTT-----------CC-EEEEEEEEETTEEEEEEEEECCCTTCCH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC-----CCC-----------cc-eeEEEEEEECCEEEEEEEEECCCchhhH
Confidence 468999999999999999999832211000 000 01 1111122222234569999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHH----HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+....... ..+..+ ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 9999999999999999999874332222 122222 234899999999999854
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=151.53 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+.......... ..+.+.. ...........+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----------------t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP----------------TVEDTYR-QVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC----------------CSCEEEE-EEEEETTEEEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----------------CccccEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 46899999999999999999973211000000 0011111 111222234679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 999999999999999999986432222 223333333 3799999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=156.24 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=74.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+........ .++. .+.......+......+.||||||+.+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t~------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----DPTI------------EDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----CTTC------------CEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCCc------------hheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 3568999999999999999999833211000 0000 0111111222223356888999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 88899999999999999999874333332222 2222 24799999999999864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=158.13 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=84.2
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++..+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------------CCCSSEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3456789999999999999999999843221100 001233343333334345678999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 999888899999999999999998754332222 2333333 3789999999999864
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=150.56 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+........ ..+ .+... .....+......+.+|||||+.+|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----~~t-----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY-----DPT-----------IEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC-----CCC-----------SEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCC-----------ccceE-EEEEEECCEEEEEEEEECCChHHHH
Confidence 468999999999999999999842110000 000 01111 1112222345689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+....... ..+..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 8899999999999999999864322221 1222222 34899999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=155.96 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=78.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+..+|+++|++|+|||||+++|+........ .. ..+... .....+......+.+|||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-----~~-----------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY-----DP-----------TIEDSY-LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----CT-----------TCCEEE-EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CC-----------Ccccee-EEEEEeCCcEEEEEEEECCCch
Confidence 345689999999999999999999832111000 00 011111 1122222233557789999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-----HHHHHHHhcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++++|+|+.+....... .+.......++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9988888999999999999999875322222 222223346899999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=154.85 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=79.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTP 163 (571)
+..+..+|+++|+.|+|||||+++|+....... ...+ .+.... ..+.++ ...+.|||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~t-----------~~~~~~---~~~~~~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-----YDPT-----------IEDSYT---KICSVDGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-----CCTT-----------CCEEEE---EEEEETTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc-----cCCC-----------cCceEE---EEEEECCEEEEEEEEECC
Confidence 345578999999999999999999984321100 0000 111111 223333 3678999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH----HHHHhcCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~----~~~~~~~~p~ivviNK~D~~~ 221 (571)
|+.+|.......++.+|++++|+|+.+....... ..+ ......++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999988888899999999999999874322222 112 222345889999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-18 Score=159.08 Aligned_cols=114 Identities=21% Similarity=0.153 Sum_probs=81.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+... ... + ..|+......+.+++..+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-----~~~---------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-----VDT---------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-----CSS---------C-------CCCSSEEEEEEEETTEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-----CCc---------c-------cccCccceEEEEECCEEEEEEECCCCHh
Confidence 346799999999999999999996211 000 0 0022222334555789999999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
|...+...++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 887778888999999999999876443332 23333332 47999999999998653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-18 Score=159.68 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=76.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|.. +... .+ ..|+......+.+++..+++|||||+.+|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD--DRLG------------QH-------VPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC--C-------------------------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc--CCCC------------cc-------CCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 346899999999999999999951 1100 00 01222233456667899999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++++|+|+++........ .+..+. ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 877778899999999999998754333222 223232 25799999999999865
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=156.24 Aligned_cols=118 Identities=17% Similarity=0.060 Sum_probs=80.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------Ce
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-----------KH 155 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-----------~~ 155 (571)
.++..+|+++|++|+|||||+++|+......... ...|.+... ...+... ..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 70 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI----------------TTVGIDFRE-KRVVYRANGPDGAVGRGQRI 70 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----------------CCCSEEEEE-EEEEECTTSCCCSSCCCEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc----------------cccceeeee-EEEEEecCCcccccccCcEE
Confidence 3457899999999999999999998322110000 001111110 1112222 46
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
.++||||||+.+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 8999999999999999999999999999999998754433322 2233332 5799999999999854
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=154.51 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|...... .. . ...|+|.......+.+++..+.+|||||+.++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~--~~-~--------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA--IV-T--------------DIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS--CC-C--------------SSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--ee-e--------------CCCCceeceeeEEEEECCeEEEEEECCCcccch
Confidence 357999999999999999999722110 00 0 012344444445566678889999999997642
Q ss_pred H--------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc---CCCeEEEEecCCcc
Q 008294 170 L--------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY---GVPRICFVNKMDRL 220 (571)
Q Consensus 170 ~--------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~~p~ivviNK~D~~ 220 (571)
. ....+++.+|++++|+|+++.........+..+... ++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1 123468899999999999887665555555544433 68999999999974
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=158.30 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=82.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.+...+|+++|++|+|||||+++|+.. ... .+...+++.......+.+++ ..+++|||||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~---~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 67 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADN---TFS---------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSC---C------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC---CCC---------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCC
Confidence 345789999999999999999999611 100 01112334444444455555 7899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
+.++......+++.+|++++|+|+.++........| ..+.. .++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp GGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 999888888889999999999999875443333322 23332 25899999999997643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=159.61 Aligned_cols=113 Identities=20% Similarity=0.135 Sum_probs=77.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+. +.. ... ..|+......+.+++..+.+|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~---~~~----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEV---VTT----------------KPTIGFNVETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEE---EEE----------------CSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCc---Ccc----------------CCcCccceEEEEECCEEEEEEECCCCHh
Confidence 4568999999999999999999951 111 000 0122222334556789999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++++|+|+.+....... ..+..+. ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 888788888999999999999876443332 2333333 35789999999999865
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=161.48 Aligned_cols=114 Identities=17% Similarity=0.078 Sum_probs=80.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|.. +... . +. .|+......+.+++..+++|||||+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~---~---------~~-------~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVV---T---------TV-------PTVGVNLETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCE---E---------EC-------SSTTCCEEEEEETTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCC---C---------cC-------CCCceEEEEEEECCEEEEEEECCCCHh
Confidence 3467899999999999999999951 1111 0 00 011222334556789999999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
+...+..+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 877777788899999999999876443322 22333322 47899999999998653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-18 Score=157.66 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=78.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..+..+|+++|.+|+|||||+++|+........ ....|.+.......+......++||||||+.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 345789999999999999999999732211000 0011222222222222234689999999999
Q ss_pred CcH-HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 167 DFT-LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~-~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+|. .....+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 887 6677889999999999999864332222222 2222 35799999999999854
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-18 Score=168.14 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|. |.....+. ..|+|+......+.+ +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~---g~~~~v~~---------------~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT---GHNQRVGN---------------WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH---CCCCCCCS---------------SSCCCCSCEEEECTT-CTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHH---CCCCcccC---------------CCCCcEEEEEEEEec-CCeEEEEECCCcCccC
Confidence 4689999999999999999996 32211111 136666665566655 7789999999998875
Q ss_pred ------HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 ------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ------~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....++. .+|++++|+|+++. ......+.++...++|+++|+||+|+..
T Consensus 64 ~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 64 PYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp CSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred CCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 23344555 59999999999762 3334445666778999999999999753
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=149.64 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+....... ...+ .+.+. .....+......+.+|||||+.++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~t-----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPT-----------KADSY-RKKVVLDGEEVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSC-----CCTT-----------CCEEE-EEEEEETTEEEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCC-----CCCC-----------cceEE-EEEEEECCEEEEEEEEECCCcchhH
Confidence 57899999999999999999983221000 0000 01111 1111222233689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 9999999999999999999864332222222 2222 23799999999999864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=153.64 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=78.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+.... .... . ...|.+.......+......+.+|||||+.+|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~----~----------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF--TKDY----K----------KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--CCCS----S----------CCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC--CCCC----C----------CceEEEEEEEEEEECCEEEEEEEEcCCCcHhH
Confidence 467899999999999999999973211 0000 0 00112222222222223468999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 88888899999999999999874332222222 22322 4899999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=153.50 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|+.|+|||||+++|+........ ...++.......+.+++ ..+.+|||||+.+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 478999999999999999999832211000 01122222223333333 6899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
|...+...++.+|++++|+|+.+........ .+..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 9888889999999999999998643322222 222222 24789999999999864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=152.54 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=79.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
....+|+++|++|+|||||+++|+...... +....++.......+.+++ ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT------------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 346799999999999999999997322110 0011122222223333444 58999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---h----cCCCeEEEEecCCcc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---K----YGVPRICFVNKMDRL 220 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~----~~~p~ivviNK~D~~ 220 (571)
.+|.......++.+|++++|+|+.+.........| ..+. . .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99998888899999999999999875433322222 2222 1 578999999999986
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=156.07 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
++..+|+++|++|+|||||+++|+........ ...++.......+..++ ..+.||||||+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 45789999999999999999999733211100 01122222223333444 68999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-H---HHHhcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-R---QADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~---~~~~~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| . .....++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999889999999999999999875443333323 2 22235789999999999854
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=160.55 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=80.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec----------Ce
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------KH 155 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~ 155 (571)
..++..+|+++|++|+|||||+++|+.... .. ... ...+.+.......+... ..
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--~~~------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--KFI------------TTVGIDFREKRVVYNAQGPNGSSGKAFKV 84 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--EEE------------EEEEEEEEEEEEEEEC-------CCEEEE
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--CCC------------CceeEEEEEEEEEECCccccccccCceeE
Confidence 345678999999999999999999972211 00 000 00111111112222222 57
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCCeEEEEecCCccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQ-ADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~----~~~p~ivviNK~D~~~ 221 (571)
.++||||||+.+|...+...++.+|++|+|+|+.+.........|.. +.. .++|+++|+||+|+..
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 89999999999999889999999999999999987544333333322 221 4789999999999854
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=154.37 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+...... .... ...+.+.......+......+++|||||+.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~~------------~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA---GTFI------------STVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC---CCCC------------CCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC---CCcC------------CceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456899999999999999999997432210 0000 0012222222222222235899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|...+..+++.+|++|+|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 98888889999999999999987543332222 233332 5789999999999864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=181.61 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC----
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV---- 166 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~---- 166 (571)
++|+++|++|+|||||+|+|+ |... ...+...|+|.+.....+.|.+..++||||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~---~~~~--------------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA---GERI--------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE---EEEC--------------C-----------CEEEECTTCSSCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCc--------------eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch
Confidence 689999999999999999995 2100 0122346788888888888889999999999986
Q ss_pred ----CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 167 ----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ----~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+...+..+++.+|++|+|+|+.++....+.++...++..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 4566778899999999999999999999888888888889999999999999754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-18 Score=154.55 Aligned_cols=118 Identities=18% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|++|+|||||+++|+......... ...|.+.......+......+.+|||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI----------------TTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC----------------CCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCC----------------CccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 345799999999999999999998332110000 0012222222222222346789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 888888888999999999999875433333322 2222 25789999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=154.85 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe---ecCeEEEEEc
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY---WNKHRINIID 161 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~i~liD 161 (571)
.+.++..+|+++|..|+|||||++++.. ..... ...+++......... .....++|||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D 75 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSPN----------------ETLFLESTNKIYKDDISNSSFVNFQIWD 75 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS---CCCGG----------------GGGGCCCCCSCEEEEECCTTSCCEEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh---cCCCc----------------ceeeeccccceeeeeccCCCeeEEEEEE
Confidence 3445678999999999999999998752 11100 111222222223322 3457899999
Q ss_pred CCCCCCcHHHH---HHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCCeEEEEecCCcccc
Q 008294 162 TPGHVDFTLEV---ERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 162 TPG~~~f~~~~---~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~~ 222 (571)
|||+.+|.... ..+++.+|++|+|+|+++........+...+.. .++|+++|+||+|+...
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 99999987776 789999999999999998743333333333332 38999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-18 Score=154.46 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=77.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
...+|+++|++|+|||||+++|+....... ...+++.......+.++ ...+.+|||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS------------------FITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------CCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 357899999999999999999973211000 01112222222233333 4679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHHh---cCCCeEEEEecCCcc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQADK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~~---~~~p~ivviNK~D~~ 220 (571)
++...+...++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 988888889999999999999987543322222 233333 378999999999983
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-17 Score=153.32 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTP 163 (571)
+..+..+|+++|++|+|||||+++|+........ ..+ .+.+. ...+.++ ...+.|||||
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t-----------~~~~~---~~~~~~~~~~~~~~l~Dt~ 70 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----EPT-----------KADSY---RKKVVLDGEEVQIDILDTA 70 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-----CTT-----------CCEEE---EEEEEETTEEEEEEEEECC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCc-----------cceEE---EEEEEECCEEEEEEEEcCC
Confidence 3445789999999999999999999833211000 000 11111 1222333 3589999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 71 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 71 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred ChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 9999999999999999999999999864332222222 22222 3799999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=157.16 Aligned_cols=118 Identities=15% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|+.|+|||||+++|+........ ....|.+.......+......++||||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 45689999999999999999999842211000 00112233332233322346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 8888888999999999999998744333322 2233333 3789999999999854
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-18 Score=156.92 Aligned_cols=116 Identities=17% Similarity=0.093 Sum_probs=60.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+..... .+...+++.......+.+++ ..++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN------------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC------------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 45689999999999999999999721110 01112223333333344444 78999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|.......++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 998887788889999999999998754333322 2233333 3789999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=152.09 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+ +...... ...++|.......+.+++..+++|||||+.+|
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~---~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT---GENVYIG---------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH---TTCEEEE---------------ECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCcccc---------------CCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 45799999999999999999997 2111111 11355666666667778899999999999987
Q ss_pred H------HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 T------LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~------~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
. .....+++ .+|++++|+|+.. .......+..+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 4 22334444 4899999999975 23334455666678899999999999754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=152.75 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=71.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
...+|+++|++|+|||||+++|+.... ... ....|.+.......+......+.+|||||+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQE---RDL--------------HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC----------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCC---ccc--------------cCccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence 457999999999999999999972111 000 01123344333333332345789999999988
Q ss_pred -cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHhc----CCCeEEEEecCCccc
Q 008294 168 -FTLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADKY----GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 -f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~----~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|+.+........ .+..+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 4444556678899999999998643333322 23334443 799999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=156.64 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+........ ....|.+.......+......+.||||||+.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL----------------AATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccC----------------CCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 3579999999999999999999743211000 011233444444444445578999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (571)
......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 88888999999999999999875433333333 33333 368999999999984
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-18 Score=158.53 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|++|+|||||+++|+........ .. ..+.+. .....+......+++|||||+.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~-----~~-----------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY-----DP-----------TIENTF-TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----CT-----------TCCEEE-EEEEEETTEEEEEEEEECCCCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----CC-----------CccccE-EEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999832211000 00 112222 12222222336789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++++|+|+.+.........| ..+...++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 877777788899999999999864332222222 222234799999999999854
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-18 Score=165.30 Aligned_cols=121 Identities=21% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
......+|+++|.+|+|||||+++|+..... .. .....|++.......+......++||||||+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~--~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE--KK--------------YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT--CE--------------EETTTTEEEEEEEEEETTEEEEEEEEEECSG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC--CC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCCh
Confidence 3445689999999999999999997622111 00 0112355666665555556788999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99888888899999999999999875444433333 22322 28999999999998653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=153.49 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPG 164 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG 164 (571)
++..+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.+|||||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY------------------KATIGADFLTKEVTVDGDKVATMQVWDTAG 67 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---------------------CCCSCEEEEECCSSSCCEEEEEECCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCccc------------------CCccceEEEEEEEEEcCCcEEEEEEEECCC
Confidence 45789999999999999999999842211000 0111111222223332 46899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-------cCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-------~~~p~ivviNK~D~~~ 221 (571)
+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 999988888889999999999999875433332222 22221 5789999999999854
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=153.26 Aligned_cols=117 Identities=15% Similarity=0.032 Sum_probs=78.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+......... .+ . +... .....+......+.+|||||+.+|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~-----~t-~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----PT-V----------FDNY-SANVMVDGKPVNLGLWDTAGQEDY 66 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC-----CC-S----------CCEE-EEEEEETTEEEEEEEECCCCSGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC-----Cc-c----------ccee-EEEEEECCEEEEEEEEECCCCHhH
Confidence 35689999999999999999997432110000 00 0 1111 111122223467889999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++++|+|+.+........ .+..+... ++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 877777889999999999998754444332 23344443 8999999999998653
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-17 Score=147.14 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|+.|+|||||+++|+........ ..+ .+... .....+......+.+|||||+.++..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~~~-----------~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-----DPT-----------IEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-----CTT-----------CCEEE-EEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-----CCc-----------cceEE-EEEEEECCEEEEEEEEECCCchhhhH
Confidence 58999999999999999999833211000 000 01111 11112222346689999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
....+++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 8999999999999999998643322222 2233322 2799999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-17 Score=149.67 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~ 166 (571)
+..+|+++|+.|+|||||+++|+....... ...+ .+.+. ...+... ...+.||||||+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t-----------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPT-----------KADSY---RKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----CCTT-----------CCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----CCCc-----------cceEE---EEEEEECCEEEEEEEEECCCCc
Confidence 467999999999999999999983221000 0000 01111 1122233 3579999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999999864332222222 2222 23799999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=151.18 Aligned_cols=116 Identities=14% Similarity=0.028 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|+...+.... . ...+.........+......+.+|||||+.++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--E--------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--c--------------CCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 568999999999999999999621111000 0 000111112222222234678899999999986
Q ss_pred H-HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 L-EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~-~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
. .....++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 6 455568889999999999874322222 22233322 2799999999999864
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=157.58 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=80.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.++..+|+++|.+|+|||||+++|+....... ....++.+.....+.+++ ..++||||||
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG------------------QGATIGVDFMIKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------CCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 35578999999999999999999973221100 001112222222333443 5899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+.+|......+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999998888899999999999999875433222222 2232 24789999999999854
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=153.15 Aligned_cols=64 Identities=25% Similarity=0.293 Sum_probs=52.0
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH-hcCCCeEEEEecCC
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD-KYGVPRICFVNKMD 218 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~-~~~~p~ivviNK~D 218 (571)
..+.||||||+.+|...+...++.+|++|+|+|+.++........| ..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999988899999999999999999886544443333 3333 35689999999999
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=149.80 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+++|. +...... ....|.+.. ....+......+.+|||||+.+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~---~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG---GVEDGPE--------------AEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC---CC------------------------CEEE-EEEEETTEEEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHc---CccccCC--------------CCccccceE-EEEEECCEEEEEEEEECCCCccch
Confidence 4589999999999999999995 2111100 111233332 122333345678999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 8888899999999999999864332222 22333333 3789999999999864
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=169.33 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=77.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+|+|++|+|||||+++|+. +... . . ..|+......+.+.+..++||||||+.+|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~--~~~~---~---------~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKL--GEIV---T---------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCS--SCCE---E---------E-------EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cceEEEECCCCccHHHHHHHHhC--CCCC---C---------c-------ccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 45899999999999999999951 1110 0 0 013334445567788999999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
.....+++.+|++|+|+|+++....... .....+.. .++|+++|+||+|+...
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 8899999999999999999865443322 22233333 28899999999998654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=157.12 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++++...... ++. ...|................+.||||+|+++|.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~-------------~~~---~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDN-------------TYQ---ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCC-------------CcC---CccceEEEEEEEEecceEEEEEEEECCCchhhh
Confidence 4689999999999999999998322110 000 011222222222233345678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++++|+|.++.........| ..+ ...++|+++|.||+|+..
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 9999999999999999999864443333222 222 234789999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=157.56 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=79.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.....+|+++|++|+|||||+++|+...... . ...+++.......+.+++ ..+.||||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNP----S--------------FITTIGIDFKIKTVDINGKKVKLQLWDTAG 78 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCC----S--------------SSCCCSCCEEEEEEEETTEEEEEEEECCTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCc----c--------------cCCcccceEEEEEEEECCEEEEEEEEeCCC
Confidence 3456899999999999999999997322100 0 001222222333344454 6899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCCeEEEEecCCcc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~ 220 (571)
+.+|...+..+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+.
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999888888899999999999999875432222 22233333 378999999999983
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=157.73 Aligned_cols=116 Identities=19% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY------------------ISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC------------------CCSSCCCEEEEEEEETTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCcccceeEEEEEEECCEEEEEEEEeCCCh
Confidence 45689999999999999999999732211000 0111222222233333 358999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99888888889999999999999875444433333 33332 4689999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-17 Score=152.36 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=77.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|++|+|||||+++|+.......... ..+.+.. ....+......+.||||||+.+|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~ 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP----------------TIEDTYR-QVISCDKSVCTLQITDTTGSHQF 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC----------------CCCEEEE-EEEEETTEEEEEEEEECCGGGSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC----------------cccccee-EEEEECCEEEEEEEEeCCChHHh
Confidence 457999999999999999999984211100000 0011111 11122223467999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
......+++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99899999999999999999864322221 22222222 3789999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=155.80 Aligned_cols=116 Identities=15% Similarity=0.015 Sum_probs=80.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~ 165 (571)
+...+|+++|+.|+|||||+++|+........ ..+ .+... ...+..+ ...+.||||||+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----~~t-----------~~~~~---~~~~~~~~~~~~~~i~D~~G~ 76 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY-----VPT-----------VFDHY---AVSVTVGGKQYLLGLYDTAGQ 76 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC-----CCS-----------SCCCE---EEEEESSSCEEEEEEECCCCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCc-----------cccee---EEEEEECCEEEEEEEEECCCC
Confidence 34679999999999999999999843211000 000 01111 1122333 378999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+.+........ .+..+... ++|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 999888888899999999999998754333332 33444444 8999999999998654
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=158.23 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=78.4
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+..+..+|+++|.+|+|||||+++|+......... . ..+.+. .....+......+.||||||
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----~-----------t~~~~~-~~~~~~~~~~~~~~l~Dt~G 81 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-----P-----------TVENTY-SKIVTLGKDEFHLHLVDTAG 81 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-----C-----------CSEEEE-EEEEC----CEEEEEEEECC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-----C-----------ccceEE-EEEEEECCEEEEEEEEECCC
Confidence 344567899999999999999999998322110000 0 011122 22233334568899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred ccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 999888888889999999999999864433333322 23322 3789999999999864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=155.63 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=83.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---CeEEEEEcCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN---KHRINIIDTPGH 165 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~liDTPG~ 165 (571)
+..+|+++|++|+|||||+++|+..... .. ..+.......+.++ +..++||||||+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DT-------------------QTSITDSSAIYKVNNNRGNSLTLIDLPGH 64 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CB-------------------CCCCSCEEEEEECSSTTCCEEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cc-------------------cCCcceeeEEEEecCCCccEEEEEECCCC
Confidence 3578999999999999999999843211 00 00111111223444 678999999999
Q ss_pred CCcHH-HHHHHHHhcCeEEEEEeCCCCCchhHHH---HHHHH-H-----hcCCCeEEEEecCCcccc-chhhhHHHHHHH
Q 008294 166 VDFTL-EVERALRVLDGAICLFDSVAGVEPQSET---VWRQA-D-----KYGVPRICFVNKMDRLGA-NFFRTRDMIVTN 234 (571)
Q Consensus 166 ~~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~~~---~~~~~-~-----~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~ 234 (571)
.+|.. .+..+++.+|++|+|+|+.+ ....... .|... . ..++|+++|+||+|+... ......+.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~ 143 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHH
Confidence 99887 56677899999999999976 2222222 22222 1 236899999999999764 345556666655
Q ss_pred hC
Q 008294 235 LG 236 (571)
Q Consensus 235 l~ 236 (571)
++
T Consensus 144 l~ 145 (214)
T 2fh5_B 144 LN 145 (214)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=158.13 Aligned_cols=117 Identities=19% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+......... ...|.+.......+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK----------------ATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC----------------CCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC----------------CcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 356899999999999999999998432111000 0012222222222222346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-------cCCCeEEEEecCCcc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-------~~~p~ivviNK~D~~ 220 (571)
|......+++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 877777888999999999999875433333222 22211 478999999999986
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=155.72 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=73.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+++|+......... .+. +.... ....+......+.+|||||+.+|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~-----~t~-----------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV-----PTV-----------FDNFS-ANVVVNGATVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CB-CCCC-------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cee-----------eeeEE-EEEEECCEEEEEEEEECCCChhh
Confidence 35789999999999999999998432110000 000 00000 00112223466789999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++++|+|+++........ .| ..+.. .++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 888888899999999999998754433332 23 33333 27999999999998653
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=152.37 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=78.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++|.+|+|||||+++|+.. ...... ..+.|.......+.+.+..+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~---~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA---NVDVQS---------------YSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT---CEEEEC---------------C-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC---CCccCC---------------CCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45689999999999999999999621 111100 123344444455566788999999999943
Q ss_pred c---------HHHHHHHHHhcCeEEEEEeCCCCCchh---HHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 168 F---------TLEVERALRVLDGAICLFDSVAGVEPQ---SETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f---------~~~~~~~l~~~D~~ilVvda~~g~~~~---~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
+ ...+...+..+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 1 112233467789999999998765432 23445555554 899999999999864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=169.82 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=86.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+|+|+ |....... ...|+|.+.....+.+++..+.+|||||+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~---g~~~~~v~--------------~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAIL---NKERALVS--------------PIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHH---TSTTEEEC--------------CCC------CCEEEEETTEEEEESSCSCC--
T ss_pred ccCceEEEECCCCCCHHHHHHHHh---CCcccccC--------------CCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 356899999999999999999997 32211111 1235676666677788899999999999854
Q ss_pred cHH------------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 FTL------------EVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~------------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+.. ....+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...
T Consensus 241 ~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 241 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp ---------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred ccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 322 2356788999999999999998888887788888889999999999998653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-17 Score=156.44 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=79.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe--ecCeEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY--WNKHRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~liDTPG~ 165 (571)
.+..+|+++|.+|+|||||+++|+......... +++.......+. .....++||||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------------------PTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC-------------------CCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC-------------------CeecceeEEEEEECCEEEEEEEEECCCc
Confidence 345799999999999999999998432211110 111111111222 23456779999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++++|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 999888888899999999999998765544432 33344444 8999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=155.75 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.++..+|+++|..|+|||||+++|+..... . +....++.......+..++ ..+.||||||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 83 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFK--Q----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEETTEEEEEEEECCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC--c----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCC
Confidence 355789999999999999999999722110 0 0001112222222333343 7899999999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
+.+|...+..+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred cHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 988877778889999999999999875433332222 2232 24789999999999854
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=149.90 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec--CeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--KHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~liDTPG~~~ 167 (571)
..+|+++|..|+|||||+++|+....... ..++ .+... ...+.++ ...+.||||||+.+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t-----------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-----YDPT-----------IEDSY---RKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSC-----CCTT-----------CCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccc-----cCCc-----------cceEE---EEEEEECCEEEEEEEEECCChHH
Confidence 46899999999999999999983221100 0000 01111 1122233 35699999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 988888999999999999999875443333322 22222 3799999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=176.73 Aligned_cols=114 Identities=25% Similarity=0.335 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC-----
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG----- 164 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG----- 164 (571)
.++|+++|++|+|||||+|+|+ |.. . .......|+|.......+.|.+..+++|||||
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~---~~~--~------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA---GER--I------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE---EEE--E------------C-----------CEEEECTTCSSCCEEECCCC-----
T ss_pred CCEEEEECCCCCcHHHHHHHHh---CCC--C------------cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc
Confidence 5799999999999999999995 210 0 01223458888888888888999999999999
Q ss_pred ---CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 165 ---HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ---~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
+..+...+..+++.+|++|+|+|+.+++...+.++++.++..++|+++|+||+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 45566778889999999999999999999999999999999999999999999975
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=157.73 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|++|+|||||+++|+........ ....|.+... ..+.+++ ..+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFAT--RTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEE--EEEEETTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEE--EEEEECCEEEEEEEEECCCc
Confidence 45789999999999999999999732211000 0011222222 2333444 68999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99988788889999999999999875544433333 33333 3789999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=148.39 Aligned_cols=116 Identities=20% Similarity=0.108 Sum_probs=76.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+........ ..+ .+... .....+......+.||||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----~~t-----------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----DPT-----------LESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----CTT-----------CCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----CCC-----------CCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 34579999999999999999999843211000 000 11111 11122222347799999999998
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHH----HhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|+++....... ..+..+ ...++|+++|+||+|+..
T Consensus 89 -~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred -ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 67788889999999999999863222111 112222 235899999999999864
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=155.45 Aligned_cols=118 Identities=14% Similarity=0.033 Sum_probs=78.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+++|+........ ..+ .+.... ....+......+.||||||+.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-----~~t-----------~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPT-----------VFDNFS-ANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----CCS-----------SCCCEE-EEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCc-----------cceeEE-EEEEECCEEEEEEEEECCCcHH
Confidence 45689999999999999999999832211000 000 011111 1112222346899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 988888889999999999999875443332 223344443 8999999999998653
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-17 Score=151.94 Aligned_cols=117 Identities=14% Similarity=0.031 Sum_probs=79.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+......... .+ .+.+... ...+......++||||||+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~-----~t-----------~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV-----PT-----------VFENFSH-VMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEEEE-EEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccC-----Ce-----------eeeeeEE-EEEECCEEEEEEEEECCCcHH
Confidence 456799999999999999999998432110000 00 1111111 122222345679999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHhc--CCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~~--~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+.+....... ..| ..+... ++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 988888899999999999999875443332 223 333333 689999999999864
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=158.88 Aligned_cols=118 Identities=22% Similarity=0.182 Sum_probs=77.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~ 166 (571)
....+|+++|.+|+|||||+++|+.. ....... ...+.+..........+. ..++||||||+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG--RFEKNYN--------------ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC--STTCEEE--------------TTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC--CCCCCCC--------------CccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 34679999999999999999999621 1111000 011222221111111112 679999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
++.......++.+|++|+|+|+.++...+....| ..+ ...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9887788889999999999999976554443333 222 234789999999999854
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=149.80 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=64.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+++|+... ... . ...+ .+... .....+......+.||||||+.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~--~-~~~t-----------~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGA--FPE--S-YTPT-----------VFERY-MVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC------------CCC-----------CCEEE-EEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCC--CCC--C-CCCc-----------cceeE-EEEEEECCEEEEEEEEECCCchh
Confidence 456799999999999999999997211 100 0 0000 01011 11112222345799999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+...
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 9888888999999999999998754333322 22 33333 37999999999998654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=149.14 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=74.8
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
.+...+|+++|.+|+|||||+++|....+.... ....+.+.......+......+.+|||||+.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 345689999999999999999999511111000 0001111111122222234578899999999
Q ss_pred CcHH-HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 167 DFTL-EVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~-~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
++.. ....+++.+|++|+|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 8765 4566788999999999998643322222 2233332 3799999999999864
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=173.15 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+.... . ......|+|.+.....+.+++..++||||||+.++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~---a--------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQER---A--------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG 295 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEETTEEEEEEC--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---c--------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch
Confidence 35799999999999999999962211 0 111234667777777788899999999999998865
Q ss_pred HHH--------HHHHHhcCeEEEEEeCCCCCch----hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEV--------ERALRVLDGAICLFDSVAGVEP----QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~--------~~~l~~~D~~ilVvda~~g~~~----~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..+ ..+++.+|++++|+|++++... .....+..+. ++|+++|+||+|+...
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 433 2356789999999999988776 3444444333 7999999999998654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-17 Score=153.14 Aligned_cols=116 Identities=14% Similarity=-0.007 Sum_probs=76.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
.+..+|+++|+.|+|||||+++|+.... .. . .. +++.......+..++ ..+.||||||+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~--~-~~--------------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 78 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PT--E-YI--------------PTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------------------------CCSSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CC--C-CC--------------CcccceeEEEEEECCEEEEEEEEECCCC
Confidence 4567999999999999999999972210 00 0 00 011111112233344 57789999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH--HHHHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET--VWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++|+|+|+++........ .+..+... ++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 998777777889999999999998754433332 22333332 8999999999998653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=145.75 Aligned_cols=109 Identities=15% Similarity=0.099 Sum_probs=74.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
..+..+|+++|..|+|||||+++|+..... . .+.+ .+... ...+.+++ ..+.||||||
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~-----------~~~~----t~~~~---~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYV--Q-----------EESP----EGGRF---KKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCC--C-----------CCCT----TCEEE---EEEEEETTEEEEEEEEECSS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCC--C-----------CcCC----CcceE---EEEEEECCEEEEEEEEECCC
Confidence 345679999999999999999999832211 0 0000 01111 12233333 6678899999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCcc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRL 220 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~ 220 (571)
+.+|. +++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99876 78889999999999875544443333 33433 468999999999985
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-18 Score=161.55 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=77.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
+...+|+++|.+|+|||||+++|+ +... ..+...+++.......+.+++ ..++||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~---~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA---DDTY---------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB---CCCC---------------CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh---cCCC---------------CCCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999995 1100 001112223333333444444 67999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhc---CCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADKY---GVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~ivviNK~D~~~ 221 (571)
.+|...+..+++.+|++|+|+|+.+.........| ..+... ++|+++|+||+|+..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 99888788889999999999999886544443333 333332 789999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=150.83 Aligned_cols=116 Identities=13% Similarity=0.009 Sum_probs=77.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+........ .. ..+.+... ...+......+.||||||+.+|.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~-----------t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----VP-----------TVFENYVA-DIEVDGKQVELALWDTAGQEDYD 87 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEEEE-EEEETTEEEEEEEEECTTCTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----CC-----------cccceEEE-EEEECCEEEEEEEEECCCcHHHH
Confidence 468999999999999999999842211000 00 01111111 11222223679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.....+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 7778888999999999999864332222 233444443 8999999999998653
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=168.37 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC-CcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV-DFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~-~f~ 169 (571)
.+|+++|.+|+|||||+|+|+.....+ .. ...|+|.+.....+.+++..++||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~---vs--------------~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI---VT--------------DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC---CC--------------CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc---cC--------------CCCCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 689999999999999999998432111 11 113556666666777788999999999998 653
Q ss_pred --------HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 170 --------LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 --------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|++++...+..++++.+ .++|+++|+||+|+..
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3456789999999999999988777777777655 4789999999999854
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=147.27 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=73.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|..|+|||||+++|+...... . ...+ .+.+. .....+......+.||||||+.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~----~-~~~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFIS----E-YDPN-----------LEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS----C-CCTT-----------CCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCc----c-cCCC-----------cccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 346799999999999999999998432110 0 0000 11111 11122223446789999999988
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
|.. +...++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 765 36788999999999999864333332222 33332 4899999999999854
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=153.65 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=80.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|..|+|||||+++|+......... .+ .+.+. .....+......+.||||||+.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV-----PT-----------VFENY-TACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEE-EEEEEC--CEEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC-----Ce-----------eeeeE-EEEEEECCEEEEEEEEECCCCHh
Confidence 346799999999999999999998432110000 00 11121 11222334557899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhH-HHHH-HHHHhc--CCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQS-ETVW-RQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~-~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++...... ...| ..+... ++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGC
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 98888888999999999999987544443 2333 444443 7899999999998653
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=157.57 Aligned_cols=201 Identities=16% Similarity=0.208 Sum_probs=116.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|++|+|||||+|+|+ +........ ++ .......++++......+.+++ ..++||||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~---~~~~~~~~~-~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF---LTDLYSPEY-PG------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS---SSCC----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHh---CCCccccCC-CC------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 5799999999999999999985 211111100 00 0001123344444444555544 4899999999954
Q ss_pred c-------HHHH-------HHHHHh-------------cCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 F-------TLEV-------ERALRV-------------LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f-------~~~~-------~~~l~~-------------~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+ .... ..++.. +|+++++++.. ++....+...++.+.. ++|+++|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 3 2222 444544 67888888655 5888888888888877 8999999999998
Q ss_pred ccc-chhhhHHHHHHHh---CCcceeee-----------------cc---CCCCCCcceeeecccceeEEecCCCCCcee
Q 008294 220 LGA-NFFRTRDMIVTNL---GAKPLVVQ-----------------LP---VGAEDNFKGVVDLVKMKAIIWSGEELGAKF 275 (571)
Q Consensus 220 ~~~-~~~~~~~~i~~~l---~~~~~~~~-----------------~p---i~~~~~~~~~id~~~~~~~~~~~~~~g~~~ 275 (571)
... +.....+.+.+.+ +....++. +| ++....+....+.+..+.|.|+
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg-------- 228 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG-------- 228 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC--------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc--------
Confidence 753 3444445555544 33222111 11 3333344433455555666553
Q ss_pred eeecccHHHHHHHHHHHHHHH-----HHHhhcCHHHHHHH
Q 008294 276 AYEDIPANLQKMAQEYRSQMI-----ETIVELDDEAMESY 310 (571)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~-----e~~~~~~~~l~e~~ 310 (571)
..++++.....+..+|+.|+ |.....++.++|.|
T Consensus 229 -~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~y 267 (274)
T 3t5d_A 229 -VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY 267 (274)
T ss_dssp -EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHH
T ss_pred -eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445545555667777777 88888888888888
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=149.41 Aligned_cols=117 Identities=15% Similarity=-0.008 Sum_probs=78.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|.+|+|||||+++|......... ..+ .+.... ....+......+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t-----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----VPT-----------VFENYI-ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----CCS-----------SCCCCE-EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc-----CCc-----------ccceEE-EEEEECCEEEEEEEEECCCchhH
Confidence 3578999999999999999999843221100 000 011111 11122223358999999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 87777888999999999999864333322 233344444 8999999999998654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-17 Score=154.20 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec----CeEEEEEcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----KHRINIIDTP 163 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----~~~i~liDTP 163 (571)
....+|+++|++|+|||||+++|+........ ++ ...+..+.....+.++ ...+.|||||
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~~-----~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK-----------DY-----AMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC-----------CC-----CCccceEEEEEEEEECCcccEEEEEEEECC
Confidence 34579999999999999999999732000000 00 0011112222333344 4689999999
Q ss_pred CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCCeEEEEecCCccc
Q 008294 164 GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 164 G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~------~~~p~ivviNK~D~~~ 221 (571)
|+.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 9999888888889999999999999875443333333 33333 4789999999999854
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=146.15 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC-----
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH----- 165 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~----- 165 (571)
.+|+++|++|+|||||+++|+... ... ....|+|....... +. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~---~~~---------------~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK---VRR---------------GKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC---CSS---------------SSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---Ccc---------------CCCCCccceeEEEe--cC--CEEEEECCCcccccc
Confidence 589999999999999999997211 100 01123343333222 22 7899999995
Q ss_pred ------CCcHHHHHHHHHh----cCeEEEEEeCCCC-----------CchhHHHHHHHHHhcCCCeEEEEecCCccccch
Q 008294 166 ------VDFTLEVERALRV----LDGAICLFDSVAG-----------VEPQSETVWRQADKYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 166 ------~~f~~~~~~~l~~----~D~~ilVvda~~g-----------~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~ 224 (571)
..|......+++. +++++.|+|+... ...++.+.+..+...++|+++|+||+|+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 138 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV- 138 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-
Confidence 3344444444444 5677777776531 12223345555666789999999999987653
Q ss_pred hhhHHHHHHHh
Q 008294 225 FRTRDMIVTNL 235 (571)
Q Consensus 225 ~~~~~~i~~~l 235 (571)
.+..+++.+.+
T Consensus 139 ~~~~~~~~~~~ 149 (190)
T 2cxx_A 139 QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 23333444333
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=140.52 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=71.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|.+|+|||||+++|+...... . ..+ .|... .....+......+.+|||||+.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----~-~~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-----L-EKT-----------ESEQY-KKEMLVDGQTHLVLIREEAGAPD- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-----C-SSC-----------SSSEE-EEEEEETTEEEEEEEEECSSSCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-----c-CCC-----------cceeE-EEEEEECCEEEEEEEEECCCCch-
Confidence 45789999999999999999998422110 0 000 11111 11112222336789999999987
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HH---Hh---cCCCeEEEEecCCcc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QA---DK---YGVPRICFVNKMDRL 220 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~---~~---~~~p~ivviNK~D~~ 220 (571)
..+++.+|++|+|+|+++.........|. .+ .. .++|+++|+||+|+.
T Consensus 67 ----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 ----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 45778899999999998754444443331 22 22 378999999999984
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=147.10 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=78.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+......... .+ .+... .....+......+.||||||+.+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-----PT-----------VFENY-TASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEE-EEEEECSSCEEEEEEEEECCSGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cc-----------cceeE-EEEEEECCEEEEEEEEECCCChh
Confidence 346789999999999999999998432110000 00 01111 11112223456899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 877777788999999999999875433332 233 33333 3789999999999864
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=169.05 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=76.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|++|+|||||+|+|+.....+. .. ..|+|.+.....+.+++..++||||||+.++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v---~~--------------~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIV---TD--------------LPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCC---SC--------------CTTCCHHHHHHEEEETTEEEEECC--------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccc---cC--------------CCCeeEEEEEEEEEECCEEEEEEECCccccch
Confidence 35799999999999999999985432111 00 12344444444556688999999999997764
Q ss_pred HHHHH--------HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVER--------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~--------~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
..+.. .++.+|++++|+|++++...+..+++..+.. .|+++|+||+|+...
T Consensus 287 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 287 DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEK 345 (462)
T ss_dssp ------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCG
T ss_pred hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcc
Confidence 43322 4677899999999999888888777766643 799999999998754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=165.34 Aligned_cols=240 Identities=14% Similarity=0.089 Sum_probs=142.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCccc------ccchhhhh----hhceeEeec-------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT------MDWMEQEQ----ERGITITSA------- 146 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~------~d~~~~e~----~~g~t~~~~------- 146 (571)
..+...|+++|++|+|||||+++|... .+........+.+++. .+....+. .++.-....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 345789999999999999999999733 2222222222222211 11111100 111100000
Q ss_pred --------eEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 147 --------ATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 147 --------~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...+.+.++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 0011256889999999999886544 4689999999999976533221110 113578999999999
Q ss_pred cccc-chhhhHHHHHHHhCC-c-----ceeeeccCC--CCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHH
Q 008294 219 RLGA-NFFRTRDMIVTNLGA-K-----PLVVQLPVG--AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQ 289 (571)
Q Consensus 219 ~~~~-~~~~~~~~i~~~l~~-~-----~~~~~~pi~--~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 289 (571)
+... +....++++++.++. . ..+..+|+. .+.++.++++.+.+....|.. + ..+|+ ....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~---~-----~~~~~---~r~~ 274 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA---S-----GRLQQ---VRQQ 274 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH---T-----THHHH---HHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh---C-----ChHHH---HHHH
Confidence 9764 455555666654321 1 023345554 567777877777654432311 1 12222 2233
Q ss_pred HHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcceeeeeccccCCCChHHHHHHHHH
Q 008294 290 EYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVD 357 (571)
Q Consensus 290 ~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~ 357 (571)
..+..+.|.+ +++++++|+++ ++.+++...+++++..+.++|++| .+.|++.+..
T Consensus 275 ~~~~~~~e~i---~e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~--------~~~~~~~~~~ 329 (341)
T 2p67_A 275 QSVEWLRKQT---EEEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTG--------LRQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHH--------HHHHHHHHHC
T ss_pred HHHHHHHHHH---HHHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHH--------HHHHHHHHhh
Confidence 4566666664 78999999995 888899999999999999999975 3567776654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-16 Score=148.19 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=77.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|.+|+|||||+++|+......... .+ .+... .....+......+.||||||+.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-----PT-----------VFENY-TASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-----CC-----------SEEEE-EEEEESSSSEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-----Cc-----------cceeE-EEEEEECCEEEEEEEEeCCCcHh
Confidence 346799999999999999999998432110000 00 01111 11112222357899999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 877777788999999999999874433332 223 33333 3789999999999864
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=155.82 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.+....++|+++|++|+|||||+|+|+.... ... .....++|.......+.+.+..++||||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~---~~~-------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG 87 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKV---FHS-------------GTAAKSITKKCEKRSSSWKETELVVVDTPG 87 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCC---SCC--------------------CCSCEEEEEEETTEEEEEEECCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCc---Ccc-------------CCCCCceeeeEEEEEEEeCCceEEEEECCC
Confidence 3445678999999999999999999972111 000 011124566666667788899999999999
Q ss_pred CCCc-------HHHHHHH----HHhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCCeEEEEecCCccccc-hh--
Q 008294 165 HVDF-------TLEVERA----LRVLDGAICLFDSVAGVEPQSETVWRQAD-----KYGVPRICFVNKMDRLGAN-FF-- 225 (571)
Q Consensus 165 ~~~f-------~~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~-----~~~~p~ivviNK~D~~~~~-~~-- 225 (571)
+.+. ..++... .+.+|++|+|+|+.. ........+..+. ....|+++|+||+|+.... ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 166 (239)
T 3lxx_A 88 IFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY 166 (239)
T ss_dssp CC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH
Confidence 8753 2233333 345699999999974 3444444443332 2356999999999986543 22
Q ss_pred -----hhHHHHHHHhCCcceeeecc
Q 008294 226 -----RTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 226 -----~~~~~i~~~l~~~~~~~~~p 245 (571)
+.++++.+.++.....+..+
T Consensus 167 i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 167 LREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp ----CHHHHHHHHHHSSSEEECCTT
T ss_pred HHhchHHHHHHHHHcCCEEEEEECC
Confidence 24566666666654444333
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=151.68 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=84.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f 168 (571)
..+|+++|.+|+|||||+++|+...... .....|.|+......+.+ ++..+++|||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-----------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-----------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-----------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------cccCcCCccceEEEEEEeCCceEEEEEECCCcHHH
Confidence 4689999999999999999997211110 111235566665555554 6789999999999988
Q ss_pred -----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH----HHHh--cCCCeEEEEecCCcccc
Q 008294 169 -----TLEVERALRVLDGAICLFDSVAGVEPQSETVWR----QADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 -----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~~--~~~p~ivviNK~D~~~~ 222 (571)
.......++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 66 MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 445667788999999999999876555544432 2222 28999999999998763
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=156.40 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCC-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVD- 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~- 167 (571)
+..|+++|.+|||||||+++|... ..... + ....|.......+.+.+ ..++||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~---~~~i~---------~------~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA---KPKIA---------D------YHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE---CCEES---------S------TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC---CCccc---------c------CCccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 568999999999999999999521 11110 1 11334444444555554 7899999999643
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCC---CCchhH-HHHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVA---GVEPQS-ETVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~---g~~~~~-~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
+.....+.+..+|++|+|+|+++ ...... ..++..+.. .++|+++|+||+|+..
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 44566677788999999999976 222222 233344544 3789999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=154.39 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=55.6
Q ss_pred cCeEEEEEcCCCCCC-------------cHHHHHHHHHhcCeEEEEEeC-CCCCchhH-HHHHHHHHhcCCCeEEEEecC
Q 008294 153 NKHRINIIDTPGHVD-------------FTLEVERALRVLDGAICLFDS-VAGVEPQS-ETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------------f~~~~~~~l~~~D~~ilVvda-~~g~~~~~-~~~~~~~~~~~~p~ivviNK~ 217 (571)
....++||||||+.+ +...+..+++.+|++++|+|+ ..+..... ..++..+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999865 456677889999999999997 55555443 467777777899999999999
Q ss_pred Ccccc
Q 008294 218 DRLGA 222 (571)
Q Consensus 218 D~~~~ 222 (571)
|+...
T Consensus 209 Dl~~~ 213 (315)
T 1jwy_B 209 DLMDK 213 (315)
T ss_dssp TSSCS
T ss_pred ccCCc
Confidence 98653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-17 Score=154.75 Aligned_cols=118 Identities=15% Similarity=0.019 Sum_probs=79.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|+|||||+++|+......... .+ . +... .....+......+.+|||||+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----~t-~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----PT-V----------FDNY-SANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 446789999999999999999997321100000 00 0 0000 11112223456778999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhc--CCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++|+|+|+++....... ..+..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 988888899999999999999876544433 223334433 7999999999998643
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=151.57 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=84.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeeeec-------------------Ccccccchh--hh------h
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHE-------------------GTATMDWME--QE------Q 137 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~~-------------------g~~~~d~~~--~e------~ 137 (571)
....++|+++|.+|+|||||+|+|+........ ..+..+ |..+.+... .+ .
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999833221000 000001 100011110 00 0
Q ss_pred h----hceeEeeceEEEeec-CeEEEEEcCCCCCC-------------cHHHHHHHHHhcCeEE-EEEeCCCCCchhHH-
Q 008294 138 E----RGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVLDGAI-CLFDSVAGVEPQSE- 197 (571)
Q Consensus 138 ~----~g~t~~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~~l~~~D~~i-lVvda~~g~~~~~~- 197 (571)
- .|++.......+... ...++||||||+.+ +...+..+++.+|.+| +|+|+..+...+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0 233322222222222 47899999999752 3455667788888777 69999988777764
Q ss_pred HHHHHHHhcCCCeEEEEecCCcccc
Q 008294 198 TVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 198 ~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+++.+...++|+++|+||+|+...
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred HHHHHhCCCCCeEEEEEEccccCCC
Confidence 4667777778999999999998653
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=142.24 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=71.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|.+|+|||||+++|+.....+. ...+ ..|.+.......+......+.+|||+|...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~---~~~~------------~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD---SDCE------------VLGEDTYERTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTC---CC---------------CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC---CcCC------------ccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence 3467899999999999999999972111110 0000 012222112222222234678999999876
Q ss_pred c-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 168 F-TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
. .......++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 3 22223345678999999999864333322223 33332 3799999999999854
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=152.05 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=79.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGH 165 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~ 165 (571)
....+|+++|.+|+|||||+++++........ . +++.......+..++ ..+.||||||+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-----~--------------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~ 213 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----I--------------PTVFDNYSANVMVDGKPVNLGLWDTAGL 213 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-----C--------------CCSEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc-----C--------------CcccceeEEEEEECCEEEEEEEEeCCCc
Confidence 34578999999999999999999743211000 0 111111122223333 45669999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HH-HHHHhc--CCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSET-VW-RQADKY--GVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~-~~~~~~--~~p~ivviNK~D~~~~ 222 (571)
.+|......+++.+|++++|+|+++........ .| ..+... ++|+++|+||+|+...
T Consensus 214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 999888888889999999999998754443332 22 344433 8999999999998643
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=148.48 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|.+|+|||||+|+|+ +.....+. ..+.|.......+...+..+.+|||||+.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~---~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALT---TAKPEIAS---------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHC---SSCCEEEC---------------CTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCccCC---------------CCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 456799999999999999999995 32211111 112344444445556778999999999866
Q ss_pred cH--------HHHHHHH-HhcCeEEEEEeCCCCC--chhHH-HHHHHHHh-c-CCCeEEEEecCCcccc
Q 008294 168 FT--------LEVERAL-RVLDGAICLFDSVAGV--EPQSE-TVWRQADK-Y-GVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~--------~~~~~~l-~~~D~~ilVvda~~g~--~~~~~-~~~~~~~~-~-~~p~ivviNK~D~~~~ 222 (571)
+. .....++ ..+|++++|+|+.... ..... ..+..+.. . ++|+++|+||+|+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE 295 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence 42 1222222 3589999999987643 33332 33333333 2 8999999999998643
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=140.34 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE---eecCeEEEEEcCCCCCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTPGHVD 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~---~~~~~~i~liDTPG~~~ 167 (571)
.+|+++|.+|+|||||+++|+..... ..+.. ....|+........+ ......+.+|||||+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~--~~~~~------------~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKS--DLGMQ------------SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCc--cCCCc------------ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 47999999999999999999621000 00000 001122211111111 11457899999999988
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCc-hhHHHHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVE-PQSETVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
|......+++.+|++++|+|.+++.. ......| ..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 87767778889999999999987532 1222222 22222 37899999999998653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=134.16 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=70.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
...+|+++|.+|+|||||+++|+........ ++ ...|.+.......+......+.+|||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~ 69 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DX----EVLGEDTYERTLMVDGESATIILLDMWENKGE 69 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------------GGGCTTEEEEEEEETTEEEEEEEECCCCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc-----------cc----cccceeEEEEEEEECCeEEEEEEEEeccCcch
Confidence 3578999999999999999999743221110 00 0012222122222222234678999999765
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|.++.........| ..+.. .++|+++|.||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 70 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 222234567889999999999864333332222 22332 3789999999999753
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=146.93 Aligned_cols=116 Identities=20% Similarity=0.258 Sum_probs=75.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
..+.|+++|++|+|||||+|+|. +.... .+...+.|.+.....+.+++..+.+|||||+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~---~~~~~---------------~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLT---GLTQK---------------VDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHH---CC--------------------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHH---CCCcc---------------ccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 35679999999999999999996 22111 1112345666666667778889999999997431
Q ss_pred --------HHHHHHHHHhcCeEEEEEeCCCCC--chhHH-HHHHHHHh---cCCCeEEEEecCCcccc
Q 008294 169 --------TLEVERALRVLDGAICLFDSVAGV--EPQSE-TVWRQADK---YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 --------~~~~~~~l~~~D~~ilVvda~~g~--~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~ 222 (571)
...+...+..+|++++|+|+++.. ..... .....+.. .++|+++|.||+|+...
T Consensus 240 lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 122344578899999999998754 11111 12223333 57899999999998643
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-14 Score=136.53 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++|++|+|||||+++|+....... ... + ..++.. .+....+++|||||+.+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~---------~-------~~~~~~-----~~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVS---------Q-------EPLSAA-----DYDGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCC---------S-------SCEEET-----TGGGSSCEEEECCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eee---------c-------CceEEE-----EeeCceEEEEECCCcHH
Confidence 4467999999999999999999984321100 000 0 001111 11457899999999999
Q ss_pred cHHHHHHHHHh----cCeEEEEEeCC---CCCchhHHHHHHHHHh------cCCCeEEEEecCCccccc
Q 008294 168 FTLEVERALRV----LDGAICLFDSV---AGVEPQSETVWRQADK------YGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 168 f~~~~~~~l~~----~D~~ilVvda~---~g~~~~~~~~~~~~~~------~~~p~ivviNK~D~~~~~ 223 (571)
|...+..+++. +|++|+|+|+. +........+...+.. .++|+++|+||+|+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 98888888887 89999999998 3333333333233221 589999999999997654
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=156.42 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=79.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec------eEEE--eecCeEEE
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA------ATTT--YWNKHRIN 158 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~------~~~~--~~~~~~i~ 158 (571)
..+..+|+++|.+|+|||||+++|..... .. . .....|.++... ...+ ...+..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~--~------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF--DP--K------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC--CC--C------------CCCccceEEEEeccccccceeecCCCceEEEE
Confidence 44568999999999999999999972211 00 0 000111111110 0000 12367899
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG--VPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~--~p~ivviNK~D~~~ 221 (571)
+|||||+..|.......++.+|++|+|+|++.. ......+..+..++ +|+++|+||+|+..
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 999999999888778889999999999999764 34444555666544 99999999999864
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=132.23 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=76.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~ 166 (571)
...+|+++|+.|+|||||+++|+........ ....|.+... ..+.+++ ..+.+|||||+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~--~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFAT--RSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEE--EEEEETTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEE--EEEEECCEEEEEEEEECCCch
Confidence 3578999999999999999999732111000 0001222222 2333444 567899999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
.|.......++.+|++++|+|..+.........| ..+.. .+.|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 8876677778899999999999865433332222 22322 4688999999999854
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=145.95 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=74.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCccccc------ch---hhhhhhceeEeeceE-------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTATMD------WM---EQEQERGITITSAAT------- 148 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~~~d------~~---~~e~~~g~t~~~~~~------- 148 (571)
.+.++|+++|++|+|||||+++|.... |........+++..... .. ......++.+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 457899999999999999999997432 32222222222222110 00 000111222211111
Q ss_pred ---------EEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 149 ---------TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 149 ---------~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
.+.+.++.+.||||||... .....+..+|++++|+|+..+...+... ....++|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCC
Confidence 1123578999999999765 2334458899999999997654432211 01134699999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 230 ~~~ 232 (355)
T 3p32_A 230 EHH 232 (355)
T ss_dssp GGH
T ss_pred cCh
Confidence 643
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=154.70 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCC---cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHHhcCCCeEEEEecCCcccc
Q 008294 155 HRINIIDTPGHVD---FTLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 155 ~~i~liDTPG~~~---f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~~~~p~ivviNK~D~~~~ 222 (571)
..++||||||+.+ ....+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 4699999999765 4556678889999999999999988887777775 455678999999999998643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=130.88 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=75.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.....+|+++|++|+|||||+++|+ |.... .. .....|.+..... +.+++ .+.+|||||+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~---g~~~~-~~------------~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~ 82 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLT---NQKSL-AR------------TSKTPGRTQLINL--FEVAD-GKRLVDLPGY 82 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTC---CC--------------------------CCEEE--EEEET-TEEEEECCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh---CCCcc-cc------------ccCCCccceeeEE--EEecC-CEEEEECcCC
Confidence 34456789999999999999999995 32100 00 0112343433222 22233 6889999998
Q ss_pred CCc----------HHHHHHHH---HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 166 VDF----------TLEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f----------~~~~~~~l---~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+. ...+...+ +.+|++++|+|+..+......+....+...++|.++|.||+|+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 83 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp C------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred cccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 642 22222333 4679999999999887766666667777889999999999998653
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=137.45 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=80.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|++|+|||||+|+|+...... . ....++|.......+.+++..++||||||+.+|
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~--~---------------~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR--V---------------SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC--C---------------CSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc--c---------------CCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 46899999999999999999998322110 0 011344666666677788999999999999887
Q ss_pred HHH---HHHHHH------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-----CCCeEEEEecCCccc
Q 008294 169 TLE---VERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-----GVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~---~~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 221 (571)
... ..+.+. .+|++++|+|... .........+..+... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 332 222232 6799999987754 3444444555555443 248999999999853
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=133.31 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=80.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|++|+|||||+|+|+.... ...+. ..++|.......+...+..++||||||+.+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~--~~~~~---------------~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERV--VSISP---------------FQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCC--SCCCS---------------SSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc--ccccC---------------CCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 3468999999999999999999973211 00000 123444444556677889999999999977
Q ss_pred cH---HHHHHHHH------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-C----CCeEEEEecCCcccc
Q 008294 168 FT---LEVERALR------VLDGAICLFDSVA-GVEPQSETVWRQADKY-G----VPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~---~~~~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 222 (571)
+. ......+. .+|++++|+|+.. .........+..+... + +|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 100 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 63 22333322 6899999988754 4555555566555432 3 699999999998643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=126.69 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPG 164 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG 164 (571)
.+...+|+++|+.|+|||||+++|......... ...++.......+.+++ ..+.+|||||
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g 87 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------------KSTIGVEFATRSIQVDGKTIKAQIWDTAG 87 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC------------------CCCCSEEEEEEEEEETTEEEEEEEEEECS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999999732211000 01112222223334444 4566799999
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+.++...+...++.+|++++|+|..+.........| ..+.. .+.|+++++||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 88 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 998877777788889999999998764332222222 22322 3688999999999854
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=131.86 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=73.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhhhhhhceeEeeceE----EE----------ee
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGITITSAAT----TT----------YW 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~g~t~~~~~~----~~----------~~ 152 (571)
+.++|+++|++|+|||||+++|+...+...+.+.+ +.+.+ .|.... ...|.++..... .+ .+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~-~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK-ADYERV-RRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH-HHHHHH-HTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc-hhHHHH-HhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 46899999999999999999998664433222222 22211 111111 122333111100 11 23
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+..+.+|||+|+.+..... ....+.+++|+|+..+... .+......++|.++|+||+|+..
T Consensus 107 ~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCc
Confidence 56789999999952211000 0246889999999887432 23333345789999999999853
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=130.07 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=79.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+.++|+++|+.|+|||||+++|+...... .... ...+++. .+.+..+.+|||||+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-~~~~--------------~~~~~~~-------~~~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVS--------------QEPLSAA-------DYDGSGVTLVDFPGHVK 103 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCCCTTCSEEEETTCCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-cccc--------------CCCceee-------eecCCeEEEEECCCCch
Confidence 456799999999999999999997332110 0000 0011111 12567899999999998
Q ss_pred cHHHHHHHHHh----cCeEEEEEeCCCCCchh-H-HHHHHHHH-------hcCCCeEEEEecCCccccc-hhhhHHHHHH
Q 008294 168 FTLEVERALRV----LDGAICLFDSVAGVEPQ-S-ETVWRQAD-------KYGVPRICFVNKMDRLGAN-FFRTRDMIVT 233 (571)
Q Consensus 168 f~~~~~~~l~~----~D~~ilVvda~~g~~~~-~-~~~~~~~~-------~~~~p~ivviNK~D~~~~~-~~~~~~~i~~ 233 (571)
|...+...++. +|++|+|+|+....... . ...+..+. ..++|+++|+||+|+.... ..++.+.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp SSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 86666666665 89999999998221111 1 11122221 1389999999999997643 4555555554
Q ss_pred Hh
Q 008294 234 NL 235 (571)
Q Consensus 234 ~l 235 (571)
.+
T Consensus 184 ~l 185 (193)
T 2ged_A 184 EI 185 (193)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-13 Score=133.57 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH-
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL- 170 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~- 170 (571)
+|+++|..|+|||||++++.... .... ....+.|+......+. ....++||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~~---------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPLD---------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSGG---------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCCc---------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccch
Confidence 47899999999999999875111 0000 0001223333333332 347899999999999964
Q ss_pred --HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH----HHH--hcCCCeEEEEecCCcccc
Q 008294 171 --EVERALRVLDGAICLFDSVAGVEPQSETVWR----QAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 --~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~--~~~~p~ivviNK~D~~~~ 222 (571)
....+++.++++|+|+|+++. .......|. .+. ..++|+++|+||+|+...
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 467889999999999999986 333333332 222 247899999999998754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=141.80 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=79.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcce--eeeeecC-------------------cccccchh--hh------hh-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYK--IGEVHEG-------------------TATMDWME--QE------QE- 138 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~--~g~~~~g-------------------~~~~d~~~--~e------~~- 138 (571)
..+.|+++|.+|+|||||+|+|+........ .....++ ..+.+... .+ .-
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999732211000 0000011 00011111 11 11
Q ss_pred ---hceeEeeceEEEeec-CeEEEEEcCCCCCC-------------cHHHHHHHHHhc-CeEEEEEeCCCCCchhHH-HH
Q 008294 139 ---RGITITSAATTTYWN-KHRINIIDTPGHVD-------------FTLEVERALRVL-DGAICLFDSVAGVEPQSE-TV 199 (571)
Q Consensus 139 ---~g~t~~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~~~~~~l~~~-D~~ilVvda~~g~~~~~~-~~ 199 (571)
.|+........+... ...++||||||+.+ +...+..+++.+ +++++|+|+..++..+.. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 344333333333332 57899999999753 233445556555 456667788777766655 36
Q ss_pred HHHHHhcCCCeEEEEecCCcccc
Q 008294 200 WRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 200 ~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++.+...+.|+++|+||+|+...
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHhCcCCCceEEEeccccccCc
Confidence 67777778999999999998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=139.14 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=63.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTPG~~~ 167 (571)
..+|+++|++|+|||||+++|+ +....... .......+...++++......+.+.+ ..+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~---~~~~~~~~------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLF---LTDLYPER------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHT---TCCC---------------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHh---CCCCCCCC------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 4789999999999999999985 21110000 00111111122333333333333343 3799999999954
Q ss_pred cHH-------HHH-------HHHHhc-------------CeEEEEEeC-CCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 168 FTL-------EVE-------RALRVL-------------DGAICLFDS-VAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 168 f~~-------~~~-------~~l~~~-------------D~~ilVvda-~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
+.. .+. .+++.+ |+++++|+. .+++.......+..+ ..++|+|+|+||+|+
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl 186 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADT 186 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCC
Confidence 322 121 444443 357777776 567777666555554 367999999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
...
T Consensus 187 ~~~ 189 (361)
T 2qag_A 187 LTL 189 (361)
T ss_dssp SCH
T ss_pred CCH
Confidence 653
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=146.87 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=91.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCccc---ccch--------------hhhh-----hhceeEee
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTAT---MDWM--------------EQEQ-----ERGITITS 145 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~---~d~~--------------~~e~-----~~g~t~~~ 145 (571)
...+.|+|+|++|+|||||+|+|+.........+. .++++. ..+. ..+. ..|.....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45789999999999999999999843221000110 111100 0000 0000 00101111
Q ss_pred ceEEEeecC---eEEEEEcCCCCCC-----------cHHHHHHHHHhcCeEEEEEeCCC-CCchhHHHHHHHHHhcCCCe
Q 008294 146 AATTTYWNK---HRINIIDTPGHVD-----------FTLEVERALRVLDGAICLFDSVA-GVEPQSETVWRQADKYGVPR 210 (571)
Q Consensus 146 ~~~~~~~~~---~~i~liDTPG~~~-----------f~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ 210 (571)
.+..+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +.......++..+...+.|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv 221 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI 221 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE
Confidence 222333332 4799999999986 66778888999999999999987 57778888888888888999
Q ss_pred EEEEecCCcccc-chhhhHHHHH
Q 008294 211 ICFVNKMDRLGA-NFFRTRDMIV 232 (571)
Q Consensus 211 ivviNK~D~~~~-~~~~~~~~i~ 232 (571)
++|+||+|+... +..+++..+.
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhh
Confidence 999999999753 3444444443
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-13 Score=133.85 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=29.8
Q ss_pred hcCeEEEEEeCCCC--CchhHHHHH-HHH----HhcCCCeEEEEecCCccc
Q 008294 178 VLDGAICLFDSVAG--VEPQSETVW-RQA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 178 ~~D~~ilVvda~~g--~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~ 221 (571)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 58999999999875 333332222 222 235799999999999854
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=145.24 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=45.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE---------------------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT--------------------- 150 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~--------------------- 150 (571)
+|+|+|.+|+|||||+|+|+.. ....+. . .++|+.......
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~---~~~~~~-~--------------p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV---DVEIAN-Y--------------PFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC---CCcccC-C--------------CCcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 6899999999999999999722 111111 1 122222222211
Q ss_pred eec---CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCCC
Q 008294 151 YWN---KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVAG 191 (571)
Q Consensus 151 ~~~---~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~g 191 (571)
.++ ...++||||||+.+... ....+++.+|++++|+|+.++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 011 35799999999875321 122346889999999999875
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-13 Score=147.05 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=84.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeee-------------------e--ecCcccccchhh--h------h--
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGE-------------------V--HEGTATMDWMEQ--E------Q-- 137 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~-------------------~--~~g~~~~d~~~~--e------~-- 137 (571)
..+.|+++|..++|||||+|+|+.........+. + ..+....+.... + .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999732110000000 0 001111111110 0 0
Q ss_pred --hhceeEeeceEEEee-cCeEEEEEcCCCCCCc-------------HHHHHHHH-HhcCeEEEEEeCCCCCchhHH-HH
Q 008294 138 --ERGITITSAATTTYW-NKHRINIIDTPGHVDF-------------TLEVERAL-RVLDGAICLFDSVAGVEPQSE-TV 199 (571)
Q Consensus 138 --~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~f-------------~~~~~~~l-~~~D~~ilVvda~~g~~~~~~-~~ 199 (571)
..|++-......+.. ....++|+||||...- ...+..++ ..+|++++|+|+..++..++. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 123333333333333 3457999999997651 12233334 467999999999998887776 67
Q ss_pred HHHHHhcCCCeEEEEecCCcccc
Q 008294 200 WRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 200 ~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+..+...+.|+++|+||+|+...
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCT
T ss_pred HHHHHhcCCCEEEEEeCcccCCc
Confidence 88888889999999999998753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=133.37 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC-eEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-HRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~liDTPG~~~f 168 (571)
...|+++|++|||||||+++|. +........ ...|.......+.+.+ ..++++||||+.+.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls---g~~~~i~~~---------------~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT---RAHPKIAPY---------------PFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC---SSCCEECCC---------------TTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHH---cCCccccCc---------------ccceecceeeEEEecCcceEEEEeccccccc
Confidence 4568999999999999999994 332221110 1123333333444554 78999999998642
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh-----cCCCeEEEEecCCccc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
.....+.+..+|.+++|+|+. ........ .++++.. .+.|.++|+||+|+..
T Consensus 219 a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 219 ASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp GGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred hhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 233455567799999999997 11111111 1222222 3689999999999764
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=127.49 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=84.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+|||.||+|||||+|+|. +.....+. ..++|+......+.+.+.+++|+||||..+-
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt---~~~~~v~~---------------~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLT---GTESEAAE---------------YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHH---SBCCCGGG---------------TCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHh---CCCCcccC---------------CCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 35689999999999999999996 32222211 2466888888888899999999999998652
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCCeEEEEecCCccc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK-----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~ 221 (571)
...+...++.+|++++|+|+.+.+.. ...+...+.. ...|.++++||+|+.+
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 34577788999999999999864322 2222233333 2568899999999754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-12 Score=129.40 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=39.6
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
..++.+.|+||||..... ......+|++++|+|+..+...+... . .-...|.++|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCCC
Confidence 367889999999975432 23357899999999998764322111 1 123578999999999864
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-12 Score=124.73 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc--CCcceeeeeecCcccc------------cchhhhhhhceeEeeceEE----
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT--GRNYKIGEVHEGTATM------------DWMEQEQERGITITSAATT---- 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~--g~~~~~g~~~~g~~~~------------d~~~~e~~~g~t~~~~~~~---- 149 (571)
.+...++++|..|+|||||+++|.... |........+.+.... +......+ +.........
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHH
Confidence 346788999999999999999997443 2222222223332211 11111000 1000000000
Q ss_pred -----------E-e-ecCeEEEEEcCCCCCCcHHH------HHHHHHhcCeEEEEEeCCCCCchhHHHH-----HHHHHh
Q 008294 150 -----------T-Y-WNKHRINIIDTPGHVDFTLE------VERALRVLDGAICLFDSVAGVEPQSETV-----WRQADK 205 (571)
Q Consensus 150 -----------~-~-~~~~~i~liDTPG~~~f~~~------~~~~l~~~D~~ilVvda~~g~~~~~~~~-----~~~~~~ 205 (571)
+ . ..++.+.||||||+.++... +..++.. +++|+|+|+........... ......
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 0 0 02368999999998775322 2234445 88999999976655544321 122334
Q ss_pred cCCCeEEEEecCCcccc
Q 008294 206 YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~~ 222 (571)
.++|.++|+||+|+...
T Consensus 170 ~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSE 186 (262)
T ss_dssp HTSCEEEEECCGGGCCH
T ss_pred cCCCeEEEEeccccccc
Confidence 58999999999998653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=126.77 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCCCc-------------HHHHHHHHHhcCeEEEEEeCCC-CC-chhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF-------------TLEVERALRVLDGAICLFDSVA-GV-EPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-------------~~~~~~~l~~~D~~ilVvda~~-g~-~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++||||||+.++ ...+..+++.+|++|+|+|+.. .. .......++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999999886 5667788999999999998753 22 23334555556667899999999999
Q ss_pred cccc
Q 008294 219 RLGA 222 (571)
Q Consensus 219 ~~~~ 222 (571)
+...
T Consensus 215 l~~~ 218 (360)
T 3t34_A 215 LMDK 218 (360)
T ss_dssp GCCT
T ss_pred cCCC
Confidence 8753
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-12 Score=135.35 Aligned_cols=217 Identities=17% Similarity=0.162 Sum_probs=119.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccc-hhhhhhhceeEeeceE-------------E
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDW-MEQEQERGITITSAAT-------------T 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~-~~~e~~~g~t~~~~~~-------------~ 149 (571)
.+.++|+++|++|+||||++++|.+.. |........+... ...++ .......++.+..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543 3222222211111 11111 1112233444322110 1
Q ss_pred EeecCeEEEEEcCCCCCC----cHHHHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCcccc
Q 008294 150 TYWNKHRINIIDTPGHVD----FTLEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGA 222 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~----f~~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~ 222 (571)
+.+.++.+.||||||... +..++.... ..+|.+++|+|+..+.. .......+... +|+ .+|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc-
Confidence 123678999999999874 233332222 26799999999998754 23333333332 785 89999999863
Q ss_pred chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhc
Q 008294 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVEL 302 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 302 (571)
.....+ .+...+|.... +++.++ ++. |+.......|-+...|. .....|+|.+.+.
T Consensus 255 ~~g~~l-~~~~~~g~PI~--fig~ge--~~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGAL-SAVAATKSPII--FIGTGE--HID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHH-HHHHHHCCCEE--EEECSS--STT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTT
T ss_pred chHHHH-HHHHHhCCCeE--Eecccc--chh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHH
Confidence 222233 35566775321 233222 222 12111111111111110 0034567777655
Q ss_pred ----CHHHHHHHhcCCCCCHHHHHHHHHhhcccCc
Q 008294 303 ----DDEAMESYLEGNEPDEETIKKLIRKGTIAGS 333 (571)
Q Consensus 303 ----~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~ 333 (571)
+++++++|++| +++.+++...+++....+.
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G~ 344 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMGP 344 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 67899999998 7888888888888766554
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-10 Score=114.76 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------------- 153 (571)
.+|+++|.+|+|||||+|+|.... ..... .+ +.|+......+.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~---~~v~~-~p--------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG---IEAAN-YP--------------FCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------C--------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CcccC-CC--------------CceECceEEEEecCCcccceeeeeeccccee
Confidence 479999999999999999997322 11111 11 12222222222222
Q ss_pred CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 008294 154 KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~ 190 (571)
+..++||||||+.++.. .....++.+|++++|+|+.+
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 35799999999988643 24567899999999999986
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-10 Score=113.20 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee--cCeEEEEEcCCCC--
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGH-- 165 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~liDTPG~-- 165 (571)
..+|+++|+.|+|||||+++|+.. +.....|....|... ..++........+.. ....+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~gi~~~g~~~--------~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT-DLYPERVISGAAEKI--------ERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC-CccCCCCcccCCccc--------CCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 468899999999999999998611 011111100000000 001111111111111 2357899999998
Q ss_pred -----CCcHHHHH-------HHHHhc-------------CeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 166 -----VDFTLEVE-------RALRVL-------------DGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 166 -----~~f~~~~~-------~~l~~~-------------D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
..|..... ..++.+ +.++++++.+ +++.....+.++.+. .++++++|+||.|+
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADT 167 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCC
Confidence 33322222 344433 2366666654 468887766665554 36899999999998
Q ss_pred cc
Q 008294 220 LG 221 (571)
Q Consensus 220 ~~ 221 (571)
..
T Consensus 168 ~~ 169 (301)
T 2qnr_A 168 LT 169 (301)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=115.21 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=66.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCccc-----------ccchhhhhhhceeEeece-----
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTAT-----------MDWMEQEQERGITITSAA----- 147 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~~~-----------~d~~~~e~~~g~t~~~~~----- 147 (571)
.+...++|+|++|+|||||+++|... .|.+.-.+ .+..+.. +.+.. +....-+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~-~d~~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~~l 129 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA-VDPSSTRTGGSILGDKTRMARLA--IDRNAFIRPSPSSGTL 129 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE-ECGGGGSSCCCSSCCGGGSTTGG--GCTTEEEECCCCCSSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE-EcCcccccccchHHHhhhheeec--cCcccccccCcccccc
Confidence 45678999999999999999999732 23222211 1111110 00000 00111110000
Q ss_pred -----------EEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 148 -----------TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 148 -----------~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
..+...+..+.||||||..+-.. .....+|.+++|+|+..+...+. ....+ ..++.++++||
T Consensus 130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK 202 (337)
T 2qm8_A 130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNK 202 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEEC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEc
Confidence 00223678999999999876322 23468899999999865422110 00000 13477889999
Q ss_pred CCcc
Q 008294 217 MDRL 220 (571)
Q Consensus 217 ~D~~ 220 (571)
+|+.
T Consensus 203 ~Dl~ 206 (337)
T 2qm8_A 203 ADDG 206 (337)
T ss_dssp CSTT
T ss_pred hhcc
Confidence 9964
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-09 Score=113.37 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEee----cCeEEEEEcCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYW----NKHRINIIDTPG 164 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~liDTPG 164 (571)
..+|+++|++|+|||||+++|+ |... ..+. +....+. .. |+......+.. ....+++|||||
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~---g~~~~~~~~---~~~~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLF---LTDLYSPEY---PGPSHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHT---TCCCCCCCC---CSCC------------CCEEEEEECC------CEEEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHh---CCCCCCCCC---CCcccCC-----cc--ceeeeeEEEEEecCCcccceeeeechh
Confidence 3578999999999999999996 3221 1110 0000000 00 11111111111 124789999999
Q ss_pred CCCcHH------HH--------HHHH-----------Hh--cCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEec
Q 008294 165 HVDFTL------EV--------ERAL-----------RV--LDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNK 216 (571)
Q Consensus 165 ~~~f~~------~~--------~~~l-----------~~--~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK 216 (571)
+.++.. .+ ..++ +. +++++++++++ +++...+...+..+.. ++|+|+|+||
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 98 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp ----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEES
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEc
Confidence 977521 11 1111 11 34566666665 6888888777777654 8999999999
Q ss_pred CCccc
Q 008294 217 MDRLG 221 (571)
Q Consensus 217 ~D~~~ 221 (571)
+|+..
T Consensus 177 ~Dll~ 181 (418)
T 2qag_C 177 ADTLT 181 (418)
T ss_dssp TTSSC
T ss_pred ccCcc
Confidence 99864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-09 Score=107.06 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe-------------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY------------------- 151 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~------------------- 151 (571)
.+|+++|.+|+|||||+|+|...... ... .+++ |+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~---v~~-~p~~--------------Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL---AAN-YPFA--------------TIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT---CSS-CCGG--------------GGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc---ccC-CCCc--------------eeccceeeEecChHHHHHHHHHhcccccc
Confidence 46899999999999999999743210 000 0011 1111111111
Q ss_pred --ecCeEEEEEcCCCCCCc-------HHHHHHHHHhcCeEEEEEeCCC
Q 008294 152 --WNKHRINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 152 --~~~~~i~liDTPG~~~f-------~~~~~~~l~~~D~~ilVvda~~ 190 (571)
+.+..++||||||+.++ .......++.+|++++|+|+.+
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 13467999999999774 3456778999999999999985
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=104.71 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhhhhhhce---eEeeceE-EE------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQEQERGI---TITSAAT-TT------------ 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~e~~~g~---t~~~~~~-~~------------ 150 (571)
+.++|+++|++|+|||||+++|+...........+ +.+. ..|....+. .|. .+..... .+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA-KFDAERMEK-HGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT-HHHHHHHHT-TTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC-CccHHHHHh-cCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 57899999999999999999999654332222222 1221 111111111 111 1110000 00
Q ss_pred eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+..+.++||+|....... .-...+..+.|+|+..+...... .....+.|.++|+||+|+..
T Consensus 115 ~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHH
T ss_pred hcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCc
Confidence 012347999999995321100 01234667888887543322111 11224689999999999754
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-09 Score=110.40 Aligned_cols=217 Identities=12% Similarity=0.115 Sum_probs=117.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc----CCcceeeeeecCcc-cccch-hhhhhhceeEeeceE-------------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT----GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT------------- 148 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~----g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~------------- 148 (571)
.+.++|+++|+.|+||||++..|.+.. |........+.... ..+.. ......|+.+.....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999997443 32222222222111 00100 012223443322110
Q ss_pred EEeecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccc
Q 008294 149 TTYWNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG 221 (571)
Q Consensus 149 ~~~~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~ 221 (571)
.+.+.++.+.||||||...+....... +...|.+++|+|+..|.. ......... .++++ -+|+||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 111257899999999987654444433 335689999999987632 222222222 13553 47999999743
Q ss_pred cchhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHH--HHHHHHHH
Q 008294 222 ANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEY--RSQMIETI 299 (571)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~l~e~~ 299 (571)
.. ..+..+...++..... ++.+.....+ ..|+ |..+.+..... ...|+|.+
T Consensus 255 -~~-g~~l~i~~~~~~Pi~~----iG~ge~v~dl--------~~f~-------------p~~~a~~l~g~gD~~~Lie~a 307 (433)
T 2xxa_A 255 -RG-GAALSIRHITGKPIKF----LGVGEKTEAL--------EPFH-------------PDRIASRILGMGDVLSLIEDI 307 (433)
T ss_dssp -CC-THHHHHHHHHCCCEEE----EECSSSSSCE--------EECC-------------HHHHHHHHHCCCTTHHHHHHH
T ss_pred -cH-HHHHHHHHHHCCCeEE----EecCCCchhh--------hhcC-------------hHHHHHHHhCccchHHHHHHH
Confidence 22 2344666666653321 1222221111 1111 12222221111 22333333
Q ss_pred h-----hcCHHHHHHHhcCCCCCHHHHHHHHHhhcccCcc
Q 008294 300 V-----ELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSF 334 (571)
Q Consensus 300 ~-----~~~~~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~ 334 (571)
. +.+++++++|++|.+++.+++.+.+++....+.+
T Consensus 308 ~~~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 308 ESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred HHhhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 2 3468899999998899999999999987766554
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-08 Score=103.36 Aligned_cols=215 Identities=16% Similarity=0.133 Sum_probs=102.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCcc-cccc-hhhhhhhceeEeece-------------EEE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTA-TMDW-MEQEQERGITITSAA-------------TTT 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~-~~d~-~~~e~~~g~t~~~~~-------------~~~ 150 (571)
+...|+++|+.|+||||++..|... .|........+.... ..+. .......|+.+.... ..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999633 222211111111100 0000 000111233221110 001
Q ss_pred eecCeEEEEEcCCCCCC------cHHHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 151 YWNKHRINIIDTPGHVD------FTLEVERALR--VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~------f~~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+.++.+.||||||... +..++....+ ..|.+++|+|+..|.. ...........--+..+|+||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEecccccc-
Confidence 12478899999999644 3334333222 3489999999987633 22333444434356789999999752
Q ss_pred chhhhHHHHHHHhCCcceeeeccCCCCCCcceeeecccceeEEecCCCCCceeeeec-ccHHHHH------HHHHHHHHH
Q 008294 223 NFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYED-IPANLQK------MAQEYRSQM 295 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~pi~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~------~~~~~~~~l 295 (571)
.... .-++....+..... ++.+.+.. .+.. .|+.+.+ ....+++.+
T Consensus 253 ~~G~-als~~~~~g~Pi~f----ig~Ge~v~----------------------dL~~f~p~~~~~~llg~gd~~~l~e~~ 305 (433)
T 3kl4_A 253 KGGG-ALSAVVATGATIKF----IGTGEKID----------------------ELETFNAKRFVSRILGMGDIESILEKV 305 (433)
T ss_dssp CHHH-HHHHHHHHTCEEEE----EECCSSSS----------------------CEEECCHHHHHHHHHCSSHHHHHHHHH
T ss_pred cchH-HHHHHHHHCCCEEE----EECCCChH----------------------hCccCCHHHHHHHhcCCchHHHHHHHH
Confidence 2222 33333344542211 11122211 1112 2334444 234445555
Q ss_pred HHHHhhcC-HHHHHHHhcCC-CCCHHHHHHHHHhhcccCc
Q 008294 296 IETIVELD-DEAMESYLEGN-EPDEETIKKLIRKGTIAGS 333 (571)
Q Consensus 296 ~e~~~~~~-~~l~e~~l~~~-~~~~~~l~~~l~~~~~~~~ 333 (571)
.|.+-+.+ ++++++|.+|+ +++-+++.+.+++....|.
T Consensus 306 ~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg~ 345 (433)
T 3kl4_A 306 KGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGP 345 (433)
T ss_dssp HHC-------------------CCHHHHHHHHHHHHHCCS
T ss_pred HHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 55554444 67999999997 8999999998887665554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=106.27 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--eEEEEEcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK--HRINIIDTP 163 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~liDTP 163 (571)
....+++++|+|+.|+|||||+|.|+ |... .|..... ...+.+.......+...+ ..++++|+|
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~---G~~l------~g~~~~~-----~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~ 103 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLF---NTKF------EGEPATH-----TQPGVQLQSNTYDLQESNVRLKLTIVSTV 103 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHH---TSCC------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEE
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHh---Cccc------cCCcCCC-----CCccceEeeEEEEeecCccccccchhhhh
Confidence 34456789999999999999999996 3211 0100000 011222221111111112 268999999
Q ss_pred CCCCcH--------------HHHHHHHHh-------------c--C-eEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEE
Q 008294 164 GHVDFT--------------LEVERALRV-------------L--D-GAICLFDSVAGVEPQSETVWRQADKYGVPRICF 213 (571)
Q Consensus 164 G~~~f~--------------~~~~~~l~~-------------~--D-~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivv 213 (571)
|+.+.. ..+..++.. + | ++++++|+.+++...+.++++.+. .++|+|+|
T Consensus 104 ~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~V 182 (427)
T 2qag_B 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPI 182 (427)
T ss_dssp CCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEE
T ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEE
Confidence 987531 111122211 1 2 467788999999999988888776 78999999
Q ss_pred EecCCcccc-chhhhHHHHHHHhCCc
Q 008294 214 VNKMDRLGA-NFFRTRDMIVTNLGAK 238 (571)
Q Consensus 214 iNK~D~~~~-~~~~~~~~i~~~l~~~ 238 (571)
+||+|.... +.....+.|++.+...
T Consensus 183 i~KtD~Lt~~E~~~l~~~I~~~L~~~ 208 (427)
T 2qag_B 183 IAKADAISKSELTKFKIKITSELVSN 208 (427)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHBTT
T ss_pred EcchhccchHHHHHHHHHHHHHHHHc
Confidence 999998764 3556666777655443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-09 Score=113.80 Aligned_cols=130 Identities=11% Similarity=0.148 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC-Cc-ceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG-RN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g-~~-~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++|+++|.+|+|||||+|+|+.... .. ....+. .+|+|.......+ +..+.++||||..+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~--------------~~gtT~~~~~~~~---~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY--------------FPGTTLDMIEIPL---ESGATLYDTPGIINH 225 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE--------------CTTSSCEEEEEEC---STTCEEEECCSCCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecC--------------CCCeEEeeEEEEe---CCCeEEEeCCCcCcH
Confidence 5899999999999999999984410 00 000111 1355555443332 224899999997643
Q ss_pred H-------HHHHHHH---HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhHHHHHHHhCC
Q 008294 169 T-------LEVERAL---RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (571)
Q Consensus 169 ~-------~~~~~~l---~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (571)
. .+....+ ...|.+++++|+...........+..+...++|+++++||+|.... +.....+.+++.+|.
T Consensus 226 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 226 HQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 1 2233334 6679999999995321111111133344567899999999998753 466777788888886
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=96.56 Aligned_cols=85 Identities=13% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
.++||.+.|..++. +.|++..|||.+|++++||.|...+.+...+|++|+..+ +++++|.|||++++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD----VETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS----SCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC----EEeEEECCCCEEEEEEcCCCH
Confidence 36899999999886 579999999999999999999999988888999887554 78999999999999 7775
Q ss_pred -CccccceecCCCCc
Q 008294 463 -DTITGETLCDADHP 476 (571)
Q Consensus 463 -~~~~Gdtl~~~~~~ 476 (571)
++..||+||+++.+
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58899999998765
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-09 Score=112.29 Aligned_cols=132 Identities=9% Similarity=0.119 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
++|+++|.+|+|||||+|+|+...... ..... ....+|+|.......+. ..+.++||||..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~------------~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVIT------------TSHFPGTTLDLIDIPLD---EESSLYDTPGIINHH 225 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCE------------EECCC----CEEEEESS---SSCEEEECCCBCCTT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccccee------------cCCCCCeecceEEEEec---CCeEEEeCCCcCcHH
Confidence 579999999999999999998542111 00000 01123556554443332 23899999998653
Q ss_pred ------HHHHHHH---HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc-chhhhHHHHHHHhCC
Q 008294 169 ------TLEVERA---LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA-NFFRTRDMIVTNLGA 237 (571)
Q Consensus 169 ------~~~~~~~---l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~-~~~~~~~~i~~~l~~ 237 (571)
..+.... ....+.+++++|+...........+..+...++|+++|+||+|.... +.....+.+++.+|.
T Consensus 226 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 226 QMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp SGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred HHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 1222222 24568899999985321111111123344567899999999998764 466677778888886
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.1e-08 Score=96.22 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeec-CcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHE-GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~-g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.+++++|+.|+|||||+|.|+..... ..|.+.. |... ......+++....... .-...++++|+||+.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i---~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKI---PKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C---CCCCSCCEEEESCC-------CCEEEEECCCC--CCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCccc---CcceeeeeeEEEeecC---CCcCCceEEechhhhhhc
Confidence 58999999999999999999733211 1122110 1000 0000011111111100 012368999999975420
Q ss_pred ---------HH-----HHHHH--------------HhcCeEEEEEeCC-CCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 ---------LE-----VERAL--------------RVLDGAICLFDSV-AGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 ---------~~-----~~~~l--------------~~~D~~ilVvda~-~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.. ....+ ..++++++++|.. +|+.+.+.+.++.+... +++++|+||+|..
T Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 75 NNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp BCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 01 11111 1247888999854 89999999999888877 9999999999987
Q ss_pred ccc-hhhhHHHHHHHh
Q 008294 221 GAN-FFRTRDMIVTNL 235 (571)
Q Consensus 221 ~~~-~~~~~~~i~~~l 235 (571)
..+ .....+.+++.+
T Consensus 154 t~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 154 TLEEKSEFKQRVRKEL 169 (270)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 643 444555555544
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-07 Score=95.87 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcc-eeeeeecCcccccchhhhhhhceeEeeceEEEeec-CeEEEEEcCCCCCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNY-KIGEVHEGTATMDWMEQEQERGITITSAATTTYWN-KHRINIIDTPGHVD 167 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~-~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~liDTPG~~~ 167 (571)
...++++|+.|+|||||+|.|+ |... ..|++..+. .+.. ..+. .+... ...++++|+||+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~---Gl~~p~~GsI~~~g-----~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLR---GIGNEEEGAAKTGV-----VEVT-MERH-------PYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH---TCCTTSTTSCCCCC----------CCCE-------EEECSSCTTEEEEECCCGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHh---CCCCccCceEEECC-----eecc-eeEE-------eccccccCCeeehHhhcccc
Confidence 4589999999999999999997 3221 122221111 0000 0111 11111 13689999999742
Q ss_pred c---HHHHHHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 168 F---TLEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 168 f---~~~~~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
- ..+.... +...|..++ +++.. .+.+...+.+.+...+.|+++|+||.|+.
T Consensus 133 ~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 133 TNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp SSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred hHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 1 2222222 233355554 77755 46777778888888899999999999974
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-08 Score=103.40 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=61.1
Q ss_pred eeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCc-----------hhHHHHHHHHHh----
Q 008294 141 ITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK---- 205 (571)
Q Consensus 141 ~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~-----------~~~~~~~~~~~~---- 205 (571)
.|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++-.+ ......+..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 34444555667788999999999999999999999999999999999986311 122233333333
Q ss_pred cCCCeEEEEecCCccc
Q 008294 206 YGVPRICFVNKMDRLG 221 (571)
Q Consensus 206 ~~~p~ivviNK~D~~~ 221 (571)
.++|+++|+||+|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 4789999999999853
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-08 Score=103.02 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=77.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccchhh-hhhhceeEeece--------E----EEe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWMEQ-EQERGITITSAA--------T----TTY 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~~~~-e~~~g~t~~~~~--------~----~~~ 151 (571)
..++|+++|.+|+||||+++.|.... |........+... ...+.... ....|+.+.... . --.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999997432 1111111111110 00011000 011122111110 0 000
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHHH------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-C-eEEEEecCCccccc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERAL------RVLDGAICLFDSVAGVEPQSETVWRQADKYGV-P-RICFVNKMDRLGAN 223 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~l------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-p-~ivviNK~D~~~~~ 223 (571)
+.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+... ..+ | ..+|+||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~-~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAFK-EAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHH-TTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHHh-hcccCCeEEEEeCCCCcc-c
Confidence 2568899999999876533333322 24699999999987642 222222222 236 6 788999999753 2
Q ss_pred hhhhHHHHHHHhCCc
Q 008294 224 FFRTRDMIVTNLGAK 238 (571)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (571)
....+ .+...++..
T Consensus 254 ~g~~l-~~~~~~~~p 267 (432)
T 2v3c_C 254 GGGAL-SAVAETKAP 267 (432)
T ss_dssp THHHH-HHHHHSSCC
T ss_pred hHHHH-HHHHHHCCC
Confidence 22233 366666653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-08 Score=101.52 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=49.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec---------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN--------------- 153 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------- 153 (571)
...+|+++|.+|+|||||+|+|. +...... ...++|+......+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Lt---g~~~~~~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~ 82 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLT---NSQASAE---------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPAS 82 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHH---C----------------------------CCSEEEEECCCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCcccc---------------CCCccccCceeEEEEECCccceeeccccCccc
Confidence 34679999999999999999996 2211111 01223333333333322
Q ss_pred --CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 008294 154 --KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 154 --~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~ 190 (571)
...+++|||||+..+.. .....++.+|++++|+|+.+
T Consensus 83 ~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 83 KIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34699999999987654 56778999999999999974
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-06 Score=89.02 Aligned_cols=145 Identities=15% Similarity=0.028 Sum_probs=76.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc--cccchhhhhhhceeEeeceE-------------EE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA--TMDWMEQEQERGITITSAAT-------------TT 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~--~~d~~~~e~~~g~t~~~~~~-------------~~ 150 (571)
+...|+++|.+|+||||++..|.... |........+.... +..........|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997432 22111111111100 00000011122332221100 00
Q ss_pred eecCeEEEEEcCCCCCCcHHHHH------HHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccch
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~------~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~ 224 (571)
...++.+.||||||......... .....+|.+++|+|+..|.. ...........--+..+|+||+|....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSCSS--
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCccc--
Confidence 11458999999999655332222 22334699999999987532 233334444343455689999997532
Q ss_pred hhhHHHHHHHhCC
Q 008294 225 FRTRDMIVTNLGA 237 (571)
Q Consensus 225 ~~~~~~i~~~l~~ 237 (571)
......+....+.
T Consensus 255 gG~~ls~~~~~g~ 267 (443)
T 3dm5_A 255 GGGALSAVAATGA 267 (443)
T ss_dssp HHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHCC
Confidence 1223344444554
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-08 Score=101.05 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=53.2
Q ss_pred eEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC---------c--hhHHHHHHHHHh----c
Q 008294 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV---------E--PQSETVWRQADK----Y 206 (571)
Q Consensus 142 t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~---------~--~~~~~~~~~~~~----~ 206 (571)
|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++-- . ......|..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 444444556678899999999999999999999999999999999998721 1 112233444332 3
Q ss_pred CCCeEEEEecCCccc
Q 008294 207 GVPRICFVNKMDRLG 221 (571)
Q Consensus 207 ~~p~ivviNK~D~~~ 221 (571)
++|+++|+||+|+..
T Consensus 268 ~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 268 NVSIILFLNKTDLLE 282 (362)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCCEEEEEEChhhhh
Confidence 789999999999853
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=93.19 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=50.5
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHH-HHHHHhcCCCeEEEEecCCccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETV-WRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~-~~~~~~~~~p~ivviNK~D~~~ 221 (571)
.+++||| +.+|......+++.+|++|+|+|+++.. ....... +..+...++|+++|+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 7899999 8888777778899999999999998754 3333333 3445567899999999999864
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-07 Score=93.49 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred hceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCC-------CCCch----hHHHHHHHHHh--
Q 008294 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-------AGVEP----QSETVWRQADK-- 205 (571)
Q Consensus 139 ~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~-------~g~~~----~~~~~~~~~~~-- 205 (571)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-.. .....|..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 344555556667778999999999999999999999999999999999765 21111 12233443332
Q ss_pred --cCCCeEEEEecCCcccc
Q 008294 206 --YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 206 --~~~p~ivviNK~D~~~~ 222 (571)
.++|+++|+||+|+...
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp GGTTCEEEEEEECHHHHHH
T ss_pred ccCCceEEEEEECchhhhh
Confidence 47899999999998643
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-07 Score=93.78 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=62.5
Q ss_pred hceeEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC---------CCch--hHHHHHHHHHh--
Q 008294 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA---------GVEP--QSETVWRQADK-- 205 (571)
Q Consensus 139 ~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~---------g~~~--~~~~~~~~~~~-- 205 (571)
+..|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++ .... .....|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3445556666777789999999999999999999999999999999999972 1111 12233433332
Q ss_pred --cCCCeEEEEecCCccc
Q 008294 206 --YGVPRICFVNKMDRLG 221 (571)
Q Consensus 206 --~~~p~ivviNK~D~~~ 221 (571)
.++|+++|+||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 4789999999999864
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-06 Score=80.69 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=37.3
Q ss_pred EEEEEcCC------CCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH----HHHHh----cCCCeEEEEecC-Ccc
Q 008294 156 RINIIDTP------GHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW----RQADK----YGVPRICFVNKM-DRL 220 (571)
Q Consensus 156 ~i~liDTP------G~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~----~~~~~----~~~p~ivviNK~-D~~ 220 (571)
++..-.+| |+..+...+..++..+|++|+|||+++......++-+ ..+.. .++|++|+.||. |++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45555666 6777778899999999999999999865322233222 22221 478999999996 665
Q ss_pred cc
Q 008294 221 GA 222 (571)
Q Consensus 221 ~~ 222 (571)
++
T Consensus 177 ~A 178 (227)
T 3l82_B 177 KR 178 (227)
T ss_dssp CB
T ss_pred CC
Confidence 44
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=9e-07 Score=92.25 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=59.4
Q ss_pred eEeeceEEEeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC----------CCch-hHHHHHHHHHh----c
Q 008294 142 TITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----------GVEP-QSETVWRQADK----Y 206 (571)
Q Consensus 142 t~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~----------g~~~-~~~~~~~~~~~----~ 206 (571)
|+......+..++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-.. .....+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444445566788999999999999999999999999999999999986 1111 12223333332 3
Q ss_pred CCCeEEEEecCCccc
Q 008294 207 GVPRICFVNKMDRLG 221 (571)
Q Consensus 207 ~~p~ivviNK~D~~~ 221 (571)
++|+++|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 689999999999853
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=90.38 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=57.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecC--------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNK-------------- 154 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------------- 154 (571)
+...++++|++|+|||||+|+|...... ..+. ..++|+......+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a--~~~~---------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLG--NPAN---------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT--STTC---------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc--cccC---------------CCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 3468999999999999999999732110 1100 12234443333333332
Q ss_pred ---eEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 155 ---HRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 155 ---~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
..+.+|||||... +.......++.+|.+++|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999654 34567788899999999999975
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-06 Score=85.62 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-ccc-chhhhhhhceeEeece-------------EEEe
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMD-WMEQEQERGITITSAA-------------TTTY 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-~~d-~~~~e~~~g~t~~~~~-------------~~~~ 151 (571)
...|+++|..|+||||++..|.... |........+.... ..+ ........|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999997332 22211111111110 000 0000112233322110 0011
Q ss_pred ecCeEEEEEcCCCCCC--cHHHHH------HHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 152 WNKHRINIIDTPGHVD--FTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~--f~~~~~------~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
+.++.+.||||||... ...... .....+|.+++|+|+..+ .......+.+.. .++ ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 2578899999999877 433222 345578999999999764 233333333333 477 668999999743
Q ss_pred chhhhHHHHHHHhCC
Q 008294 223 NFFRTRDMIVTNLGA 237 (571)
Q Consensus 223 ~~~~~~~~i~~~l~~ 237 (571)
.. ..+..+...++.
T Consensus 254 ~~-g~~~~~~~~~~~ 267 (297)
T 1j8m_F 254 KG-GGALSAVAATGA 267 (297)
T ss_dssp TH-HHHHHHHHTTTC
T ss_pred ch-HHHHHHHHHHCc
Confidence 22 223345555554
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=75.38 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=83.9
Q ss_pred eEEEEE-cCCCCchHHHHHHHHHh---cCCcceeeeeecCcccccchhhhhhhceeEeeceE-EE------eecCeEEEE
Q 008294 91 RNIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT-TT------YWNKHRINI 159 (571)
Q Consensus 91 ~~I~iv-G~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~-~~------~~~~~~i~l 159 (571)
+.|+|+ +..|+||||+.-.|... .|...-.-..++.....++... ...+..+-.... .+ ....+.+.|
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA-GKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT-SCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc-CCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 467777 67889999999988632 3322222222222222222111 011111100000 00 014588999
Q ss_pred EcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCCeEEEEecCCccccchhhhHHHHHHH
Q 008294 160 IDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-----GVPRICFVNKMDRLGANFFRTRDMIVTN 234 (571)
Q Consensus 160 iDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~~~~~~~~~i~~~ 234 (571)
||||+.. ......++..+|.+|+++.....- ......++.+... ++++.+|+|++|.......++.+.++ .
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~-~ 156 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIK-D 156 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHH-H
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHH-H
Confidence 9999977 356778889999999999987766 6667777777654 36778999999964433334444443 3
Q ss_pred hCCc
Q 008294 235 LGAK 238 (571)
Q Consensus 235 l~~~ 238 (571)
+|..
T Consensus 157 ~~~~ 160 (206)
T 4dzz_A 157 TGVK 160 (206)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6643
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.6e-07 Score=90.82 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC-------C--Cch--hHHHHHHHHHh----cCCCeEEEEecC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA-------G--VEP--QSETVWRQADK----YGVPRICFVNKM 217 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~-------g--~~~--~~~~~~~~~~~----~~~p~ivviNK~ 217 (571)
+...+.+|||+|+..|...+..+++.++++|+|+|.++ . ... .....+..+.. .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999999999999999999871 1 111 12223333332 478999999999
Q ss_pred Cccc
Q 008294 218 DRLG 221 (571)
Q Consensus 218 D~~~ 221 (571)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9853
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.9e-06 Score=84.63 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=43.5
Q ss_pred EEcCCCCC-CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 159 IIDTPGHV-DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~-~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+-+.|||. ....++...+..+|+++.|+|+.++.......+-+.+ .++|.++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 44679997 4677889999999999999999987766533332222 5799999999999865
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-06 Score=94.97 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=60.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE---eecCeEEEEEcCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT---YWNKHRINIIDTP 163 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~---~~~~~~i~liDTP 163 (571)
..+...|+|+|.+|+|||||+|+|+ |..... .+ .++ . ++.|........ ...+..+.|+|||
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~---g~~~~~-~~-~~t-t---------~~~T~gi~~~~~~~~~~~~~~i~LiDTp 99 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLA---GKKKGF-SL-GST-V---------QSHTKGIWMWCVPHPKKPGHILVLLDTE 99 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHT---TCSSCS-CC-CCS-S---------SCCCCSEEEEEEECSSSTTCEEEEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHc---CCCCcc-cc-CCC-C---------CCceeEEEEeecccccCCCceEEEecCC
Confidence 4567899999999999999999996 321110 10 111 0 111211111111 1256789999999
Q ss_pred CCCCcHH------HHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHH
Q 008294 164 GHVDFTL------EVERALRVLDGAICLFDSVAGVEPQSETVWRQAD 204 (571)
Q Consensus 164 G~~~f~~------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~ 204 (571)
|..+... ....++...-..++|+|+..++..+....+..+.
T Consensus 100 Gi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 100 GLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp CBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred CcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 9875322 1222223211226788888888888877665544
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=78.43 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=42.1
Q ss_pred CCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHH----HHHHH---H-hcCCCeEEEEec-CCcccc
Q 008294 163 PGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET----VWRQA---D-KYGVPRICFVNK-MDRLGA 222 (571)
Q Consensus 163 PG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~----~~~~~---~-~~~~p~ivviNK-~D~~~~ 222 (571)
.|+..+...+..++..+|++|+|||+++.......+ +...+ . ..++|++|+.|| -|++++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 477888999999999999999999998654322222 11222 1 258999999997 587654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.9e-06 Score=82.71 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHH-HHHHHHHhcCCCeEEEEecCCccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGV-EPQSE-TVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~-~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+..+......+++.+|++++|+|+.+.. ..... ..+..+...++|.++|+||+|+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 3444333335788999999999998764 44332 334456668999999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=81.95 Aligned_cols=63 Identities=17% Similarity=0.016 Sum_probs=41.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 157 i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+.-+|+| +++|........+.+|++++|+|+.+.......++.+.+ .++|+++|+||+|+...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 4444554 778888888888999999999999875543322222222 27899999999998653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.87 E-value=8.6e-05 Score=75.22 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=74.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCccc-ccchhhhh----hhceeEe-eceEE---------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT-MDWMEQEQ----ERGITIT-SAATT--------- 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~-~d~~~~e~----~~g~t~~-~~~~~--------- 149 (571)
.....|+++|..|+||||++..|... .|........+..... .+....-. ..++.+- .....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 45678999999999999999988632 2211111111110000 00000000 2233322 11000
Q ss_pred -E---eecCeEEEEEcCCCCCCcHHHHHHHHH------------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EE
Q 008294 150 -T---YWNKHRINIIDTPGHVDFTLEVERALR------------VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-IC 212 (571)
Q Consensus 150 -~---~~~~~~i~liDTPG~~~f~~~~~~~l~------------~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-iv 212 (571)
+ ...++.+.||||||...........+. .+|.+++|+|+..+ .......+.... ..++ =+
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~Gv 259 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGI 259 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEE
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEE
Confidence 0 015789999999997664333222221 26899999999754 222222222221 2333 37
Q ss_pred EEecCCccccchhhhHHHHHHHhCCc
Q 008294 213 FVNKMDRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 213 viNK~D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|+||+|.... . ..+..+...++..
T Consensus 260 Vltk~d~~~~-~-g~~~~~~~~~~~P 283 (320)
T 1zu4_A 260 ILTKMDSTSK-G-GIGLAIKELLNIP 283 (320)
T ss_dssp EEECGGGCSC-T-THHHHHHHHHCCC
T ss_pred EEeCCCCCCc-h-hHHHHHHHHHCcC
Confidence 8999996432 2 3445566666653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.86 E-value=8.6e-05 Score=78.88 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=72.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCccccc--c--hh-hhhhhceeEeeceEEEe----------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMD--W--ME-QEQERGITITSAATTTY---------- 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d--~--~~-~e~~~g~t~~~~~~~~~---------- 151 (571)
....|+|+|..|+|||||++.|...... ..|.+ ..+..+.. . .. ....+++.+........
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 4568999999999999999998632110 01111 11111110 0 00 01123332221110000
Q ss_pred ---ecCeEEEEEcCCCCCCcHHH-------HHHHHHh-----cCeEEEEEeCCCCCchhHHHHHHHHHh-cCCCeEEEEe
Q 008294 152 ---WNKHRINIIDTPGHVDFTLE-------VERALRV-----LDGAICLFDSVAGVEPQSETVWRQADK-YGVPRICFVN 215 (571)
Q Consensus 152 ---~~~~~i~liDTPG~~~f~~~-------~~~~l~~-----~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~p~ivviN 215 (571)
..++.+.||||+|....... +.+.++. .+-++||+|+..|.. .....+.+.. .++ ..+|+|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEEEE
Confidence 14678999999998543222 2222221 356899999987622 2223333332 333 457899
Q ss_pred cCCccccchhhhHHHHHHHhCC
Q 008294 216 KMDRLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 216 K~D~~~~~~~~~~~~i~~~l~~ 237 (571)
|+|-. ..-..+-.+...++.
T Consensus 447 KLD~t--akgG~~lsi~~~~~~ 466 (503)
T 2yhs_A 447 KLDGT--AKGGVIFSVADQFGI 466 (503)
T ss_dssp CGGGC--SCCTHHHHHHHHHCC
T ss_pred cCCCc--ccccHHHHHHHHHCC
Confidence 99953 223344555556664
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.6e-05 Score=79.19 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
.+..+|+++|.+|+|||||+|+|+ |...... ....|+|.......+ +..+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~---~~~~~~~--------------~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA---KKNIAKT--------------GDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH---TSCCC--------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHh---cCceeec--------------CCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 345789999999999999999997 2211111 112345555443322 45799999999864
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00012 Score=69.26 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=81.0
Q ss_pred EEEEE-cCCCCchHHHHHHHHHh---cCCcceeeeeecCcccccchhhhhhhcee--Eeec-eEEEeecCeEEEEEcCCC
Q 008294 92 NIGIM-AHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATMDWMEQEQERGIT--ITSA-ATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 92 ~I~iv-G~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~~d~~~~e~~~g~t--~~~~-~~~~~~~~~~i~liDTPG 164 (571)
.|+|+ +..|+||||+.-.|... .| ..-.-..+.......+... .... +-.. ...-....+.+.+||||+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~---~~l~~~vi~~~~l~~l~~~yD~viiD~p~ 77 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR---GSLPFKVVDERQAAKYAPKYQNIVIDTQA 77 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH---SCCSSEEEEGGGHHHHGGGCSEEEEEEEC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC---CCCCcceeCHHHHHHhhhcCCEEEEeCCC
Confidence 45554 77899999999988633 23 2222222232222222111 0000 0000 000012568899999999
Q ss_pred C-CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc-CCCeEEEEecCCccc-cchhhhHHHHHHHhCCc
Q 008294 165 H-VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY-GVPRICFVNKMDRLG-ANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 165 ~-~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~p~ivviNK~D~~~-~~~~~~~~~i~~~l~~~ 238 (571)
. ... .+..++..+|.+|+++.+...-.......++.+... +.+..+|+|+.|... ....++.+.+++ +|..
T Consensus 78 ~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 78 RPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp CCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred CcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 7 543 456788899999999987643334455566666663 678889999999754 334445555554 6643
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=4.6e-05 Score=77.42 Aligned_cols=141 Identities=17% Similarity=0.050 Sum_probs=72.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCcccccchhh------hhhhceeEeeceEEE-------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGTATMDWMEQ------EQERGITITSAATTT------- 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~~~~d~~~~------e~~~g~t~~~~~~~~------- 150 (571)
.+...++++|+.|+|||||++.|... .|.+.-.+. + ....... -...|+.+.......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~-D----~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS-D----TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-C----CSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee-c----ccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34568999999999999999998632 121111111 0 0000011 122233221110000
Q ss_pred ------eecCeEEEEEcCCCCCCc----HHHHHH--HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 151 ------YWNKHRINIIDTPGHVDF----TLEVER--ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 151 ------~~~~~~i~liDTPG~~~f----~~~~~~--~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++.+.++||+|.... ..++.. ..-..|-.++++|+..+. +.....+.+.+.--...+++||+|
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 013566889999997442 333222 122358999999987763 333333433332234478899999
Q ss_pred ccccchhhhHHHHHHHhCC
Q 008294 219 RLGANFFRTRDMIVTNLGA 237 (571)
Q Consensus 219 ~~~~~~~~~~~~i~~~l~~ 237 (571)
.. +..-. +-.+....+.
T Consensus 280 ~~-a~~G~-~l~~~~~~~~ 296 (328)
T 3e70_C 280 AD-ARGGA-ALSISYVIDA 296 (328)
T ss_dssp GC-SCCHH-HHHHHHHHTC
T ss_pred Cc-cchhH-HHHHHHHHCC
Confidence 63 22222 3344444554
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.75 E-value=6.7e-05 Score=82.84 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=40.9
Q ss_pred CeEEEEEcCCCCCCc---------HHHHHHHH----Hhc-CeEEEEEeCCCCCch-hHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF---------TLEVERAL----RVL-DGAICLFDSVAGVEP-QSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f---------~~~~~~~l----~~~-D~~ilVvda~~g~~~-~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...+.|+|.||.... ...+...+ ..- ..+++++++...... ....+.+.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 456999999986531 12222222 222 566667776544332 234455555566889999999999
Q ss_pred cccc
Q 008294 219 RLGA 222 (571)
Q Consensus 219 ~~~~ 222 (571)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9754
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00043 Score=67.85 Aligned_cols=86 Identities=8% Similarity=-0.061 Sum_probs=60.9
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc------cch-
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG------ANF- 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~------~~~- 224 (571)
..+.+.|||||+..........++..+|.+|+|+.............++.++..+++.+ +|+|+.|... ...
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 56889999999976543333334457899999998876555566677777888889987 8999998421 111
Q ss_pred -hhhHHHHHHHhCCc
Q 008294 225 -FRTRDMIVTNLGAK 238 (571)
Q Consensus 225 -~~~~~~i~~~l~~~ 238 (571)
...++++.+.+|..
T Consensus 207 ~~~~~~~~~~~~g~~ 221 (262)
T 2ph1_A 207 GEGKGESLAKKYNIG 221 (262)
T ss_dssp CCCCHHHHHHHTTCS
T ss_pred cccHHHHHHHHcCCC
Confidence 34577888888764
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.5e-05 Score=79.74 Aligned_cols=54 Identities=11% Similarity=-0.079 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh--cCCCeEEEEecCCcccc
Q 008294 165 HVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 165 ~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
.++|...+....+.+|++++|+|+.+.... ....+.+ .++|+++|+||+|+...
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~----~~~~l~~~~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGS----WLPGLHRFVGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHH----CCTTHHHHSSSSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCccc----HHHHHHHHhCCCcEEEEEEChhcCCc
Confidence 456777787888888999999999863211 1111222 37899999999998643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=78.16 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=39.3
Q ss_pred CCCCCc-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 163 PGHVDF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 163 PG~~~f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
|||... ..++...+..+|+++.|+|+.++.......+ ..+ ++|.++|+||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCC
Confidence 898754 5688999999999999999997765543221 112 899999999999865
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=59.73 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC-ceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG-KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~-~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
..|....|.+.+.-=+ |.+..|||.+|+|++|+.| +.+ ...+|.+|.. ..+++++|.+||.|++ .|..
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~ 103 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIG 103 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCcc
Confidence 4566677777443334 8889999999999999999 333 4556666654 2378999999999998 4443
Q ss_pred Cccccceec
Q 008294 463 DTITGETLC 471 (571)
Q Consensus 463 ~~~~Gdtl~ 471 (571)
++..||+|.
T Consensus 104 ~I~~GdVLy 112 (116)
T 1xe1_A 104 KVKKGDVLE 112 (116)
T ss_dssp CCCTTCEEE
T ss_pred ccCCCcEEE
Confidence 677788775
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00027 Score=74.17 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=74.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCcc-cccch-hhhhhhceeEeeceE-----E--------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGTA-TMDWM-EQEQERGITITSAAT-----T--------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~~-~~d~~-~~e~~~g~t~~~~~~-----~--------~ 150 (571)
....|+++|..|+||||++..|.... |........+.... ..+.. ......|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997332 21111111111110 00000 011122333222100 0 0
Q ss_pred eecCeEEEEEcCCCCCCcHHHHH------HHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccc
Q 008294 151 YWNKHRINIIDTPGHVDFTLEVE------RALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~~------~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (571)
...++.+.||||||......... ......|.+++|+|+..+. ......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 12568899999999765422222 1223579999999997652 22222222222 244 467899999642 2
Q ss_pred hhhhHHHHHHHhCCc
Q 008294 224 FFRTRDMIVTNLGAK 238 (571)
Q Consensus 224 ~~~~~~~i~~~l~~~ 238 (571)
.. ....+...+|..
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233455566653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00028 Score=70.87 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCc-ccccch-hhhhhhceeEeece-------------EE
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGT-ATMDWM-EQEQERGITITSAA-------------TT 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~-~~~d~~-~~e~~~g~t~~~~~-------------~~ 149 (571)
.+...|+++|+.|+||||++..|... .|........+... ...+.. ..-...|+.+-... ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34568999999999999999998632 22111111111100 000000 00112233321100 00
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHH-------HHH-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVER-------ALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~-------~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
....++.+.|+||||.......... .+. ..|.+++|+|+..+ .......+...+.--..-+|+||+
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~ 259 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKL 259 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECG
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCC
Confidence 0124678999999997554333222 111 25888999999733 112222222222212235678999
Q ss_pred CccccchhhhHHHHHHHhCCc
Q 008294 218 DRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 218 D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|.. +.. ..+-++...++..
T Consensus 260 D~~-~~g-G~~l~~~~~~~~P 278 (306)
T 1vma_A 260 DGT-AKG-GITLAIARELGIP 278 (306)
T ss_dssp GGC-SCT-THHHHHHHHHCCC
T ss_pred CCc-cch-HHHHHHHHHHCCC
Confidence 963 222 2355666666653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00055 Score=68.71 Aligned_cols=143 Identities=19% Similarity=0.141 Sum_probs=72.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccc---h--hh-hhhhceeEeeceEE----------E-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDW---M--EQ-EQERGITITSAATT----------T- 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~---~--~~-e~~~g~t~~~~~~~----------~- 150 (571)
+...|+++|+.|+|||||++.|....... .|++. .+...... . .. ....++.+-..... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999999996321110 01110 01100000 0 00 01122221111000 0
Q ss_pred --eecCeEEEEEcCCCCCCcHH----HH---HHHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEEe
Q 008294 151 --YWNKHRINIIDTPGHVDFTL----EV---ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFVN 215 (571)
Q Consensus 151 --~~~~~~i~liDTPG~~~f~~----~~---~~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivviN 215 (571)
...+..+.++||+|..+... +. ..++. ..+.+++++|+..+.. ....+..+. ..++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 01345678999999754322 21 11211 2477889999987643 223333333 3344 578899
Q ss_pred cCCccccchhhhHHHHHHHhCCc
Q 008294 216 KMDRLGANFFRTRDMIVTNLGAK 238 (571)
Q Consensus 216 K~D~~~~~~~~~~~~i~~~l~~~ 238 (571)
|.|.. +. ...+-.+...++..
T Consensus 256 h~d~~-a~-gg~~l~i~~~~~~p 276 (304)
T 1rj9_A 256 KLDGT-AK-GGVLIPIVRTLKVP 276 (304)
T ss_dssp CTTSS-CC-CTTHHHHHHHHCCC
T ss_pred CCccc-cc-ccHHHHHHHHHCCC
Confidence 99864 22 23444666667653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=3.6e-05 Score=75.75 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.+++++|.+|+|||||+|+|..... ...+. ..|+|....... -+..+++|||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~--~~~~~---------------~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA--SSVGA---------------QPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc--cccCC---------------CCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 5899999999999999999972111 11111 134454443222 2357899999998763
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00022 Score=69.69 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=55.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH---Hh---cCCCeE-EEEecCCccccchh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA---DK---YGVPRI-CFVNKMDRLGANFF 225 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~---~~---~~~p~i-vviNK~D~~~~~~~ 225 (571)
..+.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+ .. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 4688999999997653 356678889999999988542222223333333 22 256664 88999986544345
Q ss_pred hhHHHHHHHhCCc
Q 008294 226 RTRDMIVTNLGAK 238 (571)
Q Consensus 226 ~~~~~i~~~l~~~ 238 (571)
+..+.+++.+|..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 5677788777653
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00065 Score=67.75 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=57.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh------cCCCeE-EEEecCCccccchh
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK------YGVPRI-CFVNKMDRLGANFF 225 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~------~~~p~i-vviNK~D~~~~~~~ 225 (571)
..+.+.|||||+.... ....++..+|.+|+++.+...-.......+..+.. .+++++ +|+|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 3578999999997653 34567778999999998875444444444444433 266754 78999997554445
Q ss_pred hhHHHHHHHhCC
Q 008294 226 RTRDMIVTNLGA 237 (571)
Q Consensus 226 ~~~~~i~~~l~~ 237 (571)
+.++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 667778887764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00072 Score=67.60 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=71.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCcccc-c-chhhhhhhceeEeece-----EE--------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTATM-D-WMEQEQERGITITSAA-----TT--------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~~-d-~~~~e~~~g~t~~~~~-----~~--------~ 150 (571)
....++++|..|+||||++..|... .|........+...... . ........|+.+-... .. +
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998632 22111111111111000 0 0000112233222110 00 0
Q ss_pred eecCeEEEEEcCCCCCCcH----HHHHHHH--HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccc
Q 008294 151 YWNKHRINIIDTPGHVDFT----LEVERAL--RVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~----~~~~~~l--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (571)
...++.+.|+||||..... .++.... ...|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 0146889999999865432 2221111 247899999998753 222222222222 244 457899999643 2
Q ss_pred hhhhHHHHHHHhCC
Q 008294 224 FFRTRDMIVTNLGA 237 (571)
Q Consensus 224 ~~~~~~~i~~~l~~ 237 (571)
.. .+-++...++.
T Consensus 253 ~g-~~~~~~~~~~~ 265 (295)
T 1ls1_A 253 GG-AALSARHVTGK 265 (295)
T ss_dssp CH-HHHHHHHHHCC
T ss_pred HH-HHHHHHHHHCc
Confidence 22 23344455554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00028 Score=70.62 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=70.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh----cCCcceeeeeecCc-ccccchh-hhhhhceeEeece-------EEEeecCe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY----TGRNYKIGEVHEGT-ATMDWME-QEQERGITITSAA-------TTTYWNKH 155 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~----~g~~~~~g~~~~g~-~~~d~~~-~e~~~g~t~~~~~-------~~~~~~~~ 155 (571)
+...|+++|+.|+||||++..|... .|........+... ...+... .....|+.+.... .--...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999998632 23211111111110 0000000 0011122111000 00012567
Q ss_pred EEEEEcCCCCCCcHHHHHH----HHH--hcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CC-eEEEEecCCccccchhhh
Q 008294 156 RINIIDTPGHVDFTLEVER----ALR--VLDGAICLFDSVAGVEPQSETVWRQADKYG-VP-RICFVNKMDRLGANFFRT 227 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~----~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~p-~ivviNK~D~~~~~~~~~ 227 (571)
.+.|+||||.......... .+. ..|.+++|+|+.++.. .+...+.... ++ .-+|+||+|... ... .
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~~-~~g-~ 257 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDETT-SLG-S 257 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTCS-CCH-H
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCccc-chh-H
Confidence 8999999998765433222 222 2467899999986521 1222222221 22 346779999653 222 2
Q ss_pred HHHHHHHhCC
Q 008294 228 RDMIVTNLGA 237 (571)
Q Consensus 228 ~~~i~~~l~~ 237 (571)
+..+...++.
T Consensus 258 ~~~~~~~~~~ 267 (296)
T 2px0_A 258 VFNILAESKI 267 (296)
T ss_dssp HHHHHHTCSC
T ss_pred HHHHHHHHCc
Confidence 3334444553
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00056 Score=65.95 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=57.8
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.|||||+.... ....++..+|.+|+|+++...-........+.+...+++ +.+|+||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5789999999986553 456778999999999987542233344455566666765 5688999983 2245667
Q ss_pred HHHhCCcceeeecc
Q 008294 232 VTNLGAKPLVVQLP 245 (571)
Q Consensus 232 ~~~l~~~~~~~~~p 245 (571)
.+.++.......+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 77777433333344
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0008 Score=70.93 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeee---eecCcccccchhhhhhhceeEeeceEEEee---cCeEE
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGE---VHEGTATMDWMEQEQERGITITSAATTTYW---NKHRI 157 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~---~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i 157 (571)
..++-.|+|+|..++|||||+|+|+... +.....|. ...+-.+.. ...-..+|+-+......... ....+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceE
Confidence 4568899999999999999999998541 00000000 000000000 00111234333322222211 23679
Q ss_pred EEEcCCCCCCcHH-----HHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHH
Q 008294 158 NIIDTPGHVDFTL-----EVERALR--VLDGAICLFDSVAGVEPQSETVWRQA 203 (571)
Q Consensus 158 ~liDTPG~~~f~~-----~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~ 203 (571)
.|+||||..+-.. ..+.++. .++..| +.....+.....+.+..+
T Consensus 143 vllDTeG~~~~~~~~~~d~~ifal~~lLSs~~I--yN~~~~i~~~~l~~L~~~ 193 (447)
T 3q5d_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQLF 193 (447)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEE--EEESSSCCHHHHHHHHHH
T ss_pred EEEcCCcccccccchhhhHHHHHHHHHHhhHHH--HhhcccccHHHHHHHHHH
Confidence 9999999876432 1233333 356544 444556666666655543
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=62.69 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=57.5
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.|||||+... .....++..+|.+|+|+++...-.......++.+...+.+. -+|+||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999998655 56677889999999999875433334455666666666654 4789999864332 456677
Q ss_pred HHHhCCc
Q 008294 232 VTNLGAK 238 (571)
Q Consensus 232 ~~~l~~~ 238 (571)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 7777753
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=63.80 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=57.4
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.|||||+... .....++..+|.+|+|+.+...-.......++.+...+.+.+ +|+|+.|..... ..++++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHH
Confidence 468899999998665 567778899999999998754333344555666666666554 789999864332 456667
Q ss_pred HHHhCCc
Q 008294 232 VTNLGAK 238 (571)
Q Consensus 232 ~~~l~~~ 238 (571)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 7767653
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00095 Score=54.36 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=61.6
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCce---eecceEEEeccCceeecCeecCCCEEEE--eCCCCcc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTI 465 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~ 465 (571)
.|-|-.+|..+.+|.+|-++|.+|.++.+..+++.+.+.- -++.+|.+.. .+|+++.+|.=|+| .+..++.
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~dik 83 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFNDIK 83 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCSSCS
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccc----cccceECCCcEEEEEEcCcCCCC
Confidence 3456666667888999999999999999999999988754 3455555444 88999999999999 4566789
Q ss_pred cccee
Q 008294 466 TGETL 470 (571)
Q Consensus 466 ~Gdtl 470 (571)
.||+|
T Consensus 84 ~GD~I 88 (99)
T 1d1n_A 84 EGDVI 88 (99)
T ss_dssp SCSEE
T ss_pred CCCEE
Confidence 99988
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0027 Score=62.11 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=51.5
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccccchhhhHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
..+.+.|||||+... .....++..+|.+|+|+.+...-........+.+... +.++.+|+|+.+... ...++.+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 457899999999664 4567788889999999988543333344555666655 457789999995332 23334444
Q ss_pred HH
Q 008294 231 IV 232 (571)
Q Consensus 231 i~ 232 (571)
++
T Consensus 220 l~ 221 (267)
T 3k9g_A 220 LK 221 (267)
T ss_dssp HT
T ss_pred Hh
Confidence 43
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00044 Score=68.72 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=51.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCC----CCchhHHH-------------HH--HHHHh----cC-CC
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVA----GVEPQSET-------------VW--RQADK----YG-VP 209 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~----g~~~~~~~-------------~~--~~~~~----~~-~p 209 (571)
.+.+.|||||+.. ...+..++..+|.+|+|+.... +....... +| +.++. .+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 4567888999999999998752 21111111 11 22222 24 66
Q ss_pred eEEEEecCCccc-cchhhhHHHHHH---HhCC
Q 008294 210 RICFVNKMDRLG-ANFFRTRDMIVT---NLGA 237 (571)
Q Consensus 210 ~ivviNK~D~~~-~~~~~~~~~i~~---~l~~ 237 (571)
+.+|+|++|... ....++.+.+++ .+|.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 778999999755 333444444544 3664
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0037 Score=62.56 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=66.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccch-----hhh-hhhceeEeeceEE-Ee---------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQE-QERGITITSAATT-TY--------- 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~-----~~e-~~~g~t~~~~~~~-~~--------- 151 (571)
....++++|+.|+|||||+..|...... ..|++. .+....... ... ...++.+-..... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 4568999999999999999999633110 011111 111111110 000 1223333222111 10
Q ss_pred ----ecCeEEEEEcCCCCCCcHHHH-------HHHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEE
Q 008294 152 ----WNKHRINIIDTPGHVDFTLEV-------ERALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (571)
Q Consensus 152 ----~~~~~i~liDTPG~~~f~~~~-------~~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivvi 214 (571)
..+....++||.|...+.... ..++. ..+-+++|+|++.|...... ...+. ..++ .++++
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iii 253 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLIL 253 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEE
Confidence 123457899999986643221 11221 23566899998877765543 23333 3444 46788
Q ss_pred ecCCcc
Q 008294 215 NKMDRL 220 (571)
Q Consensus 215 NK~D~~ 220 (571)
+|+|-.
T Consensus 254 ThlD~~ 259 (302)
T 3b9q_A 254 TKLDGS 259 (302)
T ss_dssp ECCSSC
T ss_pred eCCCCC
Confidence 999854
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0015 Score=63.40 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=55.4
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcC---------CCeEEEEecCCccccch
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG---------VPRICFVNKMDRLGANF 224 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~---------~p~ivviNK~D~~~~~~ 224 (571)
.+.+.|||||+... .....++..+|.+|+|+++...-.......+..+...+ ....+|+|+.|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68999999998654 46778889999999999875432333444455554433 45678999998543211
Q ss_pred hh--hHHHHHHHhCCc
Q 008294 225 FR--TRDMIVTNLGAK 238 (571)
Q Consensus 225 ~~--~~~~i~~~l~~~ 238 (571)
.. .++++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIK 206 (260)
T ss_dssp TSSCCHHHHHHHHCSE
T ss_pred ccccCHHHHHHHhCCc
Confidence 11 246777777753
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0017 Score=63.99 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
.+.+.|||||+..... ........+|.+|+|+.+...-........+.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4789999999976532 33445567899999999977666667777788888888877 889999954
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0021 Score=64.25 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=51.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
.+.+.|||||+..... ........+|.+|+|+.+...........++.+...+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999976543 33344577999999999887767777788888888888766 789999954
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.013 Score=55.99 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC---CeEEEEecCCccccchhhhHHH
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV---PRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~---p~ivviNK~D~~~~~~~~~~~~ 230 (571)
.+.+.|||||+.... ....++..+|.+|+|+.....-.......++.+...+. ..-+|+|+.|.... ...++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---~~~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---ITSDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---SCHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---CCHHH
Confidence 578999999997643 45667889999999998754333445556666766653 35688999986432 22367
Q ss_pred HHHHhCCc
Q 008294 231 IVTNLGAK 238 (571)
Q Consensus 231 i~~~l~~~ 238 (571)
+++.+|..
T Consensus 193 ~~~~~~~~ 200 (245)
T 3ea0_A 193 IEKVIGRP 200 (245)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCCC
Confidence 77777763
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0025 Score=63.29 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=51.6
Q ss_pred CeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc
Q 008294 154 KHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG 221 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~ 221 (571)
.+.+.|||||+..... ........+|.+|+|+.+...-.......++.+...+.+++ +|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4679999999976543 34455677899999999876556666777888888888765 7899999643
|
| >2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0035 Score=52.86 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=59.1
Q ss_pred EEEEEEeecCCCce---EEEEEEecceeCCCCEEEeCCCCcee---ecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 392 GLAFKIMSDPFVGS---LTFVRVYAGTLSAGSYVLNANKGKKE---RIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 392 ~~V~k~~~d~~~G~---i~~~rV~sG~l~~gd~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
|-|-.+|..+.+|+ +|-++|..|.++.+..+++.+.+... ++.+|.+. ..+|+++.+|.=|+| .+.+
T Consensus 13 AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrf----KdDVkEV~~G~ECGi~l~~fni 88 (120)
T 2crv_A 13 ASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHH----KDDISVIKTGMDCGLSLDEEKV 88 (120)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESS----SSCCSEECTTCEEEEECSCTTS
T ss_pred EEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhccc----ccccceecCCCEEEEEEccCCC
Confidence 44555555556687 99999999999999999998887543 45555544 488999999999999 4667
Q ss_pred Ccccccee
Q 008294 463 DTITGETL 470 (571)
Q Consensus 463 ~~~~Gdtl 470 (571)
++..||+|
T Consensus 89 Dik~GDiI 96 (120)
T 2crv_A 89 EFKPGDQV 96 (120)
T ss_dssp CCCTTEEE
T ss_pred CCCCCCEE
Confidence 78899998
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0055 Score=62.73 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccch-----hhh-hhhceeEeeceEE-Ee---------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWM-----EQE-QERGITITSAATT-TY--------- 151 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~-----~~e-~~~g~t~~~~~~~-~~--------- 151 (571)
....++++|+.|+|||||+..|...... ..|++. .+..+.... ... ...++.+...... ..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 4568999999999999999999733110 011111 111111100 000 1223332221110 00
Q ss_pred ----ecCeEEEEEcCCCCCCcHHHHH-------HHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHH-hcCCCeEEEE
Q 008294 152 ----WNKHRINIIDTPGHVDFTLEVE-------RALR-----VLDGAICLFDSVAGVEPQSETVWRQAD-KYGVPRICFV 214 (571)
Q Consensus 152 ----~~~~~i~liDTPG~~~f~~~~~-------~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~-~~~~p~ivvi 214 (571)
..+....++||.|......... .++. ..+-+++|+|++.|...... ...+. ..++ .++++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iii 310 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLIL 310 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEE
Confidence 0234578999999866422211 1111 23567999998877665443 22333 3344 46789
Q ss_pred ecCCcc
Q 008294 215 NKMDRL 220 (571)
Q Consensus 215 NK~D~~ 220 (571)
+|+|-.
T Consensus 311 ThlD~~ 316 (359)
T 2og2_A 311 TKLDGS 316 (359)
T ss_dssp ESCTTC
T ss_pred ecCccc
Confidence 999853
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0033 Score=63.41 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+++.++|+|..|+|||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5788999999999999999999843
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=66.58 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHhcCeEEEEEeCCCCCchhH--HHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 175 ALRVLDGAICLFDSVAGVEPQS--ETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
.+..+|.+++|+|+.++..... .+.+..+...++|.++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5778899999999987655443 22333445689999999999998754
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.017 Score=56.30 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=49.4
Q ss_pred cCeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCe-EEEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~ 226 (571)
+.+.+.||||||....... .......+|.+|+|+.+...-.......++.+.. .+++. -+|+|+.+.. ...+
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~ 191 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA--NEYE 191 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS--CCHH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc--hhHH
Confidence 3588999999996432111 1112246899999998753222222233344433 25564 4789998742 2245
Q ss_pred hHHHHHHHhCCc
Q 008294 227 TRDMIVTNLGAK 238 (571)
Q Consensus 227 ~~~~i~~~l~~~ 238 (571)
.++.+.+.+|..
T Consensus 192 ~~~~l~~~~~~~ 203 (269)
T 1cp2_A 192 LLDAFAKELGSQ 203 (269)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCc
Confidence 677787778764
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.03 Score=55.28 Aligned_cols=85 Identities=9% Similarity=-0.099 Sum_probs=49.3
Q ss_pred cCeEEEEEcCCCCCCcHHH-HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCe-EEEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDFTLE-VERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~ 226 (571)
..+.+.||||||....... .......+|.+|+++.+...-.......++.+.. .+++. -+|+|+.+.. ...+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHH
Confidence 3688999999996431111 1122357899999997743212222233333332 35664 4788998732 2345
Q ss_pred hHHHHHHHhCCcc
Q 008294 227 TRDMIVTNLGAKP 239 (571)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (571)
.++.+.+.+|...
T Consensus 195 ~~~~l~~~~g~~~ 207 (289)
T 2afh_E 195 LIIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHHTSCE
T ss_pred HHHHHHHHcCccc
Confidence 6777877787643
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.025 Score=59.30 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCC---cceeeee---ecCcccccchhhhhhhceeEeeceEEEee---cCeEE
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGR---NYKIGEV---HEGTATMDWMEQEQERGITITSAATTTYW---NKHRI 157 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~---~~~~g~~---~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i 157 (571)
..++..|+|+|..++|||+|+|.|+...+. ....|.. ..|=.+.. ...-..+|+-++.....+.. .+..+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~~v 142 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAV 142 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCC-SSSCCCCSEEEESSCEEEECTTSCEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCC-CCCCcCceEEEecCcccccCCCCCeeEE
Confidence 457889999999999999999987633210 0000000 00000000 11223456655554443332 23579
Q ss_pred EEEcCCCCCCcH-----HHHHHHHH--hcCeEEEEEeCCCCCchhHHHHHHHHH
Q 008294 158 NIIDTPGHVDFT-----LEVERALR--VLDGAICLFDSVAGVEPQSETVWRQAD 204 (571)
Q Consensus 158 ~liDTPG~~~f~-----~~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~ 204 (571)
.|+||.|..+-. ...+.++. .++..|+= ....+..+..+.+..+.
T Consensus 143 lllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN--~~~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYN--LSQNVQEDDLQHLQLFT 194 (457)
T ss_dssp EEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEE--EESSCCHHHHHHHHHHH
T ss_pred EEEeccCCCCcccCccccHHHHHHHHHHhhheeec--ccccCCHHHHHHHHHHH
Confidence 999999986641 22333333 45665544 44466677666665443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0023 Score=64.11 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...++++|++|+|||||+|+|+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 3589999999999999999995
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.084 Score=50.28 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=57.3
Q ss_pred cCeEEEEEcCCCCC-----CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHV-----DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~-----~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
..+.+.+||+||.. +......-+-....-+|+|+++..+-...+...++.+...++++. +|+|++|........
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46789999999732 111112222222356889999987655566666677778888876 788999854333456
Q ss_pred hHHHHHHHhCCcc
Q 008294 227 TRDMIVTNLGAKP 239 (571)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (571)
..+.+++.+|...
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 6788888887643
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.14 Score=52.08 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=46.8
Q ss_pred cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcccc----------chhhhHHHHHHHhCCcceeeeccCC
Q 008294 179 LDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA----------NFFRTRDMIVTNLGAKPLVVQLPVG 247 (571)
Q Consensus 179 ~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~----------~~~~~~~~i~~~l~~~~~~~~~pi~ 247 (571)
.+++++|.-+..-....++..+..+++.++|+. +|+|++..... .+...++++.+.++..+ ...+|+.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl~ 315 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPLL 315 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEECC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecCC
Confidence 367888887765445667788899999999985 78899886421 14556777777776532 3445543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.54 E-value=0.041 Score=56.13 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHhcCeEEEEEeCCCCCchhHHH---HHHHHHhcCCCeEEEEecCCcccc
Q 008294 176 LRVLDGAICLFDSVAGVEPQSET---VWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 176 l~~~D~~ilVvda~~g~~~~~~~---~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
+..+|.+++| |+... ...... .+..+...++|.++|+||+|+...
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCH
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc
Confidence 4567988866 55543 222222 233445679999999999998754
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.027 Score=58.49 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=54.9
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCc-------hhHHHHHHHHHhcC--CCe---EEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVE-------PQSETVWRQADKYG--VPR---ICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~--~p~---ivviNK~D~~ 220 (571)
+.+.+.|||||.... ..+..++..+|.+|+|+.+..--. ....+.++.++..+ .++ +.++|+.+.
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~- 319 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN- 319 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS-
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC-
Confidence 468899999998765 346778889999999997642100 11122334444443 333 446777763
Q ss_pred ccchhhhHHHHHHHhCCcceeeecc
Q 008294 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
........+++++.+|....+..+|
T Consensus 320 ~~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 320 KADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp CHHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred chhHHHHHHHHHHHhcccccceecc
Confidence 2224456778888888654433344
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.016 Score=57.87 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|+|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999997
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.027 Score=60.26 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=59.9
Q ss_pred EEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCce---eecceEEEeccCceeecCeecCCCEEEE--eCCCCcccc
Q 008294 393 LAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKK---ERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITG 467 (571)
Q Consensus 393 ~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~---~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~G 467 (571)
-|-.+|..+..|.++-++|..|+++.|..+++.+.+.. -+|.+|.+. ..+|+++..|.=|+| .+..++..|
T Consensus 412 ~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~----k~~v~e~~~g~ecgi~~~~~~~~~~g 487 (501)
T 1zo1_I 412 EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRF----KDDVNEVRNGMECGIGVKNYNDVRTG 487 (501)
T ss_dssp EEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEET----TEEESEEETTCCEEEEBCCCTTCCTT
T ss_pred EEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhccc----CccccEECCCCEEEEEEcCcCCCCCC
Confidence 45566666777999999999999999999999888753 345555443 389999999999998 456678899
Q ss_pred ceec
Q 008294 468 ETLC 471 (571)
Q Consensus 468 dtl~ 471 (571)
|+|-
T Consensus 488 d~~~ 491 (501)
T 1zo1_I 488 DVIE 491 (501)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9884
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0047 Score=65.83 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=56.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchh-hhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWME-QEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~-~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...|+++|.+|+||||+..+|....+..... +...+... .+...|. .....++|+.|...+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~------t~~~~~d~~r~~~~g~------------~~~~~ifd~~g~~~~ 100 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP------TREFNVGQYRRDMVKT------------YKSFEFFLPDNEEGL 100 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC------EEEEEHHHHHHHHHCS------------CCCGGGGCTTCHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCC------ceEEecchhhhhhccC------------CCcccccCCCCHHHH
Confidence 4689999999999999999997433210000 00000000 0011111 122346788886322
Q ss_pred --HHHH--------HHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCCeEEE
Q 008294 169 --TLEV--------ERALRVLDGAICLFDSVAGVEPQSETVW-RQADKYGVPRICF 213 (571)
Q Consensus 169 --~~~~--------~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~~~p~ivv 213 (571)
.... ...+...++.++|+|++.. ....+..| ..+++.+.+++++
T Consensus 101 r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 101 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEE
Confidence 2221 3445557888999999876 33344444 5556666665444
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.22 Score=49.97 Aligned_cols=66 Identities=15% Similarity=0.079 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc----------cchhhhHHHHHHHhCCcceeeeccC
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG----------ANFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~----------~~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+.+++|.-+..-....++..+..+.+.++|+. +|+|++.... ..+.+.++++.+.++..+ ...+|+
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~iPl 299 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV-VAEVPL 299 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE-EEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 48888887765445667788889999999985 7889987542 113456777888776432 234554
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.064 Score=57.81 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=62.4
Q ss_pred eEEEEEEEeecCC---CceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eC-CCC
Q 008294 390 FAGLAFKIMSDPF---VGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG-LKD 463 (571)
Q Consensus 390 ~~~~V~k~~~d~~---~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l~~ 463 (571)
-.+.|-++|..+. .|.++-++|..|+++.|..+++.+.|.....++|-.+. +...+|+++..|.=|+| .+ ..+
T Consensus 448 g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~~~ 526 (537)
T 3izy_P 448 GEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK-HHKDDTSVVKTGMDCGLSLDEEKIE 526 (537)
T ss_dssp SEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-CSSCCCSEEETTCEEEEESSSSCSS
T ss_pred EEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-ccCcccceEcCCCEEEEEEcCcccC
Confidence 3456666665543 57899999999999999999999988655555555555 44589999999999999 35 667
Q ss_pred cccccee
Q 008294 464 TITGETL 470 (571)
Q Consensus 464 ~~~Gdtl 470 (571)
+..||+|
T Consensus 527 ~~~gd~i 533 (537)
T 3izy_P 527 FKVGDAI 533 (537)
T ss_dssp CSCCCEE
T ss_pred CCCCCEE
Confidence 8899987
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=53.15 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+.++|+|++|+|||||++.|...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999743
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.048 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....|+++|.+|+||||+..+|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999964
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.++|+|++|+|||||++.|+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999973
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.017 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+++++|+.|+|||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.022 Score=53.13 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..+.+.|+|+|++|+|||||+++|+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 335678999999999999999999854
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.27 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+...|+++|.+|+||||++..|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999963
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.18 Score=47.27 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=58.5
Q ss_pred cCeEEEEEcCCCCCCc-----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDF-----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f-----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
+.+.+.||||||.... ......+....+.+|+|+++..+-..+....++.++..+++++ +|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 4688999999976431 1111111122245788888754333445555666667788866 789999965444566
Q ss_pred hHHHHHHHhCCcceeeeccCCC
Q 008294 227 TRDMIVTNLGAKPLVVQLPVGA 248 (571)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~pi~~ 248 (571)
..+.+++.++..... .+|...
T Consensus 187 ~~~~l~~~~~~~vl~-~Ip~~~ 207 (224)
T 1byi_A 187 YMTTLTRMIPAPLLG-EIPWLA 207 (224)
T ss_dssp HHHHHHHHSSSCEEE-EECCCT
T ss_pred HHHHHHHHcCCCEEE-ECCCCc
Confidence 778888888765442 455443
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.03 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+....|+|+|++|+|||||++.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999996
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.03 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...++++|++|+|||||++.|...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 347899999999999999999744
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.33 Score=49.00 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc---c---------chhhhHHHHHHHhCCcceeeeccC
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG---A---------NFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~---~---------~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+.+++|.-+..-....++..+..+.+.++|+. +|+|++.-+. . ...+.++++.+.++.......+|+
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 36777876654444567788899999999985 7889987321 1 145667888888864222334554
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.031 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|+.|||||||++.|..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999973
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.034 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...|+++|++|+|||||++.|.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.033 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.++|+|.+|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999984
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.035 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|++|+|||||++.|+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999844
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.031 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|++|+|||||++.|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999973
|
| >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.44 Score=47.90 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=43.7
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcccc-----------chhhhHHHHHHHhCCcceeeeccC
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA-----------NFFRTRDMIVTNLGAKPLVVQLPV 246 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~-----------~~~~~~~~i~~~l~~~~~~~~~pi 246 (571)
+.+++|..+.......+...+..+...++|+. +|+|++..+.. ...+.++++.+.++.-++ ..+|.
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~ 299 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQ 299 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecC
Confidence 46888887765445567788888999999986 68999983111 134556777777754332 44554
|
| >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.51 Score=47.89 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=43.4
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccc-c------------chhhhHHHHHHHhCCcceeeecc
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLG-A------------NFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~-~------------~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
+.+++|.-+..-....+...+..+...++|+. +|+|++.-.. . .....++++.+.++. .....+|
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~-~~~~~~p 310 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYED-YHLVKMP 310 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccC-CCEEEec
Confidence 46788877655444567778889999999985 7889987533 1 134567778887742 2233455
Q ss_pred C
Q 008294 246 V 246 (571)
Q Consensus 246 i 246 (571)
+
T Consensus 311 l 311 (348)
T 3io3_A 311 L 311 (348)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.053 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+++.|....|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999975444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.037 Score=49.69 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+++|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975444
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.04 Score=49.28 Aligned_cols=25 Identities=12% Similarity=-0.176 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+|+|.+|+||||+.+.|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999975544
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.034 Score=50.37 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3478999999999999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.038 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
....++|+|+.|+|||||++.|+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999743
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=1.3 Score=42.61 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=49.6
Q ss_pred cCeEEEEEcCCCCC-----Cc-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCc-cccch
Q 008294 153 NKHRINIIDTPGHV-----DF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDR-LGANF 224 (571)
Q Consensus 153 ~~~~i~liDTPG~~-----~f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~-~~~~~ 224 (571)
..+.+.+||+||-. +. .....-+-....-+|+|+|+..+-...+...++.+...++++. +|+||+.- .....
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~~ 204 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVA 204 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHHH
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhhh
Confidence 35789999999742 11 1122223333467899999987655556666677777888876 67899842 11112
Q ss_pred hhhHHHHHHH
Q 008294 225 FRTRDMIVTN 234 (571)
Q Consensus 225 ~~~~~~i~~~ 234 (571)
....+.|++.
T Consensus 205 ~~~~~~le~~ 214 (251)
T 3fgn_A 205 ASNRSALARI 214 (251)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 3344555554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.042 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..-.++++|+.|+|||||++.|...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999743
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.043 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...|+|+|+.|+|||||++.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.043 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.++|+|..|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.049 Score=50.48 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
...|+++|.+|+|||||++.|....|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 458999999999999999999754443
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.047 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+++|.+|+||||+.+.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 46899999999999999999 5555
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.27 Score=53.67 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcc
Q 008294 181 GAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRL 220 (571)
Q Consensus 181 ~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 220 (571)
.+++|+.+.......+...+..+...+++.. +|+|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6888888765445566777888888888765 779999854
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=93.30 E-value=0.043 Score=56.03 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 478999999999999999997
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.05 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+++|++|+|||||++.|..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.13 Score=56.25 Aligned_cols=67 Identities=6% Similarity=0.040 Sum_probs=43.8
Q ss_pred hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccc-----------cchhhhHHHHHHHhCCcceeeecc
Q 008294 178 VLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLG-----------ANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 178 ~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~-----------~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.+|.+++|+.+.......+...+..+...+++. -+|+|+++-.. ....+.++++++.++. ++ ..+|
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~v-~~iP 566 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHAS-RV-ALVP 566 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTCS-SE-EEEE
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcCC-cE-EEcc
Confidence 458899998765444455667778888888876 47899998541 1134456777777754 22 4455
Q ss_pred C
Q 008294 246 V 246 (571)
Q Consensus 246 i 246 (571)
.
T Consensus 567 ~ 567 (589)
T 1ihu_A 567 V 567 (589)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.045 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+.+.|+++|++|+|||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998554
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.044 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
-|+|+|++|+|||||+++|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999854
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.055 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..++++|++|+|||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999973
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.048 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3478999999999999999994
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.061 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+...|....|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975544
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.029 Score=51.03 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++|+|.+|+|||||++.|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.56 Score=46.16 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
....+.++|++|+|||+|+.++...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3458999999999999999999743
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.5 Score=43.75 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++++|++|+|||||+..|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999975
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.092 Score=48.51 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=24.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+.+.|+|+|.+|+||||+...|....|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999975554
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=92.79 E-value=0.054 Score=51.50 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999984
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.067 Score=48.63 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999975544
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.066 Score=51.41 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
...|+|+|++|+|||||++.|....|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999999755454
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.069 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|+|+|.+|+|||||++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975544
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.08 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.59 E-value=0.065 Score=51.53 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.07 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.071 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.041 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+|+|.+|+||||+++.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999974433
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.074 Score=49.28 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+|+|.+|+|||||.+.|..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.38 Score=52.50 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=59.7
Q ss_pred CCeEEEEE--EEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCC--
Q 008294 388 EPFAGLAF--KIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL-- 461 (571)
Q Consensus 388 ~p~~~~V~--k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-- 461 (571)
+|..+.|. .+|..+. |.++-++|..|+++.|..|.. +.+. ..++|-.+. +...+|++|..|.=|+| .+.
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~-~~k~~v~~~~~g~e~gi~~~~~~~ 536 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQ-DKGENLKSASRGQKVAMAIKDAVY 536 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEE-ETTEEESEEETTCCEEEEEETCCB
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhc-ccCccccccCCCCEEEEEEeCccc
Confidence 45555544 3555566 899999999999999999998 5553 455565555 34489999999999998 444
Q ss_pred -CCccccceecC
Q 008294 462 -KDTITGETLCD 472 (571)
Q Consensus 462 -~~~~~Gdtl~~ 472 (571)
.++..||.|-.
T Consensus 537 ~~~~~~~d~~~~ 548 (594)
T 1g7s_A 537 GKTIHEGDTLYV 548 (594)
T ss_dssp TTTBCTTCEEEE
T ss_pred CCCCCCCCEEEE
Confidence 46888998854
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.097 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+..+|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.083 Score=47.61 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999976544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.061 Score=50.51 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999996
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.071 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..|+++|.+|+||||+.+.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.086 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+....|+|+|++|+|||||++.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 3456789999999999999999986
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.15 Score=51.13 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+....|+|+|++|+|||||++.|...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999998633
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.098 Score=47.70 Aligned_cols=26 Identities=23% Similarity=0.101 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+.+.|....|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999975444
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.083 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..-.++|+|+.|+|||||++.|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 34589999999999999999997
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.069 Score=51.23 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.097 Score=47.52 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+.+.|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975444
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.067 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999974
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.30 E-value=0.069 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999994
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.084 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|+|.+|+||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999975544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.072 Score=50.78 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++|+|+.|+|||||++.|.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.071 Score=51.29 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999995
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.074 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999996
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.071 Score=52.10 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.072 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999994
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.072 Score=51.76 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.16 E-value=0.086 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.073 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.078 Score=52.85 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++|+|++|+|||||++.|+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34589999999999999999997
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.1 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.....|+|+|.+|+|||||++.|.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999996
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.08 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+.|+|+|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.055 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=16.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...++|+|++|+|||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999996
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.077 Score=48.98 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.++++|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999873
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.10 E-value=0.073 Score=50.24 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=92.05 E-value=0.095 Score=47.42 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.++|+++|.+|+||||+...|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999975544
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.01 E-value=0.078 Score=50.92 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.079 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHH
Confidence 3478999999999999999994
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.84 Score=43.72 Aligned_cols=83 Identities=10% Similarity=-0.094 Sum_probs=49.8
Q ss_pred cCeEEEEEcCCCCCC-----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhh
Q 008294 153 NKHRINIIDTPGHVD-----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRT 227 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~ 227 (571)
..+.+.|||.+|... ......-+-....-+|+|+++..|.-..+...++.++..+++.=+|+|+++-...-.+.+
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~~~~~~~~ 209 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSIS 209 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTCCHHHHHT
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCccchhhhh
Confidence 467899999997321 111112222223458899999877555566667777788888557899998544222333
Q ss_pred HHHHHHHh
Q 008294 228 RDMIVTNL 235 (571)
Q Consensus 228 ~~~i~~~l 235 (571)
.--+.+.+
T Consensus 210 ~p~le~~~ 217 (242)
T 3qxc_A 210 LPYIELFN 217 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 33344433
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.18 Score=50.45 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.+.|.|++|+|||+|+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999754
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.29 Score=50.09 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=27.7
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCC
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV 189 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~ 189 (571)
..+.+.|||||... ...+...+..+|.+++|+.+.
T Consensus 258 ~~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 258 DNYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGS 292 (373)
T ss_dssp SCCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCC
T ss_pred CCCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCC
Confidence 46789999999543 356778889999999998764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.086 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=91.88 E-value=0.08 Score=52.70 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+|+|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 478999999999999999995
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.11 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
....|+|+|+.|+|||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999974333
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.12 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHH
Confidence 3479999999999999999985
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.1 Score=47.64 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|+++|.+|+||||+...|....|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.11 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
...|+|+|+.|+|||||++.|....|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 458999999999999999999755453
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.074 Score=48.21 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++++|++|+|||||+.++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999996
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.1 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975544
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.11 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+++|.+|+||||+...|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=91.79 E-value=0.087 Score=50.93 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999994
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.087 Score=51.15 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999994
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.17 Score=52.15 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeee-cCcccccchhhhhhhce
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVH-EGTATMDWMEQEQERGI 141 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~-~g~~~~d~~~~e~~~g~ 141 (571)
-.++++|+.|+|||||++.|. |.....|++. .|....+....+..+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~ia---Gl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL---RLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH---TCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CEEEEECCCCChHHHHHHHHh---CCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 478999999999999999995 5444446553 33333333333333444
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.11 Score=48.61 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.086 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=22.4
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++...|+|+|..|+|||||++.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 44556789999999999999999986
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.70 E-value=0.11 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+...|+|+|.+|+|||||++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999863
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.70 E-value=0.12 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=21.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..+...|+|+|.+|+|||||++.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999886
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.24 Score=51.32 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=54.8
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-----eEEEEecCCcc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-----RICFVNKMDRL 220 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-----~ivviNK~D~~ 220 (571)
+.+.+.|||||+... ..+..++..+|.+|+|+.+..-- -......++.++..+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~- 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG- 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC----
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC-
Confidence 457899999998765 45777888999999999764210 01122344445554433 3558899883
Q ss_pred ccchhhhHHHHHHHhCCcceeeecc
Q 008294 221 GANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
........+.+++.+|.......+|
T Consensus 323 ~~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 323 KRDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp CHHHHHHHHHHHHHHTTSEECCC--
T ss_pred chhHHHHHHHHHHHhhHhhhceeCC
Confidence 2234456778888888755444455
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.091 Score=51.48 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999994
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=91.58 E-value=0.13 Score=47.36 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|.+|+||||+...|....|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999975544
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.093 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999994
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.11 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999975544
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=91.55 E-value=0.097 Score=47.56 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..|+|+|.+|+||||+++.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999997543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.095 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999984
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.1 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
++|+|+|.+|+||||+...|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999975544
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.13 Score=47.56 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999975444
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.093 Score=49.27 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
--.++|+|++|+|||||+..|+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999996
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.099 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999994
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.15 Score=46.25 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|+++|.+|+||||+...|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975444
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.35 E-value=0.75 Score=49.25 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+.+.|.|++|+|||||+.++....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999985554
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.16 Score=47.94 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..++.+.|.|+|++|+||+|+...|....|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 334567889999999999999999986555
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.12 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+|+|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999743
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.12 Score=47.67 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999743
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.13 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+...|+|+|+.|+|||||++.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999963
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.14 Score=49.27 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+...|+|.|.+|+||||+.+.|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999975444
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.12 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|.+|+||||+.+.|....|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999975544
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.67 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+|.+.|++|+|||+|+.++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999644
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.16 Score=48.74 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+...|+|+|.+|+||||+...|....|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999975544
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.093 Score=53.70 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+++|+|++|+|||||++.|+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999997
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.14 Score=45.69 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+|+++|.+|+||||+...|....|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975444
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.39 Score=41.80 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+|.+.|++|+|||+++.++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999995
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.1 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++++|++|+|||||+.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.12 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+...|+|+|.+|+||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.14 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+++|.+|+||||+...|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.12 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|++|+|||||+++|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999997
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.14 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999975543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.12 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999994
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.12 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999975544
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.73 E-value=1.1 Score=45.26 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....++.|.|++|+|||||+.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999973
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.16 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975444
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.14 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+++|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999975544
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=90.66 E-value=0.13 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|||||||++.|.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHh
Confidence 3478999999999999999995
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=90.66 E-value=0.16 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=90.66 E-value=0.13 Score=48.24 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975544
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.17 Score=49.98 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.4
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..+...|+++|.+|+|||||+.+|....
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445789999999999999999998543
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=90.56 E-value=1 Score=44.49 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+.|.|++|+|||+|+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.16 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999963
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=90.45 E-value=0.17 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999986555
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.13 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3478999999999999999994
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.13 Score=46.36 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+++|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999975544
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.21 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.--+.|.|.+|+|||||+-.+...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346889999999999999988743
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.15 Score=46.47 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.13 Score=52.41 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 478999999999999999995
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=90.28 E-value=0.096 Score=52.90 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+++++|+.|+|||||++.|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999996
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=0.076 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.17 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++|+|++|+|||||++.|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999997
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.4 Score=44.08 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.+.|++|+|||+|+.++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999973
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.17 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+|+|+|.+|+||||+.+.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975444
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=90.06 E-value=0.15 Score=52.14 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|+.|+|||||++.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999963
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.18 Score=48.85 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.18 Score=48.61 Aligned_cols=29 Identities=24% Similarity=-0.033 Sum_probs=23.9
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......|+++|.+|+||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457899999999999999999975543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.17 Score=51.60 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=0.21 Score=47.37 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+|+|+|.+|+||||+...|....+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999975544
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=89.79 E-value=0.16 Score=52.17 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 478999999999999999995
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.17 Score=51.56 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 478999999999999999995
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=1.9 Score=41.56 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=23.1
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
....+.+.+.|++|+|||+|+.++...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345689999999999999999999743
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.18 Score=51.53 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 478999999999999999995
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=89.62 E-value=0.19 Score=53.81 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+++|+|++|+|||||+++|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999996
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.21 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+++|++||||+|+...|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999865553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.18 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+|+|+|.+|+||||+.+.|....|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999975444
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.23 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+...|+|+|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999996
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=89.48 E-value=0.24 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...+.+.|++|+|||+|+.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999974
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=89.46 E-value=0.19 Score=51.63 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 468999999999999999995
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=0.19 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 3478999999999999999995
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.33 E-value=0.27 Score=45.38 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......|+++|.+|+||||+.+.|....|
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34568999999999999999999975434
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=0.19 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.-.++|+|+.|+|||||+++|+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999973
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.95 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+-..+.|+|++|+|||||+..++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999743
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.22 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+.++++|++|+|||||++++....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999999999997443
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.62 Score=45.85 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
....++.+.|++|+|||+|+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.25 Score=46.58 Aligned_cols=24 Identities=29% Similarity=0.124 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|+|.+|+||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999975544
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=88.95 E-value=0.24 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..|+++|.+|+||||+.+.|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999975544
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=0.24 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhc
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999997543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=88.85 E-value=0.15 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 478999999999999999995
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=0.26 Score=47.06 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|+|+|++|+||||+.+.|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999975544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=88.79 E-value=0.27 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...|+++|.+|+||||+...|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.24 Score=46.38 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++++|++|+|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999997
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=0.27 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.++++|++|+|||||++++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999743
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=88.07 E-value=0.35 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+...|+|.|.+|+||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997443
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.04 E-value=1.2 Score=46.54 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......+-|.+.|++|+|||+|+.++....+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3345567899999999999999999975444
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=0.32 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.|+|.|.+|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999975444
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=0.16 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.72 E-value=0.36 Score=45.84 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+...|+|+|.+|+||||+...|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999975444
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=87.57 E-value=0.48 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..+|.+.|.+|+||||++-++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 3679999999999999977775
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=0.55 Score=44.42 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=29.6
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 180 DGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 180 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+.-+++||-..-+.....+.+..+...+++++++.-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 355788987765555455556666667999999998888544
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=0.3 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999744
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.45 E-value=0.13 Score=61.71 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.|||||++|+|||||++.|+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3489999999999999999996
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.30 E-value=0.27 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+++.+.|++|+|||+|+.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999974
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=87.27 E-value=0.2 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=17.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.|+|.|.+|+||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999963
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=87.07 E-value=0.32 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|+.|+|||||++.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 578999999999999999996
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.07 E-value=2.8 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
...+.+.|++|+|||||+..+....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3689999999999999999997544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=87.06 E-value=0.96 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...+.|.|++|+|||||+..++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998873
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=87.05 E-value=0.37 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.++++|++|+|||||+.++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 35999999999999999999743
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.05 E-value=2.2 Score=42.51 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
....++.|.|++|+|||++++.++...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999997443
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=0.3 Score=48.07 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|++|+|||||+..|.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3478999999999999999986
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=87.00 E-value=0.31 Score=49.02 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..++++|++|+|||||++.+....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999975443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=86.98 E-value=0.35 Score=44.40 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.+.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.94 E-value=1.8 Score=43.08 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..+.|.+.|++|+|||+|+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3478999999999999999999744
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=86.78 E-value=0.37 Score=45.15 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..+.+.+.|++|+|||||+.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=86.77 E-value=0.43 Score=45.76 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+.+.++|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999743
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=86.76 E-value=0.34 Score=49.15 Aligned_cols=27 Identities=26% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
.+--.++|+|+.|+|||||++.|....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999997543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=86.69 E-value=0.38 Score=45.41 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
...++|+|++|+|||||+..|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999973
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.31 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
....++|+|+.|+|||||++.|.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999996
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=86.54 E-value=0.39 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.....++++|++|+|||||++.|..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446899999999999999999973
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=86.17 E-value=5 Score=39.96 Aligned_cols=21 Identities=5% Similarity=-0.141 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.|.|++|+|||||+-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888863
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.08 E-value=0.54 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4589999999999999999995
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=86.02 E-value=0.42 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=85.99 E-value=0.51 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.066 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|++|+|||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999986655
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=85.95 E-value=2.9 Score=46.89 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEE-cCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINII-DTPGHV 166 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~li-DTPG~~ 166 (571)
....++.+.|++|+|||+|+.++....+.. ...+.. ..+++. .++. .++ ..||+.
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~--~~~i~~-s~~~~~--------~~~~-------------~l~g~~~g~~ 541 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIE--LLRFDM-SEYMER--------HTVS-------------RLIGAPPGYV 541 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCE--EEEEEG-GGCSSS--------SCCS-------------SSCCCCSCSH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCC--EEEEec-hhhcch--------hhHh-------------hhcCCCCCCc
Confidence 344589999999999999999997544311 001000 000000 0000 011 124533
Q ss_pred Cc--HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh
Q 008294 167 DF--TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205 (571)
Q Consensus 167 ~f--~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~ 205 (571)
.+ ......+++.+...++++|=.+.........+..+..
T Consensus 542 g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 542 GFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 22 1224556777888899999777666665555554443
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=85.93 E-value=0.82 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...|+++|.+|+||||+...|...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999643
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=85.92 E-value=0.53 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999986654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.87 E-value=0.4 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..-.++++|+.|+|||||++.|.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999999995
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=85.56 E-value=0.4 Score=52.28 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999999996
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=85.46 E-value=0.48 Score=51.60 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++++|+.|+|||||++.|.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3479999999999999999885
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=85.45 E-value=1.6 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+.|.|++|+|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 346888999999999999998743
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=0.52 Score=43.69 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+-|+|+|++|+|||||+..|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999744
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=2 Score=41.13 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..|.|.|++|+|||+|+.++...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57899999999999999999744
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 571 | ||||
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 1e-114 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 3e-82 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 3e-51 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 9e-51 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 1e-42 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 1e-37 | |
| d2bv3a1 | 121 | b.43.3.1 (A:283-403) Elongation factor G (EF-G), d | 3e-37 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 4e-33 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 1e-27 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 2e-27 | |
| d2bv3a4 | 75 | d.58.11.1 (A:404-478) Elongation factor G (EF-G) { | 5e-26 | |
| d1n0ua1 | 138 | b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), | 5e-25 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 2e-23 | |
| d2dy1a1 | 103 | b.43.3.1 (A:275-377) Elongation factor G (EF-G), d | 3e-22 | |
| d1n0ua4 | 79 | d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) | 6e-21 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 2e-19 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 0.004 | |
| d2dy1a4 | 77 | d.58.11.1 (A:378-454) Elongation factor G (EF-G) { | 2e-19 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 3e-17 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 6e-15 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 8e-04 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 1e-12 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-08 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 3e-07 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 3e-04 | |
| d1r5ba1 | 95 | b.43.3.1 (A:460-554) Eukaryotic peptide chain rele | 0.004 |
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 338 bits (869), Expect = e-114
Identities = 170/276 (61%), Positives = 204/276 (73%), Gaps = 1/276 (0%)
Query: 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITS 145
LK RNIGI AHIDAGKTTTTER+L+YTGR +KIGEVHEG ATMD+MEQE+ERGITIT+
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 61
Query: 146 AATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
A TT +W HRINIID PGHVDFT+EVER++RVLDGAI +FDS GVEPQSETVWRQA+K
Sbjct: 62 AVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 121
Query: 206 YGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAII 265
Y VPRI F NKMD+ GA+ + + LGA+P+V+QLP+G ED F G++D+++MKA
Sbjct: 122 YKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYT 181
Query: 266 WSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325
+ G +LG IP A+EY +++E + D+ M YLEG EP EE + I
Sbjct: 182 Y-GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 240
Query: 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPS 361
RKGTI PV GSA KNKGVQ LLDAVVDYLPS
Sbjct: 241 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 256 bits (654), Expect = 3e-82
Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 6/271 (2%)
Query: 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT 150
R + ++ H +GKTT TE +L+ TG + G V EGT T D+ + + T+ +
Sbjct: 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 62
Query: 151 YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR 210
+ HR+ ++D PG+ DF E+ AL D A+ + AGV+ +E W A++ G+PR
Sbjct: 63 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR 122
Query: 211 ICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIWSGEE 270
+ V K+D+ G + D+ T P + LP+ + G++D+ KA + E
Sbjct: 123 MVVVTKLDKGGDYYALLEDLRSTLGPILP--IDLPLYEGGKWVGLIDVFHGKAYRYENGE 180
Query: 271 LGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTI 330
++P ++ Q +R +++E IVE D+ +E YLEG E E ++K +
Sbjct: 181 ----EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 236
Query: 331 AGSFVPVLCGSAFKNKGVQPLLDAVVDYLPS 361
G PV S + GV PLL+ +++ LPS
Sbjct: 237 RGLLYPVALASGEREIGVLPLLELILEALPS 267
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 177 bits (449), Expect = 3e-51
Identities = 80/311 (25%), Positives = 125/311 (40%), Gaps = 41/311 (13%)
Query: 71 FSVFAMAAEESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATM 130
F+V M + K + RN+ ++AH+D GK+T T+ ++ G
Sbjct: 2 FTVDQMRSLMDKV----TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARF--T 55
Query: 131 DWMEQEQERGITITSAATTTYW----------------NKHRINIIDTPGHVDFTLEVER 174
D + EQERGITI S A + Y N IN+ID+PGHVDF+ EV
Sbjct: 56 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 115
Query: 175 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTN 234
ALRV DGA+ + D++ GV Q+ETV RQA + + +NK+DR +++ +
Sbjct: 116 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 175
Query: 235 LGAKPLVVQLPVG-AEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRS 293
V + V D G V + + + G +++ A Y
Sbjct: 176 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGS------GLHGWAFTIRQFATRYAK 229
Query: 294 QMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLD 353
+ +D M L G+ KK K T A G + +LD
Sbjct: 230 KF-----GVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAE-------GKPLERAFNMFILD 277
Query: 354 AVVDYLPSPLD 364
+ + ++
Sbjct: 278 PIFRLFTAIMN 288
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 171 bits (435), Expect = 9e-51
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 5/205 (2%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + + EV + +D +E+ RGITI +A
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY-GDIDKAPEERARGITINTAH 59
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
K + +D PGH D+ + +DGAI + + G PQ+ A + G
Sbjct: 60 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 119
Query: 208 VPRI-CFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKMKAIIW 266
VP I F+NK+D + D++ + + P G E L+ ++ +
Sbjct: 120 VPYIVVFMNKVDMVDDP--ELLDLVEMEVRDLLNQYEFP-GDEVPVIRGSALLALEQMHR 176
Query: 267 SGEELGAKFAYEDIPANLQKMAQEY 291
+ + + + D L EY
Sbjct: 177 NPKTRRGENEWVDKIWELLDAIDEY 201
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 150 bits (381), Expect = 1e-42
Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 28/221 (12%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-------------IGEVHEGTATMDWME 134
K + N+ ++ H+D+GK+TTT +++ G K + +D ++
Sbjct: 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLK 63
Query: 135 QEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG--- 191
E+ERGITI A K+++ +ID PGH DF + D AI + G
Sbjct: 64 AERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 123
Query: 192 ----VEPQSETVWRQADKYGVPR-ICFVNKMDRLGANFFR------TRDMIVTNLGAKPL 240
+ Q+ A GV + I VNKMD + + R + +G P
Sbjct: 124 AGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK 183
Query: 241 VVQLPVGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIP 281
V + N +++ A + G E K
Sbjct: 184 TVPFVPISGWNGDNMIEATT-NAPWYKGWEKETKAGVVKGK 223
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 135 bits (341), Expect = 1e-37
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
K + N+G + H+D GKTT T + G + +D +E+ RGITI +A
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILA--EGGGAKFKKYEEIDNAPEERARGITINAAH 58
Query: 148 TTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 207
D PGH D+ + LDG I + + G PQ+ A + G
Sbjct: 59 VEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 208 V-PRICFVNKMD 218
V + +VNK D
Sbjct: 119 VEHVVVYVNKAD 130
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Score = 132 bits (332), Expect = 3e-37
Identities = 68/123 (55%), Positives = 90/123 (73%), Gaps = 3/123 (2%)
Query: 362 PLDLPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSY 421
PLD+P +KGT PE +E + P A LAFKIM+DP+VG LTF+RVY+GTL++GSY
Sbjct: 1 PLDIPPIKGTTPEGEV--VEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSY 58
Query: 422 VLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDADHP-ILLE 480
V N KG+KER+ RLL MHAN RE+V+ AGD+ A+ GLK+TITG+TL D P ++LE
Sbjct: 59 VYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILE 118
Query: 481 RMD 483
++
Sbjct: 119 SIE 121
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 124 bits (311), Expect = 4e-33
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKI-------------GEVHEGTATMDWMEQEQE 138
N+ ++ H+D GK+T R+L G + E + +D +++E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 139 RGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSET 198
RG+TI K+ IID PGH DF + D AI + + G +
Sbjct: 65 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 124
Query: 199 VWRQADKY-------GVPR-ICFVNKMDRLGANFFRTR 228
V Q ++ G+ + I VNKMD + R
Sbjct: 125 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR 162
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 108 bits (271), Expect = 1e-27
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 15/158 (9%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK---------------IGEVHEGTATMDW 132
K+ ++D GK+T R+L + Y+ G+ + +D
Sbjct: 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDG 66
Query: 133 MEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV 192
++ E+E+GITI A K + I DTPGH +T + D AI L D+ GV
Sbjct: 67 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 126
Query: 193 EPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230
+ Q+ A G+ I L R +
Sbjct: 127 QTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFES 164
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 108 bits (269), Expect = 2e-27
Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 8/227 (3%)
Query: 91 RN--IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAAT 148
R+ + ++ H+D GKTT + + + + G + + + E
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 149 TTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGV 208
+ + IDTPGH FT +R + D AI + D G +PQ++ Y
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 209 PRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE--DNFKGVVDLVKMKAIIW 266
P + NK+DR+ + + + VQ + + + + +
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183
Query: 267 SGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEG 313
+ ++ + I A + E +++ ++ L + + L+
Sbjct: 184 RVTDFASQVSIIPISA----ITGEGIPELLTMLMGLAQQYLREQLKI 226
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 99.1 bits (247), Expect = 5e-26
Identities = 43/67 (64%), Positives = 51/67 (76%)
Query: 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVD 544
P+PVI VAIEPKTKAD +K++ L +LA+E P+F S E T+I GMGEL LEIIVD
Sbjct: 2 PEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVD 61
Query: 545 RLKREFK 551
RLKREFK
Sbjct: 62 RLKREFK 68
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.6 bits (245), Expect = 5e-25
Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 361 SPLD-----LPAMKGTDPENPEATLERAASDDEPFAGLAFKIMSDPFVGSL-TFVRVYAG 414
SP+ + ++ + K++ G F RV+AG
Sbjct: 1 SPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAG 60
Query: 415 TLSAGSYVLNANKGKK---------ERIGRLLEMHANSREDVKVALAGDIIALAGLKDTI 465
T+ +G V + I R++ M E + AG+II L G+ +
Sbjct: 61 TVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFL 120
Query: 466 T-GETLCDADHPILLERM 482
TL ++ ++ M
Sbjct: 121 LKTGTLTTSETAHNMKVM 138
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 97.6 bits (242), Expect = 2e-23
Identities = 49/226 (21%), Positives = 79/226 (34%), Gaps = 34/226 (15%)
Query: 79 EESKRVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------------GEVHE 125
+E + + K++ NI + H+DAGK+T +LF TG K E
Sbjct: 13 QELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWY 72
Query: 126 GTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICL 185
+ +D +E+E+G T+ R +++D PGH + + D + +
Sbjct: 73 LSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLV 132
Query: 186 FDSVAGVEPQSETVWRQ-------ADKYGVPRIC-FVNKMDRLGANFFRTR-DMIVTNLG 236
+ G Q A G+ + +NKMD + R V L
Sbjct: 133 ISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLS 192
Query: 237 ----------AKPLVVQLPVGAEDNFKGVVDLVKMKAIIW-SGEEL 271
+K V +PV A + V D V W G L
Sbjct: 193 MFLRRVAGYNSKTDVKYMPVSAYTG-QNVKDRVDSSVCPWYQGPSL 237
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 89.7 bits (222), Expect = 3e-22
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 385 SDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSR 444
D P FK+ DPF+G + ++R+Y G L G + + + R+ L
Sbjct: 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDL 62
Query: 445 EDVKVALAGDIIALAGLKDTITGETLCDADHPILLERMDFP 485
+V+ A AG ++ + + G L + P E + P
Sbjct: 63 LEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKP---ESEEVP 100
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 79 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.9 bits (210), Expect = 6e-21
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVD 544
PV++VA+E K D+ K+ GL +L++ DP E + ++ G GELHLEI +
Sbjct: 4 VSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT-YMSESGEHIVAGTGELHLEICLQ 62
Query: 545 RLKREFKKL 553
L+ + +
Sbjct: 63 DLEHDHAGV 71
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 84.6 bits (208), Expect = 2e-19
Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 25/195 (12%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
NIG++ H+D GKTT + + K E + T+ E G+ + Y
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTS--KHSEELKRGMTIKLGYAETNIGVCESCKKPEAY 67
Query: 152 WNK---------------HRINIIDTPGHVDFTLEVERALRVLDG-AICLFDSVAGVEPQ 195
+ RI+ ID PGH + ++DG + + + +PQ
Sbjct: 68 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 127
Query: 196 SETVWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPL---VVQLPVGAEDN 251
+ + GV + NK+D + ++ + V +PV A
Sbjct: 128 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHK 187
Query: 252 FKGVVDLVKMKAIIW 266
+ L ++ I
Sbjct: 188 -INIDSL--IEGIEE 199
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 36.5 bits (83), Expect = 0.004
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 312 EGNEPDEETIKKLIRKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPSP 362
E IK+ + VP++ SA + L++ + +Y+ +P
Sbjct: 156 EEALSQYRQIKQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 204
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 77 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 80.3 bits (198), Expect = 2e-19
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 485 PDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVD 544
PDP + VA+ PK + D ++ L KL +EDPS R EE + ++ G GELHL +
Sbjct: 2 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKE 61
Query: 545 RLKREFK 551
RL +++
Sbjct: 62 RL-QDYG 67
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 77.4 bits (189), Expect = 3e-17
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
N+GI HID GKTT ++ + T+ D + + Q+RGITI +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITIDIGFSAFK 55
Query: 152 WNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI 211
+RI ++D PGH D V A ++D A+ + D+ G + Q+ D + +P I
Sbjct: 56 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115
Query: 212 CFVNKMDRLGANFFRTRDMIVTNLGAKPL----VVQLPVGAEDNFKGVVDLVKM 261
+ K D G + +MI+ ++ +P+ A+ F GV +L +
Sbjct: 116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF-GVDELKNL 168
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 71.6 bits (174), Expect = 6e-15
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 16/191 (8%)
Query: 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 147
+ NIG++ H+D GKTT T+ + + T + + + E R +
Sbjct: 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYS 62
Query: 148 TTT--------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSV-AGVEPQSET 198
T+ R++ ID PGH + ++DGAI + + PQ+
Sbjct: 63 TSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 122
Query: 199 VWRQADKYGVPRIC-FVNKMDRLGANFFRTRDMIVTNLGAKPL---VVQLPVGAEDNFKG 254
G I NK++ + + + +P+ A
Sbjct: 123 HLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHG-AN 181
Query: 255 VVDLVKMKAII 265
+ L +KAI
Sbjct: 182 IDVL--VKAIE 190
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 38.4 bits (88), Expect = 8e-04
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 273 AKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGTIAG 332
+ Q + I + + + IK+ I +GT+A
Sbjct: 112 NEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL---ENYRQIKEFI-EGTVAE 167
Query: 333 SFVPVLCGSAFKNKGVQPLLDAVVDYLPS 361
+ P++ SA + L+ A+ D++P+
Sbjct: 168 N-APIIPISALHGANIDVLVKAIEDFIPT 195
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 65.8 bits (159), Expect = 1e-12
Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 40/185 (21%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIG------------------------------E 122
+ + +GKTT T Y NYK+ E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 123 VHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDG- 181
+ + ++ +IDTPG ++ L E +R+++
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 182 ----AICLFDSVAGVEPQSE-----TVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIV 232
+ + D +P + G I +NK+D L
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYF 182
Query: 233 TNLGA 237
++
Sbjct: 183 EDIDY 187
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (123), Expect = 3e-08
Identities = 25/226 (11%), Positives = 64/226 (28%), Gaps = 44/226 (19%)
Query: 93 IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW 152
I I ++GKT+ + + + +
Sbjct: 6 IIIAGPQNSGKTSLLTLLT----------------------TDSVRPTVVSQEPLSAADY 43
Query: 153 NKHRINIIDTPGH----VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-------- 200
+ + ++D PGH + ++ + + G I + DS + + T
Sbjct: 44 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 103
Query: 201 -RQADKYGVPRICFVNKMDRLGANFFRTR--------DMIVTNLGAKPLVVQLPVGAEDN 251
+ + G+ + NK + A ++ V+ + ED
Sbjct: 104 TESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDY 163
Query: 252 FKGVVDLVKMKAII-WSGEELGAKFAYEDIPANLQKMAQEYRSQMI 296
+ +D+++ ++ E I +E+ + +
Sbjct: 164 AENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWREWIDEKL 209
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 9/179 (5%)
Query: 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITS 145
+ D + I+ + GK+T + + + GT ++ G
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAI---LNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60
Query: 146 AATTTYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK 205
T K R+ + ++ V ++ D + + D+ G+ Q + + ++
Sbjct: 61 VDTAGLRRKSRVEPRTVEKYSNYR--VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER 118
Query: 206 YGVPRICFVNKMDRLGAN---FFRTRDMIVTNLGAKPLVVQLPVGAEDNFKGVVDLVKM 261
G + NK D + + + L + A+ + ++
Sbjct: 119 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKG-WNIDRMIDA 176
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (95), Expect = 3e-04
Identities = 14/135 (10%), Positives = 32/135 (23%), Gaps = 17/135 (12%)
Query: 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY 151
N+ + +GK++ + + TM+ + +
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK--------------H 103
Query: 152 WNKHRINIIDTPGHVDFTLEVERALR---VLDGAICLFDSVAGVEPQSETVWRQADKYGV 208
N + D PG + L + + S + + +
Sbjct: 104 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163
Query: 209 PRICFVNKMDRLGAN 223
K+D N
Sbjct: 164 EFYFVRTKVDSDITN 178
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 34.8 bits (80), Expect = 0.004
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 410 RVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIA--LAGLKDTIT- 466
++ AG++ S VL + + + + E++ ++ GD + + G +
Sbjct: 28 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEA---DEEISSSICGDQVRLRVRGDDSDVQT 84
Query: 467 GETLCDADHPI 477
G L +P+
Sbjct: 85 GYVLTSTKNPV 95
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 571 | |||
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.98 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.98 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.97 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.97 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.95 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.94 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.93 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.93 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.92 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 99.89 | |
| d2dy1a4 | 77 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.89 | |
| d1n0ua4 | 79 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.87 | |
| d2bv3a4 | 75 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.87 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.84 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 99.82 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.82 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.81 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 99.8 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.78 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.78 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.77 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.75 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.74 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.74 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.74 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.74 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.73 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.72 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.71 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.71 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.7 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.7 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.67 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.67 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.66 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.66 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.66 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.65 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.63 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.63 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.62 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.62 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.62 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.61 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.6 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.59 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.55 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.54 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.54 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.52 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.48 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.42 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.36 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.3 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.29 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.27 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 99.26 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 99.16 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.16 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.15 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.12 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.09 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 99.07 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 99.05 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 99.04 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 99.03 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 98.96 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.84 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 98.73 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 98.73 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 98.7 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.59 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.58 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.48 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.35 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 98.32 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.28 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.27 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.11 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.09 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.07 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.02 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.94 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.92 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 97.83 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.76 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 97.75 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.5 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.37 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.18 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 97.17 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.14 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 96.97 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.81 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.71 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 96.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.41 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.34 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.32 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.19 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 96.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.08 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.66 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 95.5 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 95.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.03 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.91 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.83 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.69 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.64 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.51 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.47 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.37 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 94.31 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.28 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.13 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.03 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.97 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.91 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.88 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.77 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.7 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.66 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.63 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.6 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.6 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.57 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 93.39 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.28 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.24 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.14 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 93.14 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 93.04 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 93.02 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.01 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 92.98 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 92.97 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.96 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.89 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 92.77 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.71 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 92.71 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.7 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.65 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.5 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.47 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.34 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 92.33 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.3 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 92.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.24 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.19 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 92.03 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.89 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 91.87 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 91.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.77 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.73 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.71 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 91.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 91.64 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.27 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.17 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 91.03 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 90.93 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.78 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.71 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.65 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.63 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.39 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.17 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.14 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.98 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.86 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.73 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.52 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.36 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.25 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.21 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.53 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.11 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 87.51 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.44 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.33 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.23 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.95 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.91 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 86.47 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.68 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.54 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.34 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.79 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.64 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.45 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 84.15 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 84.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 83.96 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 83.78 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.74 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.28 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 83.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.48 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.33 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 80.52 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 80.38 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 80.17 |
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-58 Score=457.34 Aligned_cols=275 Identities=61% Similarity=0.992 Sum_probs=250.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..+++|||+|+||.|+|||||+++|++.+|.+.+.|+++.|++++|+.++|++||+|+......+.|+++++||+|||||
T Consensus 2 ~~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~ 81 (276)
T d2bv3a2 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH 81 (276)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSS
T ss_pred ChhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCch
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeecc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLP 245 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 245 (571)
.||..++..+++.+|++|+||||.+|++.||+.+|++++++++|+++||||||+.++++.+++++|++.|+.+++|+++|
T Consensus 82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~~~P 161 (276)
T d2bv3a2 82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLP 161 (276)
T ss_dssp SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHH
Q 008294 246 VGAEDNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLI 325 (571)
Q Consensus 246 i~~~~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l 325 (571)
|+.+.+|+|++|++.++++.|... .|..+...++|+++.+...++|+.|+|.+++.||++|++||+|++++.+++...+
T Consensus 162 ig~~~~f~GvvDl~~~~a~~~~~~-~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel~~~l 240 (276)
T d2bv3a2 162 IGREDTFSGIIDVLRMKAYTYGND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 240 (276)
T ss_dssp ESCGGGCCEEEETTTTEEEEESSS-SSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCCCceeEEeeccceEEEEecCC-CCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999999999999999763 6788889999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcceeeeeccccCCCChHHHHHHHHHhCCC
Q 008294 326 RKGTIAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPS 361 (571)
Q Consensus 326 ~~~~~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~ 361 (571)
++++..+.++|||||||++|.||+.|||+|++++|+
T Consensus 241 ~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~PS 276 (276)
T d2bv3a2 241 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276 (276)
T ss_dssp HHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999996
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=100.00 E-value=1.7e-54 Score=427.12 Aligned_cols=266 Identities=30% Similarity=0.557 Sum_probs=257.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
+|||+++||.|+|||||+++|++.+|.+.+.|+++.|++++|+.++|++||+|+..+..++.|++++++|||||||.||.
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHHHHHHhCCcceeeeccCCCC
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVVQLPVGAE 249 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~pi~~~ 249 (571)
.++.++++.+|++|+|||+.+|++.||+++|+.+.+.++|.++|+||+|+ .+++.+.++++++.|+ +.+|+++|++.+
T Consensus 82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~-~~~~~~~l~~~~~~lg-~~vp~~~Pi~~~ 159 (267)
T d2dy1a2 82 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG-PILPIDLPLYEG 159 (267)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG-CCCHHHHHHHHHHHHC-SEEECEEEEEET
T ss_pred hhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc-cccchhhhhhHHHHhc-cCcCeEeeeccC
Confidence 99999999999999999999999999999999999999999999999998 5788899999999999 689999999999
Q ss_pred CCcceeeecccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 008294 250 DNFKGVVDLVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAMESYLEGNEPDEETIKKLIRKGT 329 (571)
Q Consensus 250 ~~~~~~id~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e~~l~~~~~~~~~l~~~l~~~~ 329 (571)
.+|+|++|++.++++.|.. ......++|+++.+....+|+.++|.+++.||++|++|++|++++.+++...+++++
T Consensus 160 ~~f~GvvDl~~~~a~~~~~----~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~~ai 235 (267)
T d2dy1a2 160 GKWVGLIDVFHGKAYRYEN----GEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAV 235 (267)
T ss_dssp TEEEEEEETTTTEEEEEET----TEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred CceeEEeecCcceEEEecC----CCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 9999999999999999974 345667899999999999999999999999999999999999999999999999999
Q ss_pred ccCcceeeeeccccCCCChHHHHHHHHHhCCC
Q 008294 330 IAGSFVPVLCGSAFKNKGVQPLLDAVVDYLPS 361 (571)
Q Consensus 330 ~~~~~~Pv~~~Sa~~~~Gv~~Lld~i~~~lP~ 361 (571)
..+.++|||||||.++.||+.|||.|++++|+
T Consensus 236 ~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~Ps 267 (267)
T d2dy1a2 236 RRGLLYPVALASGEREIGVLPLLELILEALPS 267 (267)
T ss_dssp HTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999996
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.6e-34 Score=289.73 Aligned_cols=254 Identities=28% Similarity=0.359 Sum_probs=187.2
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee--------------
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-------------- 152 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-------------- 152 (571)
.+++|||+|+||.|+|||||+++|++.+|.+...+... ..++|+.++|++||+|+.....++.|
T Consensus 14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~--~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~ 91 (341)
T d1n0ua2 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE--ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 91 (341)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred cccCcEEEEEeCCCCcHHHHHHHHHHHCCCcccccccc--ccccccchhHHhcCceEeCCEEEEEeccCcccccchhccc
Confidence 45699999999999999999999999999877665543 34789999999999999999999865
Q ss_pred --cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccchhhhHHH
Q 008294 153 --NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDM 230 (571)
Q Consensus 153 --~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 230 (571)
+++.++|||||||.||..++.++++.+|+||+||||.+|++.||+++|+++...++|+++|+||+|+...++....++
T Consensus 92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~~~~~~ 171 (341)
T d1n0ua2 92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 171 (341)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccccHHhhHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcceeeeccCCCCC-Ccceeee-cccceeEEecCCCCCceeeeecccHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q 008294 231 IVTNLGAKPLVVQLPVGAED-NFKGVVD-LVKMKAIIWSGEELGAKFAYEDIPANLQKMAQEYRSQMIETIVELDDEAME 308 (571)
Q Consensus 231 i~~~l~~~~~~~~~pi~~~~-~~~~~id-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~l~e 308 (571)
+.+.++....+++.|++... ...+.+. .....+++|.++.+||.|++..++..|.+... .+.+.+.
T Consensus 172 ~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~Ftl~~fa~~y~~k~~------------~~~~~l~ 239 (341)
T d1n0ua2 172 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFG------------VDKAKMM 239 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTT------------SCHHHHH
T ss_pred HHHHHcCccccccceeeecccccccccccCcccCceEecccccCeEEeeHHHHHHHHHHhC------------CCHHHHH
Confidence 99999999999999986532 2223333 34566799999999999999888776665432 3444555
Q ss_pred HHhcCCCCCHHHHHHHHHhhcccCcce---eeeeccccCCCChHHHHHHHHHhCCCCCC
Q 008294 309 SYLEGNEPDEETIKKLIRKGTIAGSFV---PVLCGSAFKNKGVQPLLDAVVDYLPSPLD 364 (571)
Q Consensus 309 ~~l~~~~~~~~~l~~~l~~~~~~~~~~---Pv~~~Sa~~~~Gv~~Lld~i~~~lP~p~~ 364 (571)
++|+|...-..+ ..++. +...++++....++-+|+-|.+.++.+..
T Consensus 240 ~~LWGd~y~~~~----------~kk~~~~~~~~~~~~lk~~FVqfILepI~ki~~~~~~ 288 (341)
T d1n0ua2 240 DRLWGDSFFNPK----------TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMN 288 (341)
T ss_dssp HHTSSSCEEETT----------TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHT
T ss_pred HHhccCcccccc----------cceeeccCCcccCCcccceeeeeeHHHHHHHHHHHhh
Confidence 555553111000 01111 12234444555677888888888776654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=1.8e-32 Score=260.49 Aligned_cols=146 Identities=28% Similarity=0.391 Sum_probs=130.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...||+++||+|||||||+++|++.+|.....+++.. ...+|+.++|++||+|++.....+.|++++++|||||||.+|
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~-~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCC-HHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhh-hhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 4579999999999999999999999888777777654 356799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccc--hhhhHHHHHHHh
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN--FFRTRDMIVTNL 235 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~--~~~~~~~i~~~l 235 (571)
..++.++++.+|++|+||||.+|++.||+++|..+...++|. ++++||||+...+ ++++.+++++.+
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l 150 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 150 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985 5679999996533 455666666655
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.97 E-value=1.9e-31 Score=251.20 Aligned_cols=131 Identities=28% Similarity=0.377 Sum_probs=114.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...||+++||+|||||||+++|++..+.. .+........++..++|++||+|++.....+.|.++.++++|||||.+|
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~--~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f 79 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEG--GGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY 79 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHT--TSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHc--CcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHH
Confidence 35799999999999999999998654321 1222233456778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCC-eEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVP-RICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~ 221 (571)
..++.++++.+|++|+||||.+|++.||+++|..+...+++ +|+++||+|+..
T Consensus 80 ~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~ 133 (196)
T d1d2ea3 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (196)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccc
Confidence 99999999999999999999999999999999999998875 667899999864
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-30 Score=252.62 Aligned_cols=135 Identities=30% Similarity=0.338 Sum_probs=121.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcce-------------eeeeecCcccccchhhhhhhceeEeeceEEEeecCeE
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYK-------------IGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHR 156 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~-------------~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 156 (571)
..||+++||+|+|||||+++|++.+|.+.. .+....+.+.+|+.++|++||+|+..+...+.|.+++
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 85 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 85 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence 579999999999999999999999987653 2334455678999999999999999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCCe-EEEEecCCccccch
Q 008294 157 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG-------VEPQSETVWRQADKYGVPR-ICFVNKMDRLGANF 224 (571)
Q Consensus 157 i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g-------~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~~ 224 (571)
++|||||||.||..++.++++.+|++|+||||.+| +.+||+++|..++..++|. |+++||||+.+++.
T Consensus 86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~ 161 (239)
T d1f60a3 86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 161 (239)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCH
Confidence 99999999999999999999999999999999987 5689999999999999985 56899999987653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.95 E-value=2.9e-29 Score=242.58 Aligned_cols=134 Identities=24% Similarity=0.288 Sum_probs=103.2
Q ss_pred eeE--EEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhcee-EeeceEEEeecCeEEEEEcCCCCC
Q 008294 90 YRN--IGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGIT-ITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 90 ~~~--I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t-~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
+|| |||+||+|||||||+|+|+...+.....+.+.......+.. .+...+++ .......+.+++.+++|+|||||.
T Consensus 3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIP-MDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEE-HHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccc-cccccccccccccceeeccccccccccccccee
Confidence 455 99999999999999999998777665555443322222222 22222222 122223356678899999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccch
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANF 224 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~ 224 (571)
+|..++..++..+|++|+||||.+|++.+++++|..+...++|+|+|+||+|+...+.
T Consensus 82 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~ 139 (227)
T d1g7sa4 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR 139 (227)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC
T ss_pred cccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchh
Confidence 9999999999999999999999999999999999999999999999999999987654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.95 E-value=3.5e-27 Score=225.99 Aligned_cols=139 Identities=28% Similarity=0.317 Sum_probs=113.4
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCccee-------eeee--------cCcccccchhhhhhhceeEeeceEE
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKI-------GEVH--------EGTATMDWMEQEQERGITITSAATT 149 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~-------g~~~--------~g~~~~d~~~~e~~~g~t~~~~~~~ 149 (571)
...+...+|+++||+|+|||||+++|++.+|.+... .... .....+|..+.|+++|+|+......
T Consensus 4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 83 (222)
T d1zunb3 4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 83 (222)
T ss_dssp TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence 345678899999999999999999999998876431 1111 1123456668899999999999999
Q ss_pred EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCe-EEEEecCCccccc
Q 008294 150 TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPR-ICFVNKMDRLGAN 223 (571)
Q Consensus 150 ~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~ 223 (571)
+.+.++.++|||||||.+|..++.+++..+|++|+||||.+|+..||.+++..+...+++. ++++||+|+...+
T Consensus 84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 6679999987643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.94 E-value=1.6e-27 Score=229.68 Aligned_cols=135 Identities=29% Similarity=0.317 Sum_probs=106.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee-------------ecCcccccchhhhhhhceeEeeceEEEeecCe
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV-------------HEGTATMDWMEQEQERGITITSAATTTYWNKH 155 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~-------------~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 155 (571)
...||+++||+|+|||||+++|++.+|.+...+.. ..++..+|+.+.|+++|+|+......++++++
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 35799999999999999999999998876543211 12235688999999999999999999999999
Q ss_pred EEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-eEEEEecCCccccc
Q 008294 156 RINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVP-RICFVNKMDRLGAN 223 (571)
Q Consensus 156 ~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~ 223 (571)
.++|||||||.+|..++.++++.+|++|+|||+.+|+ ..|+++++..+...+++ +|+++||||+...+
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcc
Confidence 9999999999999999999999999999999999995 67899999999998886 66779999987543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.94 E-value=6e-27 Score=217.73 Aligned_cols=123 Identities=31% Similarity=0.468 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..|||++|++|||||||+|+|+.... +...+..+.++.+|++.......+.+.+..++++|||||.+|.
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 73 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIAS-----------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLI 73 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEETTEEEEECCCSSHHHHH
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcC-----------ceecccccceeeeeeeccccccccccCCccccccccccccccc
Confidence 46999999999999999999973211 2334566778889999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
.++..++..+|++++|+|+.+|+..|+++++..+...++|+++|+||+|+...+
T Consensus 74 ~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~ 127 (179)
T d1wb1a4 74 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127 (179)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH
T ss_pred cchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHH
Confidence 999999999999999999999999999999999999999999999999997654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=4e-26 Score=216.82 Aligned_cols=136 Identities=22% Similarity=0.250 Sum_probs=89.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcce-----eeeeecCcccc---cchhhhhhhceeEeec-----eEEEeecC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYK-----IGEVHEGTATM---DWMEQEQERGITITSA-----ATTTYWNK 154 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~-----~g~~~~g~~~~---d~~~~e~~~g~t~~~~-----~~~~~~~~ 154 (571)
+...||+|+||+|+|||||+++|+...+.... ......|.... .....+..++...... ........
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 34579999999999999999999743221110 00000000000 0000000111110000 00011124
Q ss_pred eEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-CeEEEEecCCccccc
Q 008294 155 HRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGV-PRICFVNKMDRLGAN 223 (571)
Q Consensus 155 ~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-p~ivviNK~D~~~~~ 223 (571)
+++++||||||.+|..++.+++..+|++|+|||+.+|+ +.||++++..+...++ |++|++||+|+...+
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~ 156 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 156 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccch
Confidence 67999999999999999999999999999999999997 8899999999999997 667789999997643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.93 E-value=5.9e-26 Score=213.93 Aligned_cols=119 Identities=28% Similarity=0.341 Sum_probs=94.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee----------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW---------------- 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~---------------- 152 (571)
...|||++||+|||||||+|+|++. ..+....+.++|+|.......+.+
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~---------------~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC---------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhh---------------hhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeee
Confidence 3569999999999999999999621 123334455566666554443322
Q ss_pred -------cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCC-eEEEEecCCcccc
Q 008294 153 -------NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-EPQSETVWRQADKYGVP-RICFVNKMDRLGA 222 (571)
Q Consensus 153 -------~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~ 222 (571)
...+++++|||||.+|..++.+++..+|++++|||+.+|. ..++++++..+...++| +++++||+|+...
T Consensus 69 ~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~ 147 (195)
T d1kk1a3 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 147 (195)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred eeeeeecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhh
Confidence 2356999999999999999999999999999999999997 56799999999999988 4667999998764
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.92 E-value=4.1e-26 Score=222.06 Aligned_cols=138 Identities=25% Similarity=0.308 Sum_probs=90.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceee-------------eeecCcccccchhhhhhhceeEeeceEEEee
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIG-------------EVHEGTATMDWMEQEQERGITITSAATTTYW 152 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g-------------~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~ 152 (571)
..++..||+++||+|||||||+++|++.+|.+.... ........+|....|+++|+++......+.|
T Consensus 20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~ 99 (245)
T d1r5ba3 20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 99 (245)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence 345577999999999999999999999998765421 1112235678889999999999999999999
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCCCe-EEEEecCCccccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGV-------EPQSETVWRQADKYGVPR-ICFVNKMDRLGAN 223 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~ 223 (571)
.++.++++|||||.+|..++.+++..+|++++|||+.+|+ ..||++++..+...++|. ++++||||+..++
T Consensus 100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~ 178 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 178 (245)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccc
Confidence 9999999999999999999999999999999999999986 459999999999999985 4789999997654
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=2.1e-23 Score=179.03 Aligned_cols=106 Identities=56% Similarity=0.928 Sum_probs=98.6
Q ss_pred cccccccCCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEE
Q 008294 377 EATLERAASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDII 456 (571)
Q Consensus 377 ~~~~~~~~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv 456 (571)
++..++.+++++||+|+|||+.+|++.|+++|+|||+|+|+.||.|++.++++.+||.+|+.++|.++.++++|.||||+
T Consensus 14 ~~~v~~~pd~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ 93 (121)
T d2bv3a1 14 GEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLG 93 (121)
T ss_dssp CCEEECCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECEEEEECSSCEEEESEEETTCEE
T ss_pred CCEEEeeCCCCCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEccCCCEEEEeeeeeeecccccEeeEeccccce
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccceecCCCCc-ccccCC
Q 008294 457 ALAGLKDTITGETLCDADHP-ILLERM 482 (571)
Q Consensus 457 ~i~gl~~~~~Gdtl~~~~~~-~~l~~~ 482 (571)
+|.|++++.+|||||+.++| +.+++|
T Consensus 94 ~i~gl~~~~~GDTl~~~~~p~~~le~i 120 (121)
T d2bv3a1 94 AVVGLKETITGDTLVGEDAPRVILESI 120 (121)
T ss_dssp EEESCSSCCTTCEEEETTSCCCBCSCC
T ss_pred EEeccCCceeCCEEecCCCCceECCCC
Confidence 99999999999999998886 456655
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.89 E-value=7.6e-24 Score=166.57 Aligned_cols=77 Identities=34% Similarity=0.592 Sum_probs=74.6
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEecCeE
Q 008294 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHPKST 561 (571)
Q Consensus 484 ~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~p~i 561 (571)
+|+|+++++|+|.+++|++||.+||++|++|||||++++|++|||++|+||||+|||++++||| +||+++++++|.|
T Consensus 1 iP~Pv~~~ai~p~~~~d~~kl~~aL~~L~~eDPsl~v~~d~et~e~vl~g~GelHLei~~~rL~-~~~v~v~~~~P~V 77 (77)
T d2dy1a4 1 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKV 77 (77)
T ss_dssp CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHHHHHHhhcCeEEEEEcCCchhheEeccccchHHHHHHHHH-HcCCcEEeeCCcC
Confidence 4789999999999999999999999999999999999999999999999999999999999996 6999999999986
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.1e-22 Score=160.40 Aligned_cols=73 Identities=33% Similarity=0.591 Sum_probs=70.7
Q ss_pred CceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHh-CceEEEecC
Q 008294 486 DPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREF-KKLMLVHPK 559 (571)
Q Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~-~vev~~~~p 559 (571)
.|+++++|+|.+++|++||.+||++|++||||++++. +||||++|+||||+|||++++||+++| |+++++++|
T Consensus 5 ~Pv~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v~~-~etge~il~G~GelHLev~~~rL~~~f~~vev~~~~P 78 (79)
T d1n0ua4 5 SPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYM-SESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 78 (79)
T ss_dssp SCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEE-CTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECC
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEE-cCCCCcEEecCCHHHHHHHHHHHHHHhCCceEEeCCC
Confidence 6999999999999999999999999999999999975 589999999999999999999999999 899999998
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=3.3e-24 Score=167.09 Aligned_cols=75 Identities=59% Similarity=0.855 Sum_probs=41.8
Q ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHHHhhCCeeEEEEeCCCCeEEEEEecHHHHHHHHHHHHhHhCceEEEec
Q 008294 484 FPDPVIKVAIEPKTKADIDKMANGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKKLMLVHP 558 (571)
Q Consensus 484 ~~~Pv~~~avep~~~~d~~kl~~~L~kl~~eDpsl~~~~~~etge~il~g~GelhLev~~~rL~~~~~vev~~~~ 558 (571)
+|+|+++++|+|.+++|++||.+||++|++|||||++++|++|||++|+||||+|||++++||+++|||+++++.
T Consensus 1 vP~Pv~~~ai~p~~~~D~~kl~~aL~~L~~EDPsl~~~~d~et~e~il~g~GelHLev~~~rL~~~~~vev~~gk 75 (75)
T d2bv3a4 1 VPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANVGK 75 (75)
T ss_dssp CCCCCEECBCCC-------------------CCSCEEEECSSSSCEEEEBSSHHHHTTCC------------CCC
T ss_pred CCCCcEEEEEEECCHhHHHHHHHHHHHHHhhCCceEEEEcCcCCcEEEeeCCHhHHHHHHHHHHHHHCCceEeCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999998863
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=2.6e-20 Score=172.05 Aligned_cols=115 Identities=23% Similarity=0.217 Sum_probs=87.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc-
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF- 168 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f- 168 (571)
...|+++|++|+|||||+|+|+ |....... ...++|.........+.+..+.+|||||+.+.
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~---~~~~~~~~--------------~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~ 67 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLL---GVKVAPIS--------------PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH---TSCCSCCC--------------SSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHh---CCCceeec--------------ccCCcccccccceeeeeeeeeeecccccccccc
Confidence 4579999999999999999997 22111111 11344555555666778899999999998653
Q ss_pred -------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCCeEEEEecCCccc
Q 008294 169 -------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKY--GVPRICFVNKMDRLG 221 (571)
Q Consensus 169 -------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++|+|+|+.++...+...++..++.. ++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~ 129 (178)
T d1wf3a1 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129 (178)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhccccccc
Confidence 33355667889999999999999988887777777654 789999999999864
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2.6e-20 Score=163.25 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=92.6
Q ss_pred ccccccccCCCCCCeEEEEEEEeecCCCce-EEEEEEecceeCCCCEEEeCCCC---------ceeecceEEEeccCcee
Q 008294 376 PEATLERAASDDEPFAGLAFKIMSDPFVGS-LTFVRVYAGTLSAGSYVLNANKG---------KKERIGRLLEMHANSRE 445 (571)
Q Consensus 376 ~~~~~~~~~~~~~p~~~~V~k~~~d~~~G~-i~~~rV~sG~l~~gd~v~~~~~~---------~~~~i~~i~~~~g~~~~ 445 (571)
+.....++||+++||+++|+|+..+++.|+ +++||||||+|++||.|++.+.+ ..++|++||.++|++++
T Consensus 21 ~~~~~i~~cd~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~ 100 (138)
T d1n0ua1 21 ANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVE 100 (138)
T ss_dssp HHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEE
T ss_pred hhhhhhhccCCCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCcee
Confidence 344566789999999999999999999998 59999999999999999975432 23689999999999999
Q ss_pred ecCeecCCCEEEEeCCCC-ccccceecCCCCcccccC
Q 008294 446 DVKVALAGDIIALAGLKD-TITGETLCDADHPILLER 481 (571)
Q Consensus 446 ~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~~~~~~l~~ 481 (571)
+|++|.|||||+|.|+++ +.+|+|||+..++.+|+.
T Consensus 101 ~v~~a~AGdIvai~Gl~~~i~k~~Tl~~~~~~~pl~~ 137 (138)
T d1n0ua1 101 PIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 137 (138)
T ss_dssp EESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCC
T ss_pred eEeEEecCcEEEEeccccceeccceecCCCCCccCCC
Confidence 999999999999999999 456999999988776643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=2.3e-19 Score=166.43 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=88.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC-
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD- 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~- 167 (571)
+..+|+|+|++|||||||+|+|+ +........ ..+.|.......+.+++..+.++||||+..
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~---~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~ 69 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAIL---NKERALVSP--------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH---TSTTEEECC--------------CC------CCEEEEETTEEEEESSCSCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---CCCcceeec--------------ccccccccceeeeccCCceeeeeccCCcccc
Confidence 45789999999999999999997 221111110 112344444556677899999999999743
Q ss_pred -----------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 -----------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 -----------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+...+..+++.+|++++|+|+.++...+...++..+...+.|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~ 134 (186)
T d1mkya2 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 134 (186)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred ccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhc
Confidence 345678889999999999999999999999999999999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=1.3e-19 Score=166.12 Aligned_cols=113 Identities=22% Similarity=0.293 Sum_probs=86.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f--- 168 (571)
+|+++|++|||||||+|+|+ |.... ......+.|.......+......+.++||||..+.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~---~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 64 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLV---KKKKA--------------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHH---C----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGG
T ss_pred EEEEECCCCCCHHHHHHHHh---CCCcc--------------eecccCceeeccccccccccccccccccccceeeeecc
Confidence 68999999999999999996 21111 11223455666667777888999999999996442
Q ss_pred ------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 ------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+..++..+|++++++|+.++...+.+.++..++..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~ 123 (171)
T d1mkya1 65 IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123 (171)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred ccccccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhh
Confidence 34456667889999999999999999999999999999999999999999864
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.80 E-value=4.3e-20 Score=153.86 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEeCCCC
Q 008294 384 ASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKD 463 (571)
Q Consensus 384 ~~~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~ 463 (571)
|+.++||+|+|||+.+|++.|+++|+|||+|+|+.||.|++.+ ..+++.+++.++|.++++++++.|||||+|.|+++
T Consensus 4 ~~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~--~~~~~~~~~~~~~~~~~~v~~~~aGdI~~v~g~~~ 81 (103)
T d2dy1a1 4 RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEG 81 (103)
T ss_dssp HHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTT
T ss_pred CCCCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEee--cccccceeeeeecCcceecCEecCCCEEEEeCCCC
Confidence 4578999999999999999999999999999999999998764 35789999999999999999999999999999999
Q ss_pred ccccceecCCCCccc
Q 008294 464 TITGETLCDADHPIL 478 (571)
Q Consensus 464 ~~~Gdtl~~~~~~~~ 478 (571)
+.+|||||+.+.|..
T Consensus 82 ~~iGDTl~~~~~p~~ 96 (103)
T d2dy1a1 82 LHRGMVLWQGEKPES 96 (103)
T ss_dssp CCTTCEEESSSCCCG
T ss_pred CccCCEEcCCCCcCc
Confidence 999999999877643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.78 E-value=3.2e-18 Score=157.12 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=83.7
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
+.++..+|+++|.+|+|||||+++|.. +..... . ...|++ ...+.+.+..+.+||+||+
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~--~~~~~~-~--------------~~~~~~----~~~i~~~~~~~~i~d~~g~ 70 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLAS--EDISHI-T--------------PTQGFN----IKSVQSQGFKLNVWDIGGQ 70 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCC--SCCEEE-E--------------EETTEE----EEEEEETTEEEEEEECSSC
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhc--CCCCcc-e--------------eeeeee----EEEeccCCeeEeEeecccc
Confidence 445567899999999999999999951 111110 0 011222 2345667899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
..|...+...++.+|++|+|+|+++....... ..+.... ..++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~ 132 (176)
T d1fzqa_ 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (176)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred ccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc
Confidence 99999999999999999999999875443322 2233222 247899999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=1.5e-18 Score=162.30 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=83.0
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
.+.|...+++|+++|++|+|||||+|+|+ |.... .. .....+.|..... ......+.++|+
T Consensus 16 ~~~p~~~~~~I~lvG~~n~GKSTLin~L~---g~~~~-~~------------~~~~~~~t~~~~~---~~~~~~~~~~d~ 76 (195)
T d1svia_ 16 EQYPEGGLPEIALAGRSNVGKSSFINSLI---NRKNL-AR------------TSSKPGKTQTLNF---YIINDELHFVDV 76 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHH---TC--------------------------CCEEE---EEETTTEEEEEC
T ss_pred hHCCCCCCCEEEEECCCCCCHHHHHHHhc---CCCce-EE------------eecccceeeeccc---ccccccceEEEE
Confidence 55777888999999999999999999996 21110 00 0001122222221 122355677888
Q ss_pred CCCCC-------------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 163 PGHVD-------------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 163 PG~~~-------------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
+|... +......+...+|++++|+|+.+++..++.++++.+...++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~ 148 (195)
T d1svia_ 77 PGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred EeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccC
Confidence 88532 122334445567999999999999999999999999999999999999999864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=1.3e-18 Score=160.78 Aligned_cols=108 Identities=25% Similarity=0.394 Sum_probs=78.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc---
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF--- 168 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f--- 168 (571)
+|+++|++|+|||||+|+|+ |.....+ ...|+|... ..+.+. .+.++||||+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~---~~~~~~~---------------~~~g~T~~~--~~~~~~--~~~ivDtpG~~~~~~~ 59 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLT---GKKVRRG---------------KRPGVTRKI--IEIEWK--NHKIIDMPGFGFMMGL 59 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHH---SCCCSSS---------------SSTTCTTSC--EEEEET--TEEEEECCCBSCCTTS
T ss_pred EEEEECCCCCCHHHHHHHHh---CCCceee---------------CCCCEeecc--cccccc--cceecccCCceecccc
Confidence 68999999999999999996 3221111 123445443 233444 4678999997431
Q ss_pred ------------HHHHHHHHHhcCeEEEEEeCC-----------CCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 169 ------------TLEVERALRVLDGAICLFDSV-----------AGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ------------~~~~~~~l~~~D~~ilVvda~-----------~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++++|+|+. .+...++.+++..+...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~ 135 (184)
T d2cxxa1 60 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 135 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred ccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhh
Confidence 222345567889999999986 46777888888999999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=9.3e-18 Score=154.77 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeece-EEEeecCeEEEEEcCCCCCC--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA-TTTYWNKHRINIIDTPGHVD-- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~i~liDTPG~~~-- 167 (571)
.+|+|+|++|+|||||+|+|+ |......... +.|..... ......+..+++|||||+.+
T Consensus 2 ~~VaivG~~nvGKSTLin~L~---~~~~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~ 63 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMT---RAHPKIAPYP---------------FTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHC---SSCCEECCCT---------------TCSSCCEEEEEECSSSCEEEEEECCCCCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCCceeccC---------------CCceeeeeceeeecCCCeEEEcCCCeeecCc
Confidence 479999999999999999994 4333222211 11222222 22233567899999999643
Q ss_pred -----cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH-----HhcCCCeEEEEecCCcccc
Q 008294 168 -----FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA-----DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -----f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~-----~~~~~p~ivviNK~D~~~~ 222 (571)
....+...+..+|++++++|+..............+ ...++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 128 (180)
T d1udxa2 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 128 (180)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH
Confidence 345677888999999999998765433222222222 2346899999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.74 E-value=1.8e-17 Score=150.55 Aligned_cols=112 Identities=20% Similarity=0.149 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|+.|+|||||+++|.... ... ++ ..|+......+..++..+++||+||+..|..
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~--~~~-----------~~-------~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 62 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQ--FNE-----------DM-------IPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCC-----------SC-------CCCCSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCC-----------cc-------cccceeeeeeeeeeeEEEEEeeccccccccc
Confidence 589999999999999999997321 110 00 0133334445667889999999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
.+...+..+|++++|+|+.+..... ....+..+. ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~ 119 (164)
T d1zd9a1 63 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119 (164)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred cccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence 8999999999999999998643322 222333332 247899999999998653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.1e-17 Score=150.99 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF-- 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f-- 168 (571)
.+|+++|++|||||||+|+|+ |....... ...|.+.......+.+.+..+.++||||..+.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~---~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 64 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALA---GREAAIVT--------------DIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 64 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHH---TSCCSCCC--------------SSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHh---CCCceEee--------------cccccccceEeeeeeccCceeeeccccccccccc
Confidence 479999999999999999997 22111111 11344555555667788999999999998764
Q ss_pred ------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 169 ------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++..+|++++++|+...........|..... .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 65 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred cchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhh
Confidence 2334566788999999999998766655555544433 3799999999999754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=7.5e-18 Score=153.89 Aligned_cols=116 Identities=17% Similarity=0.059 Sum_probs=79.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++|+......... ...|.+..............+++|||||+.+|.
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~ 68 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFV----------------STVGIDFKVKTIYRNDKRIKLQIWDTAGQERYR 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCC----------------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccc----------------cccccceeeEEEEeecceEEEEEEECCCchhhH
Confidence 5689999999999999999997432110000 012334444333333345789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
.....+++.+|++|+|+|..+........ .+.... ....|+++|+||+|+..
T Consensus 69 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 124 (169)
T d3raba_ 69 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124 (169)
T ss_dssp HHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc
Confidence 88888999999999999998753332222 223232 23677888999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.74 E-value=3.8e-18 Score=155.02 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|. +.... ..+.|+......+.+++..+.+|||||+..+.
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~---~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 60 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFN---GEDVD------------------TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHT---TCCCS------------------SCCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHc---CCCCC------------------cccceEeeeeeeccccccceeeeecCcchhhh
Confidence 3579999999999999999995 21100 01234444555667889999999999998887
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch-hHHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP-QSETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~-~~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
......++.+|++++|+|+.+-... .....|.... ..++|+++|+||+|+...
T Consensus 61 ~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 118 (165)
T d1ksha_ 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118 (165)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc
Confidence 7778888999999999999864332 2233343332 357899999999998653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.73 E-value=2.4e-17 Score=151.05 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=81.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|.. +.... ...|.........+....+.+|||||+..+.
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~ 70 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKL--GQSVT-------------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTC--CCCEE-------------------EEEETTEEEEEEEETTEEEEEEEESCCGGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc--CCCCC-------------------ccceeeeeEEEeeccceeeEEecCCCcchhh
Confidence 46799999999999999999962 21111 0113333344556678999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
......++.+|++++|+|++........ ..|.... ..+.|+++|+||+|+..+
T Consensus 71 ~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~ 128 (173)
T d1e0sa_ 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128 (173)
T ss_dssp HHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc
Confidence 9999999999999999999764333322 2233322 247899999999998653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3e-17 Score=148.00 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC---
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD--- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~--- 167 (571)
.+|+++|++|+|||||+|+|+.... ...+ ...|.|.......+...+..+.++||||+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 63 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDR---AIVT--------------DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN 63 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB---CCCC--------------CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---eeee--------------ccccccccceeEEEEeCCeeEEeccccccccCCc
Confidence 3799999999999999999973211 1111 1124455555666777899999999999632
Q ss_pred ------cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCccc
Q 008294 168 ------FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 ------f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 221 (571)
....+..++..+|++++|+|+.++...+....+..+ ...++++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~ 121 (160)
T d1xzpa2 64 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 121 (160)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccc
Confidence 235567778999999999999999888877776654 4578899999999865
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.6e-17 Score=149.14 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
+.+|+++|..|+|||||+++|.... .... ....+.+. .....+....+.+.+|||||+.+|.
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~---~~~~--------------~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e~~~ 62 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVE---DGPE--------------AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGR 62 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC--------------------------CEEE-EEEEEETTEEEEEEEEECC------
T ss_pred CeEEEEECCCCcCHHHHHHHHhCCc---cCCc--------------CCeeeeee-cceeeccccccceeeeecccccccc
Confidence 3579999999999999999996211 0000 00011111 1112222345788999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|.++.........| ..+.. .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 119 (168)
T d2gjsa1 63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119 (168)
T ss_dssp -CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG
T ss_pred eecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhh
Confidence 8889999999999999999875444433333 22222 3579999999999864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.71 E-value=1e-17 Score=154.84 Aligned_cols=116 Identities=20% Similarity=0.109 Sum_probs=80.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
..++..+|+++|.+|+|||||+++|. +.... . ...|.........+++..+.+|||||+
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~---~~~~~--~----------------~~~t~~~~~~~~~~~~~~~~i~D~~g~ 71 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQ---IGEVV--T----------------TKPTIGFNVETLSYKNLKLNVWDLGGQ 71 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTC---CSEEE--E----------------ECSSTTCCEEEEEETTEEEEEEEEC--
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHh---cCCCC--c----------------cccccceEEEEEeeCCEEEEEEecccc
Confidence 44556789999999999999999994 21110 0 011223334455678899999999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
..|.......++.+|++++|+|+++....... ..|..... .+.|+++|+||+|+..+
T Consensus 72 ~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~ 133 (182)
T d1moza_ 72 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133 (182)
T ss_dssp --CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred cccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence 99988888889999999999999876554432 33333322 36899999999998653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.3e-17 Score=148.76 Aligned_cols=119 Identities=16% Similarity=0.075 Sum_probs=80.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
|+.+..+|+++|..|+|||||+++|+......... + ...........+....+.+.+|||+|+
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~-------------~----t~~~~~~~~~~~~~~~~~l~~~d~~g~ 64 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-------------P----TIEDSYTKICSVDGIPARLDILDTAGQ 64 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC-------------T----TCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccc-------------c----ccccceeeEeccCCeeeeeeccccccc
Confidence 34556789999999999999999998432111000 0 001111112222223467889999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.+|.......++.+|++|+|+|.++.........| ..+. ..++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~ 125 (173)
T d2fn4a1 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 125 (173)
T ss_dssp TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred cccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh
Confidence 99988899999999999999999875444433333 2222 35789999999999754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=5.6e-17 Score=147.64 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|+......... ...+.+..............+.+|||+|+.++..
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 68 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNIN----------------PTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA 68 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCC----------------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccc----------------cccccccccccccccccccceeeeecCCchhhhH
Confidence 579999999999999999998432111000 0112222222222223446678999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HH---HhcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR-QA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~---~~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++|+|+|..+.........|. .. ...+.|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 123 (167)
T d1z0ja1 69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123 (167)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc
Confidence 8999999999999999998644444433332 22 235788999999999854
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6.4e-17 Score=146.64 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=78.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|..|+|||||+++|+......... ...+.+..............+.+|||+|+.++...
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 65 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQ----------------ATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 65 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCC----------------CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccc----------------cceeeeccceeeccCCCceeeeecccCCcchhccc
Confidence 68999999999999999998322110000 00112222222222224578899999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH---hcCCCeEEEEecCCccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
....++.+|++++|+|..+......... |.... ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (164)
T d1yzqa1 66 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 119 (164)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred hHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh
Confidence 9999999999999999987654443332 33332 24789999999999854
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-17 Score=149.75 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++|+......... ...+.++......+....+.+.+|||||+.+|.
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~ 68 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG----------------ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR 68 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCC----------------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccc----------------ccccceEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 5789999999999999999998422111100 001222333333333345678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHH---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|..+...... ...+..+. ..++|+++|.||+|+..
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~ 124 (171)
T d2ew1a1 69 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 124 (171)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc
Confidence 888889999999999999986443322 23333333 23678999999999754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=3.2e-17 Score=151.74 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-cCeEEEEEcCCCCCC--
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW-NKHRINIIDTPGHVD-- 167 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~liDTPG~~~-- 167 (571)
.+|||+|++|+|||||+|+|. |.....+. ..+.|.........+ ++..+++|||||+.+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~---~~~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~ 63 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVS---SAKPKIAD---------------YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSE---EECCEESS---------------TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHh---CCCCceec---------------CCCceEeeeeceeEecCCcEEEEecCCCcccCc
Confidence 479999999999999999994 32222111 123344444434433 557899999999632
Q ss_pred -----cHHHHHHHHHhcCeEEEEEeCCC--CCchhHHHH----HHHHH---hcCCCeEEEEecCCcccc
Q 008294 168 -----FTLEVERALRVLDGAICLFDSVA--GVEPQSETV----WRQAD---KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 -----f~~~~~~~l~~~D~~ilVvda~~--g~~~~~~~~----~~~~~---~~~~p~ivviNK~D~~~~ 222 (571)
........+..++.++++++... +........ +..+. ..++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~ 132 (185)
T d1lnza2 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 132 (185)
T ss_dssp TCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred hHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH
Confidence 23456677888999998887763 222222111 11111 136799999999998653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=9.8e-17 Score=145.84 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=78.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+......... ...+.+..............+.+|||||+.+|.
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 67 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCP----------------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR 67 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCT----------------TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccc----------------ccccccceeEEEEECCEEEEEEEeccCCchhHH
Confidence 5689999999999999999998432111100 001112222222232334689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|..+....... ..+..+. ....|++++.||+|+..
T Consensus 68 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 123 (166)
T d1z0fa1 68 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 123 (166)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh
Confidence 9999999999999999999874333222 2233332 34678899999999754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=3.5e-17 Score=148.52 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++|+....... +. ...|.+..............+.+|||+|+.++..
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~-------------~~---~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 66 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKD-------------YK---KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 66 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCC-------------SS---CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-------------cc---cccccccceeeeeecCceeeeeeeccCCccchhh
Confidence 4799999999999999999984221100 00 0011122222222222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh--cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK--YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+.........| ..+.+ .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~ 120 (164)
T d1z2aa1 67 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 120 (164)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred hhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCccc
Confidence 888899999999999999875443333322 33333 4899999999999854
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.2e-16 Score=144.00 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|+........ ....+.+..............+.+|||+|+.+|..
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 70 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQ----------------ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccc----------------ccccccccccceeeccceEEEEEeccCCCchhhhh
Confidence 47999999999999999999832211000 01123333333333333456789999999999998
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~---~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+........ .+..+. ..++|+++|.||+|+..
T Consensus 71 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 125 (170)
T d1r2qa_ 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc
Confidence 8899999999999999988654433332 333332 23688999999999754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-16 Score=146.70 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=79.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+.......... ..+.+..............+.+|||||+.+|.
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 68 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNH----------------TIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 68 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC----------------CSEEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccc----------------ccccceeeEEEEecCcceeEEEEECCCchhhh
Confidence 46799999999999999999973221100000 01222222222333345679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|..+.........| ..+. ..++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~ 124 (174)
T d2bmea1 69 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 124 (174)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc
Confidence 9999999999999999999875443333222 2222 23789999999999754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.9e-16 Score=141.71 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++|+......... . + .|... ............+.+|||+|...|..
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~-----~-T----------~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~ 65 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYI-----P-T----------VEDTY-RQVISCDKSICTLQITDTTGSHQFPA 65 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCC-----C-C----------SCEEE-EEEEEETTEEEEEEEEECCSCSSCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccC-----c-c----------eeecc-ccceeeccccceeccccccccccccc
Confidence 579999999999999999998321100000 0 0 01111 11111222335678899999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHH-----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQAD-----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~-----~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|+++....... ..+..+. ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 122 (171)
T d2erxa1 66 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122 (171)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred cccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence 999999999999999999863332221 2222222 24689999999999754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1e-16 Score=149.77 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=80.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.+.+|+|+|..|+|||||+++|+......... ...|.+.......+......+++|||||+.+|
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~----------------~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~ 68 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI----------------STIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC----------------CSSCCCEEEEEEEETTEEEEEEEECCTTTTTT
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcC----------------CccceeEEEEEEEEeeEEEEEEEEECCCchhh
Confidence 45789999999999999999998321110000 01223333333334445678999999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHH---HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWRQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~---~~~~~p~ivviNK~D~~~ 221 (571)
...+..+++.+|++|+|+|.+......... .+..+ ...++|+++|.||+|+..
T Consensus 69 ~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 125 (194)
T d2bcgy1 69 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 125 (194)
T ss_dssp TCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc
Confidence 887888999999999999998654433333 22222 234679999999999764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.3e-16 Score=146.07 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=67.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEE-EeecCeEEEEEcCCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATT-TYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~-~~~~~~~i~liDTPG~~~ 167 (571)
++.+|+++|.+|+|||||+++|+.......... ..+.+....... .......+.+|||||+.+
T Consensus 1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 64 (175)
T d1ky3a_ 1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKA----------------TIGADFLTKEVTVDGDKVATMQVWDTAGQER 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-------------------CCCSCEEEEECCSSSCCEEEEEECCC----
T ss_pred CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCc----------------ccccceeeeeeeecCcccccceeeccCCchh
Confidence 367899999999999999999974221110000 001111111111 111346789999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh-------cCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK-------YGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-------~~~p~ivviNK~D~~~ 221 (571)
+.......++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~ 126 (175)
T d1ky3a_ 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126 (175)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhh
Confidence 988888899999999999999875443333333 22221 3789999999999864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.3e-16 Score=145.04 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
+.+|+++|.+|+|||||+++|+.... ... .....+.+.....+.+......+.+|||||+..|.
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~--~~~--------------~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~ 65 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKF--NPS--------------FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR 65 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC--CC---------------------CCEEEEEEESSSCEEEEEEECCTTGGGTS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC--CCc--------------cCCccceeEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 56899999999999999999973211 100 00111223333333344445778899999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH----HHHhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR----QADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~----~~~~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|..+.........|. .......|.+++.||.|+..
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~ 121 (166)
T d1g16a_ 66 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121 (166)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh
Confidence 88888999999999999998754433333322 12223567888999999754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=8.7e-17 Score=147.26 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=59.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
+...+|+++|++|+|||||+++|+.... . + ......|.+..............+++|||||+..
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~--~------------~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~ 67 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAF--N------------S--TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67 (173)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCC--C------------C--ccCccccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 4567899999999999999999972110 0 0 0111223333333333333346788999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
|.......++.+|++|+|+|+++.........| ..+ ...+.|+++|.||.|+..
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~ 125 (173)
T d2fu5c1 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 125 (173)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh
Confidence 988888889999999999999875433333222 222 245689999999999764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.66 E-value=9.9e-16 Score=139.44 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=75.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++++..... . ++.+ ..|.... ....+......+.+|||+|+.++.
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~--~-----------~~~~---T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~ 66 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFV--E-----------DYEP---TKADSYR-KKVVLDGEEVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--S-----------CCCT---TCCEEEE-EEEEETTEEEEEEEEECCC---CH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCC--c-----------ccCC---ccccccc-cccccccccccccccccccccchh
Confidence 568999999999999999999742211 0 0000 0121211 111222234678899999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|..+.........| ..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~ 123 (168)
T d1u8za_ 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred hhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc
Confidence 8889999999999999999875444443333 2222 24789999999999754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.1e-16 Score=140.57 Aligned_cols=115 Identities=17% Similarity=0.056 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++|+.......... + .+ ...............+.+||++|+..+.
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~------t----------~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 65 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP------T----------IE-DFYRKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT------T----------CC-EEEEEEEEETTEEEEEEEEECCCTTCCH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccCC------c----------ee-eeeeeeeecCcceEeeccccCCCccccc
Confidence 35799999999999999999984321110000 0 01 1111112222234678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|.++.........| ..+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 122 (167)
T d1kaoa_ 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred cchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh
Confidence 9999999999999999999865443333333 2222 24689999999999864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.1e-16 Score=143.83 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=78.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee--cCeEEEEEcCCCCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW--NKHRINIIDTPGHV 166 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~liDTPG~~ 166 (571)
...+|+++|.+|+|||||+++|+.... .... ..+.+.......+.. ....+.+|||||+.
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e 64 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEF--NLES----------------KSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC--CC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCC--CCcc----------------cccccceeeeEEEEECCEEEEEEecccCCcH
Confidence 356899999999999999999983211 1100 011122222223333 34688999999999
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
+|.......++.+|++|+|+|..+..... ....+..+.. .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~ 123 (175)
T d2f9la1 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 123 (175)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc
Confidence 99888889999999999999998643322 2233333333 4689999999999864
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=3.8e-16 Score=142.44 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=72.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
...+|+++|..|+|||||+++++......... . ...+.++.............++||||||+.+|
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 69 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-I--------------STVGIDFRNKVLDVDGVKVKLQMWDTAGQERF 69 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-C--------------CCCSCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccc-c--------------ceeeeeeEEEEEEecCcEEEEEEEECCCchhh
Confidence 35689999999999999999998322110000 0 00122333333333334468899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++++|+|..+.........| ... .....|+++|.||+|...
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~ 126 (170)
T d2g6ba1 70 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126 (170)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh
Confidence 88888899999999999999865443333322 222 234678899999999754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=9.8e-16 Score=139.77 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=73.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++....... +.+ ..+.. ......+......+.+|||+|+.++.
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~-------------~~~---t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~ 67 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTD-------------YDP---TIEDS-YTKQCVIDDRAARLDILDTAGQEEFG 67 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCSS-------------CCT---TCCEE-EEEEEEETTEEEEEEEEECC----CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-------------cCc---ccccc-eeeeeeeccccccccccccccccccc
Confidence 35799999999999999999984221100 000 01111 11111222234679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++++|+|..+.........| +.......|+++|.||+|+..
T Consensus 68 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~ 124 (171)
T d2erya1 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124 (171)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT
T ss_pred ccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh
Confidence 9999999999999999999864333322222 222234789999999999754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=8.6e-16 Score=139.96 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++........ ....|..+.............+.+|||+|+.++..
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~----------------~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~ 67 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK----------------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccc----------------cccccceeeccccccccccccccccccCCchhHHH
Confidence 57899999999999999999832211000 01123333333333333457899999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD---KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~---~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+.........|. ... ....|.++|.||+|+..
T Consensus 68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~ 122 (170)
T d1ek0a_ 68 LAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 122 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeeccccccc
Confidence 8899999999999999998754444333332 222 23678899999999854
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7e-16 Score=141.60 Aligned_cols=115 Identities=16% Similarity=0.029 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
++|+++|..|+|||||+++|+.......... + .+ ...............+.+|||+|+..|..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~------t----------~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 65 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVP------T----------VF-ENYVADIEVDGKQVELALWDTAGLEDYDR 65 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC------C----------SE-EEEEEEEEETTEEEEEEEEEECCSGGGTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCC------c----------ee-eeccccccccccceeeeccccCccchhcc
Confidence 5789999999999999999984321100000 0 01 11111122223456799999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVW-RQADK--YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~--~~~p~ivviNK~D~~~~ 222 (571)
....+++.+|++|+|+|.++....... ..| ..... .++|+++|.||+|+...
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 121 (177)
T d1kmqa_ 66 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121 (177)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTC
T ss_pred cchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccch
Confidence 888899999999999999874333221 122 22222 37899999999998654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.1e-17 Score=147.95 Aligned_cols=116 Identities=21% Similarity=0.168 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|+..... . ++ ....|+...............+.+|||||+..+..
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~--~-----------~~---~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 67 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFE--K-----------KY---VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-------C-----------CE---EEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--c-----------cc---ccceeccccccccccccccccccccccccccccce
Confidence 47999999999999999999632110 0 00 00112233222222223457899999999988877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH--hcCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETV-WRQAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~--~~~~p~ivviNK~D~~~~ 222 (571)
.....++.+|++++|+|+++........- +.... ..++|+++|.||+|+...
T Consensus 68 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 122 (170)
T d1i2ma_ 68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122 (170)
T ss_dssp CGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCS
T ss_pred ecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhh
Confidence 77888999999999999987544333222 22222 347999999999998643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.65 E-value=2.8e-15 Score=134.15 Aligned_cols=110 Identities=18% Similarity=0.068 Sum_probs=78.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+++|....-. .. +.+..............+.++|+||...+...
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 60 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIV--TT-------------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--CC-------------------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--cc-------------------ccceeeEEEEEeeeeEEEEEecCCCcccchhh
Confidence 6889999999999999999743211 00 01112223344567789999999999999999
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHHH----hcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETV-WRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
....++.+|++++++|..+......... +..+. ...+|++++.||.|+...
T Consensus 61 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~ 116 (160)
T d1r8sa_ 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (160)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccc
Confidence 9999999999999999986443333222 22222 236788999999998654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.6e-16 Score=142.89 Aligned_cols=117 Identities=18% Similarity=0.076 Sum_probs=75.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEe----------ecCeEEE
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTY----------WNKHRIN 158 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~----------~~~~~i~ 158 (571)
...+|+++|.+|+|||||+++|+........... .+.+......... .....+.
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~----------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 67 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT----------------VGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEE----------------EEEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCc----------------ccceeeEEEEEEecccccccccccceEEec
Confidence 3568999999999999999999722111000000 0111111111111 1235799
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH-H----hcCCCeEEEEecCCccc
Q 008294 159 IIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA-D----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 159 liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~-~----~~~~p~ivviNK~D~~~ 221 (571)
+|||||+.+|.......++.+|++|+|+|+++.........|... . ....|+++|.||+|+..
T Consensus 68 i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 135 (186)
T d2f7sa1 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 135 (186)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred cccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchh
Confidence 999999999999999999999999999999774433333333221 1 12467889999999854
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.8e-15 Score=137.24 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|.+|+|||||+++|+......... ...+.+.... .........+.+||++|+..+..
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~----------------~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~ 66 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD----------------PTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCCSCC----------------CCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccC----------------Cccceeeccc-eeeeceeeeeeeeeccCcccccc
Confidence 479999999999999999998422111000 0011111111 11112346789999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|..+.........| ..+. ..++|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (166)
T d1ctqa_ 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC
T ss_pred chhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc
Confidence 999999999999999999875433333333 2222 24689999999999754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.7e-16 Score=140.35 Aligned_cols=116 Identities=18% Similarity=0.105 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++|+......... ...+................+.+|||+|+.++.
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 66 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHI----------------TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 66 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCC----------------CCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccc----------------cccccchheeeeccCCccceeeeeccCCcceec
Confidence 3579999999999999999997322110000 001222223223333345789999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA---DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~---~~~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|.++.........| ... .....|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 122 (167)
T d1z08a1 67 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122 (167)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred ccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc
Confidence 8888889999999999999875544443333 222 235678889999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=8.5e-16 Score=142.19 Aligned_cols=120 Identities=15% Similarity=0.084 Sum_probs=79.1
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGH 165 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~ 165 (571)
|.....+|+++|..|+|||||+++|+.......... +..+ .. ..........+.+.+|||+|+
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~------Ti~~----------~~-~~~~~~~~~~~~l~i~D~~g~ 67 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVP------TVFD----------HY-AVSVTVGGKQYLLGLYDTAGQ 67 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCC------SSCC----------CE-EEEEESSSCEEEEEEECCCCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCC------ceee----------ee-eEEEeeCCceEEeeccccccc
Confidence 334567899999999999999999984321110000 0000 00 111111123467899999999
Q ss_pred CCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH-HHHH-HHH--hcCCCeEEEEecCCcccc
Q 008294 166 VDFTLEVERALRVLDGAICLFDSVAGVEPQSE-TVWR-QAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 166 ~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~-~~~--~~~~p~ivviNK~D~~~~ 222 (571)
..|.......++.+|++++|+|+++....... ..|. .++ ..++|+++|.||+|+...
T Consensus 68 e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 128 (185)
T d2atxa1 68 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128 (185)
T ss_dssp SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred chhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccc
Confidence 99988888899999999999999874433221 2222 222 347899999999998653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.63 E-value=2.4e-16 Score=151.85 Aligned_cols=133 Identities=23% Similarity=0.199 Sum_probs=82.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCccccc------chh------hhhhhceeEeeceE---------
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMD------WME------QEQERGITITSAAT--------- 148 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d------~~~------~e~~~g~t~~~~~~--------- 148 (571)
.|+|+|++|||||||+++|++..+.....+.+ ++++...+ ... ..............
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhhH
Confidence 58999999999999999999665444333322 22222111 100 00000000000000
Q ss_pred -------EEeecCeEEEEEcCCCCCCcHHHHHHHHHhc-----CeEEEEEeCCCCCchhHHHHHHHH-----HhcCCCeE
Q 008294 149 -------TTYWNKHRINIIDTPGHVDFTLEVERALRVL-----DGAICLFDSVAGVEPQSETVWRQA-----DKYGVPRI 211 (571)
Q Consensus 149 -------~~~~~~~~i~liDTPG~~~f~~~~~~~l~~~-----D~~ilVvda~~g~~~~~~~~~~~~-----~~~~~p~i 211 (571)
........+.++|||||.++...+......+ +.+++++|+..+..+++....... .+...|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 161 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI 161 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHhhccccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCce
Confidence 0001245799999999999876655554433 579999999999998887654432 34689999
Q ss_pred EEEecCCccccch
Q 008294 212 CFVNKMDRLGANF 224 (571)
Q Consensus 212 vviNK~D~~~~~~ 224 (571)
+|+||+|+..++.
T Consensus 162 vvinK~D~~~~~~ 174 (244)
T d1yrba1 162 PALNKVDLLSEEE 174 (244)
T ss_dssp EEECCGGGCCHHH
T ss_pred eeeeccccccHHH
Confidence 9999999987653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1e-15 Score=140.56 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|+......... ...+.+.......+......+.||||||+.++..
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 71 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELA----------------ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 71 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCC----------------CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccc----------------cceeecceeEEEEEeccccEEEEEECCCchhhHH
Confidence 469999999999999999997321100000 0012222233333333457799999999999888
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|.++....... ..+..+.+ ...|++++.||.|...
T Consensus 72 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~ 127 (177)
T d1x3sa1 72 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127 (177)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc
Confidence 888899999999999998864333222 23333332 3577889999999643
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3e-15 Score=135.96 Aligned_cols=116 Identities=16% Similarity=0.038 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++++........... .+... ............+.+||++|+..+.
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t----------------~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~ 65 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----------------IEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC----------------SEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCc----------------ccccc-ceeEEeeeeEEEeccccccCccccc
Confidence 357999999999999999999843211100000 01111 1111222355789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
......++.+|++|+|+|..+.........| ..+. ..++|+++|.||+|+...
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~ 123 (167)
T d1c1ya_ 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred ccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccc
Confidence 9999999999999999999875444333322 2222 246899999999998643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6.7e-16 Score=140.27 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=77.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+.++|+++|..|+|||||+++|+......... .+ .+... .....+....+.+.+|||+|..+|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~-----~t-----------~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~ 65 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD-----PT-----------IENTF-TKLITVNGQEYHLQLVDTAGQDEY 65 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-----SS-----------CCEEE-EEEEEETTEEEEEEEEECCCCCTT
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccC-----cc-----------eeccc-ceEEecCcEEEEeeeccccccccc
Confidence 45789999999999999999997422110000 00 01111 111222223467889999999998
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HH----HhcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QA----DKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~----~~~~~p~ivviNK~D~~~ 221 (571)
.......++.+|++|+|+|..+.........|. .+ ...++|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 123 (167)
T d1xtqa1 66 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123 (167)
T ss_dssp CCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG
T ss_pred ccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc
Confidence 777777889999999999998765544443332 22 235789999999999754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-15 Score=139.08 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=77.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|+|||||+++++........ ....+.+..............+.+||++|+..+.
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 66 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 66 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEETTEEEEEEEECCTTGGGTS
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCc----------------ccceeeccceeeeeeeeeEEEEEeecccCccchh
Confidence 357999999999999999999843211000 0001122222222222244688999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhH-HHHHHHHHh---cCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQS-ETVWRQADK---YGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~ 221 (571)
......++.+|++|+|+|..+...... ...|..+.. .++|+++|.||+|+..
T Consensus 67 ~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 122 (173)
T d2a5ja1 67 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 122 (173)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh
Confidence 888999999999999999986433222 223333333 4789999999999754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.7e-15 Score=134.35 Aligned_cols=115 Identities=21% Similarity=0.205 Sum_probs=76.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.-+|+|+|++|||||||+|+|+ |.......... +.+..........+...+.++|+||.....
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~---~~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLL---GQKISITSRKA--------------QTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH---TCSEEECCCCS--------------SCCSSCEEEEEEETTEEEEEESSSSCCHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh---CCCceeeccCC--------------CceEEEEEeeeecCCceeEeecCCCceecc
Confidence 4579999999999999999996 33222222111 112222223344467788889999986643
Q ss_pred HHHHHHH---------HhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVERAL---------RVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l---------~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
....... ..+|++++++|+.. ...+....+..+.+...|.++|+||+|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~ 128 (179)
T d1egaa1 68 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE 128 (179)
T ss_dssp HHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC
T ss_pred hhhhhhhhhhccccchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccch
Confidence 3322222 23577888888764 5566666777778888999999999997653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.62 E-value=7.5e-15 Score=134.07 Aligned_cols=113 Identities=19% Similarity=0.084 Sum_probs=76.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|.+|+|||||+++|.... .. ... .+.......+...+..+.++|++|+...
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~--~~-~~~------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 72 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNE--VV-HTS------------------PTIGSNVEEIVINNTRFLMWDIGGQESL 72 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS--CE-EEE------------------CCSCSSCEEEEETTEEEEEEECCC----
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCC--CC-ccc------------------cccceeEEEEeecceEEEEecccccccc
Confidence 34689999999999999999997211 11 100 0112223344557789999999999988
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHH-HHHH----HhcCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETV-WRQA----DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~~~----~~~~~p~ivviNK~D~~~~ 222 (571)
.......+..++++++|+|.++......... +... ...+.|+++|+||+|+..+
T Consensus 73 ~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (177)
T d1zj6a1 73 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131 (177)
T ss_dssp CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred ccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc
Confidence 8888888999999999999986544333222 1222 2347899999999998654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=3.1e-15 Score=136.19 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++++......... ...+... .....+......+.+|||+|+.++.
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~----------------~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~ 66 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYD----------------PTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFS 66 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCC----------------TTCCEEE-EEEEEETTEEEEEEEEECCSCGGGC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccC----------------cceeecc-ccccccccccccccccccccccccc
Confidence 3578999999999999999998422110000 0001111 1112222345778899999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-----RQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-----~~~~~~~~p~ivviNK~D~~~~ 222 (571)
......++.+|++++|+|.++.........| +.....++|+++|.||+|+...
T Consensus 67 ~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~ 124 (169)
T d1x1ra1 67 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124 (169)
T ss_dssp SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred cchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhh
Confidence 8888999999999999999874433322222 2223357899999999998643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.8e-15 Score=136.21 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=78.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
.+.+|+++|.+|+|||||+++|+......... ...+.+..............+.+|||+|..++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~ 68 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF----------------HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEETTEEEEEEEEECCCCGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccc----------------cceeeeeeeeeeeecCceeeEeeecccCccee
Confidence 36789999999999999999998422110000 01122322222222223467889999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH-------hcCCCeEEEEecCCccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD-------KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~-------~~~~p~ivviNK~D~~~ 221 (571)
.......+..+|++++++|.++.........|. .+. ..++|+++|.||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~ 129 (174)
T d1wmsa_ 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 129 (174)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred hhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh
Confidence 888899999999999999998644333222221 121 13689999999999743
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=5.3e-16 Score=143.35 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=78.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
+.+|+++|.+|+|||||+++|+.... .. ++ ....|.+..............+.+|||||+.++.
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f--~~-----------~~---~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 65 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKF--SN-----------QY---KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ 65 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC--CS-----------SC---CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC--CC-----------Cc---CCccceeeeeeeeeeCCceEEEEeeecCCccccc
Confidence 35799999999999999999973221 10 00 0012333333333333455788999999998887
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH-------hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD-------KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~-------~~~~p~ivviNK~D~~~ 221 (571)
......+..+|++++|+|..+.........|. .+. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~ 125 (184)
T d1vg8a_ 66 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 125 (184)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred ccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence 77888899999999999997643333222221 121 23689999999999754
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.6e-15 Score=137.29 Aligned_cols=115 Identities=11% Similarity=0.001 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++.......... + .+ ...............+.+|||+|+.+|..
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~------t----------~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 66 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP------T----------VF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDR 66 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC------C----------SE-EEEEEEEEETTEEEEEEEEEECCSGGGTT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCCcCC------c----------ee-eecceeEeeCCceeeeeccccccchhhhh
Confidence 5799999999999999999984221100000 0 01 01111111222346789999999999988
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHH-HHHH-HH--hcCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSET-VWRQ-AD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~-~~--~~~~p~ivviNK~D~~~~ 222 (571)
....+++.+|++++|+|.++....+... .|.. .. ..++|+++|.||+|+...
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~ 122 (191)
T d2ngra_ 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122 (191)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC
T ss_pred hhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccccc
Confidence 8888999999999999998754333332 2222 22 247899999999998654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.6e-15 Score=137.59 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=78.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+|+++|..|+|||||+++|+.......... +. +.. .............+.+||++|+..|
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~------ti----------~~~-~~~~~~~~~~~~~~~~~d~~g~~~~ 66 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP------TV----------FDN-YSANVMVDGKPVNLGLWDTAGQEDY 66 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC------CS----------CCE-EEEEEEETTEEEEEEEECCCCSGGG
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCCccccc------ce----------eec-eeeeeeccCcceEEEeecccccccc
Confidence 346899999999999999999984321111000 00 101 1111222334567899999999999
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCchhHHH-HHH-HHH--hcCCCeEEEEecCCcccc
Q 008294 169 TLEVERALRVLDGAICLFDSVAGVEPQSET-VWR-QAD--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 169 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~-~~~--~~~~p~ivviNK~D~~~~ 222 (571)
......+++.+|++++|+|+++....+... .|. ..+ ..++|+++|.||+|+...
T Consensus 67 ~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 124 (183)
T d1mh1a_ 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (183)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred hhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhh
Confidence 888888999999999999998754433322 122 222 236899999999998643
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1e-14 Score=132.55 Aligned_cols=113 Identities=19% Similarity=0.097 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++++....... +.+ ..|...... .........+.+|||+|...+.
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~~~-------------~~p---Ti~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~- 64 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFIWE-------------YDP---TLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI- 64 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC-------------CCT---TCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCc-------------cCC---ceecccccc-ccccccceEEEEeecccccccc-
Confidence 4689999999999999999984321100 000 012221111 1112234678999999998874
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-H----HHhcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSETVWR-Q----ADKYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~----~~~~~~p~ivviNK~D~~~ 221 (571)
.....++.+|++++|+|.++.........|. . ....+.|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 120 (168)
T d2atva1 65 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhh
Confidence 5667889999999999998754433332221 1 1224789999999999854
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.3e-14 Score=130.05 Aligned_cols=110 Identities=17% Similarity=0.130 Sum_probs=79.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTLE 171 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~~ 171 (571)
+|+++|.+|+|||||+|+|.... .... +.|...........+..+.++|++|+..+...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~--~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR--LATL-------------------QPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 60 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--CCCC-------------------CCCCSCEEEEECCTTCCEEEEECCCSGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCee-------------------eceeeEeEEEeccCCeeEEEEeeccchhhhhh
Confidence 68999999999999999997321 1110 11333334455567889999999999998888
Q ss_pred HHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCcccc
Q 008294 172 VERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 172 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~~ 222 (571)
....+..++++++++|..+.........+ ... ...+.|++++.||.|+...
T Consensus 61 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~ 116 (166)
T d2qtvb1 61 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116 (166)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred HhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc
Confidence 88888999999999999875544433322 222 2247889999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.56 E-value=3.4e-14 Score=127.90 Aligned_cols=112 Identities=20% Similarity=0.045 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|.+|||||||+++|+..... . ...|.......+..++..+.++|++|+..+.
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVV--T-------------------TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--C-------------------CCCCSSEEEEEEEETTEEEEEEEECCCGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--c-------------------eecccceeeeeeccCceEEEEeecccccccc
Confidence 467999999999999999999732111 0 0113333344556688999999999999988
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVW-RQA----DKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~----~~~~~p~ivviNK~D~~~~ 222 (571)
......+...+++++++|............+ ... .....|++++.||.|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~ 121 (169)
T d1upta_ 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 121 (169)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccc
Confidence 8888888899999999999865554443322 222 2236788899999998654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.2e-15 Score=134.17 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=69.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC---CC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG---HV 166 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG---~~ 166 (571)
..+|+++|..|+|||||+++|........... ...|+........+......+.+||+|| +.
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~---------------~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e 67 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC---------------EVLGEDTYERTLMVDGESATIILLDMWENKGEN 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC------------------CCTTEEEEEEEETTEEEEEEEECCTTTTHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccc---------------cceeeecceeeeccCCceeeeeeeccccccccc
Confidence 46899999999999999999972111100000 0011112222222333445678888765 44
Q ss_pred CcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCCeEEEEecCCccc
Q 008294 167 DFTLEVERALRVLDGAICLFDSVAGVEPQSETVW-RQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 167 ~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~ 221 (571)
+| ....+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 125 (172)
T d2g3ya1 68 EW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 125 (172)
T ss_dssp HH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred cc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc
Confidence 44 233457889999999999874443333333 22332 3789999999999864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=3.7e-14 Score=130.20 Aligned_cols=123 Identities=13% Similarity=0.128 Sum_probs=74.3
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcC
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDT 162 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDT 162 (571)
+..|.++.++|+++|++|||||||+|+|+ +........ ..+.+...........+......++
T Consensus 9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~---~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (188)
T d1puia_ 9 RHLPSDTGIEVAFAGRSNAGKSSALNTLT---NQKSLARTS--------------KTPGRTQLINLFEVADGKRLVDLPG 71 (188)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTC---CC---------------------------CCEEEEEEETTEEEEECCC
T ss_pred hHCCCccCCEEEEECCCCCCHHHHHHHHh---CCCceEeec--------------ccccceeeccceecccccceeeeec
Confidence 33566678999999999999999999995 221111100 0112222222233334445555555
Q ss_pred CCCCCc-----------HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 163 PGHVDF-----------TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 163 PG~~~f-----------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
++.... ..........++.++.+.|+..+...+....+........+.++++||+|+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~ 142 (188)
T d1puia_ 72 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 142 (188)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCH
Confidence 543221 111112223446677778888888888888888989999999999999998653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=2.3e-14 Score=129.46 Aligned_cols=117 Identities=20% Similarity=0.193 Sum_probs=77.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
++.+|+++|..|+|||||+++|+......... ...+................+.+||++|...+
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE----------------ATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC----------------CCCSCCEEEEEEEETTEEEEEEEEECCCSHHH
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccC----------------cccccccceeeeeeeccceEEEEEeccCchhh
Confidence 45789999999999999999998432111000 01122333333334445678999999998776
Q ss_pred HHH-HHHHHHhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCCeEEEEecCCccc
Q 008294 169 TLE-VERALRVLDGAICLFDSVAGVEPQSET-VWRQADK----YGVPRICFVNKMDRLG 221 (571)
Q Consensus 169 ~~~-~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 221 (571)
... ....++.+|++|+|+|.++........ .+..+.+ .++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~ 123 (165)
T d1z06a1 65 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123 (165)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred ccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh
Confidence 443 456789999999999998754333322 2333322 4789999999999854
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=8.1e-15 Score=137.60 Aligned_cols=112 Identities=16% Similarity=0.251 Sum_probs=79.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
.++|+|+|++|||||||+|+|+.... . .++|.......+.+++..+.+|||||+..+.
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~---~-------------------~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~ 60 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSV---R-------------------PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSC---C-------------------CBCCCSSCEEETTGGGSSCEEEECCCCGGGT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---C-------------------CeEEecceEEEEEeCCeEEEEEecccccchh
Confidence 36899999999999999999973211 0 1234444445556678889999999998764
Q ss_pred HHH----HHHHHhcCeEEEEEeCCCCCch---------hHHHHHHHHHhcCCCeEEEEecCCccccc
Q 008294 170 LEV----ERALRVLDGAICLFDSVAGVEP---------QSETVWRQADKYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 170 ~~~----~~~l~~~D~~ilVvda~~g~~~---------~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 223 (571)
... ..+...+|.+++++|+...... +....++.+...++|+++|+||+|+....
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 61 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred hHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 444 4445566999999999865432 12233344556789999999999997754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.4e-13 Score=125.78 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++++........ .+ .+.+. .....+......+.+|||+|+.++
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-------~t----------~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~- 65 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-------KT----------ESEQY-KKEMLVDGQTHLVLIREEAGAPDA- 65 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCC-------CS----------SCEEE-EEEEEETTEEEEEEEEECSSCCCH-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcC-------Cc----------cceeE-EEEeecCceEEEEEEeeccccccc-
Confidence 478999999999999999999843211000 00 01111 111222234477899999999875
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHH-HHH------hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWR-QAD------KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~------~~~~p~ivviNK~D~~~ 221 (571)
..++.+|++|+|+|.++.-..+....|. .+. ..++|+++|+||.|+..
T Consensus 66 ----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~ 120 (175)
T d2bmja1 66 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120 (175)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred ----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcch
Confidence 3688999999999998754444433332 221 24568999999988643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=4.3e-14 Score=129.81 Aligned_cols=115 Identities=13% Similarity=0.016 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
-+|+++|..|+|||||+++++.......... +. + .............+.+.+|||+|+..+..
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~------t~----------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 65 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP------TV----------F-ENYTASFEIDTQRIELSLWDTSGSPYYDN 65 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCC------CS----------E-EEEEEEEECSSCEEEEEEEEECCSGGGTT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCC------ce----------e-ecccccccccceEEeeccccccccccccc
Confidence 3689999999999999999984321100000 00 0 11111122223457789999999999877
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCchhHH-HHHHHH-H--hcCCCeEEEEecCCcccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEPQSE-TVWRQA-D--KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~--~~~~p~ivviNK~D~~~~ 222 (571)
.....++.+|++|+|+|.++....+.. ..|... . ..++|+++|.||+|+...
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (179)
T d1m7ba_ 66 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121 (179)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred cccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEeccccccc
Confidence 777889999999999999875443332 223322 2 247899999999997543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.48 E-value=1.2e-13 Score=126.33 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=75.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
++..+|+++|.+|||||||+++|. +..... ...+.......+.+++..++++|++|+..
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~---~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLK---DDRLGQ------------------HVPTLHPTSEELTIAGMTFTTFDLGGHIQ 69 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS---CC------------------------CCCCCSCEEEEETTEEEEEEEECC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh---CCCCcc------------------eecccccceeEEEecccccccccccchhh
Confidence 335679999999999999999995 211100 00122233334556788999999999999
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQ-SETVWRQAD----KYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~----~~~~p~ivviNK~D~~~~ 222 (571)
+........+..+++++++|..+..... ....+.... ..++|++++.||.|+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~ 129 (186)
T d1f6ba_ 70 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129 (186)
T ss_dssp -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred hhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc
Confidence 8877788889999999999987643322 222222222 247899999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=3.7e-13 Score=126.19 Aligned_cols=114 Identities=24% Similarity=0.227 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEE-eecCeEEEEEcCCCCCCcH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTT-YWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~-~~~~~~i~liDTPG~~~f~ 169 (571)
|+|+|+|++|+|||||+++|+........ .+++.......+ ...+..+.+|||||+..+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 61 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-------------------TSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBC-------------------CCCSCEEEEEECSSTTCCEEEEEECCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccc-------------------CCeeEEEEEEEEeeeeeeeeeeeecccccccc
Confidence 58999999999999999999842211100 011111111222 2256789999999999886
Q ss_pred HH-HHHHHHhcCeEEEEEeCCCCCch---hHHHHHHHHH-----hcCCCeEEEEecCCccccc
Q 008294 170 LE-VERALRVLDGAICLFDSVAGVEP---QSETVWRQAD-----KYGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 170 ~~-~~~~l~~~D~~ilVvda~~g~~~---~~~~~~~~~~-----~~~~p~ivviNK~D~~~~~ 223 (571)
.. +...+..+|++++|+|+.+.... ..+.+...+. ..++|++||+||+|++.+.
T Consensus 62 ~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp HHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred chhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 44 45566889999999999864322 1111212221 2457889999999998754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=2.6e-12 Score=132.58 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=74.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+|+|.+|+|||||+|+|+...... .+....| . .++|....... ..+...+.||||||.....
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~--~~~~~~g-----~------~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~ 121 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTG-----V------VEVTMERHPYK-HPNIPNVVFWDLPGIGSTN 121 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCC-----C----------CCCEEEE-CSSCTTEEEEECCCGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCC--CccCCCC-----C------CCCceeeeeee-ccCCCeEEEEeCCCccccc
Confidence 5799999999999999999997211100 0000000 0 11233322222 2345569999999976531
Q ss_pred --HH---HHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 170 --LE---VERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 170 --~~---~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
.+ ....+..+|.+++++|. .+..++..++..+...++|+++|+||+|+.
T Consensus 122 ~~~~~~~~~~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 122 FPPDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRTKVDSD 175 (400)
T ss_dssp CCHHHHHHHTTGGGCSEEEEEESS--CCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ccHHHHHHHhhhhcceEEEEecCC--CCCHHHHHHHHHHHHcCCCEEEEEeCcccc
Confidence 11 12235567887777764 678888999999999999999999999964
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=1.7e-12 Score=120.58 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=74.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++|...... .-|+......+.++...+.+|||+|+..+.
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~~~~-----------------------~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~ 58 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRIIHGQ-----------------------DPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHSC-----------------------CCCSSEEEEEEEETTEEEEEEEECC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCeeeeEEEEEeeeeeeeeeecccceeeec
Confidence 468999999999999999999421110 113444455677889999999999999998
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCch--------hH---HHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEP--------QS---ETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~--------~~---~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
..+....+.++++++++|..+.... .. ...|..+. ..++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 125 (200)
T d1zcba2 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 125 (200)
T ss_dssp --CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred ccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence 8888999999999999999865421 11 12222221 34899999999999764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=3.8e-12 Score=117.27 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFTL 170 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~~ 170 (571)
.+|+++|..|+|||||+++|...... |.......+......+.+|||.|+..|..
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~~-------------------------t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~ 57 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHEA-------------------------GTGIVETHFTFKDLHFKMFDVGGQRSERK 57 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSC-------------------------CCSEEEEEEEETTEEEEEEEECCSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-------------------------CccEEEEEEEeeeeeeeeecccccccccc
Confidence 57899999999999999999632110 11222345667889999999999999999
Q ss_pred HHHHHHHhcCeEEEEEeCCCCCch-----------hHHHHHHHHH----hcCCCeEEEEecCCccc
Q 008294 171 EVERALRVLDGAICLFDSVAGVEP-----------QSETVWRQAD----KYGVPRICFVNKMDRLG 221 (571)
Q Consensus 171 ~~~~~l~~~D~~ilVvda~~g~~~-----------~~~~~~~~~~----~~~~p~ivviNK~D~~~ 221 (571)
.+..+++.++++++|+|.++.... .....|..+. ..+.|+++++||+|+..
T Consensus 58 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~ 123 (195)
T d1svsa1 58 KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 123 (195)
T ss_dssp GGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred chhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhh
Confidence 999999999999999998743211 1122333332 34689999999999754
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=4.5e-12 Score=117.27 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=83.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
-.+|+++|..|+|||||+++|...... . -.|+......+......+.+|||+|+..+.
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~--------------------~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~ 59 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGS--G--------------------VPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSS--C--------------------CCCCSCEEEEEECSSCEEEEEECCCSTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC--C--------------------CceeeEEEEEEeccceeeeecccccccccc
Confidence 357999999999999999999743221 0 013434445666788999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCc-----------hhHHHHHHHHHh----cCCCeEEEEecCCcccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVE-----------PQSETVWRQADK----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~-----------~~~~~~~~~~~~----~~~p~ivviNK~D~~~~ 222 (571)
..+...++.++++++++|..+... ......|..+.. .+.|++++.||.|+...
T Consensus 60 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~ 127 (200)
T d2bcjq2 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE 127 (200)
T ss_dssp GGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHH
T ss_pred ccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhh
Confidence 999999999999999999975321 123344544432 47899999999998654
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=1.2e-11 Score=99.94 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=78.0
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~-- 462 (571)
|.||++.|..+|..++.|+++.|||.+|++++||.|...+.+...+|++|...+ +++++|.|||.+++ .+++
T Consensus 1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~l~l~~i~~~ 76 (94)
T d1f60a1 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHH----EQLEQGVPGDNVGFNVKNVSVK 76 (94)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETT----EECSCBCTTCEEEEEESSCCTT
T ss_pred CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcCCceEEEEEEEEcC----cCcCEecCCCeEEEEEeCccHH
Confidence 479999999999999999999999999999999999999999999999997554 78999999999998 5655
Q ss_pred CccccceecCCCCcc
Q 008294 463 DTITGETLCDADHPI 477 (571)
Q Consensus 463 ~~~~Gdtl~~~~~~~ 477 (571)
++..|++||+++++.
T Consensus 77 ~i~rG~vl~~~~~~p 91 (94)
T d1f60a1 77 EIRRGNVCGDAKNDP 91 (94)
T ss_dssp TSCTTCEEEETTSSC
T ss_pred hcCCCCEEECCCCCC
Confidence 688999999887654
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.16 E-value=5.3e-11 Score=96.50 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=78.2
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC--
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK-- 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~-- 462 (571)
++||++.|..+|..++.|++..|||.+|+++.||.|...+.+...+|++|.... .++++|.|||.+++ .|++
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~----~~~~~a~aG~~v~l~l~~i~~~ 78 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHH----TKMDKAEPGDNIGFNVRGVEKK 78 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETT----EEESEECTTCEEEEEEESSCGG
T ss_pred CcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeCCceEEEEEEEecC----CccCEEeCCCcEEEEEEcCcHH
Confidence 589999999999999999999999999999999999999999999999987664 78999999999977 6665
Q ss_pred CccccceecCCCCcc
Q 008294 463 DTITGETLCDADHPI 477 (571)
Q Consensus 463 ~~~~Gdtl~~~~~~~ 477 (571)
++..|++||++++++
T Consensus 79 ~i~rG~vl~~~~~~p 93 (95)
T d1jnya1 79 DIKRGDVVGHPNNPP 93 (95)
T ss_dssp GCCTTCEEECTTSCC
T ss_pred hcCCCCEEECCCccC
Confidence 488999999988764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.16 E-value=2.1e-10 Score=110.90 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=79.2
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVD 167 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~ 167 (571)
....+|+++|.+|+|||||+|+|+ |......+. ..+.|.........+++..+++|||||..+
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~il---g~~~~~vs~--------------~~~~T~~~~~~~~~~~g~~i~viDTPGl~~ 92 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSII---GERVVSISP--------------FQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH---TSCCSCCCS--------------SSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred CCCcEEEEECCCCCcHHHHHHHHh---CCCceeecC--------------CCCcceeEEEEEEEeccEEEEEEeeecccC
Confidence 456899999999999999999997 322111111 124565566666778899999999999754
Q ss_pred c-------HHHHHHHH--HhcCeEEEEEeCCCC-CchhHHHHHHHHHh-----cCCCeEEEEecCCcccc
Q 008294 168 F-------TLEVERAL--RVLDGAICLFDSVAG-VEPQSETVWRQADK-----YGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f-------~~~~~~~l--~~~D~~ilVvda~~g-~~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~~ 222 (571)
. ...+.... ...|++++|++.... +.......++.+.. ...++++|+||+|....
T Consensus 93 ~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 93 GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp TTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 2 11222222 234888899888653 56666666555543 23578999999998653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=5.4e-11 Score=118.75 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=69.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCccc------ccchh---hhhhhceeEeeceEE--E---
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT------MDWME---QEQERGITITSAATT--T--- 150 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~------~d~~~---~e~~~g~t~~~~~~~--~--- 150 (571)
.+...|+|+|.+|+|||||+++|... .|.....-.+++.+.. -|... .....++.+...... +
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 46789999999999999999999732 2332222222222211 11100 011122222221111 1
Q ss_pred -----------eecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHH--HHHHHHHhcCCCeEEEEecC
Q 008294 151 -----------YWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSE--TVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 151 -----------~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~~~p~ivviNK~ 217 (571)
+..++.+.||.|-|...- + ......+|.+++|+++..|-.-|.. -+++ ++-++|+||+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~--e-~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e------~aDi~VvNKa 202 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQS--E-TEVARMVDCFISLQIAGGGDDLQGIKKGLME------VADLIVINKD 202 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH--H-HHHHTTCSEEEEEECC------CCCCHHHHH------HCSEEEECCC
T ss_pred hhhhhHHHHHHHhcCCCeEEEeecccccc--c-hhhhhccceEEEEecCCCchhhhhhchhhhc------cccEEEEEee
Confidence 013678999999997652 2 3466778999999988766544332 2222 4569999999
Q ss_pred Cccccc
Q 008294 218 DRLGAN 223 (571)
Q Consensus 218 D~~~~~ 223 (571)
|+..++
T Consensus 203 D~~~~~ 208 (327)
T d2p67a1 203 DGDNHT 208 (327)
T ss_dssp CTTCHH
T ss_pred cccchH
Confidence 987654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.12 E-value=1e-10 Score=110.62 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..+|+++|..|+|||||+++|...... .|+......+.+++..+.+||+.|+..+.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~------------------------pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r 61 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV------------------------LTSGIFETKFQVDKVNFHMFDVGGQRDER 61 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC------------------------CCCSCEEEEEEETTEEEEEEECCCSTTTT
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC------------------------CCCCeEEEEEEECcEEEEEEecCccceec
Confidence 468999999999999999999622110 13333344566789999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCC--------ch---hHHHHHHHHHh----cCCCeEEEEecCCccccc
Q 008294 170 LEVERALRVLDGAICLFDSVAGV--------EP---QSETVWRQADK----YGVPRICFVNKMDRLGAN 223 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~--------~~---~~~~~~~~~~~----~~~p~ivviNK~D~~~~~ 223 (571)
..+...+..++++++|+|.++.. .. .....|..+.. .++|+++++||+|+....
T Consensus 62 ~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k 130 (221)
T d1azta2 62 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK 130 (221)
T ss_dssp TGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred cchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhh
Confidence 88999999999999999987421 11 12223333222 478999999999987543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.09 E-value=4.6e-10 Score=111.71 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=70.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh---cCCcceeeeeecCccc------ccchh---hhhhhceeEeeceEE------
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY---TGRNYKIGEVHEGTAT------MDWME---QEQERGITITSAATT------ 149 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~---~g~~~~~g~~~~g~~~------~d~~~---~e~~~g~t~~~~~~~------ 149 (571)
.+...|+|.|.+|+|||||+++|+.. .|.....-.+++.+.. -|... .....++-+......
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 45789999999999999999999843 2333222222222211 11111 011111111111100
Q ss_pred ----------EeecCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 150 ----------TYWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 150 ----------~~~~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
++..++.+.||.|.|...-.. .....+|..++|+.+..|..-|.... -.+.++-++|+||+|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~----gilE~aDi~vvNKaD~ 201 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK----GIFELADMIAVNKADD 201 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT----THHHHCSEEEEECCST
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhh----hHhhhhheeeEecccc
Confidence 011468899999999765322 23455899999999987755443211 0112456999999998
Q ss_pred ccc
Q 008294 220 LGA 222 (571)
Q Consensus 220 ~~~ 222 (571)
.+.
T Consensus 202 ~~~ 204 (323)
T d2qm8a1 202 GDG 204 (323)
T ss_dssp TCC
T ss_pred ccc
Confidence 764
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.07 E-value=1.3e-10 Score=94.12 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=74.0
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe--CC-C
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GL-K 462 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl-~ 462 (571)
.++||++.|..+|. +.|+++.|||.+|+++.||+|...+.+...+|+.|+.++. .++++|.|||.+++. |. +
T Consensus 6 ~~~PlR~pV~d~~k--g~G~vv~G~v~sG~i~~gd~v~i~P~~~~~~Vk~I~~~~~---~~v~~a~aGd~V~l~l~~~~~ 80 (95)
T d1r5ba1 6 VNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEAD---EEISSSICGDQVRLRVRGDDS 80 (95)
T ss_dssp HTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTC---CEESEEETTCEEEEEEESCCT
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEeeCeEeCCCEEEEecCCCEEEEEEEEEEcc---ccccCcCCCCEEEEEEcCccc
Confidence 36899999999985 5699999999999999999999999999999999876543 569999999999994 43 3
Q ss_pred CccccceecCCCCc
Q 008294 463 DTITGETLCDADHP 476 (571)
Q Consensus 463 ~~~~Gdtl~~~~~~ 476 (571)
++..|++||++++|
T Consensus 81 di~rG~vl~~~~~P 94 (95)
T d1r5ba1 81 DVQTGYVLTSTKNP 94 (95)
T ss_dssp TCCTTCEEECSSSC
T ss_pred ccCCCCEEEcCCCC
Confidence 58899999998765
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.8e-10 Score=91.22 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=70.8
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCC--ceeecceEEEeccCceeecCeecCCCEEEE--eCCC
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKG--KKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK 462 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~ 462 (571)
+.||+++|..+|..++.|+++.|+|.+|++++||.|...+.+ .+.+|+.|...+ ++++.|.|||.+++ .|++
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~~~~~vksi~~~~----~~~~~a~aG~~v~l~L~gi~ 78 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFR----KLLDEGRAGENVGVLLRGIK 78 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEETT----EEESEEETTCEEEEEETTCC
T ss_pred CCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcCCCCcEEEEEEEEECC----cCccccCCCCEEEEEEcCCC
Confidence 579999999999999999999999999999999999875443 445677776554 88999999999998 5665
Q ss_pred --CccccceecCCC
Q 008294 463 --DTITGETLCDAD 474 (571)
Q Consensus 463 --~~~~Gdtl~~~~ 474 (571)
++..|++||.++
T Consensus 79 ~~~i~rG~vl~~pG 92 (92)
T d1efca1 79 REEIERGQVLAKPG 92 (92)
T ss_dssp GGGCCTTCEEECTT
T ss_pred HHHcCCccEEeCCC
Confidence 488999999763
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=99.04 E-value=3.7e-10 Score=92.20 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=74.1
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeC---CCCceeecceEEEeccCceeecCeecCCCEEEE--eC
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNA---NKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AG 460 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~---~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~g 460 (571)
.++||++.|..+|..++.|++..|+|.+|+++.||.+... +.+...+|++|...+ .++++|.|||.++| .|
T Consensus 5 ~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~~~----~~~~~a~aG~~v~l~l~g 80 (100)
T d2c78a1 5 VDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRG 80 (100)
T ss_dssp CSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETT----EEESEEETTCEEEEEESS
T ss_pred CCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEeecCCCcEEEEEEEEECC----ccccEEeCCCeEEEEEcC
Confidence 4789999999999999999999999999999999999975 555667788886443 78999999999998 55
Q ss_pred CC--CccccceecCCCCc
Q 008294 461 LK--DTITGETLCDADHP 476 (571)
Q Consensus 461 l~--~~~~Gdtl~~~~~~ 476 (571)
++ ++..|++||+++..
T Consensus 81 i~~~~i~rG~vl~~p~~l 98 (100)
T d2c78a1 81 VSREEVERGQVLAKPGSI 98 (100)
T ss_dssp CCTTTCCTTCEEESTTSS
T ss_pred CCHHHccCcCEEECCCCC
Confidence 55 47899999987654
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.03 E-value=3.7e-10 Score=91.84 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEe--CCCCceeecceEEEeccCceeecCeecCCCEEEE--eCC
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLN--ANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL 461 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~--~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl 461 (571)
.++||++.|...|..+++|+++.|+|.+|+++.||.|.. .+.+...+|..|...+ +++++|.|||.+++ .|+
T Consensus 4 ~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~~~~V~si~~~~----~~~~~a~aG~~v~l~l~gi 79 (98)
T d1d2ea1 4 LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGL 79 (98)
T ss_dssp TTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETT----EEESEEETTCEEEEEESSC
T ss_pred CCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccCCCCeeEEEEEEEEec----cEeccCCCCCEEEEEEcCC
Confidence 479999999999999999999999999999999999954 3333344566665443 88999999999998 566
Q ss_pred C--CccccceecCCCC
Q 008294 462 K--DTITGETLCDADH 475 (571)
Q Consensus 462 ~--~~~~Gdtl~~~~~ 475 (571)
+ ++..|++||+++.
T Consensus 80 ~~~~i~rG~vl~~p~~ 95 (98)
T d1d2ea1 80 KREDLRRGLVMAKPGS 95 (98)
T ss_dssp CGGGCCTTCEEESTTS
T ss_pred CHHHccCccEEeCCCC
Confidence 5 4889999998754
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.96 E-value=4.2e-11 Score=96.37 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC-
Q 008294 386 DDEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK- 462 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 462 (571)
.++||++.|..+|..+++|+++.|+|.+|++++||.|+..+.+...+|++|... .+++++|.|||.++| .|++
T Consensus 3 ~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aGd~v~l~L~gi~~ 78 (92)
T d1wb1a1 3 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDA 78 (92)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCS
T ss_pred CCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEeccCCceEEEeeeEc----CceeeEeCCCCEEEEEEcCCCH
Confidence 478999999999999999999999999999999999999999988899988643 378999999999988 5554
Q ss_pred -CccccceecCCC
Q 008294 463 -DTITGETLCDAD 474 (571)
Q Consensus 463 -~~~~Gdtl~~~~ 474 (571)
++..|++||+++
T Consensus 79 ~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 79 KQIYRGCILTSKD 91 (92)
T ss_dssp SCCCSSCBCCCTT
T ss_pred HHcCCcCEEeCCC
Confidence 588999999864
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.84 E-value=5.2e-09 Score=83.65 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=71.6
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEEe--CCCCc
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALA--GLKDT 464 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i~--gl~~~ 464 (571)
+.+|++.|-.++...+.++...|+|.+|++++||.|...+.+...+|++|+... .++++|.||+.++|. +-.++
T Consensus 4 ~~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~~~~Vk~I~~~~----~~~~~a~~G~~v~l~L~~~~di 79 (92)
T d1zunb1 4 YTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDI 79 (92)
T ss_dssp SSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEESSCCCC
T ss_pred CCCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCCCceEEEeEEEEcC----cccCEEcCCCEEEEEEcCcccc
Confidence 457888887776555556778999999999999999999999999999997665 789999999999984 33347
Q ss_pred cccceecCCCCc
Q 008294 465 ITGETLCDADHP 476 (571)
Q Consensus 465 ~~Gdtl~~~~~~ 476 (571)
..||+||.++++
T Consensus 80 ~RGdvl~~~~~~ 91 (92)
T d1zunb1 80 SRGDLLVHADNV 91 (92)
T ss_dssp CTTCEEEETTSC
T ss_pred CCCCEEecCCCC
Confidence 889999988754
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=98.73 E-value=1.3e-08 Score=85.43 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCeEEEEEEEeecCCCce--------EEEEEEecceeCCCCEEEeCCCCce------------eecceEEEeccCcee
Q 008294 386 DDEPFAGLAFKIMSDPFVGS--------LTFVRVYAGTLSAGSYVLNANKGKK------------ERIGRLLEMHANSRE 445 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~~G~--------i~~~rV~sG~l~~gd~v~~~~~~~~------------~~i~~i~~~~g~~~~ 445 (571)
.+.|++++|.++|...+.|+ +..|+|.+|+|+.||.|...+.++. .+|..|...+ .
T Consensus 5 ~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~----~ 80 (121)
T d1kk1a1 5 PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGG----Q 80 (121)
T ss_dssp TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETT----E
T ss_pred CCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEEECC----C
Confidence 47899999999997655554 9999999999999999998775542 4577766544 7
Q ss_pred ecCeecCCCEEEEe-----CCC--CccccceecCCCCc
Q 008294 446 DVKVALAGDIIALA-----GLK--DTITGETLCDADHP 476 (571)
Q Consensus 446 ~v~~a~aGdiv~i~-----gl~--~~~~Gdtl~~~~~~ 476 (571)
++++|.|||.|+|. +++ ++..|++|+.++..
T Consensus 81 ~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~l 118 (121)
T d1kk1a1 81 FVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKL 118 (121)
T ss_dssp EESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCS
T ss_pred CcCEEeCCCeEEEEecccCCcchhHhcceeEEECCCCC
Confidence 89999999999994 222 46789999887654
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.73 E-value=1.9e-08 Score=84.08 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=68.8
Q ss_pred CCCCCeEEEEEEEeecCCCce--------EEEEEEecceeCCCCEEEeCCCCc------------eeecceEEEeccCce
Q 008294 385 SDDEPFAGLAFKIMSDPFVGS--------LTFVRVYAGTLSAGSYVLNANKGK------------KERIGRLLEMHANSR 444 (571)
Q Consensus 385 ~~~~p~~~~V~k~~~d~~~G~--------i~~~rV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~ 444 (571)
+.+.|++++|.+.|...+.|+ +..|+|.+|+|++||.|...+.++ ..+|.+|....
T Consensus 2 ~~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~---- 77 (118)
T d1s0ua1 2 DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGN---- 77 (118)
T ss_dssp CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETT----
T ss_pred CCCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEEECC----
Confidence 358999999999997665554 999999999999999999876543 35688887654
Q ss_pred eecCeecCCCEEEEeCCC--------CccccceecCCCC
Q 008294 445 EDVKVALAGDIIALAGLK--------DTITGETLCDADH 475 (571)
Q Consensus 445 ~~v~~a~aGdiv~i~gl~--------~~~~Gdtl~~~~~ 475 (571)
.++++|.|||.|+|. |+ ++..|++|+.++.
T Consensus 78 ~~v~~A~aG~~V~i~-l~~d~~i~r~Di~~G~Vl~~pg~ 115 (118)
T d1s0ua1 78 TILRKAHPGGLIGVG-TTLDPYLTKSDALTGSVVGLPGT 115 (118)
T ss_dssp EEESEECSSSCEEEE-CSSCGGGTGGGTTTTCEEESTTC
T ss_pred cccCEEeCCCEEEEE-eccCCCccHHHheeeeEEeCCCC
Confidence 889999999999995 33 3667888887653
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=4.9e-08 Score=77.78 Aligned_cols=80 Identities=21% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCCCe-EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCC-
Q 008294 386 DDEPF-AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGL- 461 (571)
Q Consensus 386 ~~~p~-~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl- 461 (571)
+..|+ +++|.++|..++ |++..|+|.+|++++||.|...+. ..+|+.|...+ .++++|.|||.|++ .+-
T Consensus 5 ~~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p~--~~~VksIq~~~----~~v~~a~~G~~v~l~L~~~~ 77 (91)
T d1xe1a_ 5 SKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSG--IGGIVRIERNR----EKVEFAIAGDRIGISIEGKI 77 (91)
T ss_dssp CSSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSSC--EEEEEEEEETT----EEESEEETTCEEEEEEESCC
T ss_pred cCCCccEeeEEEEEEECC-cEEEEEEEeeCCcCCCCEEEECCc--cEEEEEEEEcc----eEhhhhhhcceeEEEEcCCc
Confidence 35776 899999999999 999999999999999999998774 45788887544 77999999999999 342
Q ss_pred CCccccceecC
Q 008294 462 KDTITGETLCD 472 (571)
Q Consensus 462 ~~~~~Gdtl~~ 472 (571)
+++..||+|..
T Consensus 78 ~di~rGdvL~~ 88 (91)
T d1xe1a_ 78 GKVKKGDVLEI 88 (91)
T ss_dssp CCCCTTCEEEE
T ss_pred CCcCCCCEEEe
Confidence 25889999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=1.1e-07 Score=93.41 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCCCc-------------HHHHHHHHHhcCe-EEEEEeCCCCCchhH-HHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF-------------TLEVERALRVLDG-AICLFDSVAGVEPQS-ETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-------------~~~~~~~l~~~D~-~ilVvda~~g~~~~~-~~~~~~~~~~~~p~ivviNK~D 218 (571)
-..+.||||||.... ...+..++...+. +++|.++........ ..+.+.+...+.+.++|+||+|
T Consensus 124 ~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D 203 (299)
T d2akab1 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccc
Confidence 346999999997531 2334555666664 556666765555443 4455666666788999999999
Q ss_pred cccc
Q 008294 219 RLGA 222 (571)
Q Consensus 219 ~~~~ 222 (571)
+...
T Consensus 204 ~~~~ 207 (299)
T d2akab1 204 LMDE 207 (299)
T ss_dssp GSCT
T ss_pred cccc
Confidence 8753
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.58 E-value=7.7e-08 Score=94.83 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=46.3
Q ss_pred CeEEEEEcCCCCCCc-------------HHHHHHHHHhcCeEEEEE-eCCCCCc-hhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 154 KHRINIIDTPGHVDF-------------TLEVERALRVLDGAICLF-DSVAGVE-PQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-------------~~~~~~~l~~~D~~ilVv-da~~g~~-~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
-..++||||||.... ...+..++..+|.++++| ++..... .....+.+.+...+.+.++|+||+|
T Consensus 130 ~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D 209 (306)
T d1jwyb_ 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (306)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccc
Confidence 356999999997542 244566778888765554 5554443 3345555666666778999999999
Q ss_pred cccc
Q 008294 219 RLGA 222 (571)
Q Consensus 219 ~~~~ 222 (571)
....
T Consensus 210 ~~~~ 213 (306)
T d1jwyb_ 210 LMDK 213 (306)
T ss_dssp SSCS
T ss_pred cccc
Confidence 8643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=3.5e-08 Score=98.03 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=45.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeec----------------eEEEeecCe
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSA----------------ATTTYWNKH 155 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~----------------~~~~~~~~~ 155 (571)
.||++|.||+|||||+|+|. +.....+.+ +.+|. +...|++.... .....+...
T Consensus 2 ~v~lvG~pn~GKStlfn~lt---~~~~~v~ny-pftT~------~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAAT---LVDVEIANY-PFTTI------EANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALI 71 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHH---C---------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEE
T ss_pred cEeEECCCCCCHHHHHHHHH---CCCCchhcC-CCCcc------cCccceeeCCCCchhhhhhhccCccccccccccccc
Confidence 58999999999999999994 544444432 22211 11122221100 000112335
Q ss_pred EEEEEcCCCCCCc-------HHHHHHHHHhcCeEEEEEeCCC
Q 008294 156 RINIIDTPGHVDF-------TLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 156 ~i~liDTPG~~~f-------~~~~~~~l~~~D~~ilVvda~~ 190 (571)
.++++|+||.... .......++.+|++++|||+..
T Consensus 72 ~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred cEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 7999999997553 2223345678899999999963
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.35 E-value=3.3e-07 Score=88.96 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeec-----------------
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWN----------------- 153 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~----------------- 153 (571)
.+|+|||.||+|||||+|+|. +.....+.+ +. +|+......+...
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt---~~~~~~~~y-pf--------------~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~ 64 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALT---KAGIEAANY-PF--------------CTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHH---HTC-------CC--------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred ceEEEECCCCCCHHHHHHHHH---CCCCccccC-CC--------------CCCCCceEEEecccHhHHHHHHhcCCCcee
Confidence 479999999999999999996 222222221 11 1222222222111
Q ss_pred CeEEEEEcCCCCCCcHH-------HHHHHHHhcCeEEEEEeCCC
Q 008294 154 KHRINIIDTPGHVDFTL-------EVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 154 ~~~i~liDTPG~~~f~~-------~~~~~l~~~D~~ilVvda~~ 190 (571)
...+.++|.||...-.. +..+.++.+|+++.|||+..
T Consensus 65 ~a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 23588999999876432 47889999999999999853
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.32 E-value=6.3e-07 Score=74.15 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred CCCCeEEEEEEEeecCC--------CceEEEEEEecceeCCCCEEEeCCCCce------------eecceEEEeccCcee
Q 008294 386 DDEPFAGLAFKIMSDPF--------VGSLTFVRVYAGTLSAGSYVLNANKGKK------------ERIGRLLEMHANSRE 445 (571)
Q Consensus 386 ~~~p~~~~V~k~~~d~~--------~G~i~~~rV~sG~l~~gd~v~~~~~~~~------------~~i~~i~~~~g~~~~ 445 (571)
.+.|++++|.+.|...+ .|.+..|+|.+|+|+.||.|.+.+.++. .+|.+|.... .
T Consensus 3 ~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~----~ 78 (114)
T d2qn6a1 3 LSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGD----E 78 (114)
T ss_dssp TTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETT----E
T ss_pred CCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCCCccccCceeeeeecceEEEEEEECC----c
Confidence 46899999999986544 4559999999999999999998776542 4677776554 8
Q ss_pred ecCeecCCCEEEEeCCC---Ccccccee
Q 008294 446 DVKVALAGDIIALAGLK---DTITGETL 470 (571)
Q Consensus 446 ~v~~a~aGdiv~i~gl~---~~~~Gdtl 470 (571)
++++|.||+.|+|. ++ ++..||.+
T Consensus 79 ~v~~A~aG~~V~i~-l~~d~~isr~D~l 105 (114)
T d2qn6a1 79 EFKEAKPGGLVAIG-TYLDPSLTKADNL 105 (114)
T ss_dssp EESEECSSSCEEEE-ESSCHHHHGGGTT
T ss_pred ccCEEeCCCEEEEE-eccCCCcchhhee
Confidence 89999999999994 33 24445544
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=1.2e-06 Score=84.61 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPG 164 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG 164 (571)
.......+|+|+|.+|+|||||+|+|+. ..... .....|+|.+...+. .+..+.++||||
T Consensus 107 ~~~~~~~~v~vvG~PNvGKSsliN~L~~---~~~~~--------------~~~~pG~Tr~~~~i~---~~~~~~l~DTPG 166 (273)
T d1puja_ 107 GVKPRAIRALIIGIPNVGKSTLINRLAK---KNIAK--------------TGDRPGITTSQQWVK---VGKELELLDTPG 166 (273)
T ss_dssp TCCCCCEEEEEEESTTSSHHHHHHHHHT---SCCC--------------------------CCEE---ETTTEEEEECCC
T ss_pred cCCCCceEEEEEecCccchhhhhhhhhc---cceEE--------------ECCcccccccceEEE---CCCCeEEecCCC
Confidence 4455678899999999999999999972 21111 122356776655443 356799999999
Q ss_pred CC
Q 008294 165 HV 166 (571)
Q Consensus 165 ~~ 166 (571)
..
T Consensus 167 i~ 168 (273)
T d1puja_ 167 IL 168 (273)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.27 E-value=6.7e-07 Score=87.51 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEee-----------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYW----------------- 152 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~----------------- 152 (571)
...|+|||.||+|||||+|+|.... ....+. ++ ++|+......+..
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~--~~~~an-yp--------------ftTi~pn~g~v~v~d~r~~~l~~~~~~~~~ 72 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV--LGNPAN-YP--------------YATIDPEEAKVAVPDERFDWLCEAYKPKSR 72 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST--TTSTTC-CS--------------SCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC--CCCcCC-CC--------------ccCccCCeEEEeccccchhhhhhcccCCce
Confidence 3579999999999999999996221 111121 12 2344433333322
Q ss_pred cCeEEEEEcCCCCCC-------cHHHHHHHHHhcCeEEEEEeCCC
Q 008294 153 NKHRINIIDTPGHVD-------FTLEVERALRVLDGAICLFDSVA 190 (571)
Q Consensus 153 ~~~~i~liDTPG~~~-------f~~~~~~~l~~~D~~ilVvda~~ 190 (571)
....+.++|.||... ........++.+|++++|||+.+
T Consensus 73 ~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 73 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 235789999999754 35678999999999999999975
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=4e-06 Score=78.18 Aligned_cols=142 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeee--ecCcccccchhh--hhhhceeEeeceEEEee------------
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV--HEGTATMDWMEQ--EQERGITITSAATTTYW------------ 152 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~--~~g~~~~d~~~~--e~~~g~t~~~~~~~~~~------------ 152 (571)
+++...|.|..|||||||+++|+...... +.+-+ +.|..-.|.... ....-..+...+.++..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~-riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~ 80 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQHGY-KIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 80 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCC-CEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhcCCCC-cEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHH
Confidence 58899999999999999999999643211 11111 112211111100 00111233344444432
Q ss_pred -------cCeEEEEEcCCCCCCcHHHHHH--------HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 153 -------NKHRINIIDTPGHVDFTLEVER--------ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 153 -------~~~~i~liDTPG~~~f~~~~~~--------~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
......+|.|.|..+-..-+.. .....|.+|.|||+..+.......- ....+...--++|+||+
T Consensus 81 ~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~-~~~~Qi~~AD~ivlNK~ 159 (222)
T d1nija1 81 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADRILLTKT 159 (222)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCH-HHHHHHHTCSEEEEECT
T ss_pred HHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhH-HHHHHHHhCCccccccc
Confidence 1245789999998874333211 1223588999999987543222111 11112223458999999
Q ss_pred CccccchhhhHHHHHH
Q 008294 218 DRLGANFFRTRDMIVT 233 (571)
Q Consensus 218 D~~~~~~~~~~~~i~~ 233 (571)
|+... .+++.+.+++
T Consensus 160 Dl~~~-~~~~~~~l~~ 174 (222)
T d1nija1 160 DVAGE-AEKLHERLAR 174 (222)
T ss_dssp TTCSC-THHHHHHHHH
T ss_pred ccccH-HHHHHHHHHH
Confidence 99753 3444455544
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.09 E-value=1e-05 Score=74.22 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=66.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCcccccchhh----hhhhceeEeeceEE-------------E
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQ----EQERGITITSAATT-------------T 150 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d~~~~----e~~~g~t~~~~~~~-------------~ 150 (571)
+.+.|+++|++|+||||.+-.|....... .+.+-+...+...--.++ -..-|+.+...... .
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 34688999999999999998886332111 111111111100000000 01122222111000 0
Q ss_pred eecCeEEEEEcCCCCCCcHHHH-------HHHHH-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 151 YWNKHRINIIDTPGHVDFTLEV-------ERALR-----VLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 151 ~~~~~~i~liDTPG~~~f~~~~-------~~~l~-----~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++.+.||||||...+..+. ..... ..+-.++|+|+..+... ..+........++. =++++|+|
T Consensus 85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~-~lI~TKlD 162 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG-LEQAKKFHEAVGLT-GVIVTKLD 162 (207)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH-HHHHHHHHHHHCCS-EEEEECTT
T ss_pred HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH-HHHHHHhhhccCCc-eEEEeccC
Confidence 0136789999999965543332 22222 12568999999887533 33333333444433 56899999
Q ss_pred cc
Q 008294 219 RL 220 (571)
Q Consensus 219 ~~ 220 (571)
-.
T Consensus 163 et 164 (207)
T d1okkd2 163 GT 164 (207)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=1e-06 Score=81.83 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+++|++|+|||||+|+|+.. ...+.+.+. ....+.+.+|.......+..+ -.+|||||..+|
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~--~~~~T~~vs--------~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPG--LKLRVSEVS--------EKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT--CCCC---------------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcch--hhhhccCcc--------cccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 57899999999999999999622 111222211 112233455665555554333 479999998775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=8.1e-06 Score=75.21 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=67.5
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhc---CCcceeeeeecCc-ccccchh-hhhhhceeEeeceEE-----------
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYT---GRNYKIGEVHEGT-ATMDWME-QEQERGITITSAATT----------- 149 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~---g~~~~~g~~~~g~-~~~d~~~-~e~~~g~t~~~~~~~----------- 149 (571)
+.+....|+++|++|+||||.+-.|.... |........+... -..+... --+.-|+.+......
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 86 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 86 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence 34455688999999999999988886332 2111111111100 0000000 001223322211100
Q ss_pred --EeecCeEEEEEcCCCCCCcHHHHHHHH----Hh--------cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEe
Q 008294 150 --TYWNKHRINIIDTPGHVDFTLEVERAL----RV--------LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVN 215 (571)
Q Consensus 150 --~~~~~~~i~liDTPG~~~f~~~~~~~l----~~--------~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviN 215 (571)
...+++.+.||||||...+..+....+ +. .+-.++|+|+..+... ..+........+ +-=++++
T Consensus 87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~-~~~lI~T 164 (213)
T d1vmaa2 87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNG-LVQAKIFKEAVN-VTGIILT 164 (213)
T ss_dssp HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHH-HHHHHHHHHHSC-CCEEEEE
T ss_pred HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcch-hhhhhhhccccC-CceEEEe
Confidence 001467899999999766544433322 21 2568999999765222 222223333333 3457899
Q ss_pred cCCcc
Q 008294 216 KMDRL 220 (571)
Q Consensus 216 K~D~~ 220 (571)
|+|-.
T Consensus 165 KlDe~ 169 (213)
T d1vmaa2 165 KLDGT 169 (213)
T ss_dssp CGGGC
T ss_pred cccCC
Confidence 99963
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.96 E-value=1.9e-05 Score=72.34 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=65.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCcccccchhh----hhhhceeEeeceEE-------------Ee
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQ----EQERGITITSAATT-------------TY 151 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d~~~~----e~~~g~t~~~~~~~-------------~~ 151 (571)
...|+++|++|+||||.+-.|.+..... .+.+-+...+...-..++ -..-|+.+...... ..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 89 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 89 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHh
Confidence 4567899999999999999986332110 111111111100000000 01112222211000 01
Q ss_pred ecCeEEEEEcCCCCCCcHHHHHHH------HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcc
Q 008294 152 WNKHRINIIDTPGHVDFTLEVERA------LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRL 220 (571)
Q Consensus 152 ~~~~~i~liDTPG~~~f~~~~~~~------l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~ 220 (571)
..++.+.||||||........... ....|-+++|+|+..+..... .........++ .=++++|+|-.
T Consensus 90 ~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~-~~~~f~~~~~~-~~~I~TKlDe~ 162 (207)
T d1ls1a2 90 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS-VARAFDEKVGV-TGLVLTKLDGD 162 (207)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH-HHHHHHHHTCC-CEEEEECGGGC
T ss_pred hccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH-HHHHHHhhCCC-CeeEEeecCcc
Confidence 246789999999965543332222 233488999999977633222 22222223343 34789999953
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.94 E-value=1.9e-05 Score=72.56 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCcccccchh----hhhhhceeEeeceEEE---------
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWME----QEQERGITITSAATTT--------- 150 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d~~~----~e~~~g~t~~~~~~~~--------- 150 (571)
.+.+....|+++|++|+||||.+-.|.+..... .+.+-+...+....-.+ --..-|+.+......-
T Consensus 7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a 86 (211)
T d1j8yf2 7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG 86 (211)
T ss_dssp SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence 444556778999999999999998886332110 11111111110000000 0112223222111000
Q ss_pred ----eecCeEEEEEcCCCCCCcH------HHHHHH--HHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 151 ----YWNKHRINIIDTPGHVDFT------LEVERA--LRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 151 ----~~~~~~i~liDTPG~~~f~------~~~~~~--l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
...++.+.||||||...+. .++... ....+-.++|+|+..+.... ..........++ -=++++|+|
T Consensus 87 ~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~~~~~~~~-~~lI~TKlD 164 (211)
T d1j8yf2 87 VEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY-DLASKFNQASKI-GTIIITKMD 164 (211)
T ss_dssp HHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-HHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchH-HHHhhhhcccCc-ceEEEeccc
Confidence 1256789999999963321 222222 22347789999998765432 233333344443 346799999
Q ss_pred cc
Q 008294 219 RL 220 (571)
Q Consensus 219 ~~ 220 (571)
..
T Consensus 165 et 166 (211)
T d1j8yf2 165 GT 166 (211)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=2.9e-05 Score=71.21 Aligned_cols=127 Identities=16% Similarity=0.078 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCc-ceeeeeecCcccccchhhh------hhhceeEeeceEEE------------
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRN-YKIGEVHEGTATMDWMEQE------QERGITITSAATTT------------ 150 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~-~~~g~~~~g~~~~d~~~~e------~~~g~t~~~~~~~~------------ 150 (571)
...|+++|++|+||||.+-.|....... .+.+-+...+.. .-..| ..-|+.+......-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R--~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR--AAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC--HHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc--ccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 4578999999999999999997332111 111111111100 00011 12222222110000
Q ss_pred -eecCeEEEEEcCCCCCCcHHHHHH-------HHHh-----cCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecC
Q 008294 151 -YWNKHRINIIDTPGHVDFTLEVER-------ALRV-----LDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKM 217 (571)
Q Consensus 151 -~~~~~~i~liDTPG~~~f~~~~~~-------~l~~-----~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~ 217 (571)
..+++.+.||||||......+... .+.. .+-.++|+|+..+.... .+........+ +.=++++|+
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~-~~~~~~~~~~~-~~~lIlTKl 164 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEAVG-LTGITLTKL 164 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHH-HHHHHHHHHSC-CCEEEEECC
T ss_pred HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchH-HHHhhhhhccC-CceEEEeec
Confidence 014578999999995443222222 2221 25789999998763332 22333333333 445789999
Q ss_pred Ccc
Q 008294 218 DRL 220 (571)
Q Consensus 218 D~~ 220 (571)
|-.
T Consensus 165 De~ 167 (211)
T d2qy9a2 165 DGT 167 (211)
T ss_dssp TTC
T ss_pred CCC
Confidence 963
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.83 E-value=6.6e-05 Score=59.52 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=71.1
Q ss_pred CCCeEEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCc--eeecceEEEe--------ccCceeecCeecCCCEE
Q 008294 387 DEPFAGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGK--KERIGRLLEM--------HANSREDVKVALAGDII 456 (571)
Q Consensus 387 ~~p~~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~--------~g~~~~~v~~a~aGdiv 456 (571)
++|..+.|.....|++.|.++.+-|++|+|+.||.+....... ..+|..|+.+ ..+..+.+++|.|..=+
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCce
Confidence 6889999999999999999999999999999999998765443 3568888753 45567889999999888
Q ss_pred EEe--CCCCccccceec
Q 008294 457 ALA--GLKDTITGETLC 471 (571)
Q Consensus 457 ~i~--gl~~~~~Gdtl~ 471 (571)
-|. ||+++..|+.|.
T Consensus 82 kI~a~gLe~v~aG~~~~ 98 (101)
T d1g7sa1 82 KIVAPGIDDVMAGSPLR 98 (101)
T ss_dssp EEECSSCTTBCTTCEEE
T ss_pred EEEcCCCCcCCCCCEEE
Confidence 885 899888898764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.76 E-value=3.6e-06 Score=78.27 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDF 168 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f 168 (571)
+..+++|++|+|||||+|+|+.. ...+.+.+.. ...+.+.+|....... .++ =.+|||||..+|
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~--~~~~t~~vs~--------~~~rGrHTTt~~~l~~--~~g--g~iiDTPG~r~~ 161 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE--LGLRTNEISE--------HLGRGKHTTRHVELIH--TSG--GLVADTPGFSSL 161 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-----------------------------CCCCCEEE--ETT--EEEESSCSCSSC
T ss_pred ceEEEECCCCccHHHHHHhhccH--hHhhhccccc--------ccCCCceeeeeEEEEe--cCC--CEEEECCccccc
Confidence 56789999999999999999621 1112222110 1112233444444332 233 258899999875
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.75 E-value=5.4e-05 Score=63.55 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=51.4
Q ss_pred eEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCC---CccccceecC
Q 008294 405 SLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLK---DTITGETLCD 472 (571)
Q Consensus 405 ~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~---~~~~Gdtl~~ 472 (571)
.+.-+||.+|+|++||.|.+.+.+...+|++|.. + .+++++|.+|+-|+| .|.. ++..||+|+.
T Consensus 21 ~ivgv~V~sG~ik~G~~l~~~p~~~~g~VksIq~-~---~~~v~~A~~G~~Vai~I~g~~~gr~i~~gD~L~s 89 (128)
T d1g7sa2 21 AIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQD-K---GENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYV 89 (128)
T ss_dssp EEEEEEEEEEEEETTCEEECTTSCEEEEEEEEEE-T---TEEESEEETTCCEEEEEETCCBTTTBCTTCEEEE
T ss_pred eEEEEEEeeeeecCCCEEEECCCCceEEEEEEEE-C---CccccEEcCCCEEEEEEcCcccCCCCCCCCEEEE
Confidence 3455599999999999999998888778887753 3 278999999999998 4443 4778998874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.50 E-value=8.3e-05 Score=71.24 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=44.3
Q ss_pred cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 168 FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 168 f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
...++...+..+|++|+|+||..+.......+.+.++ ++|+|+|+||+|+...
T Consensus 5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~ 57 (273)
T d1puja_ 5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA 57 (273)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch
Confidence 3566778899999999999999999888776666553 7899999999998753
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.37 E-value=0.00062 Score=62.76 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCcccc
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGA 222 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~ 222 (571)
+.+.+.++|||+... .....++..+|.+++|+.....-...+.+.++.+++.++|++ +|+||.|+...
T Consensus 110 ~~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~~ 178 (237)
T d1g3qa_ 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTT
T ss_pred hcCCEEEEccccccc--ccchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccccc
Confidence 357899999998754 567778889999999998754334556677788888899987 88999987543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.00066 Score=62.35 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=34.1
Q ss_pred HhcCeEEEEEeCCCC-Cch-hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 177 RVLDGAICLFDSVAG-VEP-QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 177 ~~~D~~ilVvda~~g-~~~-~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
...|.+++|+.+.+. ... .-.+.+-.+...++|.+||+||+|+...
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~ 56 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE 56 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCH
Confidence 346899999987653 332 2334566778899999999999999754
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.17 E-value=0.0019 Score=59.10 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=56.3
Q ss_pred cCeEEEEEcCCCCCCcHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhhHHHH
Q 008294 153 NKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRTRDMI 231 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~i 231 (571)
..+.+.++|||+... ......+..+|.+++|+.....-.......+..+.+.+.+.+ +|+||.+.... +...+.+
T Consensus 108 ~~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~--~~~~~~i 183 (232)
T d1hyqa_ 108 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEI 183 (232)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHH
T ss_pred hccceeeeccccccc--chhHHHhhhhheeeeeccccccchhhhhhhhhhhhhcccccccccccccccccc--cchhhhH
Confidence 357799999999765 455667888999999998743222333445566667788765 67899875432 3345667
Q ss_pred HHHhCCcc
Q 008294 232 VTNLGAKP 239 (571)
Q Consensus 232 ~~~l~~~~ 239 (571)
.+.++...
T Consensus 184 ~~~~~~~~ 191 (232)
T d1hyqa_ 184 EAILEAKV 191 (232)
T ss_dssp HHHTTSCE
T ss_pred HhhcCCeE
Confidence 77777643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.14 E-value=0.00013 Score=66.12 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCC
Q 008294 175 ALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMD 218 (571)
Q Consensus 175 ~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D 218 (571)
.+...++.++++|+......+-......+...+.+.+++.++++
T Consensus 80 ~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T d1bifa1 80 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123 (213)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 34455677889999988777777777888888999998888886
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.97 E-value=0.00072 Score=53.42 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=61.3
Q ss_pred EEEEEEEeecCCCceEEEEEEecceeCCCCEEEeCCCCceeecceEEEeccCceeecCeecCCCEEEE--eCCCCccccc
Q 008294 391 AGLAFKIMSDPFVGSLTFVRVYAGTLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIAL--AGLKDTITGE 468 (571)
Q Consensus 391 ~~~V~k~~~d~~~G~i~~~rV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~Gd 468 (571)
.|.|-++|.....|.++-+||.+|.++.+..+.+.+.+...--++|..+. +...+|+++..|.=|+| .+..++..||
T Consensus 8 ~A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk-~~K~~V~eV~~G~ECGi~l~~~~d~~~GD 86 (99)
T d1d1na_ 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK-RYKDDVREVAQGYECGLTIKNFNDIKEGD 86 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE-CSSSCCSCCBTTCEEEEECTTCSSCSSCS
T ss_pred EEEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecCCEEEEEeEEeeec-ccccccCEecCCeEEEEEecCccCCCCCC
Confidence 35666667666779999999999999999999999887654333333344 33488999999999999 4455688999
Q ss_pred eec
Q 008294 469 TLC 471 (571)
Q Consensus 469 tl~ 471 (571)
+|-
T Consensus 87 ~ie 89 (99)
T d1d1na_ 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 983
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.002 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
++.|+|+|.+|+|||||+++|+.
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.002 Score=56.19 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
|+|.|+|++|+|||||+.+++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999733
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=96.45 E-value=0.0062 Score=57.18 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=49.5
Q ss_pred CeEEEEEcCCCCCC-cHHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCCe-EEEEecCCccccchhhh
Q 008294 154 KHRINIIDTPGHVD-FTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADK----YGVPR-ICFVNKMDRLGANFFRT 227 (571)
Q Consensus 154 ~~~i~liDTPG~~~-f~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~----~~~p~-ivviNK~D~~~~~~~~~ 227 (571)
.+.+.++|||+... .......+...+|.+++++++....-.........+.. .+.+. -+|+|+.+... ..+.
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~--~~~~ 192 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC--ccch
Confidence 57899999997543 23334455567899988887642111111222222322 33333 37889987543 3456
Q ss_pred HHHHHHHhCCcc
Q 008294 228 RDMIVTNLGAKP 239 (571)
Q Consensus 228 ~~~i~~~l~~~~ 239 (571)
++++.+.++...
T Consensus 193 ~~~~~~~~~~~~ 204 (269)
T d1cp2a_ 193 LDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHTCCE
T ss_pred hhhhHhhcCCeE
Confidence 777888888754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.0021 Score=56.50 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=54.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCCCcH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHVDFT 169 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~~f~ 169 (571)
..-|.++|.+|+||||++..|+...+...- +. ++. . -.....
T Consensus 14 p~liil~G~pGsGKST~a~~l~~~~~~~~i-----------~~--D~~---------------~----------~~~~~~ 55 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV-----------NR--DTL---------------G----------SWQRCV 55 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTGGGTCEEE-----------EH--HHH---------------C----------SHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCCEEE-----------ch--HHH---------------H----------HHHHHH
Confidence 457899999999999999999643331110 00 000 0 001122
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeEEEEecCCc
Q 008294 170 LEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 219 (571)
Q Consensus 170 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~ 219 (571)
.....++.. +..+|+|++.....+-...+..++..+.++.+|.=..|.
T Consensus 56 ~~~~~~l~~--g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~ 103 (172)
T d1yj5a2 56 SSCQAALRQ--GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI 103 (172)
T ss_dssp HHHHHHHHT--TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCH
T ss_pred HHHHHHHHC--CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCH
Confidence 333444443 445678998866666666677888899998777655553
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.00095 Score=58.47 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.++|+|+|.+|+|||||+++|....|
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999986655
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.0037 Score=59.36 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=53.3
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcCCcceeeeeecCcccccchhhhhhhceeEeeceEEEeecCeEEEEEcCCCCC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTYWNKHRINIIDTPGHV 166 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~~~g~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~liDTPG~~ 166 (571)
..++..|+|+|...+|||+|+|.|+....... .|.+. ....+|+-+..... ....+..+.++||.|..
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~------~~~~~-----~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~ 96 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFS------LGSTV-----QSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG 96 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSC------CCCSS-----SCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCc------cCCCC-----CCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence 44688999999999999999999973221110 01000 01123432221111 11246689999999975
Q ss_pred Cc--------HHHHHHHHHhcCeEEEEEeCCCCCchhHHH
Q 008294 167 DF--------TLEVERALRVLDGAICLFDSVAGVEPQSET 198 (571)
Q Consensus 167 ~f--------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~ 198 (571)
+. .....-++-.++..|+=+.. .+.....+
T Consensus 97 ~~~~~~~~~~~~i~~l~~llSs~~i~N~~~--~~~~~~l~ 134 (277)
T d1f5na2 97 DVEKGDNQNDSWIFALAVLLSSTFVYNSIG--TINQQAMD 134 (277)
T ss_dssp CGGGCCCTTHHHHHHHHHHHCSEEEEEEES--CSSHHHHH
T ss_pred ccccccchhHHHHHHHHHHHhCEEEEeccc--cCcHHHHH
Confidence 42 11233345567876655543 33444433
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.0096 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+.|+|+|.+|+|||||+++|+
T Consensus 2 kii~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999997
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.015 Score=52.06 Aligned_cols=87 Identities=9% Similarity=-0.015 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCCCCc-----HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCCccccchhhh
Q 008294 154 KHRINIIDTPGHVDF-----TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMDRLGANFFRT 227 (571)
Q Consensus 154 ~~~i~liDTPG~~~f-----~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~~~~~ 227 (571)
.+.+.++|+++.... ...........+.+++|++...+....+......+...+...+ +|+|+.|.......+.
T Consensus 108 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~ 187 (224)
T d1byia_ 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEY 187 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHH
T ss_pred ccceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHHHHHHHhccCCccEEEEEeCcCCCchHHHHH
Confidence 567899999876431 1112223334467778888777655666666667777777765 7789999766667778
Q ss_pred HHHHHHHhCCcce
Q 008294 228 RDMIVTNLGAKPL 240 (571)
Q Consensus 228 ~~~i~~~l~~~~~ 240 (571)
++.+.+.+|....
T Consensus 188 ~~~l~~~~gi~vl 200 (224)
T d1byia_ 188 MTTLTRMIPAPLL 200 (224)
T ss_dssp HHHHHHHSSSCEE
T ss_pred HHHHHHHhCCCEE
Confidence 8999999987543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.08 E-value=0.0026 Score=58.45 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=34.1
Q ss_pred HhcCeEEEEEeCCCC-Cch-hHHHHHHHHHhcCCCeEEEEecCCcccc
Q 008294 177 RVLDGAICLFDSVAG-VEP-QSETVWRQADKYGVPRICFVNKMDRLGA 222 (571)
Q Consensus 177 ~~~D~~ilVvda~~g-~~~-~~~~~~~~~~~~~~p~ivviNK~D~~~~ 222 (571)
...|.+++|+++.+. ... .-.+.+-.+...+++.+||+||+|+...
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~ 56 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 56 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEeccccccc
Confidence 356889999988653 332 3334566677889999999999999753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.66 E-value=0.0026 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.++|+++|.+|+||||++++|....|
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence 46899999999999999999975544
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=95.50 E-value=0.0034 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+|+|+|++|+|||||+..++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 6899999999999999999743
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=95.40 E-value=0.01 Score=56.36 Aligned_cols=85 Identities=8% Similarity=-0.066 Sum_probs=47.3
Q ss_pred cCeEEEEEcCCCCCCc-HHHHHHHHHhcCeEEEEEeCCCCCchhHHHHHHHH---H-hcCCCeE-EEEecCCccccchhh
Q 008294 153 NKHRINIIDTPGHVDF-TLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA---D-KYGVPRI-CFVNKMDRLGANFFR 226 (571)
Q Consensus 153 ~~~~i~liDTPG~~~f-~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~---~-~~~~p~i-vviNK~D~~~~~~~~ 226 (571)
+.+.+.+||||+.... ......+...+|.+++++.....-.......+..+ . ..+.++. +|+|+.+... ..+
T Consensus 117 ~~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~--~~~ 194 (289)
T d2afhe1 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR--EDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT--HHH
T ss_pred ccCCeEeeccCCccCHHHHHHHHHhhccceeecccchhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh--hHH
Confidence 4678999999986532 22223334567888877755321111112222222 2 2234433 7889987433 356
Q ss_pred hHHHHHHHhCCcc
Q 008294 227 TRDMIVTNLGAKP 239 (571)
Q Consensus 227 ~~~~i~~~l~~~~ 239 (571)
..+++.+.+|...
T Consensus 195 ~~~~~~~~~g~~v 207 (289)
T d2afhe1 195 LIIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHHTSCE
T ss_pred HHHHHHHHcCCeE
Confidence 6788888888643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0059 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
++|.++|++|+||||+...|....|
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999975544
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.91 E-value=0.0073 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.135 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
..+|+++|++|+||||+.+.|....
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997544
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.89 E-value=0.0074 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.|+++|.+|+|||||+++|+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999974
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.83 E-value=0.011 Score=57.28 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+||.|+|.+|+|||||+++|+
T Consensus 167 ~nili~G~tgSGKTT~l~al~ 187 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIM 187 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CCEEEEeeccccchHHHHHHh
Confidence 589999999999999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.69 E-value=0.0076 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+||+++|.+|+||||+...|....|
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976555
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.69 E-value=0.011 Score=52.41 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+...|+|+|++|+||||++..|....|.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~ 32 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3468899999999999999999866553
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.64 E-value=0.01 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|++|+||||++++|....+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999975543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.014 Score=51.76 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=24.8
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+.+.|+|+|++|+||||++..|....|.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45788999999999999999999866553
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.47 E-value=0.012 Score=51.80 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=23.0
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.......|+|.|.+|+|||||+++|...
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3344567999999999999999999743
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.37 E-value=0.0099 Score=51.66 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.|+|.|.+|+||||+++.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999643
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.018 Score=53.15 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|++|+|||||++.|+
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~ 50 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQ 50 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999995
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.28 E-value=0.01 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
++|+++|.+|+||||+...|....|
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999975554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.13 E-value=0.014 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
++..+|.++|.+|+||||+..+|...
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999633
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.03 E-value=0.019 Score=50.83 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+..+|+|+|++|+||||+...|....|.
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~ 32 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKHFEL 32 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHHBCC
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHCC
Confidence 35568999999999999999999866553
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.97 E-value=0.015 Score=50.55 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+|+|++|+||||++..|....|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~ 26 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999755543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.025 Score=52.51 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|+
T Consensus 40 Ge~vaivG~sGsGKSTLl~li~ 61 (251)
T d1jj7a_ 40 GEVTALVGPNGSGKSTVAALLQ 61 (251)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3479999999999999999995
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.88 E-value=0.018 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|.|.|.+|+||||+.++|....+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999986655
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.77 E-value=0.13 Score=46.42 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+++.+.|++|+||||++..|....+.
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999865553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.70 E-value=0.016 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+.|+++|++|+||||+.+.|...
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.66 E-value=0.017 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+|+|+|++|+||||++..|....|.
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~~~ 29 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKYQL 29 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 46899999999999999999765553
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.12 Score=47.04 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=25.6
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.....+.+.+.|++|+||||++.++....+.
T Consensus 48 ~~~~~~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 48 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp STTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445678999999999999999999876653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.024 Score=48.50 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+.++++|.+|+||||+..+|....+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999986554
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.022 Score=52.19 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCCcceeeee
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGRNYKIGEV 123 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~~~~~g~~ 123 (571)
-.++++|+.|+|||||++.|. |.....|++
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~---Gl~~~~G~I 55 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMA---GMTSGKGSI 55 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHH---TSCCCSSEE
T ss_pred CEEEEECCCCCcHHHHHHHHh---CCCCCceEE
Confidence 378999999999999999995 444344554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.57 E-value=0.02 Score=49.91 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+|+|.+|+||||+...|....|.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~ 26 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGI 26 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 7899999999999999999865553
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.39 E-value=0.019 Score=52.55 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.+.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~ 52 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIG 52 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCcchhhHhcc
Confidence 478999999999999999883
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.052 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+.+||++|+|||+++..|..
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHH
Confidence 45899999999999999999973
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.28 E-value=0.024 Score=49.53 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+|+|++|+||||++..|....|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~ 26 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGT 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999865553
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.023 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+|+|++|+||||+...|....|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6889999999999999999765553
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.14 E-value=0.022 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+|.++|.+|+||||+...|....|.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~ 28 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGY 28 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36789999999999999999766553
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.14 E-value=0.021 Score=53.14 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|++|+|||||++.|+
T Consensus 42 e~iaivG~sGsGKSTLl~ll~ 62 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLIT 62 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 479999999999999999995
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.025 Score=51.77 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.+.
T Consensus 27 ei~~liGpsGsGKSTLl~~i~ 47 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIA 47 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 478999999999999999885
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=93.02 E-value=0.023 Score=52.42 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|+
T Consensus 28 Ge~vaivG~sGsGKSTLl~ll~ 49 (242)
T d1mv5a_ 28 NSIIAFAGPSGGGKSTIFSLLE 49 (242)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999995
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.01 E-value=0.03 Score=49.17 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+|+|+|++|+||||+...|....|
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999976555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.98 E-value=0.025 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+-|+|+|++|+|||||++.|+...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999998543
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.97 E-value=0.023 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.+.
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~ 48 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTIS 48 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 468999999999999999994
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.033 Score=49.90 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...|||.|.+|+|||||.+.|....+
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999975443
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.025 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.4
Q ss_pred EEEEcCCCCchHHHHHHHHHh
Q 008294 93 IGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
|+|+|++|+|||||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.77 E-value=0.026 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|+
T Consensus 62 Ge~vaivG~nGsGKSTLl~~i~ 83 (281)
T d1r0wa_ 62 GEMLAITGSTGSGKTSLLMLIL 83 (281)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3479999999999999999996
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.71 E-value=0.029 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.+.
T Consensus 33 e~~~liGpsGaGKSTLl~~i~ 53 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIA 53 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHH
Confidence 478999999999999999995
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=0.083 Score=49.42 Aligned_cols=38 Identities=5% Similarity=-0.025 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCCchhHHHHHHHHHhcCCCeE-EEEecCC
Q 008294 181 GAICLFDSVAGVEPQSETVWRQADKYGVPRI-CFVNKMD 218 (571)
Q Consensus 181 ~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D 218 (571)
.+++|..+..-....+++.+..+...++|+. +|+||+-
T Consensus 200 ~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v~ 238 (296)
T d1ihua1 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (296)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred eeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCCc
Confidence 4566665543233456677788888899974 7789973
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.70 E-value=0.034 Score=49.08 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+.|.|+|++|+||||++..|....|.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~ 34 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGY 34 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999866553
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.036 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|+|++|+||||++..|....|
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999976555
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.019 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+...|.++|.+|+||||+.+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.47 E-value=0.032 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.+.
T Consensus 30 e~~~liG~sGaGKSTll~~i~ 50 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIA 50 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 378999999999999999995
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.035 Score=48.52 Aligned_cols=23 Identities=4% Similarity=0.224 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+-|+|+|++|+|||||+++|+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.029 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~ 52 (240)
T d3dhwc1 31 GQIYGVIGASGAGKSTLIRCVN 52 (240)
T ss_dssp SCEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHc
Confidence 3478999999999999999994
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.04 Score=47.95 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 92 NIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+|+|+|.+|+||||+...|....|.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~ 28 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHA 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999866553
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.28 E-value=0.033 Score=51.08 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll 111 (571)
.++++|+.|||||||++.|.
T Consensus 26 ~~~liGpnGaGKSTll~~i~ 45 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 56899999999999999995
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.24 E-value=0.036 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.|+|.|.+|+||||+++.|...
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=92.19 E-value=0.025 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll 111 (571)
.++++|+.|||||||++.|.
T Consensus 28 ~~~liGpsGaGKSTll~~l~ 47 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIA 47 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999995
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=92.03 E-value=0.037 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.+.
T Consensus 33 ei~~liGpnGaGKSTl~~~i~ 53 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999995
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.082 Score=50.32 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=24.7
Q ss_pred ccCCCCCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 83 RVIPLKDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 83 ~~~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.....+....|+|.|.+|+|||||.+.|...
T Consensus 73 ~~~~~k~P~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 73 GTNGQRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp TCC-CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEeCCCCCCCcHHHHHHHHH
Confidence 4455566789999999999999999988643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=91.87 E-value=0.048 Score=50.57 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++|+|++|+|||||++.|+
T Consensus 45 e~vaivG~sGsGKSTLl~ll~ 65 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIP 65 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTT
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 479999999999999999885
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=91.81 E-value=0.041 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|+|||||++.|.
T Consensus 29 ei~glvG~nGaGKSTLl~~l~ 49 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIIS 49 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999995
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.77 E-value=0.062 Score=49.52 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=24.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+..+.|.+.|++|+|||||+.+|....+
T Consensus 28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 334456799999999999999999985544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.73 E-value=0.039 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred EEEEcCCCCchHHHHHHHHHhcC
Q 008294 93 IGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
|+|+|++|+|||||+++|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999985543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.71 E-value=0.042 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=21.6
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.++...|+|-|..|+||||+++.|.
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHH
Confidence 3445689999999999999999985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=91.70 E-value=0.042 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-.++|+|+.|+|||||++.|.
T Consensus 28 GEi~~iiG~sGsGKSTLl~~i~ 49 (258)
T d1b0ua_ 28 GDVISIIGSSGSGKSTFLRCIN 49 (258)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3479999999999999999994
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.044 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
.-|+|+|++|+|||||+++|+...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999998553
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.27 E-value=0.058 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...|||.|.+||||||+++.|-
T Consensus 3 p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.17 E-value=0.2 Score=42.46 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.5
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcCCc
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTGRN 117 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g~~ 117 (571)
..-.|++.|..|||||||+..++...|..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 34578999999999999999999777654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.03 E-value=0.031 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
--.++++|+.|+|||||++.+.
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~ 52 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIA 52 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3479999999999999999995
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.93 E-value=0.055 Score=50.15 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
-.++++|+.|||||||++.|.
T Consensus 31 ei~~liG~nGaGKSTLl~~i~ 51 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVIT 51 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999995
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.78 E-value=0.068 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.041 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
+.|+|.|++|+||||+...|....|
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999986554
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.71 E-value=0.067 Score=48.61 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
..+++.+.|++|+||||++..+....+
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999975544
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.31 Score=44.97 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=19.7
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
...+.|++.|-.|+||||+.-.|.
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345778889999999999977774
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.63 E-value=0.86 Score=40.37 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=18.4
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 008294 93 IGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+.|++|+|||-|+.++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999974
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.39 E-value=0.079 Score=47.42 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHH
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
++...|.++|.+|+|||||.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999996
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.094 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..|+.+||++|+|||+++..|..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHH
Confidence 35899999999999999999963
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.4 Score=44.04 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
...+.+.+.|++|+|||+|++++....+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3457899999999999999999975443
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.98 E-value=0.049 Score=51.31 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.8
Q ss_pred CeeEEEEEcCCCCchHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+.+.|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999986
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.86 E-value=0.094 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+|+|-|++|+||||+...|....|
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999999999986555
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.73 E-value=0.13 Score=47.33 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
....+.|.+.|++|+|||+|+.++...++
T Consensus 37 ~~p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 37 RTPLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHhhccc
Confidence 34568899999999999999999975443
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.52 E-value=0.042 Score=49.62 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+++.+.|++|+||||++.++...
T Consensus 35 ~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 35 LPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHH
Confidence 456899999999999999999744
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.42 E-value=0.12 Score=47.30 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
....+++.|.|++|+||||++..+....
T Consensus 40 ~~~~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 40 GHHYPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999997543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.061 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+-|+|-|..||||||+++.|..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998853
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.25 E-value=0.11 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
+.+++.+.|++|+||||++..+..
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999974
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.21 E-value=0.088 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.293 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 008294 92 NIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll 111 (571)
-|+|-|..|+||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999996
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.53 E-value=0.42 Score=44.13 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
.+.+-+.|++++|||||+-.++.
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 35778999999999999988863
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.11 E-value=0.13 Score=48.95 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.+.|.++|++|+|||.|+.+|....+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 46899999999999999999975443
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.44 E-value=0.15 Score=46.52 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
+.|+|.|+.|+|||||+.+++...+.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~~~ 55 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINELNL 55 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence 57889999999999999999865543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.33 E-value=0.34 Score=44.56 Aligned_cols=30 Identities=30% Similarity=0.232 Sum_probs=24.3
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.....+.|.+.|++|+|||+|++++....+
T Consensus 34 g~~~~~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 34 GVKPPRGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCceeEEecCCCCCchHHHHHHHHHhC
Confidence 344456899999999999999999985544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.23 E-value=0.17 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.+++.+.|++|+||||++.++...
T Consensus 32 ~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 32 NLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChHHHHHHHHHH
Confidence 3567899999999999999999743
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=0.17 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..|+|+|.+|+||||+++.|-
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 479999999999999999774
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.91 E-value=0.17 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..|||+|..|+||||+++.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999774
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=86.47 E-value=0.23 Score=45.54 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=23.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
....+.|.+.|++|+|||+|+.++....+
T Consensus 39 ~~~~~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 39 ARIPKGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEecCCCCChhHHHHHHHHHcC
Confidence 33456799999999999999999975443
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.86 E-value=0.68 Score=42.04 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHh
Q 008294 92 NIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 92 ~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+.+.|++|+||||++++++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 3455699999999999999743
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.68 E-value=0.21 Score=44.70 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.+++.+.|++|+||||++..|...
T Consensus 35 ~~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 35 NMPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCchhhHHHHHHH
Confidence 3457899999999999999998743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.54 E-value=0.3 Score=45.66 Aligned_cols=26 Identities=19% Similarity=-0.009 Sum_probs=21.8
Q ss_pred CCCCeeEEEEEcCCCCchHHHHHHHH
Q 008294 86 PLKDYRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 86 ~~~~~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
..++..-|+|.|..|+|||||...|.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 34456789999999999999998875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=1.3 Score=41.75 Aligned_cols=28 Identities=18% Similarity=0.032 Sum_probs=22.5
Q ss_pred CCCeeEEEEEcCCCCchHHHHHHHHHhc
Q 008294 87 LKDYRNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 87 ~~~~~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
....-++.++|++|+|||.|+.+|....
T Consensus 49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 49 HKPVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCcchhHHHHHHHHhhc
Confidence 3344589999999999999999996443
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.79 E-value=0.31 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHh
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+.|+|.|..|+||||+++.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999998643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.64 E-value=0.33 Score=45.08 Aligned_cols=26 Identities=15% Similarity=0.094 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 88 KDYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 88 ~~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+..+.|+|.|..|.|||||+..++..
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.45 E-value=0.4 Score=44.21 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=25.1
Q ss_pred CCCCCeeEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 85 IPLKDYRNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 85 ~~~~~~~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
......+.|.+.|++|+|||+|++++....|
T Consensus 36 ~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 36 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3444567899999999999999999985544
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=0.27 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.+-|+|-|..|+||||++..|.
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 3568889999999999999885
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.11 E-value=0.24 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
..+++.+.|++|+||||++.+++..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.78 E-value=0.28 Score=43.32 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCchHHHHHHHH
Q 008294 91 RNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll 111 (571)
+=|+|-|..||||||+++.|.
T Consensus 3 kfIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999986
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.74 E-value=1.4 Score=41.48 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHH
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLF 112 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~ 112 (571)
..-++.++|++|+|||.|+..|..
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHH
Confidence 334788999999999999999963
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.28 E-value=0.31 Score=43.86 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhc
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
+-|+|=|..|+||||+++.|....
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 568999999999999999997543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=83.19 E-value=0.072 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHHHHhc
Q 008294 93 IGIMAHIDAGKTTTTERVLFYT 114 (571)
Q Consensus 93 I~ivG~~~~GKSTLi~~Ll~~~ 114 (571)
.+|+|+.|+|||||+++|....
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999997543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.48 E-value=0.4 Score=41.37 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
.+-|.|+|.+|+|||||+-.|+..
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 356899999999999999999854
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.33 E-value=0.26 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCchHHHHHHHH
Q 008294 90 YRNIGIMAHIDAGKTTTTERVL 111 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll 111 (571)
.-|+++||++|+|||++++.|.
T Consensus 43 k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHH
Confidence 3478899999999999999886
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.23 E-value=0.42 Score=46.30 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHhcCC
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFYTGR 116 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~~g~ 116 (571)
.+.+++.|++|+|||+|+.+|....|.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~ 180 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELCGG 180 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999876663
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.73 E-value=0.39 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHhcC
Q 008294 91 RNIGIMAHIDAGKTTTTERVLFYTG 115 (571)
Q Consensus 91 ~~I~ivG~~~~GKSTLi~~Ll~~~g 115 (571)
.||.++|++|+|||-|+.+|....+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC
Confidence 4999999999999999999975443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.38 E-value=5.4 Score=34.90 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCCchHHHHHHHHHh
Q 008294 89 DYRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 89 ~~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
+-..+.|.|.+|+|||+|.-.+++.
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999854
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.17 E-value=0.52 Score=40.77 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCchHHHHHHHHHh
Q 008294 90 YRNIGIMAHIDAGKTTTTERVLFY 113 (571)
Q Consensus 90 ~~~I~ivG~~~~GKSTLi~~Ll~~ 113 (571)
...+.|.|++|+|||+|+..++.+
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999744
|