Citrus Sinensis ID: 008328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
Protein Sequence
MLLLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Secondary Structure (PSIPRED)
ccEEcccccccccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccEcccccccccHHHHHHHcccHHHHHHHHcccHcHcccccHHHHHHHcccHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEcc
Coil and Loop (DISEMBL)
mlllkclkggverncftsyapLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKnrelpsirgnkgatpLCMAALLGHKEMIWYLYSvtkeedlkeEDRIELLVAVIDAGLYDVALDLIQhhpqlamardgngeTALHVLArkpsafasgsqlgfWRRCiysvpgmraildPKLMHLQALELVKRLWEQVLLLDdskigellrkpsRLLFTAVELGNVEFLMVLIQMYPNliwkvddhsrsMFHIAVVHRQEKIFNLIYELGAHKDLIASYkdennnnmlhlagklappdrlkidsGAALQLRRELHWFKEIEKVVqpsyreaknsegrtphilfsEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAftvpggnddstgrpiflHYKSFMVFAVSDALALFCSATSILMFLSIITSRyaeedfvhslpNRLIIGLATLFISIATMMAAFAATLFIVLGDdfvwiaipiatgacvpVSLFALLQFPLLSDMISHLYKYSIFtrrsnhlly
Flexible Loop (DISEMBL)
MLLLKClkggverncftsYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNrelpsirgnkgaTPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPsafasgsqlgfWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDskigellrkpSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLagklappdrLKIDSGAALQLRRELHWfkeiekvvqpsyreaknsegrtphilfseehRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKysiftrrsnhlly
Low Complexity Region (SEG)
MLLLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISiatmmaafaatlfiVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Disordered region (IsUnstruct)
**LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQ***************ILFS***RRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRR******
Disordered Region (DISOPRED)
MLLLK**KGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTP*********************TASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRR******
Disordered Region (DISEMBL)
MLLLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Disordered Region (DISPRO)
MLLLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRS***L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	570	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.524	0.506	0.256	2e-16
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.794	0.864	0.227	9e-12
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.728	0.780	0.215	4e-08
A5PMU4	1280	Ankyrin repeat and steril	yes	no	0.310	0.138	0.310	6e-08
Q92625	1134	Ankyrin repeat and SAM do	yes	no	0.310	0.156	0.305	2e-07
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.578	0.084	0.247	4e-07
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.578	0.083	0.247	7e-07
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.259	0.075	0.298	2e-06
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.259	0.033	0.298	3e-06
Q7Z6G8	1248	Ankyrin repeat and steril	no	no	0.277	0.126	0.287	3e-06

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 154/366 (42%), Gaps = 67/366 (18%)

Query: 252 SKIGELLR----KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ 307
           SK G LL          L  A   G+VE +  L+   P L  ++D   ++  H+AV  + 
Sbjct: 219 SKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQS 278

Query: 308 EKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK----------LAPPD----------R 347
            ++  L+ +       I    D++ N  LH+A +          L+ PD          +
Sbjct: 279 SEVVKLLLDADP---AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHK 335

Query: 348 LKIDSGAALQLRRELHWFKE--------------------------IEKVVQPSYREAKN 381
             +D    L L  E  + KE                          I+  V     + K 
Sbjct: 336 TALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKR 395

Query: 382 SEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGR 441
           +     +I  S+E R+L REG   + +  +S  VVA L ATV FAA FTVPGG D++ G 
Sbjct: 396 TNKNVHNI--SKELRKLHREG---INNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGS 449

Query: 442 PIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFI 501
            + +   SF +F + +ALALF S   +++ ++++      E  V  + N+L+  LA++  
Sbjct: 450 AVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMW-LASMCT 508

Query: 502 SIATMMAAFAATLFIVLGDDFVWIA--IPIATGACVPVSLFALLQFPLLSDMISHLYKYS 559
           S+     AF A+ +IV+G    W A  + +  G  +   L  +  + + S     + K  
Sbjct: 509 SV-----AFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKV 563

Query: 560 IFTRRS 565
              RRS
Sbjct: 564 KSARRS 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 121/533 (22%), Positives = 218/533 (40%), Gaps = 80/533 (15%)

Query: 50  SRNQDTALHIAAGARRTLFVQELVN----LMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
           +R  DT LH A    +T  + E++     +   E LA +N+ G TAL  AA  G T + +
Sbjct: 14  ARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVK 73

Query: 106 V-MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK-EEDRIELLVAVI 163
           + M + +  L   +   G     +AA  G+ +++  L     E     +  +   L    
Sbjct: 74  ILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAA 133

Query: 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR 223
             G  ++   L+     LA     NG+TALH  AR              ++ I    GM 
Sbjct: 134 SQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTV-------IVKKLIEKKAGMV 186

Query: 224 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM 283
             +D                               +K    L  AV+  N E + VL++ 
Sbjct: 187 TRVD-------------------------------KKGQTALHMAVKGQNTEIVDVLMEA 215

Query: 284 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA 343
             +LI   D+   +  HIAV   + +I   + +   + ++     +++    L +A K  
Sbjct: 216 DGSLINSADNKGNTPLHIAVRKNRAEIVQTVLK---YCEVSRVAVNKSGETALDIAEKTG 272

Query: 344 PPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFS--EEHRRLVRE 401
             + + +     +Q  R +   +++E     S R+ K +     H + +  E+  R  RE
Sbjct: 273 LHEIVPLLQKIGMQNARSIKPAEKVEP--SGSSRKLKETVSEIGHEVHTQLEQTGRTRRE 330

Query: 402 GE-----------KWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD---------STGR 441
            +           + + +  +S  +VA LIATV FAA F VPG   D         S G 
Sbjct: 331 IQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGE 390

Query: 442 PIFLHYKSFMVFAVSDALALFCS-ATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLF 500
                   F++F V D+ ALF S A  ++    ++  R A++  + ++ N+L+  +A + 
Sbjct: 391 ARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMM-AIINKLMW-MACIM 448

Query: 501 ISIATMMAAFAATLFIVLGDDFVWIAIPI-ATGACVPVSLFALLQFPLLSDMI 552
           IS+     AF +  F+V+G+    +A+ + A GA + VS    + + ++++ I
Sbjct: 449 ISV-----AFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWVIANRI 496

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 115/533 (21%), Positives = 211/533 (39%), Gaps = 118/533 (22%)

Query: 71  ELVNLMTP-----EDLALRNKVGNTALCFAAVSGVTKIAEVMVN-KNRELPSIRGNKGAT 124
           EL++  +P     E ++++N  G TA+  +A   +  I   ++   + E   IR      
Sbjct: 37  ELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMN 96

Query: 125 PLCMAALLGH----KEMIWYLYSVTKEEDLKE---------EDRIELLVAVIDAGLYDVA 171
              +AA  GH    KE++     + +  D            +D +E++ A++D       
Sbjct: 97  AFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDV------ 150

Query: 172 LDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLM 231
                  P  AM    NG+T+LH   R                  Y +            
Sbjct: 151 ------DPSCAMIVRKNGKTSLHTAGR------------------YGL------------ 174

Query: 232 HLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKV 291
               L +VK L E+    D + +G   +K    L  AV+  ++E +  ++Q    ++ + 
Sbjct: 175 ----LRIVKALIEK----DAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNER 226

Query: 292 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD----- 346
           D    +  HIA    + +I +L+    A   +  +  +      + LA KL   +     
Sbjct: 227 DRKGNTALHIATRKARPQITSLLLTFTA---IEVNAINNQKETAMDLADKLQYSESALEI 283

Query: 347 -RLKIDSGA-----------ALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEE 394
               +++GA           A  L+R +    +I+  VQ    + + +  R   I  ++E
Sbjct: 284 NEALVEAGAKHGRFIGREDEARALKRAV---SDIKHEVQSQLLQNEKTNRRVSGI--AKE 338

Query: 395 HRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPG---GNDDSTGRPIFLHYKSFM 451
            R+L RE    +++T +S  VVA L A++ F A F +PG         G+        F 
Sbjct: 339 LRKLHREA---VQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFR 395

Query: 452 VFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFA 511
           VF + +A +LF S   +++ ++++      +  V S+ N+L      ++ + A    AF 
Sbjct: 396 VFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL------MWAACACTFGAFL 449

Query: 512 ATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRR 564
           A  F V+G    W+AI I            LL  P+L   ++ +  Y +F +R
Sbjct: 450 AIAFAVVGKGNSWMAITI-----------TLLGAPILVGTLASMC-YFVFRQR 490

Arabidopsis thaliana (taxid: 3702)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 59.7 bits (143), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 13  RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISR-NQDTALHIAAGARRTLFVQE 71
           + CF    PLHLAA +GD D  +   +  P    V      ++TALH AA    +  V+ 
Sbjct: 90  KGCF----PLHLAAWRGDVDIVQILIHHGPSHSRVNEQNLEKETALHCAAQYGHSEVVRV 145

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
           L+  +T  D ++RN  G T L  AA+ G  ++  +++  +  L S    K  TPL +AA 
Sbjct: 146 LLQELT--DPSMRNSRGETPLDLAALYGRLQVVRMLLTAHPNLMSCNTRK-HTPLHLAAR 202

Query: 132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ---HHPQLAMARDGN 188
            GH   +  L     E D+    + E   A+ +A L+   +D++Q        A  RD  
Sbjct: 203 NGHYATVQVLL----EADMDVNTQTEKGSALHEAALFG-KMDVVQLLLDSGIDANIRDCQ 257

Query: 189 GETALHVLARKPS 201
           G TAL +L   PS
Sbjct: 258 GRTALDILREHPS 270

Danio rerio (taxid: 7955)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 16/193 (8%)

Query: 13  RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRN-QDTALHIAAGARRTLFVQE 71
           + C+    PLHLAA KGD    R   +  P    V    N  +TALH AA    T  V+ 
Sbjct: 112 KGCY----PLHLAAWKGDAQIVRLLIHQGPSHTRVNEQNNDNETALHCAAQYGHTEVVKV 167

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
           L+  +T  D  +RN    T L  AA+ G  ++ ++++N +  L S    K  TPL +AA 
Sbjct: 168 LLEELT--DPTMRNNKFETPLDLAALYGRLEVVKMLLNAHPNLLSCN-TKKHTPLHLAAR 224

Query: 132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY---DVALDLIQHHPQLAMARDGN 188
            GHK ++  L     + + +     E+  A+ +A L+   DV   L+     + + +D +
Sbjct: 225 NGHKAVVQVLLDAGMDSNYQ----TEMGSALHEAALFGKTDVVQILLAAGTDVNI-KDNH 279

Query: 189 GETALHVLARKPS 201
           G TAL  +   PS
Sbjct: 280 GLTALDTVRELPS 292

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 21/351 (5%)

Query: 11  VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 70
           V R   + + PLH+AA  G+ + A     LN  A     +RN  T LH+A+    T  V+
Sbjct: 226 VNRTTESGFTPLHIAAHYGNVNVAT--LLLNRGAAVDFTARNGITPLHVASKRGNTNMVK 283

Query: 71  ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130
            L++     D   R+  G T L  AA SG  ++ E+++ +   L + R   G +PL MAA
Sbjct: 284 LLLDRGGQIDAKTRD--GLTPLHCAARSGHDQVVELLLERKAPLLA-RTKNGLSPLHMAA 340

Query: 131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE 190
              H E + +L       D    D +  L      G Y V   L+        AR  NG 
Sbjct: 341 QGDHVECVKHLLQYKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRAN-PNARALNGF 399

Query: 191 TALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD 250
           T LH+  +K       +++      +     ++AI +  L  +     +  L   +LLL 
Sbjct: 400 TPLHIACKK-------NRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQ 452

Query: 251 DSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEK 309
           +    ++   +    L  A   G VE +  L++    L+       ++  HIA    + +
Sbjct: 453 NGASPDVTNIRGETALHMAARAGQVEVVRCLLR-NGALVDARAREEQTPLHIASRLGKTE 511

Query: 310 IFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQL 358
           I  L+ +  AH D   +    N    LH++ +    D   + +++GAA  L
Sbjct: 512 IVQLLLQHMAHPDAATT----NGYTPLHISAREGQVDVASVLLEAGAAHSL 558

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 21/351 (5%)

Query: 11  VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 70
           V R   + + PLH+AA  G+ + A     LN  A     +RN  T LH+A+    T  V+
Sbjct: 226 VNRTTESGFTPLHIAAHYGNVNVAT--LLLNRGAAVDFTARNGITPLHVASKRGNTNMVK 283

Query: 71  ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130
            L++     D   R+  G T L  AA SG  ++ E+++ +   L + R   G +PL MAA
Sbjct: 284 LLLDRGGQIDAKTRD--GLTPLHCAARSGHDQVVELLLERGAPLLA-RTKNGLSPLHMAA 340

Query: 131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE 190
              H E + +L       D    D +  L      G Y V   L+        AR  NG 
Sbjct: 341 QGDHVECVKHLLQHKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLDKRAN-PNARALNGF 399

Query: 191 TALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD 250
           T LH+  +K       +++      +     ++AI +  L  +     +  L   +LLL 
Sbjct: 400 TPLHIACKK-------NRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQ 452

Query: 251 DSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEK 309
           +    ++   +    L  A   G VE +  L++    L+       ++  HIA    + +
Sbjct: 453 NGASPDVTNIRGETALHMAARAGQVEVVRCLLR-NGALVDARAREEQTPLHIASRLGKTE 511

Query: 310 IFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQL 358
           I  L+ +  AH D   +    N    LH++ +    D   + +++GAA  L
Sbjct: 512 IVQLLLQHMAHPDAATT----NGYTPLHISAREGQVDVASVLLEAGAAHSL 558

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 26/174 (14%)

Query: 32  DFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA 91
           D+ +N  ++N   +C   ++N   ALH+A+       V EL+      D A   K GNTA
Sbjct: 42  DYIKNGVDVN---IC---NQNGLNALHLASKEGHVEVVSELLQREANVDAA--TKKGNTA 93

Query: 92  LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK 151
           L  A+++G  ++ +V+V     + + +   G TPL MAA   H E++ +L      + L 
Sbjct: 94  LHIASLAGQAEVVKVLVTNGANV-NAQSQNGFTPLYMAAQENHLEVVRFLLDNGASQSLA 152

Query: 152 EEDRIELLVAVIDAGLYDVALDLIQHHPQ---LAMARDGNGET---ALHVLARK 199
            ED           G   +A+ L Q H Q   L +  D  G+    ALH+ ARK
Sbjct: 153 TED-----------GFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARK 195

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 26/174 (14%)

Query: 32  DFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA 91
           D+ +N  ++N   +C   ++N   ALH+A+       V EL+      D A   K GNTA
Sbjct: 59  DYIKNGVDIN---IC---NQNGLNALHLASKEGHVEVVSELLQREANVDAA--TKKGNTA 110

Query: 92  LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK 151
           L  A+++G  ++ +V+V     + + +   G TPL MAA   H E++ +L      + L 
Sbjct: 111 LHIASLAGQAEVVKVLVTNGANV-NAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLA 169

Query: 152 EEDRIELLVAVIDAGLYDVALDLIQHHPQ---LAMARDGNGE---TALHVLARK 199
            ED           G   +A+ L Q H Q   L +  D  G+    ALH+ ARK
Sbjct: 170 TED-----------GFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARK 212

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 23/181 (12%)

Query: 19  YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ-DTALHIAAGARRTLFVQELVNLMT 77
           Y P+HLAA KGD +  +   +  P    V    N+ +TALH AA    +  V  L+  +T
Sbjct: 93  YFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELT 152

Query: 78  PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM 137
             D  +RN    T L  AA+ G  ++ +++++ +  L S    K  TPL +AA  GHK +
Sbjct: 153 --DPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRK-HTPLHLAARNGHKAV 209

Query: 138 IWYLYSVTKEEDLKEE--------------DRIELLVAV-IDAGLYD----VALDLIQHH 178
           +  L     +   + E              D + +L+   IDA + D      LD+++ H
Sbjct: 210 VQVLLEAGMDVSCQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEH 269

Query: 179 P 179
           P
Sbjct: 270 P 270

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.977	0.705	0.729	0.0
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.989	0.332	0.663	0.0
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.996	0.745	0.682	0.0
297737987	1855	unnamed protein product [Vitis vinifera]	0.931	0.286	0.686	0.0
224136692	743	predicted protein [Populus trichocarpa]	0.989	0.759	0.641	0.0
356532648	739	PREDICTED: uncharacterized protein LOC10	0.956	0.737	0.609	0.0
297740805	702	unnamed protein product [Vitis vinifera]	0.903	0.733	0.600	0.0
147860696	891	hypothetical protein VITISV_011174 [Viti	0.952	0.609	0.546	1e-174
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.887	0.898	0.532	1e-164
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.964	0.913	0.542	1e-162

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/558 (72%), Positives = 473/558 (84%), Gaps = 1/558 (0%)

Query: 7   LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT 66
           + G +  N   +Y  L LAAL GDW  A+ F   NP+AV  RI+R  +TALHIAAGAR T
Sbjct: 163 ISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHT 222

Query: 67  LFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 126
            FV+ELV LM P+DLAL+NKVGNTALCFAA SG+T+IAEVMVNKNRELP IRG+KG TPL
Sbjct: 223 RFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPL 282

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 186
            MAAL+GHK+M+ YLYSVT+E++L +EDRI LLVA I A L+DVAL ++   P+LAMARD
Sbjct: 283 YMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARD 342

Query: 187 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV 246
           GNG+TALHVLARKP AF SGSQLG W RCIYS PG +++ D KLMH+QALELV++LW+++
Sbjct: 343 GNGDTALHVLARKPLAFYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDKI 402

Query: 247 LLLD-DSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH 305
           L LD D KIGEL+R PSRLLFTA ELG VEF+ VLI+ YP+LIWKV+D S+++FH+AV H
Sbjct: 403 LSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAH 462

Query: 306 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWF 365
           RQEKIFNLIYE+GAHKD IA+YKDE NNNMLHLAGKLAP +RLKIDSGAA QL+RELHWF
Sbjct: 463 RQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWF 522

Query: 366 KEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMF 425
           KE+EK++QPSY E KN +GRTP ILF+EEH+ LVREGEKWMKDTASSCMVVATLIATVMF
Sbjct: 523 KEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMF 582

Query: 426 AAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFV 485
           AAAF+VPGGNDD TGRPIFL  KSF+VFA+SDALALF SATSIL+FLSI+TSRYAEEDF+
Sbjct: 583 AAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFL 642

Query: 486 HSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQF 545
            SLPNRLIIGLATLFIS+ATMM AF ATLFIVLG + VW+A P+A  ACVPV+LF LL+F
Sbjct: 643 ESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKF 702

Query: 546 PLLSDMISHLYKYSIFTR 563
           PL  DMISH Y+ SI  R
Sbjct: 703 PLFIDMISHRYRSSIIFR 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/604 (66%), Positives = 475/604 (78%), Gaps = 40/604 (6%)

Query: 6   CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR 65
            + G +  N   +Y  L LAAL GDW  A+ F   NP+AV  RI+R  +TALHIAAGAR 
Sbjct: 162 AISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARH 221

Query: 66  TLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
           T FV+ELV LM P+DLAL+NKVGNTALCFAA SG+T+IAEVMVNKNRELP IRG+KG TP
Sbjct: 222 TRFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTP 281

Query: 126 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 185
           L MAAL+GHK+M+ YLYSVT+E++L +EDRI LLVA I A L+DVAL ++   P+LAMAR
Sbjct: 282 LYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMAR 341

Query: 186 DGNGETALHVLARKPSAFASG------------SQLGFWRRCI----------------- 216
           DGNG+TALHVLARKP AF SG            +  G  R C+                 
Sbjct: 342 DGNGDTALHVLARKPLAFYSGRARQRGVFLLYSATKGEVRLCLNVIRSLCSASTHVFYXF 401

Query: 217 ----------YSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD-DSKIGELLRKPSRLL 265
                     ++VPG +++ D KLMH+QALELV++LW+++L LD D KIGEL+R PSRLL
Sbjct: 402 NSQTYFGLLPHAVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLL 461

Query: 266 FTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIA 325
           FTA ELG VEF+ VLI+ YP+LIWKV+D S+++FH+AV HRQEKIFNLIYE+GAHKD IA
Sbjct: 462 FTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIA 521

Query: 326 SYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGR 385
           +YKDE NNNMLHLAGKLAP +RLKIDSGAA QL+RELHWFKE+EK++QPSY E KN +GR
Sbjct: 522 AYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGR 581

Query: 386 TPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFL 445
           TP ILF+EEH+ LVREGEKWMKDTASSCMVVATLIATVMFAAAF+VPGGNDD TGRPIFL
Sbjct: 582 TPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFL 641

Query: 446 HYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIAT 505
             KSF+VFA+SDALALF SATSIL+FLSI+TSRYAEEDF+ SLPNRLIIGLATLFIS+AT
Sbjct: 642 TKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVAT 701

Query: 506 MMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRS 565
           MM AF ATLFIVLG + VW+A P+A  ACVPV+LF LL+FPL  DMISH Y+ SI  R +
Sbjct: 702 MMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFRPT 761

Query: 566 NHLL 569
           ++ +
Sbjct: 762 HNFI 765

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/574 (68%), Positives = 459/574 (79%), Gaps = 6/574 (1%)

Query: 3   LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG 62
           L   +  G   + F +YAPL+LAAL GDWD A   F  + +AV  RI+R Q+T LHIAAG
Sbjct: 189 LAAAVHSGEVSSGFRTYAPLYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAG 248

Query: 63  ARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG 122
           AR   FV+ LV +MTP DLALRNKVGNTALCFAAVSGVTKIAEVMVNKN  LP IRG++G
Sbjct: 249 ARHLTFVENLVRMMTPADLALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGSEG 308

Query: 123 ATPLCMAALLGHKEMIWYLYS------VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 176
           ATPL MA LLGH+EM+WYLY+      +T    L +ED   LL+A I + L+DVAL ++Q
Sbjct: 309 ATPLHMATLLGHREMVWYLYNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVALKIVQ 368

Query: 177 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL 236
            HP++A AR  NGETALH+LARKPSA+ SGSQLGF +RCIY+ P ++ + D KLMH+QAL
Sbjct: 369 KHPKIATARGRNGETALHILARKPSAYQSGSQLGFLQRCIYAFPFIKVVYDQKLMHIQAL 428

Query: 237 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR 296
           ELVK LW +VLL+++ ++GEL+R PSRLLFTA ELG VEFL+ LI  YP+LIWKVD  SR
Sbjct: 429 ELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSR 488

Query: 297 SMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAAL 356
           S+FHIAVVHRQEK+FNLI+E+GA KDLIASY+DENNNNMLHLAGKLAP DRLK DSGAAL
Sbjct: 489 SIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAAL 548

Query: 357 QLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVV 416
           QLRRELHWFKE+EK+VQP YRE +NSEG+TP  LF EEH+ LVREGEKWMKDTA+SCM+V
Sbjct: 549 QLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLV 608

Query: 417 ATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIIT 476
           ATLIATVMFAA FTVPGG++ +TG PIFL  +SF VFAVSDAL+   SA SILMFLSI+T
Sbjct: 609 ATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFLSILT 668

Query: 477 SRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVP 536
           SRYAEEDF+HSLPNRL IGL TLFIS+ATMM AF ATLF+VLG       IPIA  AC+P
Sbjct: 669 SRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLGHGLHQAKIPIALVACIP 728

Query: 537 VSLFALLQFPLLSDMISHLYKYSIFTRRSNHLLY 570
           VSLFALLQFPL +DM+S  Y   +F   S HLL+
Sbjct: 729 VSLFALLQFPLFADMVSCTYGSRMFFGPSRHLLH 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/558 (68%), Positives = 451/558 (80%), Gaps = 27/558 (4%)

Query: 7   LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT 66
           + G +  N   +Y  L LAAL GDW  A+ F   NP+AV  RI+R  +TALHIAAGAR T
Sbjct: 163 ISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHT 222

Query: 67  LFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 126
            FV+ELV LM P+DLAL+NKVGNTALCFAA SG+T+IAEVMVNKNRELP IRG+KG TPL
Sbjct: 223 RFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPL 282

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 186
            MAAL+GHK+M+ YLYSVT+E++L +EDRI LLVA I A L+DVAL ++   P+LAMARD
Sbjct: 283 YMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARD 342

Query: 187 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV 246
           G    ++HV                       +PG +++ D KLMH+QALELV++LW+++
Sbjct: 343 G---ASIHV-----------------------IPGFKSVYDKKLMHIQALELVQQLWDKI 376

Query: 247 LLLD-DSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH 305
           L LD D KIGEL+R PSRLLFTA ELG VEF+ VLI+ YP+LIWKV+D S+++FH+AV H
Sbjct: 377 LSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAH 436

Query: 306 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWF 365
           RQEKIFNLIYE+GAHKD IA+YKDE NNNMLHLAGKLAP +RLKIDSGAA QL+RELHWF
Sbjct: 437 RQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWF 496

Query: 366 KEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMF 425
           KE+EK++QPSY E KN +GRTP ILF+EEH+ LVREGEKWMKDTASSCMVVATLIATVMF
Sbjct: 497 KEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMF 556

Query: 426 AAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFV 485
           AAAF+VPGGNDD TGRPIFL  KSF+VFA+SDALALF SATSIL+FLSI+TSRYAEEDF+
Sbjct: 557 AAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFL 616

Query: 486 HSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQF 545
            SLPNRLIIGLATLFIS+ATMM AF ATLFIVLG + VW+A P+A  ACVPV+LF LL+F
Sbjct: 617 ESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKF 676

Query: 546 PLLSDMISHLYKYSIFTR 563
           PL  DMISH Y+ SI  R
Sbjct: 677 PLFIDMISHRYRSSIIFR 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/564 (64%), Positives = 434/564 (76%)

Query: 7   LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT 66
           +KG       T YAPL+ AA+KGDW+ A  FF  +P A+ VRI++  DT LHIAAGA+ T
Sbjct: 180 VKGNRSTTGLTLYAPLYQAAMKGDWEKADEFFKSHPGAINVRITKEMDTVLHIAAGAKHT 239

Query: 67  LFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 126
            FV+E+V  MT  DL LRNK  NTALC+AA SGVTKIAE+MV+KNR LP +R N+G TPL
Sbjct: 240 KFVEEVVKSMTGTDLTLRNKYNNTALCYAAASGVTKIAEMMVSKNRNLPMMRNNRGVTPL 299

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 186
            +AAL GHK+M+WYLYSVT +E L  +D I LL+A I   L+DVAL +IQH P+LA+ RD
Sbjct: 300 YIAALFGHKDMVWYLYSVTSDEYLTRDDYIGLLIATISTDLFDVALSIIQHQPELAIQRD 359

Query: 187 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV 246
            NGETALHVLARK SAFAS S LGFW R IY  PG++A+ D KLMH Q LELVK  WEQV
Sbjct: 360 LNGETALHVLARKSSAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWEQV 419

Query: 247 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR 306
           LLLDD +I ELL  PS+ LF A E G VEF+  LI+ YP+LIWKV++ SRS+FHIAV HR
Sbjct: 420 LLLDDCQIAELLASPSQPLFVAAEFGIVEFITALIRSYPDLIWKVNEQSRSIFHIAVAHR 479

Query: 307 QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFK 366
           QEKIF+LI ++GAHKD+I +YKD NN N+LHLAG +AP D+L + SGAALQ++REL WFK
Sbjct: 480 QEKIFSLINDIGAHKDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQRELLWFK 539

Query: 367 EIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFA 426
           E+EK VQPS +E ++  GRTP +LF+EEHR LV+EGEKWMK+TASSCM++ATLI TVMFA
Sbjct: 540 EVEKNVQPSLKEMRDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVMFA 599

Query: 427 AAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVH 486
           A FTVPGGND+S G P+ L   SF+VFAV+DA ALF S TSILMFLSI+TSRYAEEDFV 
Sbjct: 600 AIFTVPGGNDNSKGTPLVLASTSFIVFAVADAFALFSSVTSILMFLSILTSRYAEEDFVE 659

Query: 487 SLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFP 546
           SLP RL++GLATLF SIA M+ AFAAT  IVL     WI +PI+ G+ VPV+LFA LQFP
Sbjct: 660 SLPKRLVVGLATLFCSIAAMLVAFAATFCIVLDHRLAWIVVPISLGSSVPVTLFAFLQFP 719

Query: 547 LLSDMISHLYKYSIFTRRSNHLLY 570
           L  DMI   Y   IF R+S  +LY
Sbjct: 720 LFVDMIHSSYGAGIFARKSTDMLY 743

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/546 (60%), Positives = 419/546 (76%), Gaps = 1/546 (0%)

Query: 19  YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 78
           Y PL+ A+LKGDW+ A  F NL+P A    ISR  +TALHI+AGARRT FV+ELV  M  
Sbjct: 194 YLPLYRASLKGDWEKANEFLNLHPGAENAMISRGWETALHISAGARRTKFVEELVKRMRT 253

Query: 79  EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
            DL ++NK  NTALCFAA SGVTKIA++MV++NR LP IRG++G TPL +A LLG ++M+
Sbjct: 254 TDLEIQNKDNNTALCFAAASGVTKIAKLMVDRNRNLPVIRGSEGVTPLYIATLLGQRDMV 313

Query: 139 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 198
           WYLYSVT  E LK ED   LL+A I   LYD AL +++  PQLA     NGETALHVLA+
Sbjct: 314 WYLYSVTNHEILKTEDYFSLLIAAISTDLYDFALHVLECQPQLATYHGLNGETALHVLAK 373

Query: 199 KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL 258
           KPS+F SG QLG W RCIY +PG  A+   K ++ QAL+LV+RLWE ++  D+ + G+L+
Sbjct: 374 KPSSFTSGIQLGIWERCIYPLPGFEAVQKKKTLNAQALKLVQRLWELIVSSDEIQHGDLI 433

Query: 259 RKP-SRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL 317
           + P SR LF A E G  E ++ L+  YP+L+WKVD  +RS+FHIA++HRQEKIFNLIY++
Sbjct: 434 KSPLSRPLFIAAESGIPEIVIELLYSYPDLLWKVDGQNRSLFHIAIMHRQEKIFNLIYDI 493

Query: 318 GAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYR 377
           GAHKDLI SY+D NN+N+LHLAGKLAP ++L + SGAALQ++REL WFKE+EK++QP ++
Sbjct: 494 GAHKDLITSYRDNNNHNILHLAGKLAPSEQLHVVSGAALQMQRELLWFKEVEKIIQPLFK 553

Query: 378 EAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD 437
           E K+S+GRTP +LF+EEH+ L +EGEKW+K+TASSCM+VATLI TVMFAA FTVPGGN++
Sbjct: 554 EIKDSQGRTPQMLFTEEHKELAKEGEKWLKNTASSCMLVATLITTVMFAAIFTVPGGNNN 613

Query: 438 STGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLA 497
           + G PIF+H  SF VFA+SDALALF S  S+LMFLSI+TSRYA+EDF+ SLP RL +G+A
Sbjct: 614 NNGYPIFMHTTSFKVFALSDALALFSSVISVLMFLSILTSRYAQEDFLVSLPRRLSVGIA 673

Query: 498 TLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYK 557
           TLF SI TM+ AF AT FIVLG    WI IP    AC+P  LFALLQFPLL D IS  Y 
Sbjct: 674 TLFFSIITMLIAFGATFFIVLGHQLAWIVIPTTLVACIPAILFALLQFPLLVDTISCTYG 733

Query: 558 YSIFTR 563
             +F+R
Sbjct: 734 AGVFSR 739

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740805|emb|CBI30987.3| unnamed protein product [Vitis vinifera]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/583 (60%), Positives = 413/583 (70%), Gaps = 68/583 (11%)

Query: 3   LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG 62
           L   +  G   + F +YAPL+LAAL GDWD A   F  + +AV  RI+R Q+T LHIAAG
Sbjct: 146 LAAAVHSGEVSSGFRTYAPLYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAG 205

Query: 63  ARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG 122
           AR   FV+ LV +MTP DLALRNKVGNTAL                              
Sbjct: 206 ARHLTFVENLVRMMTPADLALRNKVGNTAL------------------------------ 235

Query: 123 ATPLCMAALLGHKEMIWYLYSVTK--EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ 180
               C AA+ G          VTK  E  + + +R+ L+         +VAL ++Q HP+
Sbjct: 236 ----CFAAVSG----------VTKIAEVMVNKNNRLPLIRG-------NVALKIVQKHPK 274

Query: 181 LAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYS---------------VPGMRAI 225
           +A AR  NGETALH+LARKPSA+ SGSQLGF +RCIY+               VP ++ +
Sbjct: 275 IATARGRNGETALHILARKPSAYQSGSQLGFLQRCIYACLHVELSGNSSVIHKVPFIKVV 334

Query: 226 LDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYP 285
            D KLMH+QALELVK LW +VLL+++ ++GEL+R PSRLLFTA ELG VEFL+ LI  YP
Sbjct: 335 YDQKLMHIQALELVKCLWSEVLLMNELQVGELIRTPSRLLFTAAELGIVEFLIELIHAYP 394

Query: 286 NLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP 345
           +LIWKVD  SRS+FHIAVVHRQEK+FNLI+E+GA KDLIASY+DENNNNMLHLAGKLAP 
Sbjct: 395 DLIWKVDTQSRSIFHIAVVHRQEKVFNLIHEIGALKDLIASYRDENNNNMLHLAGKLAPS 454

Query: 346 DRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKW 405
           DRLK DSGAALQLRRELHWFKE+EK+VQP YRE +NSEG+TP  LF EEH+ LVREGEKW
Sbjct: 455 DRLKTDSGAALQLRRELHWFKEVEKIVQPLYREIRNSEGKTPQTLFMEEHKVLVREGEKW 514

Query: 406 MKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSA 465
           MKDTA+SCM+VATLIATVMFAA FTVPGG++ +TG PIFL  +SF VFAVSDAL+   SA
Sbjct: 515 MKDTAASCMLVATLIATVMFAAFFTVPGGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSA 574

Query: 466 TSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWI 525
            SILMFLSI+TSRYAEEDF+HSLPNRL IGL TLFIS+ATMM AF ATLF+VLG      
Sbjct: 575 ASILMFLSILTSRYAEEDFLHSLPNRLTIGLGTLFISVATMMIAFCATLFLVLGHGLHQA 634

Query: 526 AIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHL 568
            IPIA  AC+PVSLFALLQFPL +DM+S  Y   +F   S H 
Sbjct: 635 KIPIALVACIPVSLFALLQFPLFADMVSCTYGSRMFFGPSRHF 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 309/565 (54%), Positives = 394/565 (69%), Gaps = 22/565 (3%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
           PL+ AALKGDW+ A+  F ++P AV VRI+RN DT LHIAA A+RT FV+E+V LM P D
Sbjct: 331 PLYQAALKGDWETAKGIFEIHPTAVRVRITRNLDTVLHIAAAAKRTHFVEEVVGLMDPND 390

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
           L L+N+  NTA CFAA +G  +IAEVMV KN  LP IRGN+   PL MAALLGH EM+WY
Sbjct: 391 LELQNENSNTAFCFAAAAGTVRIAEVMVKKNDHLPMIRGNQQMMPLHMAALLGHSEMVWY 450

Query: 141 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200
           LY+ T  +DLK+ED I +L   I   LY+VAL +++ HP+LA  RDGN ETALH+LARKP
Sbjct: 451 LYNKTNHQDLKDEDWIGILNTCISTDLYEVALAILESHPKLATIRDGNYETALHLLARKP 510

Query: 201 SAFASGSQLGFWRRCIYS----------------VPGMRAILDPKLMHLQALELVKRLWE 244
           SAF+  S++G W   I                  +P    + + +    + L        
Sbjct: 511 SAFSGESRIGIWTTFINPRSPLQVSTVVIIFLMVIPSNNFLFNSQFQS-KPLNSSNAFGS 569

Query: 245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV 304
           ++    DSKI +L+R P RL+F A +LGN  FL  L+  YP+LIW+V   +RS+FHIA +
Sbjct: 570 RLYNYLDSKIADLIRDPYRLVFVAAKLGNTIFLTELLHSYPDLIWRVXSQTRSIFHIAAL 629

Query: 305 HRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHW 364
           HRQ++IFNLIYE+G+ KD+I +Y+DEN NNMLHL GKLA P  L I SGAALQ++REL W
Sbjct: 630 HRQDRIFNLIYEIGSIKDMIMTYRDENGNNMLHLVGKLAHPSELNIISGAALQMQRELLW 689

Query: 365 FKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVM 424
           FKE+EK++QP+YRE KN +G+TP +LF+EEHR L+++GEKWM++TA+  M+VATLIATV+
Sbjct: 690 FKEVEKLMQPTYREKKNRQGKTPWVLFTEEHRDLMKDGEKWMRETAAQSMLVATLIATVV 749

Query: 425 FAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDF 484
           F+AAFTVPGG+   T  PI L     MVFAVSD LALF S+TSILMFLSI+TSRYAE+DF
Sbjct: 750 FSAAFTVPGGHSQQTDTPILL-----MVFAVSDGLALFTSSTSILMFLSILTSRYAEQDF 804

Query: 485 VHSLPNRLIIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQ 544
           +HSLP+RL+ GL  LF+SI TMM  F  T FIV    F W+ I IA  A  PVSLFA LQ
Sbjct: 805 LHSLPSRLMFGLTALFVSIITMMVTFTITFFIVYHHGFAWVPILIALFATGPVSLFASLQ 864

Query: 545 FPLLSDMISHLYKYSIFTRRSNHLL 569
           +PLL+D+I+  Y          H+ 
Sbjct: 865 YPLLADVINSTYGSRFLFEPRKHMF 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/550 (53%), Positives = 371/550 (67%), Gaps = 44/550 (8%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
           PL+ AA+KGDW  A   F + P AV + I++ +DT LHIAA A+   FV+E+V +M P+D
Sbjct: 58  PLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVEEMVKMMEPKD 117

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
           L L+NK  NTALCFAA SG+ +IAEVMV KN  LP I+G  G  PL MAALLGH EM+ Y
Sbjct: 118 LELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAALLGHSEMVRY 177

Query: 141 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200
           LY+ T  E L   D + LL   I   LYDVALD++ HHP LA+ RD N ETALH+LARKP
Sbjct: 178 LYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDENDETALHLLARKP 237

Query: 201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 260
           SAF+ G QL  W   I                                            
Sbjct: 238 SAFSGGDQLHMWNTFI-------------------------------------------- 253

Query: 261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 320
            S LL  A ELGN  FL  L+  YP+LIW+ D+ +R++FHIAV+HR+E IFNLIYE+G+ 
Sbjct: 254 TSPLLLVAAELGNTVFLTELVGSYPDLIWEADNDNRTIFHIAVLHRRESIFNLIYEIGSM 313

Query: 321 KDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 380
           KDLI  YKD+N+NNMLHLAG+ AP  +  I SGAALQ++REL WFKE+EK++ P+YRE K
Sbjct: 314 KDLIVPYKDDNDNNMLHLAGRKAPLPQRNIVSGAALQMQRELLWFKEVEKIMLPTYRERK 373

Query: 381 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTG 440
           N +G+TP  LF++EH+ L+++GEKWM+ TA+  M+VATLIATV+FAAAFTVPGG++  TG
Sbjct: 374 NKDGKTPRDLFTKEHKNLMKDGEKWMRGTAAQSMLVATLIATVVFAAAFTVPGGSNQDTG 433

Query: 441 RPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLF 500
            PI L  KSFM+FAVSDA+ALF S+TSIL+FLSI+TSRYAE+DF+ SLP+RL+ GL TLF
Sbjct: 434 IPILLRKKSFMIFAVSDAIALFSSSTSILVFLSILTSRYAEDDFLESLPSRLMFGLITLF 493

Query: 501 ISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSI 560
           +SI +MM  F  T F+V G  F W  + IA  ACVPV+L+  LQ+PLL+D+    Y    
Sbjct: 494 VSIISMMVTFTITFFLVFGHGFAWAPMLIAVSACVPVTLYFSLQYPLLADIFRSTYGSRF 553

Query: 561 FTRRSNHLLY 570
             R S  +LY
Sbjct: 554 LFRPSKRMLY 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/551 (54%), Positives = 385/551 (69%), Gaps = 1/551 (0%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
           PL+ AA+KGDW  A+  F + P AV   I+   DT LHIAA A+   FV+E+V +M PED
Sbjct: 52  PLYRAAMKGDWKTAKGIFEMFPAAVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPED 111

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
           L L+N+  NTA  FAA +G+  IA+ MV KN  LP IR     TPL +AALLGH EM+WY
Sbjct: 112 LELKNQYSNTAFWFAAAAGIVGIAKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVWY 171

Query: 141 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200
           LY+ T  E L   D ++LL A I   LYDVALD+  HHP LA+ RDGNGETALH+LARKP
Sbjct: 172 LYNKTDHEQLTVSDWVKLLNACISTDLYDVALDVSSHHPTLAVERDGNGETALHLLARKP 231

Query: 201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 260
           SAF+ G QL  W   I S+   R      L   ++L+LVK LW+QV++   S+I +L+R 
Sbjct: 232 SAFSGGDQLHIWNTVINSISCKRVEDKKILRQNKSLKLVKHLWQQVIVQPHSEILDLIRS 291

Query: 261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 320
           PS LL  A ELGN  FL  LI +YP+LIW+VDDH+RS+FHIAV+HRQE IFNLIYE+G+ 
Sbjct: 292 PSPLLLVAAELGNTVFLTELIAIYPDLIWEVDDHNRSIFHIAVLHRQENIFNLIYEIGSM 351

Query: 321 KDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 380
           KDLI   KDEN+NN+LHLAG+LAPP +  I  GAALQ++REL WF+E+EK+V PS+RE K
Sbjct: 352 KDLIVPNKDENDNNILHLAGRLAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRERK 411

Query: 381 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTG 440
           N +G TP  LF++EH+ L++EGEKWM+ TA+  M+VATLIATV+FAAA TVPGG++  TG
Sbjct: 412 NRDGETPWDLFTKEHKDLMKEGEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTG 471

Query: 441 RPIFLHYKSFMVFAVSDALALFCSATSILMFLSII-TSRYAEEDFVHSLPNRLIIGLATL 499
            P F+  +   +FAVSDA+ALF S TSIL+FLSI+ TSRYA++DF+  LP+RL+ GL TL
Sbjct: 472 IPXFVEKEILHIFAVSDAIALFTSLTSILVFLSIVLTSRYADDDFLELLPSRLMFGLFTL 531

Query: 500 FISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYS 559
           FISI +MM  F AT F++      W  I +A  A + V+L+  +Q  L + +I   Y   
Sbjct: 532 FISIISMMVTFTATFFLLFSHGVTWAPILVAVFAFLLVTLYFSMQCRLWAHIIRATYCSR 591

Query: 560 IFTRRSNHLLY 570
           +  R   H+LY
Sbjct: 592 LIFRPRKHMLY 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	570
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.596	0.508	0.440	9e-90
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.968	0.883	0.382	4.7e-87
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.605	0.572	0.396	8.6e-73
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.587	0.965	0.446	4.1e-72
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.817	0.811	0.361	4.9e-69
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.257	0.521	0.455	9.2e-29
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.356	0.299	0.290	2e-14
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.843	0.815	0.244	1e-13
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.731	0.686	0.243	3e-13
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.742	0.674	0.249	3.1e-13

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 152/345 (44%), Positives = 213/345 (61%)

Query:   221 GMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL 280
             G+  +   K+MHLQA +L+  + E+ L L   +  E + +   LLF AV  GNV+FL+ +
Sbjct:   322 GIDEVYRLKVMHLQAKKLLLGISEETLALGLKERSETVDEA--LLF-AVRYGNVDFLVEM 378

Query:   281 IQMYPNLIWKVDDHSRS-MFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 339
             I+    L+W     S S +F +AV  RQEK+F+L+Y L   K L+ + KD + N +LHLA
Sbjct:   379 IRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLA 438

Query:   340 GKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLV 399
             G  +PP +L    GA LQL+REL WFKE+E++     +E  N+E +TP  +F++EH+ L 
Sbjct:   439 GFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLR 498

Query:   400 REGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD-STGRPIFLHYKSFMVFAVSDA 458
             +E EKWMKDTA SC +VA LI TV FAA FTVPGG DD S G+P  L  + F++F VSD 
Sbjct:   499 QEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDL 558

Query:   459 LALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVL 518
             ++ F S TS+L+FL I+T+RY+ +DF+  LP ++I GL+ L              LF ++
Sbjct:   559 ISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMM 618

Query:   519 GDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTR 563
             G +  WI  P    AC+P  LF LLQ+PLL +MI   Y   IF R
Sbjct:   619 GKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTYGKGIFDR 663

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 218/570 (38%), Positives = 313/570 (54%)

Query:     7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT 66
             L G V  N +  Y  L+    +G  +  ++F N  P+AV   I+  +   L   A     
Sbjct:    65 LHGRVT-NEYYEYIQLNQGISQGRVEAVKDFLNRRPDAVDKYINPYETPLLKACAYGNPE 123

Query:    67 LFVQELVNLMTPEDLALR---NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGA 123
             + V+ L+  MTPE +  +   N   NT L   AVSG  +IAE +V KN +L  I GN G 
Sbjct:   124 I-VKLLLRRMTPEQMLPKMSQNNFYNTPLTVVAVSGNMEIAEALVAKNPKLLEIPGNNGE 182

Query:   124 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY---DVALDLIQHHPQ 180
              P+ +A      EM  YLY+ T  + L E+D    ++  ++A  Y   D+ALDL     +
Sbjct:   183 IPVVVAVENTQMEMARYLYNRTPVQVLLEKDGFHGILLFLNAIYYKKLDMALDLFNKSRR 242

Query:   181 LAMARDGNGETA-LHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELV 239
             LA+ +    E+  + VLA KP  F   + +G   +C+    G+  +   K+MHLQA +L+
Sbjct:   243 LAVTKHLRIESVPIIVLASKPDLFPD-TLMGKVLKCLSKCIGIDEVYRLKVMHLQAKKLL 301

Query:   240 KRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMF 299
             K + E+ L L   +  E + +   LLF AV  GNV+FL+ +I+    L+W     + ++F
Sbjct:   302 KGISEETLALGLKERSESVDEA--LLF-AVRYGNVDFLVEMIKNNSELLWSTG--TSTLF 356

Query:   300 HIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLR 359
             + AV  RQEK+F+L+Y LG  K L  + KD + N++LHLAG   P  +L     A LQ++
Sbjct:   357 NTAVQVRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQ 416

Query:   360 RELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATL 419
             REL WFKE+E++V     E  N+E  TP  +F +EH  +  E EKWMKDTA SC +VA L
Sbjct:   417 RELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAAL 476

Query:   420 IATVMFAAAFTVPGGNDDSTG-RPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSR 478
             I TV FAA FTVPGG DD++G RP   H + F++F VSD ++ F + TS+L+FL I+T+R
Sbjct:   477 IVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTAR 536

Query:   479 YAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVLGDDFVWIAIPIATGACVPVS 538
             YA +DF+ SLP  +I GL+TL              LF +  D   WI  P    AC P  
Sbjct:   537 YAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDP--WIVAPTIFFACFPAL 594

Query:   539 LFALLQFPLLSDMISHLYKYSIFTRRSNHL 568
             LF ++Q+PLL ++I   Y   IF R    L
Sbjct:   595 LFVMIQYPLLKELIFSTYGKRIFDRNMKSL 624

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 140/353 (39%), Positives = 205/353 (58%)

Query:   221 GMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPS--RLLFTAVELGNVEFLM 278
             G++   D K  H QA +L+K++     L D     E+  K +    L  A + GN +F +
Sbjct:   254 GIKQTYDLKKRHSQAQKLLKQMCTS--LRDIMAKNEIRWKETVYEALLEAAKSGNRDFFI 311

Query:   279 VLIQMYPNLIWKVDDHS-RSMFHIAVVHRQEKIFNLIYELGAHK-DLIASYKDENNNNML 336
              +I+    L+W ++  S R++F +AV  ++EKIFNLI+ L   K  L+ SY D+ NNN+L
Sbjct:   312 EIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSY-DKGNNNIL 370

Query:   337 HLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHR 396
             H+AG+L+ PD+L   SGAAL+++RE  WFKE+E +V       KN + +TP  +F   H 
Sbjct:   371 HIAGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHE 430

Query:   397 RLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVS 456
              L +EGE+WMK TA++C  VA LIATV F A FTVPGG D ++G P+ L+   F  F  +
Sbjct:   431 HLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFT 490

Query:   457 DALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFI 516
             D LA F S  S+L+FLSI+TSRY+ +DF+ SLP ++I+G + L              L  
Sbjct:   491 DTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSA 550

Query:   517 VLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRSNHLL 569
              +      +  P+   A  P  LF +LQ+PLL +MIS  Y   +F R + + L
Sbjct:   551 SMRHKPA-LVYPLKPLASFPSLLFLMLQYPLLKEMISSTYGKRLFYRDTKNWL 602

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 153/343 (44%), Positives = 219/343 (63%)

Query:   231 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWK 290
             M   A  +V+ LW  V+ L   +I + +     LLF A + GN+E L++LI+ YP+LIW 
Sbjct:     1 MRTLAHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWT 60

Query:   291 VDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKD-ENNNNMLHLAGKLAPPDRLK 349
             VD  ++S+FHIA ++R EKIFN IYELGA KDLIA YK+ E+N+N+LHL  +L PP+RL+
Sbjct:    61 VDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQ 120

Query:   350 IDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRRLVREGEKWMKDT 409
             + SGAALQ++RE+ W+K ++++V   Y + KN +    H LF++EH  L +EGEKWMK+T
Sbjct:   121 VVSGAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKET 180

Query:   410 ASSCMVVATLIATVMFAAAFTVPGGNDDS-----TGRPIFLHYKSFMVFAVSDALALFCS 464
             A++C++V+TLIATV+FAAAFT+PGGND S      G P F     F VF +SD++AL  S
Sbjct:   181 ATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSS 240

Query:   465 ATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVLGDDFVW 524
              TSI++FLSI+TSRYAE  F  +LP +L++GL  L              L ++   +  W
Sbjct:   241 VTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKW 300

Query:   525 IAIPIATGACVPVSLFALLQFPLLSDMI--SHLYKYSIFTRRS 565
               I +   A      F +L F L  D +  ++L K+    R+S
Sbjct:   301 SLILLVYVASATALSFVVLHFQLWFDTLRSAYLSKFLFHGRKS 343

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 176/487 (36%), Positives = 274/487 (56%)

Query:    88 GNTALCFAAVSGVTKIAEVMVNKNREL--P--SIRGNKGATPLCMAALLGHKEMIWYLYS 143
             GN+ +    ++   K  + + N  RE+  P  S++   G TPL  AA LG  E    L +
Sbjct:    83 GNSEIALH-IAVAAKHKDFVRNLLREMDPPDLSLKNKDGNTPLSFAAALGDIETAEMLIN 141

Query:   144 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF 203
             + +  DL +    + +  +  A LY    +++Q+       +D N +  L++     SA 
Sbjct:   142 MIR--DLPDISNEKTMTPIHIAALYGHG-EMVQYLFSKTSIKDLNDQQYLNLFHTMISAD 198

Query:   204 ASG--SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKP 261
               G  + +  W      +      L P     +AL L+ R    +       + + +   
Sbjct:   199 IYGVFADVPLWMLERVDLYRKELALYPNSN--KALHLLARKTSAISHKSQLNLFQQVAS- 255

Query:   262 SRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK 321
             S LLF A ELGNVE L++LI+ + +L+W VD+++R++FH+A ++R E IF+LIYELG  K
Sbjct:   256 SWLLFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIK 315

Query:   322 DLIASYKD-ENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK 380
             DLIASYK+ ++ + +LHL  +L P +R ++ SGAAL +++EL WFK ++++V  SY E K
Sbjct:   316 DLIASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETK 375

Query:   381 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDS-- 438
             N++G   H +F+E+H  L +EGE+WMK+TA++CM+ ATLIATV+FAAA T+PGGNDDS  
Sbjct:   376 NTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGD 435

Query:   439 ----TGRPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLII 494
                  G P F     F +F +SD++ALF S  SI++FLSI TSRYAEEDF + LP +L+ 
Sbjct:   436 KANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMF 495

Query:   495 GLATLXXXXXXXXXXXXXXLFIVLGDDFVWIAIPIATGACVPVSLFALLQFPLLSDMISH 554
             GL+ L              + ++  +      + I+  A +    FA L F L  + +  
Sbjct:   496 GLSALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYFHLWFNTLRS 555

Query:   555 LYKYSIF 561
             +Y  S+F
Sbjct:   556 VY-ISMF 561

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 9.2e-29, P = 9.2e-29
 Identities = 67/147 (45%), Positives = 91/147 (61%)

Query:    22 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 81
             L+ AALKGDW  A          +  +I+   +T LHIA  A+   FV+ L+  +   DL
Sbjct:    91 LYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGSLESNDL 150

Query:    82 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
             ALRN  GNTALCFAA SGV +IA++++ KN++LP IRG    TP+ MAAL GH EM+ YL
Sbjct:   151 ALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEMVKYL 210

Query:   142 YSVTKEEDLKEEDRIELLVAVIDAGLY 168
             Y  T+  +  +E+ + L  AVI A +Y
Sbjct:   211 YKNTRFREFNDEEFVNLFHAVISADIY 237

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 65/224 (29%), Positives = 111/224 (49%)

Query:   268 AVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL--GAHKDLIA 325
             AV+ G V+ L  +++  P+ +  +D  ++++ H+A  + + ++   I       +K+ + 
Sbjct:   357 AVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLI 416

Query:   326 SYKDENNNNMLHLAGKLAPP---DRLKIDSGAALQ-LRRELHWFKEI-EKVVQPSYR--E 378
             + +D N N  LHLA K   P     L  D+   L+ L  +     +I EK +  SY   E
Sbjct:   417 NEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDSSYTFFE 476

Query:   379 -----AKNSEG--RTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTV 431
                  A  S G  R P ++ S    +   +G K+ KD  ++ ++VATL+AT+ F A FT+
Sbjct:   477 RLTWMALISAGAPRGPKLILSTPVTQN-SDGGKY-KDRVNTLLLVATLVATMTFTAGFTL 534

Query:   432 PGGNDDST---GRPIFLHYKSFMVFAVSDALALFCSATSILMFL 472
             PGG + S    G        +F VF V D LA++CS  +I+  +
Sbjct:   535 PGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALI 578

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 130/532 (24%), Positives = 226/532 (42%)

Query:    51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 110
             R+ DT LH+AA       VQ+++  +  +   + +  G     F A   V +I   +VN+
Sbjct:    72 RHNDTELHLAAQRGDLAAVQQILKDINSQMEGILS--GEE---FDAE--VAEIRASIVNE 124

Query:   111 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI---ELLVAVIDAGL 167
               EL       G T L  AA  GH +++  L   +  E + +++R     L +A I  G 
Sbjct:   125 VNEL-------GETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQ-GH 176

Query:   168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILD 227
             + +   L+ H   L+     +  T L V A         +QL      +  +       +
Sbjct:   177 HAIVEVLLDHDATLSQTFGPSNATPL-VSAAMRGHTEVVNQLLSKAGNLLEISRSN---N 232

Query:   228 PKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL 287
                +HL A +    + + +L  D      + +K    L  AV+  + E + +L+   P +
Sbjct:   233 KNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAI 292

Query:   288 IWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR 347
             + + D    +  H+A   ++ +I  L+  L    D  A+    ++   L +A  L   + 
Sbjct:   293 VMQPDKSCNTALHVATRKKRAEIVELLLSL---PDTNANTLTRDHKTALDIAEGLPLSEE 349

Query:   348 ---LK---IDSGA--ALQL---RRELH-WFKEIEKVVQPSYREAKNSEGRTPHILFSEEH 395
                +K     SGA  A +L   R EL     +I+  V     + K +     +I  S+E 
Sbjct:   350 SSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNI--SKEL 407

Query:   396 RRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAV 455
             R+L REG   + +  +S  VVA L ATV FAA FTVPGG D++ G  + +   SF +F +
Sbjct:   408 RKLHREG---INNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFI 463

Query:   456 SDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLF 515
              +ALALF S   +++ ++++      E  V  + N+L+  LA++               +
Sbjct:   464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLM-WLASMCTSVAFLASS-----Y 517

Query:   516 IVLGDDFVWIA--IPIATGACVPVSLFALLQFPLLSDMISHLYKYSIFTRRS 565
             IV+G    W A  + +  G  +   L  +  + + S     + K     RRS
Sbjct:   518 IVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSARRS 569

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 111/456 (24%), Positives = 197/456 (43%)

Query:    51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 110
             R+ DT LH+AA       V+++++ +   D  +   +  T   F     V +I   +VN+
Sbjct:    86 RHNDTELHLAAQRGDLASVKQILSDI---DSQITGTI--TGADFD--DEVAQIMTSVVNE 138

Query:   111 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR--IELLVAVIDAGLY 168
               EL       G TPL  AA  G+ +++  L   T  E L +++    + L      G  
Sbjct:   139 VNEL-------GETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHR 191

Query:   169 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDP 228
              +   L++H PQL+     +  T L   A +  +      L      +  +         
Sbjct:   192 SIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAK-DSSLLEISRSNG---K 247

Query:   229 KLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI 288
               +HL A +    +   +L  D        +K    L  AV+  + + + +L++  P ++
Sbjct:   248 NALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIV 307

Query:   289 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN-----NNMLHLAGKLA 343
                D    ++ HIA   ++ +I N + +L    ++ A  +D          + H + + A
Sbjct:   308 MLPDKFGNTVLHIATRKKRAEIVNELLQL-PDTNVNALTRDHKTAYDIAEGLTH-SEETA 365

Query:   344 PPDRLKIDSGA--ALQL---RRELH-WFKEIEKVVQPSYREAKNSEGRTPHILFSEEHRR 397
                 +    GA  A +L   R EL     EI+K V     + + +      I  ++E R+
Sbjct:   366 EIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGI--AKELRK 423

Query:   398 LVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTGRPIFLHYKSFMVFAVSD 457
             L R G   + +  +S  VVA L ATV FAA FTVPGG+DD  G  + +H  SF +F + +
Sbjct:   424 LHRAG---INNATNSVTVVAVLFATVAFAAIFTVPGGDDDH-GVAVMVHATSFKIFFIFN 479

Query:   458 ALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLI 493
             A+ALF S   +++ ++++      E  V  + N+L+
Sbjct:   480 AIALFTSLAVVVVQITLVRGETKTERRVVEVINKLM 515

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 117/469 (24%), Positives = 207/469 (44%)

Query:    86 KVGNTALCFAAVSG-VTKIAEVM-----VNKNRELPSIRGNKGATPLCMAALLGH----K 135
             K G++ L  AA +G + K+ E++     + + +EL S +  +G TPL  AA  GH    +
Sbjct:   111 KRGDSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVE 170

Query:   136 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
             EM+ ++   T    +K  +  +        G  +    L++  P LAM  D +  TALH 
Sbjct:   171 EMLKHMDLDTAS--VKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHT 228

Query:   196 LARKPSAFASGSQLGFWRRC--IYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSK 253
              A +         L        I    G  A+     M  +  E+VK L     + +D+ 
Sbjct:   229 AASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHR--EVVKSL-----IGNDAS 281

Query:   254 IG-ELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFN 312
             IG    +K    L  AV+  N   ++ L++  P ++   D    +  H A    + KI  
Sbjct:   282 IGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVR 341

Query:   313 LIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKI--DSGAAL--QLRRELHWFKEI 368
              +       +L A  K    +  L +A K+  P+ + +  ++GAA    L +  +  K++
Sbjct:   342 CLVSFDGI-NLNAMNKA--GDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQL 398

Query:   369 EKVVQPSYREAKNS--EGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFA 426
              + V     E ++   + R   +      +RL +     + +  +S  VVA LIATV FA
Sbjct:   399 NQTVSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFA 458

Query:   427 AAFTVPGGNDDSTGRPIFLHYKS-------FMVFAVSDALALFCSATSILMFLSIIT-SR 478
             A FT+PG  ++   + + L  ++       F+VF + D+LALF S   +++  S++   +
Sbjct:   459 AIFTIPGQYEEDRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQ 518

Query:   479 YAEEDFVHSLPNRLIIGLATLXXXXXXXXXXXXXXLFIVLGDDFVWIAI 527
              A+++ V  + N+L+  LA L               FIV+G + +W+AI
Sbjct:   519 KAKKNLVFVI-NKLM-WLACLFISVAFVSLS-----FIVVGKEDIWLAI 560

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	570
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.001

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  123 bits (311), Expect = 1e-33
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 13/121 (10%)

Query: 403 EKWMKDTASSCMVVATLIATVMFAAAFTVPGG-----NDDSTGRPIFL-HYKSFMVFAVS 456
            +W++ T +S +VVATLIATV FAA FT PGG          G PI     + F  F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 457 DALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFI 516
           + +A   S  ++++ L I+        F   LP RL+  L  L++S+ ++M AFAA  + 
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 517 V 517
           V
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
           PLHLAA  G  +  +       + V  + +  + T LH+AA       V+ L+      D
Sbjct: 10  PLHLAASNGHLEVVKLLLENGAD-VNAKDNDGR-TPLHLAAKNGHLEIVKLLLE--KGAD 65

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
           +  R+K GNT L  AA +G   + ++++       + R   G TPL +AA  GH E++
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGA-DVNARDKDGRTPLHLAAKNGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 49  ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
              +  T LH+AA       V+ L+      D+  ++  G T L  AA +G  +I ++++
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
            K  +  + R   G TPL +AA  G+ +++  L
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 22  LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 81
           LHLAA  G+ +  +       +   V +    DTALH+AA       V+ L+      D+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDT-DTALHLAARNGNLEIVKLLLEHGA--DV 54

Query: 82  ALRNKVGNTALCFAAVSGVTKIAEVMVNKN 111
             ++K GNTAL  AA +G  +I ++++   
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 57  LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS 116
           LH+AA       V+ L+      D+ L +   +TAL  AA +G  +I ++++    ++ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG--ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 117 IRGNKGATPLCMAALLGHKEMIWYLYS 143
            +   G T L +AA  G+ E++  L  
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 21  PLHLAALKG-----DWDFARNFFNLNPEAVC-VRISRNQDTALHIAAGARRTLFVQELVN 74
           PLHLAAL G     + + A+       +         + +T LH AA       V+ L  
Sbjct: 109 PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL-- 166

Query: 75  LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 120
           L    D   RN  G TAL  AA +G  ++ +++++K   L  ++ N
Sbjct: 167 LEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 21  PLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76
           PLHLAA  G  +  +       ++N         ++ +T LH+AA       V+ L+   
Sbjct: 43  PLHLAAKNGHLEIVKLLLEKGADVN------ARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

Query: 77  TPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
              D+  R+K G T L  AA +G  ++ ++++
Sbjct: 97  A--DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	570
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PF13962	113	PGG: Domain of unknown function	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.34
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.85
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.78
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.77
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.76
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.76
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.76
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
PF13606	30	Ank_3: Ankyrin repeat	98.72
PF13606	30	Ank_3: Ankyrin repeat	98.7
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.66
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.64
KOG0522	560	consensus Ankyrin repeat protein [General function	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG0522	560	consensus Ankyrin repeat protein [General function	98.61
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.47
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.4
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.3
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.14
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.11
KOG0511	516	consensus Ankyrin repeat protein [General function	98.1
KOG2384	223	consensus Major histocompatibility complex protein	98.03
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.95
KOG2384	223	consensus Major histocompatibility complex protein	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.77
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.64
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.56
KOG2505	591	consensus Ankyrin repeat protein [General function	96.05
KOG2505	591	consensus Ankyrin repeat protein [General function	95.85
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.67
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.48
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.12
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.9
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.21
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.97
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.84
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.42

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-50  Score=440.00  Aligned_cols=351  Identities=16%  Similarity=0.139  Sum_probs=299.1

Q ss_pred             ccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHH-------------------------
Q 008328            7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA-------------------------   61 (570)
Q Consensus         7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~-------------------------   61 (570)
                      .|++....+..+.||||.|+..|+.|+|+.|++.+|..+... |..|+||||+|+                         
T Consensus        30 ~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~-~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (682)
T PHA02876         30 HGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYIT-DHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYA  108 (682)
T ss_pred             hhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhh-chhhccccccccCCCCccccccccccchhhcccccHH
Confidence            355566667889999999999999999999999988866666 889999999666                         


Q ss_pred             ---------------------------------------------hcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           62 ---------------------------------------------GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        62 ---------------------------------------------~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                                                                   ..|+.+++++|++  .|++++.+|..|.||||+|+
T Consensus       109 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~--~Gadvn~~d~~G~TpLh~Aa  186 (682)
T PHA02876        109 SIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE--GGADVNAKDIYCITPIHYAA  186 (682)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh--CCCCCCCCCCCCCCHHHHHH
Confidence                                                         5578899999999  89999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHh-----------------------------hccCC
Q 008328           97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY-----------------------------SVTKE  147 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll-----------------------------~~g~~  147 (570)
                      +.|+.++|++|+++|++++ ..+..|.||||+|+..|+.+++++|+                             +.|++
T Consensus       187 ~~G~~~iv~~LL~~Gad~n-~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~  265 (682)
T PHA02876        187 ERGNAKMVNLLLSYGADVN-IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFS  265 (682)
T ss_pred             HCCCHHHHHHHHHCCCCcC-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999999987 68899999999999999888776655                             45566


Q ss_pred             ccccccchhhHHHHHHHhCcH-HHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCc--cchh
Q 008328          148 EDLKEEDRIELLVAVIDAGLY-DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRA  224 (570)
Q Consensus       148 ~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  224 (570)
                      ++..+..|.||||+|+..++. ++++.|++.|+++ +.+|.+|+||||+|+..|.      ..+.++.|+..+.  +..+
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~------~~~~v~~Ll~~gadin~~d  338 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGY------DTENIRTLIMLGADVNAAD  338 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCC------CHHHHHHHHHcCCCCCCcc
Confidence            777888999999999999986 6899999999987 6899999999999999874      4677888886654  4567


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHH
Q 008328          225 ILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV  304 (570)
Q Consensus       225 ~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (570)
                      ..+.||+|.++.......+...+...|++++.+|..|.||||+|+..|+.++++.|+++|++ .+..+..|.||||+|+.
T Consensus       339 ~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        339 RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALC  417 (682)
T ss_pred             cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHH
Confidence            78899999998644333344556678999999999999999999999999999999999999 56779999999999998


Q ss_pred             hCc-hHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCC-CC--ccccCCchhhhhhHhhhhHHHhhhhcCchhhhhh
Q 008328          305 HRQ-EKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP-PD--RLKIDSGAALQLRRELHWFKEIEKVVQPSYREAK  380 (570)
Q Consensus       305 ~~~-~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~-~~--~~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~  380 (570)
                      .++ ..++++|++.|++++.    +|.+|+||||+|++.+. .+  .+++..|                     .+.+.+
T Consensus       418 ~~~~~~~vk~Ll~~gadin~----~d~~G~TpLh~Aa~~~~~~~iv~lLl~~G---------------------ad~n~~  472 (682)
T PHA02876        418 GTNPYMSVKTLIDRGANVNS----KNKDLSTPLHYACKKNCKLDVIEMLLDNG---------------------ADVNAI  472 (682)
T ss_pred             cCCHHHHHHHHHhCCCCCCc----CCCCCChHHHHHHHhCCcHHHHHHHHHCC---------------------CCCCCC
Confidence            765 5678999999999984    99999999999998763 22  2223333                     455899


Q ss_pred             ccCCCCcchhhhhh
Q 008328          381 NSEGRTPHILFSEE  394 (570)
Q Consensus       381 n~~G~Tpl~~a~~~  394 (570)
                      |..|+||+++|.+.
T Consensus       473 d~~g~tpl~~a~~~  486 (682)
T PHA02876        473 NIQNQYPLLIALEY  486 (682)
T ss_pred             CCCCCCHHHHHHHh
Confidence            99999999998864

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.2e-47  Score=391.24  Aligned_cols=305  Identities=16%  Similarity=0.129  Sum_probs=207.3

Q ss_pred             ChHHHHHHH--cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           19 YAPLHLAAL--KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        19 ~t~Lh~Aa~--~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                      .++||.++.  .++.++++.|++. +.+++.+ |.+|+||||+|++.|+.+++++|++  +|++++.+|.+|.||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~-d~~G~TpLh~Aa~~g~~eiv~lLL~--~GAdin~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHR-GYSPNET-DDDGNYPLHIASKINNNRIVAMLLT--HGADPNACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHC-cCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHH--CcCCCCCCCCCCCCHHHHHH
Confidence            567776553  3355667666654 4556655 6677777777777777777777777  67777777777777777766


Q ss_pred             HcC--cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc--HHHHH
Q 008328           97 VSG--VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL--YDVAL  172 (570)
Q Consensus        97 ~~g--~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~~  172 (570)
                      ..+  ..+++++|+++|++++...|..|.|||| |+..|+.+++++|++.|++++.+|..|+||||.|+..++  .++++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            654  3666777777777766445667777775 555566777777777777777777777777776665433  46677


Q ss_pred             HHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh-cCccchhccchhhhHHHHHHHHH-HHHHHHHhcC
Q 008328          173 DLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY-SVPGMRAILDPKLMHLQALELVK-RLWEQVLLLD  250 (570)
Q Consensus       173 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~lh~~~~~~~~-~l~~~~l~~~  250 (570)
                      +|++.|+++ +.+|.+|+||||+|+..+.     ...++++.|+. ..++.++..|.||+|.++..... ..++ .+...
T Consensus       193 ~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~-----~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~-~Ll~~  265 (446)
T PHA02946        193 WMMKLGISP-SKPDHDGNTPLHIVCSKTV-----KNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLIN-KLLST  265 (446)
T ss_pred             HHHHcCCCC-cccCCCCCCHHHHHHHcCC-----CcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHH-HHHhC
Confidence            777777766 4667777777777776542     13455555552 23444556677777766643221 1111 11111


Q ss_pred             ccc--------------------hhhh-ccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchH
Q 008328          251 DSK--------------------IGEL-LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEK  309 (570)
Q Consensus       251 ~~~--------------------~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  309 (570)
                      +.+                    ++.. +..|.||||+|+.+|+.++|++|+++|+        .|+||||+|+.+++.+
T Consensus       266 g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~~  337 (446)
T PHA02946        266 SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYET  337 (446)
T ss_pred             CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHHH
Confidence            111                    1111 1357899999999999999999999764        4789999999999999


Q ss_pred             HHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc
Q 008328          310 IFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL  348 (570)
Q Consensus       310 iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~  348 (570)
                      ++++|+++|+++|.    + .+|+||||+|++.++.+.+
T Consensus       338 ~v~~Ll~~ga~~n~----~-~~G~t~l~~a~~~~~~~~~  371 (446)
T PHA02946        338 MVDYLLFNHFSVDS----V-VNGHTCMSECVRLNNPVIL  371 (446)
T ss_pred             HHHHHHHCCCCCCC----c-cccccHHHHHHHcCCHHHH
Confidence            99999999999883    4 6899999999999887643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.2e-46  Score=376.36  Aligned_cols=414  Identities=16%  Similarity=0.153  Sum_probs=319.8

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      .....|..|.||||+|+.....+.++.+++. |.+.... |.++.+|+|+|+..|+.+..+.|++  +++|+|..|+.|.
T Consensus        80 ~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~-n~~~~aplh~A~~~~~~s~L~~Ll~--~~~dvnl~de~~~  155 (929)
T KOG0510|consen   80 ISYAKDSADNTPLHAAVEYNQGDKIQVLLSY-GADTPLR-NLNKNAPLHLAADSGNYSCLKLLLD--YGADVNLEDENGF  155 (929)
T ss_pred             hhhhhhcccCchhHHHhhcchHHHHHHHHhc-CCCCChh-hhhccCchhhccccchHHHHHHHHH--hcCCccccccCCC
Confidence            3456688899999999999999999999986 5666666 8999999999999999999999999  7899999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhh-----ccCCccccccchhhHHHHHHH
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS-----VTKEEDLKEEDRIELLVAVID  164 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~  164 (570)
                      ||||+||..++.|..+.|++.|+++. ..|.+|.+|+|.|+++|..|+.+..+.     ++..+|.-+.++.+|||.|++
T Consensus       156 TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  156 TPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             chhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            99999999999998899999999987 699999999999999999999999998     677899999999999999999


Q ss_pred             hCcHHHHHHHHhhCccc--------------ccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccc--hhccch
Q 008328          165 AGLYDVALDLIQHHPQL--------------AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM--RAILDP  228 (570)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~--------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~  228 (570)
                      .|+.++++.+++.+...              .+..|++|.||||+|++.|       ..+.++.|+..+.++  ++..+.
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G-------~~~svd~Ll~~Ga~I~~kn~d~~  307 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQG-------GPESVDNLLGFGASINSKNKDEE  307 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcC-------ChhHHHHHHHcCCcccccCCCCC
Confidence            99999999999987642              3567999999999999999       478899999877766  456778


Q ss_pred             hhhHHHHHHHHHHHHHHHHh-cCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc--cccCCCCchhHHHHHh
Q 008328          229 KLMHLQALELVKRLWEQVLL-LDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW--KVDDHSRSMFHIAVVH  305 (570)
Q Consensus       229 ~~lh~~~~~~~~~l~~~~l~-~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~d~~g~t~Lh~A~~~  305 (570)
                      +|+|.|+.-..-..++++|. .+....+..|-.|+||||+|+++||.++++.|+++|+...+  ..|.+|.||||.|+..
T Consensus       308 spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKY  387 (929)
T ss_pred             CchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHh
Confidence            99999997655555556665 45667888999999999999999999999999999999765  5599999999999999


Q ss_pred             CchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCC-CccccCCchhhhhhHhhh-hHHHhhhhcCc-hhhhhhcc
Q 008328          306 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP-DRLKIDSGAALQLRRELH-WFKEIEKVVQP-SYREAKNS  382 (570)
Q Consensus       306 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~-~~~~~~~ga~~~~~~~l~-~~~~~~~~~~~-~~~~~~n~  382 (570)
                      |+..+|++|+.+|+++..    +|+.|.+++++--....+ +.........+ ...... ..+.++..+.. .......+
T Consensus       388 g~~~av~~Li~~Ga~I~~----~n~~g~SA~~~~~~~~~p~~~~~~~~n~c~-~~~~i~~~pe~~e~vlD~c~l~~~e~~  462 (929)
T KOG0510|consen  388 GNTSAVQKLISHGADIGV----KNKKGKSAFDTRPDRCLPVFVHRSPFNKCP-TTELIEPLPECFEIVLDFCILKSQERK  462 (929)
T ss_pred             ccHHHHHHHHHcCCceee----ccccccccccccccccccHHHhhCCCCCcc-hhhhhccchHHHHHHHHHHHHHHhhcc
Confidence            999999999999999986    999999999962111111 11000000000 000000 11222222222 12233456


Q ss_pred             CCCCcchhhhh---------hhhhhhhh-------hhhhhHhh----hhhhHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008328          383 EGRTPHILFSE---------EHRRLVRE-------GEKWMKDT----ASSCMVVATLIATVMFAAAFTVPGGNDDSTG  440 (570)
Q Consensus       383 ~G~Tpl~~a~~---------~~~~~~~~-------~~~~~~~~----~~~~~vva~LIATvtFaA~ft~PGG~~~~~G  440 (570)
                      ++.||...-..         +..++.+.       .-||.+-.    -.++.+-+.-++.+|+=.-.+.||--..++|
T Consensus       463 ~~~~~~Q~~~~~~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~g~~~~~~nL~~Y~lFlv~lT~Yv~~~~~~~~~n~~~  540 (929)
T KOG0510|consen  463 DSPTPLQDEAAPILNIMVDKEQIELLEHPLSSSFLFMKWNRYGKYFHLNNLLIYSLFLVSLTIYVLLIKAGMAFNSSG  540 (929)
T ss_pred             CCCChhhhhhhhHHHHHhhhhHHHHhcChhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            67888763222         22222111       12454332    3456677777778888777788875433344

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=9e-46  Score=382.63  Aligned_cols=328  Identities=12%  Similarity=0.041  Sum_probs=268.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHh--cCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG--ARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      ..-+|+.+...++.+.++.+++...       ...+.++||.++.  .++.++|++|++  .|+++|.+|.+|+||||+|
T Consensus         9 ~~~sl~~~~~~~n~~~~~~~l~~~~-------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~G~TpLh~A   79 (446)
T PHA02946          9 YYLSLYAKYNSKNLDVFRNMLQAIE-------PSGNYHILHAYCGIKGLDERFVEELLH--RGYSPNETDDDGNYPLHIA   79 (446)
T ss_pred             HHHHHHHHHccCcHHHHHHHHhccC-------CCCCChHHHHHHHhcCCCHHHHHHHHH--CcCCCCccCCCCCCHHHHH
Confidence            3457889999999999999886410       2335799998774  457899999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC--HHHHHHHhhccCCccc-cccchhhHHHHHHHhCcHHHHH
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH--KEMIWYLYSVTKEEDL-KEEDRIELLVAVIDAGLYDVAL  172 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~--~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~  172 (570)
                      ++.|+.+++++|+++|++++ .+|..|.||||+|+..++  .+++++|+++|++++. .+.+|.|||| |+..++.++++
T Consensus        80 a~~g~~eiv~lLL~~GAdin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~  157 (446)
T PHA02946         80 SKINNNRIVAMLLTHGADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFK  157 (446)
T ss_pred             HHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHH
Confidence            99999999999999999998 799999999999998764  8999999999999995 6899999998 66678999999


Q ss_pred             HHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCcc--chhccchhhhHHHHHHH--HHHHHHHHHh
Q 008328          173 DLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG--MRAILDPKLMHLQALEL--VKRLWEQVLL  248 (570)
Q Consensus       173 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lh~~~~~~--~~~l~~~~l~  248 (570)
                      .|++.|++. +.+|..|+||||+|+..++.     ..++++.|+..+.+  .++..|.||||+++...  ....++ ++.
T Consensus       158 ~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~-----~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~-lLl  230 (446)
T PHA02946        158 KIMSIGFEA-RIVDKFGKNHIHRHLMSDNP-----KASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIIN-LLL  230 (446)
T ss_pred             HHHhccccc-cccCCCCCCHHHHHHHhcCC-----CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHH-HHH
Confidence            999999988 68999999999999876642     46788999877655  45789999999999653  222332 233


Q ss_pred             cCccchhhhccCCChHHHHHHHcCc-HHHHHHHHHhCCccc-------------------cc-ccCCCCchhHHHHHhCc
Q 008328          249 LDDSKIGELLRKPSRLLFTAVELGN-VEFLMVLIQMYPNLI-------------------WK-VDDHSRSMFHIAVVHRQ  307 (570)
Q Consensus       249 ~~~~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~-------------------~~-~d~~g~t~Lh~A~~~~~  307 (570)
                       .+++++.+|..|.||||+|+..++ .++++.|+++|++..                   +. -+..|+||||+|+.+|+
T Consensus       231 -~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~  309 (446)
T PHA02946        231 -PSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGS  309 (446)
T ss_pred             -cCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCC
Confidence             479999999999999999999988 589999999886421                   11 12357899999999999


Q ss_pred             hHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc--cccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCCC
Q 008328          308 EKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGR  385 (570)
Q Consensus       308 ~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~--~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G~  385 (570)
                      .+++++|+++|+           +|+||||+|+..++.+.  +++..|+                     +++.+ .+|+
T Consensus       310 ~eivk~Ll~~~~-----------~~~t~L~~A~~~~~~~~v~~Ll~~ga---------------------~~n~~-~~G~  356 (446)
T PHA02946        310 IRCVKYLLDNDI-----------ICEDAMYYAVLSEYETMVDYLLFNHF---------------------SVDSV-VNGH  356 (446)
T ss_pred             HHHHHHHHHCCC-----------ccccHHHHHHHhCHHHHHHHHHHCCC---------------------CCCCc-cccc
Confidence            999999998753           47899999999887653  2333343                     33665 5899


Q ss_pred             Ccchhhhhhhhh
Q 008328          386 TPHILFSEEHRR  397 (570)
Q Consensus       386 Tpl~~a~~~~~~  397 (570)
                      ||+++|.+....
T Consensus       357 t~l~~a~~~~~~  368 (446)
T PHA02946        357 TCMSECVRLNNP  368 (446)
T ss_pred             cHHHHHHHcCCH
Confidence            999999876543

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-43  Score=369.46  Aligned_cols=351  Identities=13%  Similarity=0.089  Sum_probs=266.5

Q ss_pred             Ccc-cCCCCCChHHHHHHHcC---CHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcC--CHHHHHHHHHccCcccccc
Q 008328           10 GVE-RNCFTSYAPLHLAALKG---DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR--RTLFVQELVNLMTPEDLAL   83 (570)
Q Consensus        10 ~~~-~~d~~g~t~Lh~Aa~~g---~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~   83 (570)
                      ++| .+|.+|+||||+|+..|   +.|+|+.||+ +|++++.+ |..|+||||+|+..|  +.|+|++|++...+++++.
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~k-D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCR-NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCccc-CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            566 78899999999999997   5999999886 57888888 999999999999977  7999999999333556688


Q ss_pred             cccCCChHHHHHHH--cCcHHHHHHHHh-cCCCCCCcCC----CCCCcHHHHHHHcCCHHHHHHHhhccCCcc-------
Q 008328           84 RNKVGNTALCFAAV--SGVTKIAEVMVN-KNRELPSIRG----NKGATPLCMAALLGHKEMIWYLYSVTKEED-------  149 (570)
Q Consensus        84 ~d~~g~TpLh~A~~--~g~~~iv~~Ll~-~~~~~~~~~~----~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~-------  149 (570)
                      .|..+.+|||.++.  +++.+++++|++ .+.+++...+    ..|.+|+++|...++.|+|++|+++|++++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            88889999999998  899999999997 5566653322    379999999999999999999999999985       


Q ss_pred             ccccch-hhHHHHH------HHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh-----
Q 008328          150 LKEEDR-IELLVAV------IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY-----  217 (570)
Q Consensus       150 ~~~~~g-~t~L~~A------~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~-----  217 (570)
                      ..+..+ .|.||+.      ..+++.|++++|+++|+++ +.+|.+|+||||++....+     .+.++++.|+.     
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~-----~~~eiv~~Li~~~~~~  263 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCST-----IDIEIVKLLIKDVDTC  263 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCc-----ccHHHHHHHHhccccc
Confidence            133334 4556633      3457889999999999998 7999999999996333211     13677777776     


Q ss_pred             ---------------------------cCccch----------------------hccchh-------------------
Q 008328          218 ---------------------------SVPGMR----------------------AILDPK-------------------  229 (570)
Q Consensus       218 ---------------------------~~~~~~----------------------~~~~~~-------------------  229 (570)
                                                 .+.+..                      +..+.+                   
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~  343 (672)
T PHA02730        264 SVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIV  343 (672)
T ss_pred             cccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHH
Confidence                                       122110                      011111                   


Q ss_pred             --hhHHHHH-H-HHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCc----HHHHHHHHHhCCc-ccccccCCCCchhH
Q 008328          230 --LMHLQAL-E-LVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VEFLMVLIQMYPN-LIWKVDDHSRSMFH  300 (570)
Q Consensus       230 --~lh~~~~-~-~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh  300 (570)
                        .||.-.. . .+..-+.++|...|++++.. ..|.||||+|+..++    .+++++|+++|++ .++.+|.+|+||||
T Consensus       344 q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        344 QAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence              1111111 1 13333445666779999985 789999999998875    8999999999984 36777999999999


Q ss_pred             H---HHHhC---------chHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCC--ccccCCchhhhhhHhhhhHH
Q 008328          301 I---AVVHR---------QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQLRRELHWFK  366 (570)
Q Consensus       301 ~---A~~~~---------~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~--~~~~~~ga~~~~~~~l~~~~  366 (570)
                      .   |...+         ..+++++|+++|++++    ++|..|+||||+|+..++.+  .+++..|+            
T Consensus       423 ~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADIN----akD~~G~TPLh~Aa~~~~~eive~LI~~GA------------  486 (672)
T PHA02730        423 GLILSRFNNCGYHCYETILIDVFDILSKYMDDID----MIDNENKTLLYYAVDVNNIQFARRLLEYGA------------  486 (672)
T ss_pred             HHHHHHhccccccccchhHHHHHHHHHhcccchh----ccCCCCCCHHHHHHHhCCHHHHHHHHHCCC------------
Confidence            4   33232         2357999999999998    49999999999999987754  22333444            


Q ss_pred             HhhhhcCchhhhhhcc-CCCCcchhhhhh
Q 008328          367 EIEKVVQPSYREAKNS-EGRTPHILFSEE  394 (570)
Q Consensus       367 ~~~~~~~~~~~~~~n~-~G~Tpl~~a~~~  394 (570)
                               +++.+|. .|.||+++|+..
T Consensus       487 ---------dIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        487 ---------SVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             ---------CCCCCCCcCCcCHHHHHHHh
Confidence                     4488886 599999999763

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-44  Score=365.29  Aligned_cols=339  Identities=19%  Similarity=0.183  Sum_probs=290.4

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      -.+..+..|+|++|.|+..+..      +++ ....... |..|+||||+|+.....+.++.|++  .|++++..|..+.
T Consensus        53 ~~~~~~~~gd~~~~~~~~~~y~------~~~-~~~~~a~-D~~~n~~l~~a~~~~~~~~i~~Lls--~gad~~~~n~~~~  122 (929)
T KOG0510|consen   53 STPGKRAFGDTELHHASARNYI------LSK-LAISYAK-DSADNTPLHAAVEYNQGDKIQVLLS--YGADTPLRNLNKN  122 (929)
T ss_pred             ccchhhhhchhHHHHHHhhcch------hhh-hhhhhhh-hcccCchhHHHhhcchHHHHHHHHh--cCCCCChhhhhcc
Confidence            3456677899999999998865      222 1223344 8899999999999999999999999  8999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHH
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  169 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  169 (570)
                      +|+|+|+..|+.+..+.|+++|++++ ..|..|.||||+||..++.|..+.|++.|+++...|.+|..|+|.|++.|..+
T Consensus       123 aplh~A~~~~~~s~L~~Ll~~~~dvn-l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e  201 (929)
T KOG0510|consen  123 APLHLAADSGNYSCLKLLLDYGADVN-LEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKE  201 (929)
T ss_pred             CchhhccccchHHHHHHHHHhcCCcc-ccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchh
Confidence            99999999999999999999999988 79999999999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHh-----hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccc-----------------hhccc
Q 008328          170 VALDLIQ-----HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM-----------------RAILD  227 (570)
Q Consensus       170 ~~~~Ll~-----~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~  227 (570)
                      +.+..+.     ++..+ +..+.+|.||||.|+..|       +.+.++.+++.+...                 .+..|
T Consensus       202 ~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g-------~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg  273 (929)
T KOG0510|consen  202 CMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGG-------DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDG  273 (929)
T ss_pred             hhhhhhccccchhhccc-ccccCCCCcchhhhhhcC-------CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccC
Confidence            9999998     44444 677899999999999998       478888888665432                 34467


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCchhHHHHHhC
Q 008328          228 PKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHR  306 (570)
Q Consensus       228 ~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~  306 (570)
                      .||+|+++.++....++. ++..|++++.+++++.||||.|+..|+.+.|+.||+ .+.-..+..|-.|+||||+|+++|
T Consensus       274 ~tpLH~a~r~G~~~svd~-Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDN-LLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             CchHHHHHHcCChhHHHH-HHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            899999998777666654 456799999999999999999999999999999999 666667788999999999999999


Q ss_pred             chHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc--cccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCC
Q 008328          307 QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEG  384 (570)
Q Consensus       307 ~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~--~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G  384 (570)
                      +.+++++|++.|++... ..+.|.+|+||||.|++.|+...  .++..|+++                     ..+|+.|
T Consensus       353 H~~v~qlLl~~GA~~~~-~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I---------------------~~~n~~g  410 (929)
T KOG0510|consen  353 HDRVVQLLLNKGALFLN-MSEADSDGNTALHLAAKYGNTSAVQKLISHGADI---------------------GVKNKKG  410 (929)
T ss_pred             HHHHHHHHHhcChhhhc-ccccccCCchhhhHHHHhccHHHHHHHHHcCCce---------------------eeccccc
Confidence            99999999999998762 11459999999999999998763  344455544                     5667777


Q ss_pred             CCcchh
Q 008328          385 RTPHIL  390 (570)
Q Consensus       385 ~Tpl~~  390 (570)
                      +|++++
T Consensus       411 ~SA~~~  416 (929)
T KOG0510|consen  411 KSAFDT  416 (929)
T ss_pred             cccccc
Confidence            777663

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-43  Score=388.03  Aligned_cols=330  Identities=15%  Similarity=0.096  Sum_probs=267.2

Q ss_pred             eccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc
Q 008328            4 LKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL   83 (570)
Q Consensus         4 l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~   83 (570)
                      |...|+++|.+|..|+||||+||+.|+.++|+.|++. +.+++.. +.+|.||||+|+..|+.++++.|++  .+.+++ 
T Consensus       164 Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~--~~~~~~-  238 (682)
T PHA02876        164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNII-ALDDLSVLECAVDSKNIDTIKAIID--NRSNIN-  238 (682)
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCC-
Confidence            3455777777777777777777777777777777764 4555555 6777777777777777777777777  555543 


Q ss_pred             cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH-HHHHHHhhccCCccccccchhhHHHHH
Q 008328           84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK-EMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                         .+.++|+.|+..++.+++++|++.|.+++ ..|..|.||||+|+..|+. +++++|++.|++++..|.+|.||||.|
T Consensus       239 ---~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~A  314 (682)
T PHA02876        239 ---KNDLSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLM  314 (682)
T ss_pred             ---CCcHHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence               23467777777777788888888888877 5788999999999999986 699999999999999999999999999


Q ss_pred             HHhC-cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCc--cchhccchhhhHHHHHHHH
Q 008328          163 IDAG-LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRAILDPKLMHLQALELV  239 (570)
Q Consensus       163 ~~~~-~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~lh~~~~~~~  239 (570)
                      +..| +.++++.|++.|+++ +..|..|.||||+|+..+.      ..++++.++..+.  +.++..|.||+|.++....
T Consensus       315 a~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~------~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~  387 (682)
T PHA02876        315 AKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDR------NKDIVITLLELGANVNARDYCDKTPIHYAAVRNN  387 (682)
T ss_pred             HHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCC------cHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC
Confidence            9999 589999999999998 6899999999999998654      4677788876554  4567789999999996554


Q ss_pred             HHHHHHHHhcCccchhhhccCCChHHHHHHHcCc-HHHHHHHHHhCCcccccccCCCCchhHHHHHhC-chHHHHHHHHh
Q 008328          240 KRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN-VEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR-QEKIFNLIYEL  317 (570)
Q Consensus       240 ~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~iv~~Ll~~  317 (570)
                      ...++. +...|++++..+..|.||||+|+..++ .++++.|++.|++ ++.+|..|+||||+|+..+ +.+++++|++.
T Consensus       388 ~~iv~~-Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        388 VVIINT-LLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             HHHHHH-HHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence            444433 445689999999999999999998665 5789999999999 6788999999999999977 68999999999


Q ss_pred             CchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchh
Q 008328          318 GAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAA  355 (570)
Q Consensus       318 g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~  355 (570)
                      |++++.    +|..|+||||+|+.++....+++..|+.
T Consensus       466 Gad~n~----~d~~g~tpl~~a~~~~~~v~~Ll~~~a~  499 (682)
T PHA02876        466 GADVNA----INIQNQYPLLIALEYHGIVNILLHYGAE  499 (682)
T ss_pred             CCCCCC----CCCCCCCHHHHHHHhCCHHHHHHHCCCC
Confidence            999985    9999999999999876543444444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.8e-43  Score=364.84  Aligned_cols=276  Identities=18%  Similarity=0.196  Sum_probs=231.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      ..|+.|+..|+.+.++.+++..+..++.. +.+|.||||.|++.|+.++|++|++  .|++++..+..|.||||.|+..|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~--~Ga~~n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIK--HGADINHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcC
Confidence            36899999999999999998877777666 7889999999999999999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCC----------------------CcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhh
Q 008328          100 VTKIAEVMVNKNRELP----------------------SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE  157 (570)
Q Consensus       100 ~~~iv~~Ll~~~~~~~----------------------~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  157 (570)
                      +.+++++|+++|++..                      ..+|..|.||||+|+..|+.+++++|+++|++++.++.+|.|
T Consensus        80 ~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~t  159 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY  159 (434)
T ss_pred             CHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            9999999998876532                      146777888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHH
Q 008328          158 LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALE  237 (570)
Q Consensus       158 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~  237 (570)
                      |||+|+..++.+++++|+++|+++ +..|..|+||||+|+..|+       .+                           
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~-------~~---------------------------  204 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGD-------YA---------------------------  204 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC-------HH---------------------------
Confidence            888888888888888888888776 4777888888888888774       23                           


Q ss_pred             HHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhC-chHHHHHHHH
Q 008328          238 LVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHR-QEKIFNLIYE  316 (570)
Q Consensus       238 ~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~iv~~Ll~  316 (570)
                      .++.+     ...+.+++..+..|.||||.|+..++ +.+++|+ .|++ .+.+|..|+||||+|+..+ +.+++++|++
T Consensus       205 iv~~L-----l~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~  276 (434)
T PHA02874        205 CIKLL-----IDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLY  276 (434)
T ss_pred             HHHHH-----HhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHH
Confidence            33333     23477788888899999999999875 5666666 5777 5678999999999999876 7899999999


Q ss_pred             hCchhhhhhhhcccCCCcHHHHhhhhCCC
Q 008328          317 LGAHKDLIASYKDENNNNMLHLAGKLAPP  345 (570)
Q Consensus       317 ~g~~~~~~~n~~d~~G~TpLh~A~~~~~~  345 (570)
                      +|++++.    +|..|+||||+|++.++.
T Consensus       277 ~gad~n~----~d~~g~TpL~~A~~~~~~  301 (434)
T PHA02874        277 HKADISI----KDNKGENPIDTAFKYINK  301 (434)
T ss_pred             CcCCCCC----CCCCCCCHHHHHHHhCCc
Confidence            9999985    999999999999987743

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-43  Score=375.53  Aligned_cols=321  Identities=13%  Similarity=0.036  Sum_probs=250.8

Q ss_pred             cccc-CCcccC-CCCCChHHHHHHH--cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCC--HHHHHHHHHccCc
Q 008328            5 KCLK-GGVERN-CFTSYAPLHLAAL--KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR--TLFVQELVNLMTP   78 (570)
Q Consensus         5 ~~~~-~~~~~~-d~~g~t~Lh~Aa~--~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~--~~~v~~Ll~~~~~   78 (570)
                      ...| +++|.. |..|+||||.|+.  .++.++++.|++. +.+++.+ |..|.||||+|++.|+  .++|++|++  .|
T Consensus       162 Le~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~k-D~~G~TPLH~Aa~~g~~~~eIVklLLe--~G  237 (764)
T PHA02716        162 VDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQ-NNHLITPLHTYLITGNVCASVIKKIIE--LG  237 (764)
T ss_pred             HHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCCCHHHHHHHHH--cC
Confidence            3456 889988 8999999999865  4688999988875 6778887 8999999999999995  599999999  89


Q ss_pred             ccccccccCCChHHHHH-------------------------------------HHcCcHHHHHHHHhcCCCCCCcCCCC
Q 008328           79 EDLALRNKVGNTALCFA-------------------------------------AVSGVTKIAEVMVNKNRELPSIRGNK  121 (570)
Q Consensus        79 ~~~~~~d~~g~TpLh~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~~~~~~~  121 (570)
                      ++++.+|..|.||||+|                                     ++.|+.+++++|+++|++++ .+|..
T Consensus       238 ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~kD~~  316 (764)
T PHA02716        238 GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH-YKDSA  316 (764)
T ss_pred             CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-ccCCC
Confidence            99999999999999975                                     34578899999999999987 68999


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHhhccCCccccccchhhHHHHHHH--------------hCcHHHHHHHHhhCccccccc
Q 008328          122 GATPLCMAAL--LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID--------------AGLYDVALDLIQHHPQLAMAR  185 (570)
Q Consensus       122 g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--------------~~~~~~~~~Ll~~~~~~~~~~  185 (570)
                      |+||||+|+.  .++.+++++|+++|++++.+|..|.||||.|+.              .++.+++++|+++|+++ +.+
T Consensus       317 G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~k  395 (764)
T PHA02716        317 GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAV  395 (764)
T ss_pred             CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCc
Confidence            9999998864  467899999999999999999999999998875              36889999999999998 689


Q ss_pred             CCCCCcHHHHH-HcCCCccccCCchhhhhhhhhcCccc--h--------hccchhh--hHHHHHHHH----HH-------
Q 008328          186 DGNGETALHVL-ARKPSAFASGSQLGFWRRCIYSVPGM--R--------AILDPKL--MHLQALELV----KR-------  241 (570)
Q Consensus       186 d~~g~tpLh~A-~~~~~~~~~~~~~~~~~~l~~~~~~~--~--------~~~~~~~--lh~~~~~~~----~~-------  241 (570)
                      |..|+||||.+ +...+    ....++++.|+..+...  .        ...+.+|  +|..+....    ..       
T Consensus       396 n~~G~TPLh~y~~~a~n----~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~  471 (764)
T PHA02716        396 NCLGYTPLTSYICTAQN----YMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY  471 (764)
T ss_pred             CCCCCChHHHHHHHHHh----cChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc
Confidence            99999999942 22110    12467888887654321  0        1112222  333332110    00       


Q ss_pred             ------HHHHHHhcCccchhhhccCCChHHHHHHHcCcH-----HHHHHHHHhCCcccccccCCCCchhHHHHHhCch--
Q 008328          242 ------LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNV-----EFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQE--  308 (570)
Q Consensus       242 ------l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~-----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--  308 (570)
                            .+...+...+.+++..|..|+||||+|+..|+.     |++++|++.|++ ++.+|.+|+||||+|+++|+.  
T Consensus       472 ~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD-IN~~d~~G~TPLh~A~~~g~~~~  550 (764)
T PHA02716        472 DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN-INIPTKNGVTPLMLTMRNNRLSG  550 (764)
T ss_pred             cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC-CcccCCCCCCHHHHHHHcCCccc
Confidence                  011122234566778889999999999999876     556999999999 667899999999999999976  


Q ss_pred             ---HHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCC
Q 008328          309 ---KIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD  346 (570)
Q Consensus       309 ---~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~  346 (570)
                         ++|++|+++|++++.+          .|++|...++.+
T Consensus       551 ~~~eIvk~LL~~ga~~~~~----------~l~~~~~~~~~~  581 (764)
T PHA02716        551 HQWYIVKNILDKRPNVDIV----------IIFLDKCYANGK  581 (764)
T ss_pred             cHHHHHHHHHhcCCCcchH----------HHHHHhhhhhhH
Confidence               9999999999998852          378887666655

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-43  Score=376.02  Aligned_cols=351  Identities=12%  Similarity=0.038  Sum_probs=235.4

Q ss_pred             ccCCcccCCCCCChHHHHHHHc---CCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCC------------------
Q 008328            7 LKGGVERNCFTSYAPLHLAALK---GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR------------------   65 (570)
Q Consensus         7 ~~~~~~~~d~~g~t~Lh~Aa~~---g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~------------------   65 (570)
                      .|..++..|.+|+||||+||..   |+.++|+.||+. +.+++.+ |..|+||||+|+..|+                  
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~-~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~   98 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHK-NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS   98 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCcccc-CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC
Confidence            5666777788999999987555   779999888864 5667766 8888999998887665                  


Q ss_pred             -----------------HHHHHHHHHccCcccccccccCCChHHHHHH--HcCcHHHHHHHHhcCCCCCCcCC---CCC-
Q 008328           66 -----------------TLFVQELVNLMTPEDLALRNKVGNTALCFAA--VSGVTKIAEVMVNKNRELPSIRG---NKG-  122 (570)
Q Consensus        66 -----------------~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~~g-  122 (570)
                                       .++|++|++  +|+|++.+|.+|.||||.|+  ..|+.+++++|+++|++++ .+|   ..| 
T Consensus        99 n~~~~~~~~~~a~~~~~~e~vk~Ll~--~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~  175 (661)
T PHA02917         99 NINDFNIFSYMKSKNVDVDLIKVLVE--HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGY  175 (661)
T ss_pred             CCCCcchHHHHHhhcCCHHHHHHHHH--cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-cccccccccc
Confidence                             345555555  56667777777777776433  3566777777777777665 222   222 


Q ss_pred             ----------CcHHHHHHH-----------cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcH--HHHHHHHhhCc
Q 008328          123 ----------ATPLCMAAL-----------LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY--DVALDLIQHHP  179 (570)
Q Consensus       123 ----------~TpLh~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~~~  179 (570)
                                .||||+|+.           .++.+++++|+++|+|++.+|.+|.||||+|+.+|+.  ++++.|++ |+
T Consensus       176 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        176 AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             ccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence                      477777664           3466777777777777777777777777777776664  56666654 54


Q ss_pred             ccc---cccCCCCCcHHHHHHcCCCcccc--CCchhhhhhhhhcCccch---------------------hccchhhhHH
Q 008328          180 QLA---MARDGNGETALHVLARKPSAFAS--GSQLGFWRRCIYSVPGMR---------------------AILDPKLMHL  233 (570)
Q Consensus       180 ~~~---~~~d~~g~tpLh~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~---------------------~~~~~~~lh~  233 (570)
                      +..   ...|..|.+|+|+|+..++....  .-+.++++.|+..+.+..                     ...+.+++|.
T Consensus       255 d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (661)
T PHA02917        255 DNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHI  334 (661)
T ss_pred             cccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHH
Confidence            432   13455566666666643221111  125788999998875421                     1112223332


Q ss_pred             HHHHH----HHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCchhHHHHHhC--
Q 008328          234 QALEL----VKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHR--  306 (570)
Q Consensus       234 ~~~~~----~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~--  306 (570)
                      ...-.    .+.-+-+.|...|++++.++..|.++.    ...+.++++.|+. .|++.++. +.+|+||||.|++.+  
T Consensus       335 l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~-~~~G~TpL~~a~~~~~~  409 (661)
T PHA02917        335 LIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNH-LDDGEIPIGHLCKSNYG  409 (661)
T ss_pred             HHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCcccc-CCCCCChhHHHHHhccc
Confidence            22100    012233556677999999999998854    4667888999887 58875655 557999999998543  


Q ss_pred             ---------------------chHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc--cccCCchhhhhhHhhh
Q 008328          307 ---------------------QEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQLRRELH  363 (570)
Q Consensus       307 ---------------------~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~--~~~~~ga~~~~~~~l~  363 (570)
                                           ..+++++|+++|++++    ++|..|+||||+|+..++.+.  .++..|          
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN----~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~G----------  475 (661)
T PHA02917        410 CYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDIN----MIDKRGETLLHKAVRYNKQSLVSLLLESG----------  475 (661)
T ss_pred             chhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCC----CCCCCCcCHHHHHHHcCCHHHHHHHHHCc----------
Confidence                                 3567899999999998    499999999999998876542  223333          


Q ss_pred             hHHHhhhhcCchhhhhhccCCCCcchhhhh
Q 008328          364 WFKEIEKVVQPSYREAKNSEGRTPHILFSE  393 (570)
Q Consensus       364 ~~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~  393 (570)
                                 ++.+.+|..|+|||++|..
T Consensus       476 -----------Adin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        476 -----------SDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             -----------CCCCCCCCCCCCHHHHHHH
Confidence                       4558999999999999985

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-42  Score=364.67  Aligned_cols=276  Identities=14%  Similarity=0.122  Sum_probs=179.8

Q ss_pred             HHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcC---CHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           23 HLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR---RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        23 h~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      ..++..++.++++.|++. +.+++.+ +..|.||||+|+..|   +.+++++|++  .|+++|.+|..|.||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~-ga~vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA-GADVNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc-CCCcccC-CCCCCCHHHHHHHhcCCChHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcC
Confidence            455667777777777754 5556665 677777777777777   7777777777  67777777777777777777777


Q ss_pred             -cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH--HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC--cHHHHHHH
Q 008328          100 -VTKIAEVMVNKNRELPSIRGNKGATPLCMAA--LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG--LYDVALDL  174 (570)
Q Consensus       100 -~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~L  174 (570)
                       +.+++++|+++|++++ .+|..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.++++.|
T Consensus        95 ~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         95 TTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence             4777777777777766 57777777777777  445677777777777777777777777777777654  46777777


Q ss_pred             HhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccch
Q 008328          175 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  254 (570)
Q Consensus       175 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~  254 (570)
                      +++|++.. ..|..|+||||+++.....     ..++++.|                                ...|+++
T Consensus       174 l~~g~~~~-~~d~~g~t~Lh~~~~~~~~-----~~~i~~~L--------------------------------l~~g~~~  215 (471)
T PHA03095        174 IDAGADVY-AVDDRFRSLLHHHLQSFKP-----RARIVREL--------------------------------IRAGCDP  215 (471)
T ss_pred             HHcCCCCc-ccCCCCCCHHHHHHHHCCC-----cHHHHHHH--------------------------------HHcCCCC
Confidence            77777764 4477777777777754321     12222222                                2235555


Q ss_pred             hhhccCCChHHHHHHHcCcH--HHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCC
Q 008328          255 GELLRKPSRLLFTAVELGNV--EFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN  332 (570)
Q Consensus       255 ~~~d~~g~tpLh~A~~~g~~--~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G  332 (570)
                      +.+|..|.||||+|+..|+.  .+++.|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|++++.    +|.+|
T Consensus       216 ~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~----~~~~g  290 (471)
T PHA03095        216 AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGADINA----VSSDG  290 (471)
T ss_pred             cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCC
Confidence            55566666666666665543  355555555655 444455666666666666666666666666665553    55666


Q ss_pred             CcHHHHhhhhCCCC
Q 008328          333 NNMLHLAGKLAPPD  346 (570)
Q Consensus       333 ~TpLh~A~~~~~~~  346 (570)
                      +||||+|+..++.+
T Consensus       291 ~tpl~~A~~~~~~~  304 (471)
T PHA03095        291 NTPLSLMVRNNNGR  304 (471)
T ss_pred             CCHHHHHHHhCCHH
Confidence            66666666655554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.2e-42  Score=364.93  Aligned_cols=325  Identities=13%  Similarity=0.058  Sum_probs=245.8

Q ss_pred             cccCCCCCChHHHHH-----HHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHh--cCCHHHHHHHHHccCcccccc
Q 008328           11 VERNCFTSYAPLHLA-----ALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG--ARRTLFVQELVNLMTPEDLAL   83 (570)
Q Consensus        11 ~~~~d~~g~t~Lh~A-----a~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~   83 (570)
                      .+..+..+..+++..     .+.++.+++++|++.+..+++.+.|..|+||||.|+.  +++.+++++|++  .|++++.
T Consensus       130 ~~~~~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe--~GADVN~  207 (764)
T PHA02716        130 FDIPNNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN--NGVNVNL  207 (764)
T ss_pred             hcCCCcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH--cCCCCCC
Confidence            344444555666654     4568999999999875367776657889999999875  467999999999  8999999


Q ss_pred             cccCCChHHHHHHHcCc--HHHHHHHHhcCCCCCCcCCCCCCcHHHHH--------------------------------
Q 008328           84 RNKVGNTALCFAAVSGV--TKIAEVMVNKNRELPSIRGNKGATPLCMA--------------------------------  129 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A--------------------------------  129 (570)
                      +|..|.||||+|++.|+  .+++++|+++|++++ .+|..|+||||+|                                
T Consensus       208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN-~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~  286 (764)
T PHA02716        208 QNNHLITPLHTYLITGNVCASVIKKIIELGGDMD-MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILH  286 (764)
T ss_pred             CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhH
Confidence            99999999999999995  599999999999998 6999999999975                                


Q ss_pred             -----HHcCCHHHHHHHhhccCCccccccchhhHHHHHHH--hCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCc
Q 008328          130 -----ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID--AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSA  202 (570)
Q Consensus       130 -----~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~  202 (570)
                           ++.|+.+++++|+++|++++.+|.+|+||||+|+.  .++.+++++|+++|+++ +.+|..|+||||+|+.....
T Consensus       287 ~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav  365 (764)
T PHA02716        287 SYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSV  365 (764)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhh
Confidence                 44578899999999999999999999999998764  46789999999999988 68999999999998753110


Q ss_pred             -------cccCCchhhhhhhhhcCccc--hhccchhhhHHHH---HH-HHHHHHHHHHhcCccchhhh--------ccCC
Q 008328          203 -------FASGSQLGFWRRCIYSVPGM--RAILDPKLMHLQA---LE-LVKRLWEQVLLLDDSKIGEL--------LRKP  261 (570)
Q Consensus       203 -------~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lh~~~---~~-~~~~l~~~~l~~~~~~~~~~--------d~~g  261 (570)
                             .....+.++++.|+..+.++  .+..|.||+|.++   .+ ....++ +.|...++.....        +..+
T Consensus       366 ~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIv-klLis~~~~~~~~~~~~q~ll~~~d  444 (764)
T PHA02716        366 VNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDII-DCLISDKVLNMVKHRILQDLLIRVD  444 (764)
T ss_pred             hccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHH-HHHHhCcchhhhhhhhhhhhhhccC
Confidence                   00123678999999776654  5678899999422   11 112222 2233333322111        1223


Q ss_pred             ChH--HHHHHHcCcHHHH------------------HHHHHhCCcccccccCCCCchhHHHHHhCch-----HHHHHHHH
Q 008328          262 SRL--LFTAVELGNVEFL------------------MVLIQMYPNLIWKVDDHSRSMFHIAVVHRQE-----KIFNLIYE  316 (570)
Q Consensus       262 ~tp--Lh~A~~~g~~~~v------------------~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-----~iv~~Ll~  316 (570)
                      .+|  +|.++..++.+..                  ..++..+.+ .+..|..|+||||+|+..|+.     +++++|++
T Consensus       445 ~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~  523 (764)
T PHA02716        445 DTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS  523 (764)
T ss_pred             cchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh
Confidence            333  5556655443322                  233333444 456789999999999999877     45599999


Q ss_pred             hCchhhhhhhhcccCCCcHHHHhhhhCCC
Q 008328          317 LGAHKDLIASYKDENNNNMLHLAGKLAPP  345 (570)
Q Consensus       317 ~g~~~~~~~n~~d~~G~TpLh~A~~~~~~  345 (570)
                      .|+++|.    +|++|+||||+|+++|+.
T Consensus       524 ~GADIN~----~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        524 IQYNINI----PTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             CCCCCcc----cCCCCCCHHHHHHHcCCc
Confidence            9999985    999999999999999976

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.5e-42  Score=364.25  Aligned_cols=276  Identities=20%  Similarity=0.158  Sum_probs=250.0

Q ss_pred             eccccCCcccCCCCCChHHHHHHHcC---CHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcC-CHHHHHHHHHccCcc
Q 008328            4 LKCLKGGVERNCFTSYAPLHLAALKG---DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR-RTLFVQELVNLMTPE   79 (570)
Q Consensus         4 l~~~~~~~~~~d~~g~t~Lh~Aa~~g---~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g-~~~~v~~Ll~~~~~~   79 (570)
                      |...|+++|.+|..|.||||+|+..|   +.++++.|++. +.+++.+ |..|+||||+|+..| +.+++++|++  .|+
T Consensus        33 Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~-~~~g~TpLh~A~~~~~~~~iv~lLl~--~ga  108 (471)
T PHA03095         33 LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIK--AGA  108 (471)
T ss_pred             HHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCcHHHHHHHHH--cCC
Confidence            34568999999999999999999999   99999988875 6778887 889999999999999 5999999999  899


Q ss_pred             cccccccCCChHHHHHH--HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcC--CHHHHHHHhhccCCccccccch
Q 008328           80 DLALRNKVGNTALCFAA--VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG--HKEMIWYLYSVTKEEDLKEEDR  155 (570)
Q Consensus        80 ~~~~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g  155 (570)
                      +++.+|..|+||||+|+  ..++.+++++|+++|++++ .+|..|.||||+|+..+  +.+++++|+++|++++..+..|
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g  187 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF  187 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCC
Confidence            99999999999999999  5568999999999999988 69999999999999876  6899999999999999999999


Q ss_pred             hhHHHHHHHh--CcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHH
Q 008328          156 IELLVAVIDA--GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHL  233 (570)
Q Consensus       156 ~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~  233 (570)
                      .||||.++..  ++.++++.|++.|+++ +.+|..|+||||+|+..++..                              
T Consensus       188 ~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~------------------------------  236 (471)
T PHA03095        188 RSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCK------------------------------  236 (471)
T ss_pred             CCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCch------------------------------
Confidence            9999999975  7889999999999998 699999999999999887410                              


Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHH
Q 008328          234 QALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNL  313 (570)
Q Consensus       234 ~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~  313 (570)
                        ...+     ..+...+.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+.++++.
T Consensus       237 --~~~v-----~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~  308 (471)
T PHA03095        237 --RSLV-----LPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRA  308 (471)
T ss_pred             --HHHH-----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHH
Confidence              1122     234456999999999999999999999999999999999999 67889999999999999999999999


Q ss_pred             HHHhCchhhh
Q 008328          314 IYELGAHKDL  323 (570)
Q Consensus       314 Ll~~g~~~~~  323 (570)
                      |++.+++++.
T Consensus       309 LL~~~~~~~~  318 (471)
T PHA03095        309 ALAKNPSAET  318 (471)
T ss_pred             HHHhCCCHHH
Confidence            9999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-41  Score=353.12  Aligned_cols=288  Identities=16%  Similarity=0.155  Sum_probs=249.1

Q ss_pred             ccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHcc--------
Q 008328            5 KCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM--------   76 (570)
Q Consensus         5 ~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~--------   76 (570)
                      +..+..++..+.+|.||||.|++.|+.++|++|++. +.+++.. +..|.||||+|+..|+.+++++|++..        
T Consensus        22 ~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~-~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~   99 (434)
T PHA02874         22 KNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHI-NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPI   99 (434)
T ss_pred             HcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchh
Confidence            344566788899999999999999999999999975 5667766 889999999999999999999999821        


Q ss_pred             -------------CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhh
Q 008328           77 -------------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS  143 (570)
Q Consensus        77 -------------~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~  143 (570)
                                   .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++
T Consensus       100 ~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~  178 (434)
T PHA02874        100 PCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLE  178 (434)
T ss_pred             ccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence                         234677889999999999999999999999999999987 689999999999999999999999999


Q ss_pred             ccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccch
Q 008328          144 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR  223 (570)
Q Consensus       144 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~  223 (570)
                      +|++++..+..|.||||+|+..|+.+++++|++.|++. +.++..|.||||.|+..+.                      
T Consensus       179 ~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~----------------------  235 (434)
T PHA02874        179 KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR----------------------  235 (434)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh----------------------
Confidence            99999999999999999999999999999999999987 5889999999999998752                      


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcC-cHHHHHHHHHhCCcccccccCCCCchhHHH
Q 008328          224 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELG-NVEFLMVLIQMYPNLIWKVDDHSRSMFHIA  302 (570)
Q Consensus       224 ~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  302 (570)
                                   +.+..+      ..+.+++.+|..|.||||+|+..+ +.+++++|+++|++ .+.+|..|+||||+|
T Consensus       236 -------------~~i~~L------l~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad-~n~~d~~g~TpL~~A  295 (434)
T PHA02874        236 -------------SAIELL------INNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTA  295 (434)
T ss_pred             -------------HHHHHH------HcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC-CCCCCCCCCCHHHHH
Confidence                         111111      147788999999999999999976 89999999999999 678899999999999


Q ss_pred             HHhC-chHHHHHHHHhCchhhhhhhhcccCC-CcHHHHhhhh
Q 008328          303 VVHR-QEKIFNLIYELGAHKDLIASYKDENN-NNMLHLAGKL  342 (570)
Q Consensus       303 ~~~~-~~~iv~~Ll~~g~~~~~~~n~~d~~G-~TpLh~A~~~  342 (570)
                      +.++ +.++++.|++.+...+-    .+..+ .+++..+...
T Consensus       296 ~~~~~~~~~ik~ll~~~~~~~~----~~~~~~~~~~~~~~i~  333 (434)
T PHA02874        296 FKYINKDPVIKDIIANAVLIKE----ADKLKDSDFLEHIEIK  333 (434)
T ss_pred             HHhCCccHHHHHHHHhcCchhh----ccccchhHHHHHHHHh
Confidence            9987 77899999999877653    44433 5556555433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-41  Score=357.51  Aligned_cols=271  Identities=21%  Similarity=0.203  Sum_probs=246.1

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHH-----HHhcCCHHHHHHHHHccCcccccc
Q 008328            9 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHI-----AAGARRTLFVQELVNLMTPEDLAL   83 (570)
Q Consensus         9 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~-----A~~~g~~~~v~~Ll~~~~~~~~~~   83 (570)
                      ...+..+..+.||||.|++.|+.++|+.|++. +.+++.. +..|.||||+     |+..|+.+++++|++  .|++++.
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~--~ga~i~~  101 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANVNA  101 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHHHHHH--CCCCCCC
Confidence            45567788999999999999999999999986 5667766 7889999999     999999999999999  8999999


Q ss_pred             cccCCChHHHHHH--HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcC--CHHHHHHHhhccCCccccccchhhHH
Q 008328           84 RNKVGNTALCFAA--VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG--HKEMIWYLYSVTKEEDLKEEDRIELL  159 (570)
Q Consensus        84 ~d~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L  159 (570)
                      .|..|.||||+|+  ..|+.+++++|+++|++++ ..+..|.||||+|+..|  +.+++++|+++|++++.++..|.|||
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL  180 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPL  180 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHH
Confidence            9999999999999  9999999999999999987 68999999999999999  99999999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHhhCcccccccCCCC------CcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHH
Q 008328          160 VAVIDAGLYDVALDLIQHHPQLAMARDGNG------ETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHL  233 (570)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g------~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~  233 (570)
                      |+|+..|+.+++++|+++|+++ +..+..|      .||||.|+..++.     ..                        
T Consensus       181 ~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~-----~~------------------------  230 (480)
T PHA03100        181 HIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEI-----TL------------------------  230 (480)
T ss_pred             HHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcC-----cH------------------------
Confidence            9999999999999999999998 5788888      8899999887641     12                        


Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHH
Q 008328          234 QALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNL  313 (570)
Q Consensus       234 ~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~  313 (570)
                         +.++.+     ...|++++.+|..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+..++.+++++
T Consensus       231 ---~iv~~L-----l~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~~  301 (480)
T PHA03100        231 ---EVVNYL-----LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKL  301 (480)
T ss_pred             ---HHHHHH-----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHHH
Confidence               233333     334888999999999999999999999999999999998 67889999999999999999999999


Q ss_pred             HHHhCchhhh
Q 008328          314 IYELGAHKDL  323 (570)
Q Consensus       314 Ll~~g~~~~~  323 (570)
                      |+++|++++.
T Consensus       302 Ll~~g~~i~~  311 (480)
T PHA03100        302 LLNNGPSIKT  311 (480)
T ss_pred             HHhcCCCHHH
Confidence            9999999886

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=352.57  Aligned_cols=279  Identities=18%  Similarity=0.207  Sum_probs=247.2

Q ss_pred             CCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH-----HHHcCcHHH
Q 008328           29 GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF-----AAVSGVTKI  103 (570)
Q Consensus        29 g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~-----A~~~g~~~i  103 (570)
                      ...++++++++. +...+.. +..+.||||.|++.|+.++|++|++  .|++++..+..|.||||+     |+..|+.++
T Consensus        13 ~~~~~~~~~~~~-~~~~~~~-~~~~~t~L~~A~~~~~~~ivk~Ll~--~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~i   88 (480)
T PHA03100         13 IKVKNIKYIIME-DDLNDYS-YKKPVLPLYLAKEARNIDVVKILLD--NGADINSSTKNNSTPLHYLSNIKYNLTDVKEI   88 (480)
T ss_pred             HHHHHHHHHHhc-Cccchhh-hcccchhhhhhhccCCHHHHHHHHH--cCCCCCCccccCcCHHHHHHHHHHHhhchHHH
Confidence            345677778865 3334333 8899999999999999999999999  899999999999999999     999999999


Q ss_pred             HHHHHhcCCCCCCcCCCCCCcHHHHHH--HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC--cHHHHHHHHhhCc
Q 008328          104 AEVMVNKNRELPSIRGNKGATPLCMAA--LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG--LYDVALDLIQHHP  179 (570)
Q Consensus       104 v~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~  179 (570)
                      +++|+++|++++ ..|..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.++++.|+++|+
T Consensus        89 v~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~  167 (480)
T PHA03100         89 VKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGV  167 (480)
T ss_pred             HHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCC
Confidence            999999999995 79999999999999  999999999999999999999999999999999999  9999999999999


Q ss_pred             ccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhcc
Q 008328          180 QLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR  259 (570)
Q Consensus       180 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~  259 (570)
                      ++ +.+|..|.||||+|+..|+       .++++.|+.                                .|++++..+.
T Consensus       168 di-n~~d~~g~tpL~~A~~~~~-------~~iv~~Ll~--------------------------------~ga~~~~~~~  207 (480)
T PHA03100        168 DI-NAKNRYGYTPLHIAVEKGN-------IDVIKFLLD--------------------------------NGADINAGDI  207 (480)
T ss_pred             Cc-ccccCCCCCHHHHHHHhCC-------HHHHHHHHH--------------------------------cCCCccCCCC
Confidence            98 6889999999999999884       344433332                                3667777777


Q ss_pred             CC------ChHHHHHHHcCc--HHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccC
Q 008328          260 KP------SRLLFTAVELGN--VEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDEN  331 (570)
Q Consensus       260 ~g------~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~  331 (570)
                      .|      .||||.|+..|+  .+++++|+++|++ .+.+|..|+||||+|+..++.+++++|++.|++++.    +|..
T Consensus       208 ~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~----~d~~  282 (480)
T PHA03100        208 ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL----VNKY  282 (480)
T ss_pred             CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc----cCCC
Confidence            77      899999999999  9999999999999 677899999999999999999999999999999985    9999


Q ss_pred             CCcHHHHhhhhCCCCc--cccCCchhhh
Q 008328          332 NNNMLHLAGKLAPPDR--LKIDSGAALQ  357 (570)
Q Consensus       332 G~TpLh~A~~~~~~~~--~~~~~ga~~~  357 (570)
                      |+||||+|++.++.+.  .++..|++++
T Consensus       283 g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        283 GDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            9999999999988773  3455566554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3e-41  Score=363.97  Aligned_cols=354  Identities=22%  Similarity=0.227  Sum_probs=215.1

Q ss_pred             eeccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc
Q 008328            3 LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA   82 (570)
Q Consensus         3 ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~   82 (570)
                      ++...|++++..|..|.||||.|+..|+.++++.++.+ +..++.. +..|.||||.|++.+..+++++|++  +|+++.
T Consensus       227 Lll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~-ga~~~~~-~vr~~tplh~AA~~~~~e~~~~ll~--~ga~~~  302 (1143)
T KOG4177|consen  227 LLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQH-GASVNVS-TVRGETPLHMAARAGQVEVCKLLLQ--NGADVL  302 (1143)
T ss_pred             eeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhc-ccccCcc-cccccCcchhhhccchhhhHhhhhc--cCcccc
Confidence            45566777777777777777777777777777766654 4445554 6677777777777777777777777  677766


Q ss_pred             ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHH
Q 008328           83 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus        83 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      .++....||+|.|.+.|+.++++.+++.++..+ ..+..|.||||+++..++.++..+|...+.+-...++.|.||+|.|
T Consensus       303 ~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~-aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la  381 (1143)
T KOG4177|consen  303 AKARDDQTPLHIASRLGHEEIVHLLLQAGATPN-AARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLA  381 (1143)
T ss_pred             cccccccChhhhhcccchHHHHHHHhhccCCcc-ccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhh
Confidence            666666666666666666666666666665554 3455555555555555555555555555554445555555566666


Q ss_pred             HHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh--cCccchhccchhhhHHHHHHHHH
Q 008328          163 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY--SVPGMRAILDPKLMHLQALELVK  240 (570)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~lh~~~~~~~~  240 (570)
                      +..|..+++++++++|.+. +..+.+|.||||.|+..++       ..+++.++.  +.++..+..|.|++|.++.....
T Consensus       382 ~~~g~~~~v~Lll~~ga~~-~~~gk~gvTplh~aa~~~~-------~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~  453 (1143)
T KOG4177|consen  382 VKSGRVSVVELLLEAGADP-NSAGKNGVTPLHVAAHYGN-------PRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRY  453 (1143)
T ss_pred             cccCchhHHHhhhhccCCc-ccCCCCCcceeeehhhccC-------cceEEEEeccCCChhhHhhcCCChhhhhhhcccH
Confidence            6666666666666666654 4556666666666665553       233333332  33444556666666666655422


Q ss_pred             HHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhC---------------------------------Ccc
Q 008328          241 RLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMY---------------------------------PNL  287 (570)
Q Consensus       241 ~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~---------------------------------~~~  287 (570)
                      ......+...+.+++.....|.||||+|++.|+.++++.|++.+                                 ++ 
T Consensus       454 ~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-  532 (1143)
T KOG4177|consen  454 LQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-  532 (1143)
T ss_pred             hhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc-
Confidence            22223344456666666666666666666666655555555543                                 22 


Q ss_pred             cccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc--cccCCchhhhhhHhhhhH
Q 008328          288 IWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWF  365 (570)
Q Consensus       288 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~--~~~~~ga~~~~~~~l~~~  365 (570)
                      .+.++..|.||||+|+.+|+.++|++|+++|+|++    ++|+.|+||||.|+..|+.++  +++..|+           
T Consensus       533 v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~----ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA-----------  597 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN----AKDKLGYTPLHQAAQQGHNDIAELLLKHGA-----------  597 (1143)
T ss_pred             eehhcccccchHHHHHhcCCchHHHHhhhCCcccc----ccCCCCCChhhHHHHcChHHHHHHHHHcCC-----------
Confidence            23445566677777777777777777777777776    377777777777777775542  2233333           


Q ss_pred             HHhhhhcCchhhhhhccCCCCcchhhhhhh
Q 008328          366 KEIEKVVQPSYREAKNSEGRTPHILFSEEH  395 (570)
Q Consensus       366 ~~~~~~~~~~~~~~~n~~G~Tpl~~a~~~~  395 (570)
                                .+|..|.+|.|||++|....
T Consensus       598 ----------~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  598 ----------SVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             ----------CCCcccccCcchhHHHHHhc
Confidence                      33666667777776666543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=346.71  Aligned_cols=334  Identities=10%  Similarity=0.069  Sum_probs=253.1

Q ss_pred             eccccCCcccCCCCCChHHHHHHHcCCH-----------------------------------HHHHHHHhcCccchhhc
Q 008328            4 LKCLKGGVERNCFTSYAPLHLAALKGDW-----------------------------------DFARNFFNLNPEAVCVR   48 (570)
Q Consensus         4 l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~-----------------------------------~~v~~ll~~~~~~~~~~   48 (570)
                      |...|++++..|..|+||||.|+..|+.                                   ++|+.|++ .+.+++.+
T Consensus        54 Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~-~Gadin~~  132 (661)
T PHA02917         54 LLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVE-HGFDLSVK  132 (661)
T ss_pred             HHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHH-cCCCCCcc
Confidence            4457899999999999999988887763                                   33333332 24556666


Q ss_pred             cCCCCCcHHHHHH--hcCCHHHHHHHHHccCccccccccc---CC-----------ChHHHHHHH-----------cCcH
Q 008328           49 ISRNQDTALHIAA--GARRTLFVQELVNLMTPEDLALRNK---VG-----------NTALCFAAV-----------SGVT  101 (570)
Q Consensus        49 ~~~~g~TpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~d~---~g-----------~TpLh~A~~-----------~g~~  101 (570)
                       |.+|+||||+|+  ..|+.+++++|++  +|++++.+|.   .|           .||||+|+.           .++.
T Consensus       133 -d~~g~T~L~~~~a~~~~~~eivklLi~--~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~  209 (661)
T PHA02917        133 -CENHRSVIENYVMTDDPVPEIIDLFIE--NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP  209 (661)
T ss_pred             -CCCCccHHHHHHHccCCCHHHHHHHHH--cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcH
Confidence             789999999654  5789999999999  8999987654   34           599999986           4689


Q ss_pred             HHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH--HHHHHHhhccCCcc----ccccchhhHHHHHHHh---------C
Q 008328          102 KIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK--EMIWYLYSVTKEED----LKEEDRIELLVAVIDA---------G  166 (570)
Q Consensus       102 ~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~--~~v~~Ll~~g~~~~----~~~~~g~t~L~~A~~~---------~  166 (570)
                      +++++|+++|++++ .+|.+|.||||+|+.+|+.  |+|++|++ |++++    ..+..+.+|+|+|+.-         .
T Consensus       210 eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v  287 (661)
T PHA02917        210 EVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDV  287 (661)
T ss_pred             HHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccc
Confidence            99999999999998 6999999999999999985  79999975 88765    4566788888888842         2


Q ss_pred             cHHHHHHHHhhCcccc------ccc------------CCCCCcHHHHHHc---CCCccccCCchhhhhhhhhcCccch--
Q 008328          167 LYDVALDLIQHHPQLA------MAR------------DGNGETALHVLAR---KPSAFASGSQLGFWRRCIYSVPGMR--  223 (570)
Q Consensus       167 ~~~~~~~Ll~~~~~~~------~~~------------d~~g~tpLh~A~~---~~~~~~~~~~~~~~~~l~~~~~~~~--  223 (570)
                      +.++++.|++.|++..      +..            +..+.+++|.+..   .|.     ...++++.|+..++++.  
T Consensus       288 ~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-----~~~~~v~~Ll~~GAdvn~~  362 (661)
T PHA02917        288 DLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGD-----IDIPLVECMLEYGAVVNKE  362 (661)
T ss_pred             hHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCC-----CcHHHHHHHHHcCCCCCCC
Confidence            7799999999997531      111            2234445554442   332     14679999998877654  


Q ss_pred             hccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcC-----------------------cHHHHHHH
Q 008328          224 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELG-----------------------NVEFLMVL  280 (570)
Q Consensus       224 ~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g-----------------------~~~~v~~L  280 (570)
                      +..|.++..    ......++.++...|++++..+.+|.||||.|++.+                       ..++++.|
T Consensus       363 ~~~g~~~~~----~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L  438 (661)
T PHA02917        363 AIHGYFRNI----NIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINIC  438 (661)
T ss_pred             Cccccchhh----cCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHH
Confidence            444544332    222234444455568888888888999999998543                       35688999


Q ss_pred             HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhh-hCCCC--ccccCCchhhh
Q 008328          281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK-LAPPD--RLKIDSGAALQ  357 (570)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~-~~~~~--~~~~~~ga~~~  357 (570)
                      +++|++ ++.+|..|+||||+|+..++.+++++|+++|++++.    +|..|+||||+|+. .++.+  .+.+..|++++
T Consensus       439 l~~GAd-IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~----~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        439 LPYLKD-INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNI----RSNNGYTCIAIAINESRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             HHCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCC----CCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChh
Confidence            999999 678899999999999999999999999999999984    99999999999996 44444  34455565553

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-39  Score=339.14  Aligned_cols=277  Identities=14%  Similarity=0.098  Sum_probs=228.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChH
Q 008328           12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA   91 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp   91 (570)
                      +..+..+.||||.||+.|+.++|+.|++. +.+++.+ |.+|+||||+||..|+.++++.|++  .+.+.+.  ..+.+|
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~--~~~~~~~--~~~~~~  104 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIR--SINKCSV--FYTLVA  104 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHCccHhHHHHHHH--HHhcccc--ccchhh
Confidence            34456789999999999999999999986 5677777 8999999999999999999999999  4444433  567899


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc--CCHHHHHHHhhccCCccccccc-hhhHHHHHHHhCcH
Q 008328           92 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL--GHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLY  168 (570)
Q Consensus        92 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~  168 (570)
                      +|.|+..|+.++++.|+..+.+.....+   ...+..+...  .+.+++++|+++|++++..+.. |.||||+|+..|+.
T Consensus       105 l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~  181 (477)
T PHA02878        105 IKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQ  181 (477)
T ss_pred             HHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCH
Confidence            9999999999999999988654321111   1111111112  2356999999999999999999 99999999999999


Q ss_pred             HHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHh
Q 008328          169 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLL  248 (570)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~  248 (570)
                      +++++|++.|+++ +.+|..|+||||.|++.++       .                           +.++.++     
T Consensus       182 ~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~-------~---------------------------~iv~~Ll-----  221 (477)
T PHA02878        182 RLTELLLSYGANV-NIPDKTNNSPLHHAVKHYN-------K---------------------------PIVHILL-----  221 (477)
T ss_pred             HHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCC-------H---------------------------HHHHHHH-----
Confidence            9999999999998 6899999999999999875       2                           3333333     


Q ss_pred             cCccchhhhccCCChHHHHHHHc-CcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhh
Q 008328          249 LDDSKIGELLRKPSRLLFTAVEL-GNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY  327 (570)
Q Consensus       249 ~~~~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~  327 (570)
                      ..|++++.+|..|.||||+|+.. ++.+++++|+++|+++....+..|+||||+|  .++.+++++|+++|+|++.    
T Consensus       222 ~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~----  295 (477)
T PHA02878        222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS----  295 (477)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC----
Confidence            34889999999999999999976 7999999999999995444334899999999  5778999999999999985    


Q ss_pred             cccCCCcHHHHhhhhC
Q 008328          328 KDENNNNMLHLAGKLA  343 (570)
Q Consensus       328 ~d~~G~TpLh~A~~~~  343 (570)
                      +|.+|+||||+|++.+
T Consensus       296 ~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        296 LNSYKLTPLSSAVKQY  311 (477)
T ss_pred             cCCCCCCHHHHHHHHc
Confidence            9999999999999854

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.2e-39  Score=334.83  Aligned_cols=342  Identities=9%  Similarity=0.010  Sum_probs=264.6

Q ss_pred             eccccCCcccCCCCCChHHHHHHHcC--CHHHHHHHHhcCc-cchhhccCCCCCcHHHHHHh--cCCHHHHHHHHHccCc
Q 008328            4 LKCLKGGVERNCFTSYAPLHLAALKG--DWDFARNFFNLNP-EAVCVRISRNQDTALHIAAG--ARRTLFVQELVNLMTP   78 (570)
Q Consensus         4 l~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~~~v~~ll~~~~-~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~~~~   78 (570)
                      |..+|++++.+|.+|+||||+|+..|  +.|+|+.|++.+. .+++.. +..+++|||.++.  +++.++|++|++. .+
T Consensus        63 LLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-~~~~d~~l~~y~~s~n~~~~~vk~Li~~-~~  140 (672)
T PHA02730         63 LLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT-SNINDFDLYSYMSSDNIDLRLLKYLIVD-KR  140 (672)
T ss_pred             HHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc-cccCCchHHHHHHhcCCcHHHHHHHHHh-cC
Confidence            45689999999999999999999977  7999999998742 334444 7779999999998  9999999999963 56


Q ss_pred             cccccccc-----CCChHHHHHHHcCcHHHHHHHHhcCCCCCCc------CCCCCC-cHHHHH------HHcCCHHHHHH
Q 008328           79 EDLALRNK-----VGNTALCFAAVSGVTKIAEVMVNKNRELPSI------RGNKGA-TPLCMA------ALLGHKEMIWY  140 (570)
Q Consensus        79 ~~~~~~d~-----~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~------~~~~g~-TpLh~A------~~~g~~~~v~~  140 (570)
                      .+++..++     .|.+|++++...++.|+|++|+++|++++..      .+..+. |.||++      ..+++.|++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~l  220 (672)
T PHA02730        141 IRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKC  220 (672)
T ss_pred             CChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHH
Confidence            78776533     7899999999999999999999999998521      333444 555644      35678999999


Q ss_pred             HhhccCCccccccchhhHHHH--HHHhCcHHHHHHHHh--------------------------------hCcccccc--
Q 008328          141 LYSVTKEEDLKEEDRIELLVA--VIDAGLYDVALDLIQ--------------------------------HHPQLAMA--  184 (570)
Q Consensus       141 Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~--------------------------------~~~~~~~~--  184 (570)
                      |+++|+++|.+|.+|.||||+  +...++.|++++|++                                +|.+.. .  
T Consensus       221 LIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~  299 (672)
T PHA02730        221 LIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDME-IVN  299 (672)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchH-HHH
Confidence            999999999999999999995  555677999999999                                455541 2  


Q ss_pred             ------------------cCCCCCc---------------------HHHHHHcCCCccccCCchhhhhhhhhcCccch-h
Q 008328          185 ------------------RDGNGET---------------------ALHVLARKPSAFASGSQLGFWRRCIYSVPGMR-A  224 (570)
Q Consensus       185 ------------------~d~~g~t---------------------pLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  224 (570)
                                        .+..|.+                     .||.=.+.+.    .-..++++.|+..++++. .
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~----~v~ieIvelLIs~GAdIN~k  375 (672)
T PHA02730        300 LLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD----MVSIPILRCMLDNGATMDKT  375 (672)
T ss_pred             HHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC----cCcHHHHHHHHHCCCCCCcC
Confidence                              3445543                     3444444331    126899999998877653 2


Q ss_pred             ccchhhhHHHHHHHH----HHHHHHHHhcCcc--chhhhccCCChHHHH---HHHcC---------cHHHHHHHHHhCCc
Q 008328          225 ILDPKLMHLQALELV----KRLWEQVLLLDDS--KIGELLRKPSRLLFT---AVELG---------NVEFLMVLIQMYPN  286 (570)
Q Consensus       225 ~~~~~~lh~~~~~~~----~~l~~~~l~~~~~--~~~~~d~~g~tpLh~---A~~~g---------~~~~v~~Ll~~~~~  286 (570)
                      ..|.||||.++....    ...+ ++|...|+  +++.+|..|.||||.   |...+         ..+++++|+++|++
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIv-elLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD  454 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVV-RFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD  454 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHH-HHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc
Confidence            578899998876542    2333 34445565  689999999999994   33332         23679999999999


Q ss_pred             ccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhccc-CCCcHHHHhhhh--CCCC--ccccCCchhhhh
Q 008328          287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDE-NNNNMLHLAGKL--APPD--RLKIDSGAALQL  358 (570)
Q Consensus       287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~-~G~TpLh~A~~~--~~~~--~~~~~~ga~~~~  358 (570)
                       ++.+|..|+||||+|+..++.+++++|+++|++++.    +|. .|+||||+|+..  ++.+  .+++..|+.++.
T Consensus       455 -INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~----~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        455 -IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT----TSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             -hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC----CCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHHH
Confidence             678899999999999999999999999999999984    886 699999999874  3333  455666776653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9e-39  Score=338.15  Aligned_cols=278  Identities=15%  Similarity=0.166  Sum_probs=201.1

Q ss_pred             eccccCCcccCCCCCChHHHHHHHcC--CHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcC------CHHHHHHHHHc
Q 008328            4 LKCLKGGVERNCFTSYAPLHLAALKG--DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR------RTLFVQELVNL   75 (570)
Q Consensus         4 l~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g------~~~~v~~Ll~~   75 (570)
                      |...|+++|.. .+|.||||.++..+  +.++|+.|++. |.+++.+ + .+.||||.|+.++      +.+++++|++ 
T Consensus        22 LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~-   96 (494)
T PHA02989         22 LLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYK-G-YIETPLCAVLRNREITSNKIKKIVKLLLK-   96 (494)
T ss_pred             HHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCC-C-CCCCcHHHHHhccCcchhhHHHHHHHHHH-
Confidence            33457777777 56777776555433  56777777764 5666654 3 4677887776643      4567777777 


Q ss_pred             cCcccccccccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc--CCHHHHHHHhhccCCccc
Q 008328           76 MTPEDLALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL--GHKEMIWYLYSVTKEEDL  150 (570)
Q Consensus        76 ~~~~~~~~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~~g~~~~~  150 (570)
                       +|+|+|.+|.+|.||||.|+..   |+.+++++|+++|++++..+|..|.||||+|+..  ++.+++++|+++|++++.
T Consensus        97 -~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989         97 -FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             -CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence             7777777777788888776654   5677788888888777335777778888777654  467778888888877776


Q ss_pred             -cccchhhHHHHHHHhC----cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhc
Q 008328          151 -KEEDRIELLVAVIDAG----LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAI  225 (570)
Q Consensus       151 -~~~~g~t~L~~A~~~~----~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  225 (570)
                       .+..|.||||.|++.+    +.+++++|+++|+++ +.+|..|.||||.++..+.....                    
T Consensus       176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~--------------------  234 (494)
T PHA02989        176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSK--------------------  234 (494)
T ss_pred             cccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcc--------------------
Confidence             5667778877776653    677788888777776 46677777777776654320000                    


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHh
Q 008328          226 LDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH  305 (570)
Q Consensus       226 ~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  305 (570)
                              ...+.++.      ...+++++.+|..|.||||+|+..|+.+++++|+++|+| ++.+|..|+||||+|+.+
T Consensus       235 --------~~~~il~~------l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        235 --------KEFKVLNF------ILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             --------cchHHHHH------HHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence                    00112221      224689999999999999999999999999999999999 677799999999999999


Q ss_pred             CchHHHHHHHHhCchhhh
Q 008328          306 RQEKIFNLIYELGAHKDL  323 (570)
Q Consensus       306 ~~~~iv~~Ll~~g~~~~~  323 (570)
                      ++.++++.|++.++..+.
T Consensus       300 ~~~~iv~~LL~~~p~~~~  317 (494)
T PHA02989        300 GNIDMLNRILQLKPGKYL  317 (494)
T ss_pred             CCHHHHHHHHhcCCChHH
Confidence            999999999998765543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-39  Score=339.18  Aligned_cols=299  Identities=15%  Similarity=0.081  Sum_probs=232.9

Q ss_pred             HHHHHHcCCHHHHHHHHhc---CccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHc
Q 008328           22 LHLAALKGDWDFARNFFNL---NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS   98 (570)
Q Consensus        22 Lh~Aa~~g~~~~v~~ll~~---~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~   98 (570)
                      |..+....+.+-+...++.   .+...+.. +..+.||||+|++.|+.++|++|++  .|++++.+|.+|.||||+||..
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~tPLh~A~~~g~~e~vk~Ll~--~gadvn~~d~~g~TpLh~A~~~   80 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSA-SLIPFIPLHQAVEARNLDVVKSLLT--RGHNVNQPDHRDLTPLHIICKE   80 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcc-cccCcchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHC
Confidence            4556666665444445443   11111112 4578999999999999999999999  8999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHh--CcHHHHHHHHh
Q 008328           99 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA--GLYDVALDLIQ  176 (570)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~  176 (570)
                      |+.++++.|++.+.+..   ...+.+|++.|+..++.++++.|+..+.+......  ...+......  ...++++.|++
T Consensus        81 g~~~~v~~Ll~~~~~~~---~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~  155 (477)
T PHA02878         81 PNKLGMKEMIRSINKCS---VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLS  155 (477)
T ss_pred             ccHhHHHHHHHHHhccc---cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHH
Confidence            99999999999877654   25788999999999999999999988654322111  1111111112  23469999999


Q ss_pred             hCcccccccCCC-CCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchh
Q 008328          177 HHPQLAMARDGN-GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIG  255 (570)
Q Consensus       177 ~~~~~~~~~d~~-g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~  255 (570)
                      +|+++ +.+|.+ |+||||+|+..|+       .                           +.++.++     ..|++++
T Consensus       156 ~gadi-n~~~~~~g~tpLh~A~~~~~-------~---------------------------~iv~~Ll-----~~gad~n  195 (477)
T PHA02878        156 YGADI-NMKDRHKGNTALHYATENKD-------Q---------------------------RLTELLL-----SYGANVN  195 (477)
T ss_pred             cCCCC-CccCCCCCCCHHHHHHhCCC-------H---------------------------HHHHHHH-----HCCCCCC
Confidence            99998 578888 9999999999885       3                           3333333     3488899


Q ss_pred             hhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHh-CchHHHHHHHHhCchhhhhhhhccc-CCC
Q 008328          256 ELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH-RQEKIFNLIYELGAHKDLIASYKDE-NNN  333 (570)
Q Consensus       256 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~iv~~Ll~~g~~~~~~~n~~d~-~G~  333 (570)
                      ..|..|.||||.|+..|+.++++.|++.|++ .+.+|..|+||||+|+.. ++.+++++|+++|++++.    ++. .|+
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~----~~~~~g~  270 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA----KSYILGL  270 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc----cCCCCCC
Confidence            9999999999999999999999999999999 677899999999999976 789999999999999985    665 899


Q ss_pred             cHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCCCCcchhhhhh
Q 008328          334 NMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSEE  394 (570)
Q Consensus       334 TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~~  394 (570)
                      ||||+|+.....-.+++..|                     ++++.+|.+|+||+++|.++
T Consensus       271 TpLh~A~~~~~~v~~Ll~~g---------------------adin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        271 TALHSSIKSERKLKLLLEYG---------------------ADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CHHHHHccCHHHHHHHHHCC---------------------CCCCCcCCCCCCHHHHHHHH
Confidence            99999953221112222333                     45589999999999999864

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1e-39  Score=352.14  Aligned_cols=335  Identities=22%  Similarity=0.234  Sum_probs=250.5

Q ss_pred             eeccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc
Q 008328            3 LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA   82 (570)
Q Consensus         3 ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~   82 (570)
                      ++...++.++..+.+|.||||.||+.+..++++++++. +.++... +....||+|+|.+.|+.++++.+++  .++.++
T Consensus       260 ~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~-ga~~~~~-~~~~kt~l~~a~~~g~~~i~~~~l~--~~~~~~  335 (1143)
T KOG4177|consen  260 LLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQN-GADVLAK-ARDDQTPLHIASRLGHEEIVHLLLQ--AGATPN  335 (1143)
T ss_pred             HHHhcccccCcccccccCcchhhhccchhhhHhhhhcc-Ccccccc-cccccChhhhhcccchHHHHHHHhh--ccCCcc
Confidence            34567889999999999999999999999999988865 5556555 7778888888888888888888888  677777


Q ss_pred             ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHH
Q 008328           83 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus        83 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      ..+..|.||||+++..++.++..+|.+.+++-. ..+..|.||+|.|+..|..+++++++++|++++.....|.||||.+
T Consensus       336 aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~a  414 (1143)
T KOG4177|consen  336 AARTAGYTPLHLAAKEGQVEVAGALLEHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVA  414 (1143)
T ss_pred             ccCcCCcccccHhhhhhhHHHHHHhhccccccC-cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeeh
Confidence            777777777777777777766666666665544 4566666666666666666666666666666666666666666666


Q ss_pred             HHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC-cc--------------------------ccCCchhhhhhh
Q 008328          163 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS-AF--------------------------ASGSQLGFWRRC  215 (570)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~-~~--------------------------~~~~~~~~~~~l  215 (570)
                      ...++.++++.+++++++. +..+..|.||+|+|+..+. ..                          ....+.++++.+
T Consensus       415 a~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll  493 (1143)
T KOG4177|consen  415 AHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLL  493 (1143)
T ss_pred             hhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHh
Confidence            6666666666666666655 4566666666666666552 00                          001134555555


Q ss_pred             hhcC--ccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccC
Q 008328          216 IYSV--PGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDD  293 (570)
Q Consensus       216 ~~~~--~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~  293 (570)
                      +...  .+.....+.+++|.+..+...... ..+...|.+++.++..|+||||.||..|++++|++|+++|+| .+.+|+
T Consensus       494 le~~~~~~~~~~~~l~~lhla~~~~~v~~~-~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~~  571 (1143)
T KOG4177|consen  494 LEGGANDNLDAKKGLTPLHLAADEDTVKVA-KILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKDK  571 (1143)
T ss_pred             hhcCCccCccchhccchhhhhhhhhhHHHH-HHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc-ccccCC
Confidence            5544  334455666777777755444333 334566899999999999999999999999999999999999 667789


Q ss_pred             CCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccc
Q 008328          294 HSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLK  349 (570)
Q Consensus       294 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~  349 (570)
                      .|+||||.|+..|+.+++++|+++|+++|.    .|.+|.||||+|+..|+.+.+.
T Consensus       572 ~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna----~d~~g~TpL~iA~~lg~~~~~k  623 (1143)
T KOG4177|consen  572 LGYTPLHQAAQQGHNDIAELLLKHGASVNA----ADLDGFTPLHIAVRLGYLSVVK  623 (1143)
T ss_pred             CCCChhhHHHHcChHHHHHHHHHcCCCCCc----ccccCcchhHHHHHhcccchhh
Confidence            999999999999999999999999999984    9999999999999999987544

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-38  Score=301.70  Aligned_cols=235  Identities=14%  Similarity=0.069  Sum_probs=192.1

Q ss_pred             cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHH
Q 008328           28 KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM  107 (570)
Q Consensus        28 ~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~L  107 (570)
                      .++.++++.|++. +.  +.+ |.+|+||||+|+..|+.+++++|++  .|++++.++  |+||||+|+..|+.+++++|
T Consensus         9 ~~~~~~~~~Lis~-~a--~~~-D~~G~TpLh~Aa~~g~~eiv~~Ll~--~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSSK-DA--FKA-DVHGHSALYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHhC-CC--CCC-CCCCCcHHHHHHHcCCHHHHHHHHH--CcCCCcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            4678888877765 33  233 8899999999999999999999999  788888764  78999999999999999999


Q ss_pred             HhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccch-hhHHHHHHHhCcHHHHHHHHhhCcccccccC
Q 008328          108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-IELLVAVIDAGLYDVALDLIQHHPQLAMARD  186 (570)
Q Consensus       108 l~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d  186 (570)
                      +++|++++ .+|..|+||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|++++++..   |
T Consensus        81 L~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d  156 (284)
T PHA02791         81 LFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---D  156 (284)
T ss_pred             HHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc---c
Confidence            99999987 689999999999999999999999999999999888887 589999999999999999999876542   3


Q ss_pred             -CCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChH-
Q 008328          187 -GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRL-  264 (570)
Q Consensus       187 -~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tp-  264 (570)
                       ..|.||||+|++.|+       .++                           ++.+     +..|++++.+|..|.|| 
T Consensus       157 ~~~g~TpLh~Aa~~g~-------~ei---------------------------v~lL-----L~~gAd~n~~d~~g~t~~  197 (284)
T PHA02791        157 LAILLSCIHITIKNGH-------VDM---------------------------MILL-----LDYMTSTNTNNSLLFIPD  197 (284)
T ss_pred             cccCccHHHHHHHcCC-------HHH---------------------------HHHH-----HHCCCCCCcccCCCCChH
Confidence             357888888888875       233                           3222     23377777778888876 


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchh
Q 008328          265 LFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  321 (570)
Q Consensus       265 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~  321 (570)
                      ||+|+..|+.+++++|+++|++ ++.+|..| |+|      ++.|++++|+++.++.
T Consensus       198 L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        198 IKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            8888888888888888888888 46667743 555      7788888888876554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-38  Score=325.07  Aligned_cols=247  Identities=17%  Similarity=0.169  Sum_probs=195.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV   97 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~   97 (570)
                      ++++||.|++.|+.++++.|++. +.+++.+ +.+|.||||+|+..|+.+++++|++  .|++++.++.++.||||.|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFE-IYDGISPIKLAMKFRDSEAIKLLMK--HGAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccCCCcccHHHHHHH
Confidence            46788888888888888888765 4556655 6678888888888888888888888  778888777788888888888


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      .|+.++++.|++.|++.....+..|.||||+|+..|+.+++++|+++|++++.++.+|.||||.|+..|+.++++.|+++
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            88888888888888776656677788888888888888888888888888888777788888888888887777777776


Q ss_pred             CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhh
Q 008328          178 HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL  257 (570)
Q Consensus       178 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~  257 (570)
                      ++++                                                                         +.+
T Consensus       158 g~~~-------------------------------------------------------------------------~~~  164 (413)
T PHA02875        158 KACL-------------------------------------------------------------------------DIE  164 (413)
T ss_pred             CCCC-------------------------------------------------------------------------CCC
Confidence            6554                                                                         233


Q ss_pred             ccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCC-CchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHH
Q 008328          258 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS-RSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML  336 (570)
Q Consensus       258 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpL  336 (570)
                      |..|.||||+|+..|+.+++++|+++|+++ +..+..| .||+|+|+..++.+++++|+++|+|+++. ...|.+|.|||
T Consensus       165 d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~-~~~~~~~~t~l  242 (413)
T PHA02875        165 DCCGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM-FMIEGEECTIL  242 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH-hhcCCCchHHH
Confidence            445666777777777889999999999995 4456665 58999999999999999999999999863 34688899999


Q ss_pred             HHhhhhC
Q 008328          337 HLAGKLA  343 (570)
Q Consensus       337 h~A~~~~  343 (570)
                      +.+....
T Consensus       243 ~~~~~~~  249 (413)
T PHA02875        243 DMICNMC  249 (413)
T ss_pred             HHHHhhc
Confidence            9987543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-39  Score=268.27  Aligned_cols=179  Identities=20%  Similarity=0.158  Sum_probs=161.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                      .+.++.+.+|+.....-++.++++.+..++.+.|.+|+||||+||..|+.+++++|+.. .+..+|.+|..|+||||.|+
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhh
Confidence            45788999999999999999999988788888677999999999999999999999974 78899999999999999999


Q ss_pred             HcCcHHHHHHHHhc-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHH
Q 008328           97 VSGVTKIAEVMVNK-NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI  175 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  175 (570)
                      ..|+.|+|+.|+.+ |++++ ..++.|+||||||+..|..|++++|+++|+.++.+|..|.||||.|+.-|..+++++|+
T Consensus        81 s~g~~evVk~Ll~r~~advn-a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVN-ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcc-eecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            99999999999999 99988 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCcccccccCCCCCcHHHHHHc
Q 008328          176 QHHPQLAMARDGNGETALHVLAR  198 (570)
Q Consensus       176 ~~~~~~~~~~d~~g~tpLh~A~~  198 (570)
                      ..++.+ +..|+.|+||||.|..
T Consensus       160 ~~~a~~-n~qDk~G~TpL~~al~  181 (226)
T KOG4412|consen  160 SQGAPL-NTQDKYGFTPLHHALA  181 (226)
T ss_pred             hcCCCC-CcccccCccHHHHHHh
Confidence            888766 5777777777777643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=328.95  Aligned_cols=280  Identities=17%  Similarity=0.177  Sum_probs=232.4

Q ss_pred             hHHHHHHH---cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhc--CCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           20 APLHLAAL---KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA--RRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        20 t~Lh~Aa~---~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      ++||.-+.   ..+.++|+.|++. |.+++.+  .+|.||||.++..  ++.++|++|++  +|+|+|.++ .+.||||.
T Consensus         2 ~~l~~y~~~~~~~~~~~v~~LL~~-GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~--~GAdvn~~~-~~~tpL~~   75 (494)
T PHA02989          2 SSLYEYILYSDTVDKNALEFLLRT-GFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLID--NGADVNYKG-YIETPLCA   75 (494)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHHc-CCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHH--cCCCccCCC-CCCCcHHH
Confidence            35554444   5789999999975 6778876  4689999876554  37899999999  899999887 67999999


Q ss_pred             HHHcC------cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc---CCHHHHHHHhhccCCc-cccccchhhHHHHHHH
Q 008328           95 AAVSG------VTKIAEVMVNKNRELPSIRGNKGATPLCMAALL---GHKEMIWYLYSVTKEE-DLKEEDRIELLVAVID  164 (570)
Q Consensus        95 A~~~g------~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  164 (570)
                      |+.++      +.+++++|+++|++++ .+|..|.||||.|+..   |+.+++++|+++|+|+ +.++..|.||||+|+.
T Consensus        76 a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         76 VLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             HHhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH
Confidence            98754      5789999999999998 6899999999988765   6799999999999999 8999999999999986


Q ss_pred             h--CcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHH
Q 008328          165 A--GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRL  242 (570)
Q Consensus       165 ~--~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l  242 (570)
                      .  ++.+++++|+++|+++....+..|.||||.|++.+..   ....                           +.++.+
T Consensus       155 ~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~---~~~~---------------------------~iv~~L  204 (494)
T PHA02989        155 SFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID---VISI---------------------------KVIKYL  204 (494)
T ss_pred             hccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc---cccH---------------------------HHHHHH
Confidence            5  6889999999999998533688999999999876521   0122                           333333


Q ss_pred             HHHHHhcCccchhhhccCCChHHHHHHHcC------cHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          243 WEQVLLLDDSKIGELLRKPSRLLFTAVELG------NVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       243 ~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                      +     ..|++++..|..|.||||.++..+      ..+++++|++ +++ ++.+|..|+||||+|+..++.+++++|++
T Consensus       205 l-----~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~  277 (494)
T PHA02989        205 I-----KKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLK  277 (494)
T ss_pred             H-----hCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHH
Confidence            3     348888888888999999877643      5678887665 688 67889999999999999999999999999


Q ss_pred             hCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          317 LGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       317 ~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      +|+|++.    +|..|+||||+|++.++.+.
T Consensus       278 ~Gadin~----~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        278 LGDDIYN----VSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             cCCCccc----cCCCCCCHHHHHHHcCCHHH
Confidence            9999985    99999999999999998763

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-38  Score=300.14  Aligned_cols=182  Identities=21%  Similarity=0.233  Sum_probs=168.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhc-------cCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccC
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR-------ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV   87 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~-------~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~   87 (570)
                      +.+|.|||.+||++|+.++|++|+++.+.++...       .+.+|.+||..|+..||.++|+.|++  .|+++|.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~--~ga~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR--RGASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH--hcCcccccccc
Confidence            5678899999999999999999999755443221       14578999999999999999999999  78999999988


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328           88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  167 (570)
Q Consensus        88 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  167 (570)
                      ..|||--||.-|+.|+|++|+++|+|+. +.|..|.|.||+||.+||.+++++|++.|+|+|.++..|+|+||.|++.|+
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc
Confidence            8999999999999999999999999987 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328          168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      .|++++|+++|+.+  .+|..|.|||..|+..|.
T Consensus       196 vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  196 VDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             HHHHHHHHhCCcee--eecCCCCchHHHHhhhcc
Confidence            99999999999987  578889999999999884

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-38  Score=264.96  Aligned_cols=183  Identities=26%  Similarity=0.307  Sum_probs=170.3

Q ss_pred             cccCC-CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328           11 VERNC-FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        11 ~~~~d-~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      ++.++ .+|+||||+||..|+.+++..|++..+..++.+ |..|+||||+||..|+.|+|+.|+.+ .++|+|..+..|.
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~~evVk~Ll~r-~~advna~tn~G~  107 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGNDEVVKELLNR-SGADVNATTNGGQ  107 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCcHHHHHHHhcC-CCCCcceecCCCc
Confidence            34454 499999999999999999999997666677777 89999999999999999999999995 5999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHH
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  169 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  169 (570)
                      ||||||+..|..||+++|+++|+.+. .+|..|+||||.|+.-|+.+++++|+..|+.+|.+|+.|+||||.|...|+.|
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCch
Confidence            99999999999999999999999887 79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCcccccccCCCCCcHHHHHHc
Q 008328          170 VALDLIQHHPQLAMARDGNGETALHVLAR  198 (570)
Q Consensus       170 ~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~  198 (570)
                      +..+|+++|++. ...|++| ||+..|+-
T Consensus       187 ~a~lLV~~gAd~-~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  187 VAVLLVRAGADT-DREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHHHHhccce-eeccccC-chHHHHHH
Confidence            999999999998 4788888 99988774

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.6e-37  Score=295.36  Aligned_cols=222  Identities=12%  Similarity=0.131  Sum_probs=192.2

Q ss_pred             cCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHh
Q 008328           63 ARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  142 (570)
Q Consensus        63 ~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  142 (570)
                      .++.+++++|++  +++  +.+|.+|+||||+|+..|+.++++.|+++|++++. .  +|.||||+|+..|+.+++++|+
T Consensus         9 ~~~~~~~~~Lis--~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSS--KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHh--CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-C--CCCCHHHHHHHCCCHHHHHHHH
Confidence            468899999999  666  46899999999999999999999999999998763 3  4789999999999999999999


Q ss_pred             hccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCC-cHHHHHHcCCCccccCCchhhhhhhhhcCcc
Q 008328          143 SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE-TALHVLARKPSAFASGSQLGFWRRCIYSVPG  221 (570)
Q Consensus       143 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~  221 (570)
                      ++|++++.+|..|.||||+|+..|+.++++.|+++++++ +.++..|+ ||||+|+..++       .++++.|+...+ 
T Consensus        82 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~-------~eivk~LL~~~~-  152 (284)
T PHA02791         82 FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLND-------VSIVSYFLSEIP-  152 (284)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCC-------HHHHHHHHhcCC-
Confidence            999999999999999999999999999999999999998 57788885 89999999885       444444443211 


Q ss_pred             chhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhc-cCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCch-h
Q 008328          222 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL-RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSM-F  299 (570)
Q Consensus       222 ~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-L  299 (570)
                                                     +.  .| ..|.||||+|+..|+.++++.|+++|++ ++.+|..|.|| |
T Consensus       153 -------------------------------~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L  198 (284)
T PHA02791        153 -------------------------------ST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDI  198 (284)
T ss_pred             -------------------------------cc--cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHH
Confidence                                           11  12 2489999999999999999999999999 56779999987 9


Q ss_pred             HHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHh
Q 008328          300 HIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  339 (570)
Q Consensus       300 h~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A  339 (570)
                      |+|+.+|+.+++++|+++|++++    ++|.+| |||+.|
T Consensus       199 ~~Aa~~~~~e~v~lLl~~Ga~in----~~~~~~-~~l~~~  233 (284)
T PHA02791        199 KLAIDNKDLEMLQALFKYDINIY----SVNLEN-VLLDDA  233 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCc----cCcccC-ccCCCH
Confidence            99999999999999999999997    488854 777444

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-36  Score=317.38  Aligned_cols=267  Identities=15%  Similarity=0.146  Sum_probs=176.3

Q ss_pred             CCChHHHHHHH--cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhc-----CCHHHHHHHHHccCcccccccccCCC
Q 008328           17 TSYAPLHLAAL--KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA-----RRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        17 ~g~t~Lh~Aa~--~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      .|.|+++.+..  .++.++|+.|++. +.+++.+ |..|.||||.|+.+     ++.+++++|++  +|+|+|.+|.+|+
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~--~GadiN~~d~~G~  110 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILIE--NGADINKKNSDGE  110 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHHHHHHH--CCCCCCCCCCCcC
Confidence            35555543332  3356666666653 4455555 56666666666543     45666666666  5666666666666


Q ss_pred             hHHHHHHHcC---cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC---HHHHHHHhhccCCccccc-cchhhHHHHH
Q 008328           90 TALCFAAVSG---VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH---KEMIWYLYSVTKEEDLKE-EDRIELLVAV  162 (570)
Q Consensus        90 TpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A  162 (570)
                      ||||+|+.++   +.+++++|+++|++++ .+|..|.||||+|++.|+   .+++++|+++|++++..+ ..|.||||.+
T Consensus       111 TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        111 TPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             cHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHH
Confidence            6666666654   5666666666666665 466666666666666665   666666666666666553 3466666666


Q ss_pred             HHh----CcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHH
Q 008328          163 IDA----GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALEL  238 (570)
Q Consensus       163 ~~~----~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~  238 (570)
                      +..    ++.+++++|+++|+++ +..+..|.++++.....               +                .......
T Consensus       190 ~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~~~l~~---------------l----------------~~~~~~~  237 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDNGFII-NKENKSHKKKFMEYLNS---------------L----------------LYDNKRF  237 (489)
T ss_pred             HHhccccCCHHHHHHHHHCCCCc-ccCCccccchHHHHHHH---------------H----------------Hhhcccc
Confidence            543    3566666666666665 35555666665521100               0                0000011


Q ss_pred             HHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhC
Q 008328          239 VKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELG  318 (570)
Q Consensus       239 ~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g  318 (570)
                      ...++ .++ ..+.++|.+|..|.||||+|+..|+.+++++|+++|+| ++.+|..|+||||+|+.+++.++++.|++.+
T Consensus       238 ~~~i~-~~l-~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        238 KKNIL-DFI-FSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             hHHHH-HHH-HhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            11111 112 23689999999999999999999999999999999999 6788999999999999999999999999999


Q ss_pred             chhhh
Q 008328          319 AHKDL  323 (570)
Q Consensus       319 ~~~~~  323 (570)
                      ++++.
T Consensus       315 ~~~~~  319 (489)
T PHA02798        315 PNKNT  319 (489)
T ss_pred             CCHHH
Confidence            99986

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-36  Score=315.77  Aligned_cols=290  Identities=13%  Similarity=0.147  Sum_probs=232.2

Q ss_pred             hHHHHHHHcC---CHHHHHHHHhcCccchhhccCCCCCcHHHHHHh--cCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           20 APLHLAALKG---DWDFARNFFNLNPEAVCVRISRNQDTALHIAAG--ARRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        20 t~Lh~Aa~~g---~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      .+||--+...   +.+.|+.|++. . +++..  ..|.|+++.+..  .++.++|++|++  +|+++|.+|..|.||||.
T Consensus         4 ~~l~~y~~~~~~~~~~~v~~ll~~-~-~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~TpL~~   77 (489)
T PHA02798          4 DNLYNYITFSDNVKLSTVKLLIKS-C-NPNEI--VNEYSIFQKYLQRDSPSTDIVKLFIN--LGANVNGLDNEYSTPLCT   77 (489)
T ss_pred             hhhHHHeeecCcccHHHHHHHHhc-C-Chhhh--cccchHHHHHHhCCCCCHHHHHHHHH--CCCCCCCCCCCCCChHHH
Confidence            3455444332   46789999964 2 33332  457788775444  458999999999  899999999999999999


Q ss_pred             HHHc-----CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcC---CHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           95 AAVS-----GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG---HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        95 A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      |+.+     ++.+++++|+++|++++ .+|..|.||||+|+.++   +.+++++|+++|++++.+|.+|.||||+|++.+
T Consensus        78 ~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~  156 (489)
T PHA02798         78 ILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSN  156 (489)
T ss_pred             HHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC
Confidence            9864     67999999999999988 69999999999999986   789999999999999999999999999999998


Q ss_pred             c---HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHH
Q 008328          167 L---YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW  243 (570)
Q Consensus       167 ~---~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~  243 (570)
                      +   .+++++|+++|+++....+..|.||||.++..+..   ....+                           .++.++
T Consensus       157 ~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~---~~~~~---------------------------ivk~Li  206 (489)
T PHA02798        157 HHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNID---RIDAD---------------------------ILKLFV  206 (489)
T ss_pred             CcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccc---cCCHH---------------------------HHHHHH
Confidence            8   99999999999998433356899999998875421   11223                           333333


Q ss_pred             HHHHhcCccchhhhccCCChHHH-------HHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          244 EQVLLLDDSKIGELLRKPSRLLF-------TAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       244 ~~~l~~~~~~~~~~d~~g~tpLh-------~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                           ..|++++..+..|.++++       .+...++.+++++|++ ++| ++.+|..|+||||+|+.+++.+++++|++
T Consensus       207 -----~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~  279 (489)
T PHA02798        207 -----DNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQ  279 (489)
T ss_pred             -----HCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHH
Confidence                 347778887878888876       2455677888888766 577 67889999999999999999999999999


Q ss_pred             hCchhhhhhhhcccCCCcHHHHhhhhCCCCcc--ccCCchhhh
Q 008328          317 LGAHKDLIASYKDENNNNMLHLAGKLAPPDRL--KIDSGAALQ  357 (570)
Q Consensus       317 ~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~~  357 (570)
                      .|+|++.    +|..|+||||+|++.++.+.+  .+..+++++
T Consensus       280 ~GAdin~----~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        280 LGGDINI----ITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cCCcccc----cCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            9999985    999999999999999887633  334454443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-36  Score=288.33  Aligned_cols=215  Identities=19%  Similarity=0.200  Sum_probs=184.1

Q ss_pred             HHHHcCCHHHHHHHHhcCc-cchhh--ccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccc--------ccCCChHH
Q 008328           24 LAALKGDWDFARNFFNLNP-EAVCV--RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR--------NKVGNTAL   92 (570)
Q Consensus        24 ~Aa~~g~~~~v~~ll~~~~-~~~~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~--------d~~g~TpL   92 (570)
                      -|++.|....+..|+.... .++..  ..+.+|.|||-+||++||.++|++|++. .++++...        .-+|-+||
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~-~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEH-CRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHH-hcCCccCCceEEeCCcccCCCchh
Confidence            6888888888877775432 11111  1157899999999999999999999996 56665443        44788999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHH
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL  172 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  172 (570)
                      ..|+..||.++|+.|+++|+++|. ......|||--||..|+.|+|++|+++|+|++..|..|.|.||.||..|+.++++
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~VN~-tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASVND-TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCcccc-ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            999999999999999999999984 6667889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccc-hhccchhhhHHHHHHHHHHHHHHHHh
Q 008328          173 DLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM-RAILDPKLMHLQALELVKRLWEQVLL  248 (570)
Q Consensus       173 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lh~~~~~~~~~l~~~~l~  248 (570)
                      +|++.|+++ +.++..|+|+||.++..|       ++++++.|+..+..+ .+.+|.|||..++.......++.++.
T Consensus       168 yLle~gADv-n~ks~kGNTALH~caEsG-------~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  168 YLLEQGADV-NAKSYKGNTALHDCAESG-------SVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHhCCCc-chhcccCchHHHhhhhcc-------cHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999 699999999999999998       589999999877665 45679999999998777777766653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=307.41  Aligned_cols=243  Identities=16%  Similarity=0.051  Sum_probs=187.8

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  132 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  132 (570)
                      .+++||.|++.|+.+++++|++  .|++++.++.+|.||||+|+..|+.+++++|+++|++++ ..+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~--~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD--IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH--CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHC
Confidence            4678888888888888888888  788888888888888888888888888888888887765 4667788888888888


Q ss_pred             CCHHHHHHHhhccCCcc-ccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhh
Q 008328          133 GHKEMIWYLYSVTKEED-LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF  211 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  211 (570)
                      |+.+++++|++.|++.+ ..+.+|.||||+|+..|+.+++++|+++|+++                              
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~------------------------------  128 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP------------------------------  128 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC------------------------------
Confidence            88888888888776543 34555667777777777777777776666554                              


Q ss_pred             hhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccc
Q 008328          212 WRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKV  291 (570)
Q Consensus       212 ~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  291 (570)
                                                                 +..+..|.||||+|+..|+.+++++|+++|++ .+.+
T Consensus       129 -------------------------------------------~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~  164 (413)
T PHA02875        129 -------------------------------------------DIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIE  164 (413)
T ss_pred             -------------------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCC
Confidence                                                       33344566777777777889999999999999 6678


Q ss_pred             cCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCC-CcHHHHhhhhCCCCc--cccCCchhhhhhHhhhhHHHh
Q 008328          292 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN-NNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWFKEI  368 (570)
Q Consensus       292 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G-~TpLh~A~~~~~~~~--~~~~~ga~~~~~~~l~~~~~~  368 (570)
                      |..|+||||+|+..|+.+++++|++.|++++.    .+..| .||+|+|+..++.+.  +++..|++++.          
T Consensus       165 d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~----~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~----------  230 (413)
T PHA02875        165 DCCGCTPLIIAMAKGDIAICKMLLDSGANIDY----FGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI----------  230 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc----CCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch----------
Confidence            99999999999999999999999999999985    77776 589999999998773  33445554421          


Q ss_pred             hhhcCchhhhhhccCCCCcchhhhhh
Q 008328          369 EKVVQPSYREAKNSEGRTPHILFSEE  394 (570)
Q Consensus       369 ~~~~~~~~~~~~n~~G~Tpl~~a~~~  394 (570)
                              ....+.+|.||++.+...
T Consensus       231 --------~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        231 --------MFMIEGEECTILDMICNM  248 (413)
T ss_pred             --------HhhcCCCchHHHHHHHhh
Confidence                    134577899999987643

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.7e-34  Score=293.98  Aligned_cols=350  Identities=12%  Similarity=0.016  Sum_probs=224.7

Q ss_pred             eeccccCCcccCCCCCChHHHHHHHcCCH----HHHHHHHhcCccchhhccCCCCCcHHHH-HHhcCCHHHHHHHHHccC
Q 008328            3 LLKCLKGGVERNCFTSYAPLHLAALKGDW----DFARNFFNLNPEAVCVRISRNQDTALHI-AAGARRTLFVQELVNLMT   77 (570)
Q Consensus         3 ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~----~~v~~ll~~~~~~~~~~~~~~g~TpLh~-A~~~g~~~~v~~Ll~~~~   77 (570)
                      +|...|+++=. ..+|.||||.-..+.+.    +++-.|++.    .+.. +-+|.+|+|+ |+.+|+.|+|++|++  +
T Consensus        23 ~l~~~g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-n~~~~~~~~~~~s~n~~lElvk~LI~--~   94 (631)
T PHA02792         23 SLIESGANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSS----VDYK-NINDFDIFEYLCSDNIDIELLKLLIS--K   94 (631)
T ss_pred             HHHHcCCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhC----CCcC-ccCCccHHHHHHHhcccHHHHHHHHH--c
Confidence            34556777755 57889999988666552    244444433    3344 7788889986 556889999999999  8


Q ss_pred             cccccccccCCChHHHHHHH-cCcHHHHHHHHhcCCCCCC-----------------------------------cCCCC
Q 008328           78 PEDLALRNKVGNTALCFAAV-SGVTKIAEVMVNKNRELPS-----------------------------------IRGNK  121 (570)
Q Consensus        78 ~~~~~~~d~~g~TpLh~A~~-~g~~~iv~~Ll~~~~~~~~-----------------------------------~~~~~  121 (570)
                      |+|+|.++..|.||+|+|+. .++.|++++|+++|++...                                   ..|..
T Consensus        95 GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (631)
T PHA02792         95 GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM  174 (631)
T ss_pred             CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence            99999999999999999976 6999999999999987431                                   23445


Q ss_pred             CCcHHHHHHHcC-------CHHHHHHHhhccCCccccccchhhHHHHHHHhC--cHHHHHHHHhhCcccccccCCCCCcH
Q 008328          122 GATPLCMAALLG-------HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMARDGNGETA  192 (570)
Q Consensus       122 g~TpLh~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d~~g~tp  192 (570)
                      |.||||+|+.++       +.|+++.|+++|++++..|..|.||||+|+.+.  ..|+++.|++..-+-     .+-+..
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~-----~~~~~~  249 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG-----NELMNI  249 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccc-----cchHhH
Confidence            666666666666       566666666666666666666666666666666  556666665531100     111112


Q ss_pred             HHHHHcCCCcc-ccCCchhhhhhhhhcCc--cc----hhc-cc--------------hhhhHHHHH-HHHHHHHHHHHhc
Q 008328          193 LHVLARKPSAF-ASGSQLGFWRRCIYSVP--GM----RAI-LD--------------PKLMHLQAL-ELVKRLWEQVLLL  249 (570)
Q Consensus       193 Lh~A~~~~~~~-~~~~~~~~~~~l~~~~~--~~----~~~-~~--------------~~~lh~~~~-~~~~~l~~~~l~~  249 (570)
                      |+.=.+..... ...-...++..|+....  ++    ... +.              +..||.-.. ..+..-+-+++..
T Consensus       250 l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId  329 (631)
T PHA02792        250 LSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMID  329 (631)
T ss_pred             HHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            21111111000 00113345555554332  10    000 00              001111000 0011111233344


Q ss_pred             CccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCC--CchhHHHHHhCch---HHHHHHHHhCchhhhh
Q 008328          250 DDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS--RSMFHIAVVHRQE---KIFNLIYELGAHKDLI  324 (570)
Q Consensus       250 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g--~t~Lh~A~~~~~~---~iv~~Ll~~g~~~~~~  324 (570)
                      .|++..  ...+..+++.|+..|+.++|++|+++|++ ++.+|.+|  .||||.|......   +++++|+++|+++|  
T Consensus       330 ~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN--  404 (631)
T PHA02792        330 EGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDIN--  404 (631)
T ss_pred             CCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccc--
Confidence            566553  12356789999999999999999999999 55667764  6999998877654   46889999999998  


Q ss_pred             hhhcccCCCcHHHHhhhhCCCCc--cccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCCCCcchhhhh
Q 008328          325 ASYKDENNNNMLHLAGKLAPPDR--LKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSE  393 (570)
Q Consensus       325 ~n~~d~~G~TpLh~A~~~~~~~~--~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~  393 (570)
                        .+|..|+||||+|+..++.+.  +++..|                     ++++.+|..|+||+++|..
T Consensus       405 --~kD~~G~TPLh~Aa~~~n~eivelLLs~G---------------------ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        405 --KIDKHGRSILYYCIESHSVSLVEWLIDNG---------------------ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             --cccccCcchHHHHHHcCCHHHHHHHHHCC---------------------CCCCCcCCCCCCHHHHHHH
Confidence              499999999999999887552  223333                     3458899999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-32  Score=282.37  Aligned_cols=316  Identities=10%  Similarity=0.102  Sum_probs=240.6

Q ss_pred             cccCCcccCCCCCChHHHH-HHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHh-cCCHHHHHHHHHccCcccc--
Q 008328            6 CLKGGVERNCFTSYAPLHL-AALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAG-ARRTLFVQELVNLMTPEDL--   81 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~-Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~-~g~~~~v~~Ll~~~~~~~~--   81 (570)
                      .++..++..+.+|.+|+|+ |...|+.|+|+.|+++ +++++.+ +..|+||||+|+. .|+.|++++|++  .|+|+  
T Consensus        59 ~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~-~n~~~~~l~ya~~~~~~~eivk~Ll~--~Gad~~~  134 (631)
T PHA02792         59 LLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSI-KNGINIVEKYATTSNPNVDVFKLLLD--KGIPTCS  134 (631)
T ss_pred             HHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccc-cCCCCcceeEeecCCCChHHHHHHHH--CCCCccc
Confidence            4566788889999999985 5567899999999985 7889988 7789999999966 699999999999  77652  


Q ss_pred             ----------------------------------cccccCCChHHHHHHHcC-------cHHHHHHHHhcCCCCCCcCCC
Q 008328           82 ----------------------------------ALRNKVGNTALCFAAVSG-------VTKIAEVMVNKNRELPSIRGN  120 (570)
Q Consensus        82 ----------------------------------~~~d~~g~TpLh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~  120 (570)
                                                        |.+|..|+||||+|+.++       +.|+++.|+++|++++ ..|.
T Consensus       135 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~  213 (631)
T PHA02792        135 NIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTY  213 (631)
T ss_pred             ccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCC
Confidence                                              345677999999999999       8999999999999998 5888


Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHhhccCCccccccchhhHHHHHHHh------CcH--HHHHHHHhhCc--cccc---cc
Q 008328          121 KGATPLCMAALLG--HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA------GLY--DVALDLIQHHP--QLAM---AR  185 (570)
Q Consensus       121 ~g~TpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~------~~~--~~~~~Ll~~~~--~~~~---~~  185 (570)
                      .|.||||+|+.+.  +.|++++|++..-+.    .+....|+--.+.      ++.  .++..|++.+.  +...   ..
T Consensus       214 ~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~  289 (631)
T PHA02792        214 REHTTLYYYVDKCDIKREIFDALFDSNYSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSL  289 (631)
T ss_pred             CCChHHHHHHHcccchHHHHHHHHhccccc----cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhh
Confidence            9999999999999  899999999842111    1223344322221      123  48888888765  2211   11


Q ss_pred             CCC-------------CCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCcc
Q 008328          186 DGN-------------GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDS  252 (570)
Q Consensus       186 d~~-------------g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~  252 (570)
                      +.+             =+--||.=.+.+.     -+.++++.++..+.+.........++.++.+....++ +.|...|+
T Consensus       290 ~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~-----v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIV-elLIs~GA  363 (631)
T PHA02792        290 RNNIIISSILKRYTDSIQDLLSEYVSYHT-----VYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVV-EYILKNGN  363 (631)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHhcCC-----ccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHH-HHHHHcCC
Confidence            111             0112333333332     3688999999988877544445566777644433443 33455699


Q ss_pred             chhhhccCC--ChHHHHHHHcCcH---HHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhh
Q 008328          253 KIGELLRKP--SRLLFTAVELGNV---EFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY  327 (570)
Q Consensus       253 ~~~~~d~~g--~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~  327 (570)
                      +++.+|..|  .||||.|+.....   ++++.|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++++.    
T Consensus       364 DIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----  438 (631)
T PHA02792        364 VVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----  438 (631)
T ss_pred             chhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----
Confidence            999998875  6999998877654   468899999999 677899999999999999999999999999999984    


Q ss_pred             cccCCCcHHHHhhh
Q 008328          328 KDENNNNMLHLAGK  341 (570)
Q Consensus       328 ~d~~G~TpLh~A~~  341 (570)
                      +|..|+||||+|+.
T Consensus       439 kD~~G~TpL~~A~~  452 (631)
T PHA02792        439 TTKYGSTCIGICVI  452 (631)
T ss_pred             cCCCCCCHHHHHHH
Confidence            99999999999976

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=9.5e-33  Score=276.11  Aligned_cols=212  Identities=25%  Similarity=0.286  Sum_probs=172.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  132 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  132 (570)
                      -.+-++.|++.|..+.|+.|++. .+.+++..|++|.|+||.|+.+++.+++++|+++|++++..-..-+.||||+|+++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~-~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVES-EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhh-cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            35678899999999999999993 39999999999999999999999999999999999999966668899999999999


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhh
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW  212 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  212 (570)
                      |+..+|++|+++|||++.+|.+|.+|+|.|++.|+.-++-+|+.++.+. +.+|.+|+||||+|+.++.           
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~-----------  190 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGF-----------  190 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcc-----------
Confidence            9999999999999999999999988888888888888888888887665 4677777777777766653           


Q ss_pred             hhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccccccc
Q 008328          213 RRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD  292 (570)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d  292 (570)
                                                                                   ...++.|++.+++.....|
T Consensus       191 -------------------------------------------------------------~~~v~~LL~f~a~~~~~d~  209 (600)
T KOG0509|consen  191 -------------------------------------------------------------ALFVRRLLKFGASLLLTDD  209 (600)
T ss_pred             -------------------------------------------------------------cHHHHHHHHhccccccccc
Confidence                                                                         3336667777777555555


Q ss_pred             CCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhh
Q 008328          293 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKL  342 (570)
Q Consensus       293 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~  342 (570)
                      .+|.||||+|+..|+.+++++|++.|++.+.    +|.+|.||+.+|.+.
T Consensus       210 ~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~----~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  210 NHGNTPLHWAVVGGNLTAVKLLLEGGADLDK----TNTNGKTPFDLAQER  255 (600)
T ss_pred             ccCCchHHHHHhcCCcceEehhhhcCCcccc----cccCCCCHHHHHHHh
Confidence            7777888888777777777766666676663    777778887777655

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=3e-32  Score=272.52  Aligned_cols=210  Identities=21%  Similarity=0.275  Sum_probs=185.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHH
Q 008328           19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAV   97 (570)
Q Consensus        19 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~   97 (570)
                      .+-.+.|++.|+.+.|+.+++..+.+++.. |.+|-|+||+||.+++.+++++|++  +|+++|..+ .-|.||||+|++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~--~gadvn~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRLDVARYLIS--HGADVNAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcHHHHHHHHH--cCCCccccCCCCCCCcchHHHH
Confidence            567889999999999999999878888887 8999999999999999999999999  899999988 678899999999


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      +|+..+|++|+++|+|+. .+|.+|.||||+|++.|+.-.|-+|+.+|+|+|.+|.+|+||||+|+.+|+...+..|++.
T Consensus       122 ~G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f  200 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGADPT-LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF  200 (600)
T ss_pred             cCcHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence            999999999999999987 7999999999999999999999999999999999999999999999999999889999999


Q ss_pred             CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhh
Q 008328          178 HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL  257 (570)
Q Consensus       178 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~  257 (570)
                      ++.+.-..|..|.||||+|+..|+.       ..++                                ++.+.+.+.+..
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~-------~~v~--------------------------------Ll~~g~~~~d~~  241 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNL-------TAVK--------------------------------LLLEGGADLDKT  241 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCc-------ceEe--------------------------------hhhhcCCccccc
Confidence            9998644458889998888888762       2222                                122235666667


Q ss_pred             ccCCChHHHHHHHc
Q 008328          258 LRKPSRLLFTAVEL  271 (570)
Q Consensus       258 d~~g~tpLh~A~~~  271 (570)
                      |.+|.||+.+|.++
T Consensus       242 ~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  242 NTNGKTPFDLAQER  255 (600)
T ss_pred             ccCCCCHHHHHHHh
Confidence            77778888877776

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.9e-30  Score=236.99  Aligned_cols=177  Identities=12%  Similarity=0.086  Sum_probs=159.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcC--CHHHHHHHHHccCcccccccc-cCCChH
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR--RTLFVQELVNLMTPEDLALRN-KVGNTA   91 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp   91 (570)
                      ...++||||.|++.|+.+.|+.|++.    ++.. |..|.||||+|+..+  +.+++++|++  .|++++.++ ..|.||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-~~~g~TpLh~a~~~~~~~~eiv~~Ll~--~gadvn~~~~~~g~Tp   90 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-NDLYETPIFSCLEKDKVNVEILKFLIE--NGADVNFKTRDNNLSA   90 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhcc-CccCCCHHHHHHHcCCCCHHHHHHHHH--CCCCCCccCCCCCCCH
Confidence            45689999999999999999999864    3444 889999999999855  8999999999  899999997 489999


Q ss_pred             HHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH--cCCHHHHHHHhhccCCccccccchhhHHHH-HHHh
Q 008328           92 LCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL--LGHKEMIWYLYSVTKEEDLKEEDRIELLVA-VIDA  165 (570)
Q Consensus        92 Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~  165 (570)
                      ||+|+..   ++.+++++|+++|++++ .+|..|.||||+|+.  .++.+++++|+++|++++.+|.+|.||||. ++..
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            9998864   47999999999999998 699999999999986  468999999999999999999999999995 5678


Q ss_pred             CcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328          166 GLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       166 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      ++.+++++|+++|+++ +.+|..|+||||+|..++
T Consensus       170 ~~~~iv~~Ll~~Gadi-~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGIDI-NETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhhh
Confidence            8999999999999998 689999999999999764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=228.64  Aligned_cols=107  Identities=11%  Similarity=0.039  Sum_probs=74.3

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC--cHHHHHHHHhcCCCCCCcCCCCCCcHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG--VTKIAEVMVNKNRELPSIRGNKGATPLCM  128 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~  128 (570)
                      ..+.||||+|++.|+.+.|+.|++  .   ++..|..|.||||+|+..+  +.+++++|+++|++++...+..|.||||+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~--~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIK--F---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHH--h---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            456788888888888888888876  2   4566778888888887754  77888888888888774223578888888


Q ss_pred             HHHc---CCHHHHHHHhhccCCccccccchhhHHHHH
Q 008328          129 AALL---GHKEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus       129 A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      |+..   ++.+++++|+++|++++.+|.+|.||||.|
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a  130 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMY  130 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            7653   356777777776666654444444444443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-27  Score=239.35  Aligned_cols=205  Identities=13%  Similarity=0.009  Sum_probs=149.5

Q ss_pred             HHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCC-----CcCCCCCCcHHHHHHH--cCCHHHHHHHh
Q 008328           70 QELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELP-----SIRGNKGATPLCMAAL--LGHKEMIWYLY  142 (570)
Q Consensus        70 ~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~TpLh~A~~--~g~~~~v~~Ll  142 (570)
                      ++++.  +|+++|.++.+|     +|+..+..|++++|+.+|++++     -.++..++|+||.++.  .|+.++|++|+
T Consensus        66 ~~~~~--~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         66 DYFRI--HRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHH--cCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            56666  677777777776     7777788888888888887755     0256667888888887  77788888888


Q ss_pred             hccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccccccc-----CCCCCcHHHHHHcCCCccccCCchhhhhhhhh
Q 008328          143 SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR-----DGNGETALHVLARKPSAFASGSQLGFWRRCIY  217 (570)
Q Consensus       143 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~  217 (570)
                      ++|+|++..  ++.||+|.|+..++.+++++|+++|++..+..     +..|.||+|.|+..++       .        
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~-------~--------  201 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTV-------L--------  201 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCH-------H--------
Confidence            888887763  34678888888888888888888876443222     1235666666666542       2        


Q ss_pred             cCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCc
Q 008328          218 SVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRS  297 (570)
Q Consensus       218 ~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  297 (570)
                                         +.++.+     ...|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus       202 -------------------eIve~L-----Is~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~T  256 (437)
T PHA02795        202 -------------------EIYKLC-----IPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYT  256 (437)
T ss_pred             -------------------HHHHHH-----HhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence                               233222     234777888888888888888888888888888888888 5677888888


Q ss_pred             hhHHHHHhCc--------hHHHHHHHHhCchhhh
Q 008328          298 MFHIAVVHRQ--------EKIFNLIYELGAHKDL  323 (570)
Q Consensus       298 ~Lh~A~~~~~--------~~iv~~Ll~~g~~~~~  323 (570)
                      |||+|+.+|+        .+++++|+++|++++.
T Consensus       257 pLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        257 CLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            8888888874        5888888888887764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=236.64  Aligned_cols=225  Identities=10%  Similarity=0.038  Sum_probs=163.0

Q ss_pred             cCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc------ccccCCChHHHHHHH--cCcHHHHHHHHhcC
Q 008328           40 LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA------LRNKVGNTALCFAAV--SGVTKIAEVMVNKN  111 (570)
Q Consensus        40 ~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~------~~d~~g~TpLh~A~~--~g~~~iv~~Ll~~~  111 (570)
                      .++.+++.. +.+|     +|+..+..|++++|+.  +|++++      .++..++|+||+++.  .|+.++|++|+++|
T Consensus        70 ~~~~~i~~~-~~~~-----~~~~~~~k~~~~~l~s--~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G  141 (437)
T PHA02795         70 IHRDNIDQY-IVDR-----LFAYITYKDIISALVS--KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHG  141 (437)
T ss_pred             HcCcchhhh-hhhh-----HHhhcchHHHHHHHHh--cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCC
Confidence            345556555 4444     8888888888888888  788877      677788888888888  77888888888888


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc------cchhhHHHHHHHhCcHHHHHHHHhhCccccccc
Q 008328          112 RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE------EDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR  185 (570)
Q Consensus       112 ~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  185 (570)
                      ++++.   .++.||||.|+..|+.+++++|+++|++.+...      ..+.+++|.|...++.+++++|+++|+++ +.+
T Consensus       142 ADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~k  217 (437)
T PHA02795        142 AVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQL  217 (437)
T ss_pred             CCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcC
Confidence            88763   345788888888888888888888887432221      23667888888888888888888888887 578


Q ss_pred             CCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHH
Q 008328          186 DGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLL  265 (570)
Q Consensus       186 d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpL  265 (570)
                      |.+|.||||+|+..|+       .                           +.++.++     ..|++++.+|..|.|||
T Consensus       218 D~~G~TpLh~Aa~~g~-------~---------------------------eiVelLL-----~~GAdIN~~d~~G~TpL  258 (437)
T PHA02795        218 DAGGRTLLYRAIYAGY-------I---------------------------DLVSWLL-----ENGANVNAVMSNGYTCL  258 (437)
T ss_pred             CCCCCCHHHHHHHcCC-------H---------------------------HHHHHHH-----HCCCCCCCcCCCCCCHH
Confidence            8888888888888774       2                           2233222     34778888888888888


Q ss_pred             HHHHHcC--------cHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchh
Q 008328          266 FTAVELG--------NVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  321 (570)
Q Consensus       266 h~A~~~g--------~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~  321 (570)
                      |+|+..|        +.++++.|+++|++. +.   .+.|++..  ...+.++++.++++...+
T Consensus       259 h~Aa~~g~~~~~~~~~~eIvelLL~~gadI-~~---~~~~~~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        259 DVAVDRGSVIARRETHLKILEILLREPLSI-DC---IKLAILNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             HHHHHcCCcccccccHHHHHHHHHhCCCCC-Cc---hhHHhhhc--ccchHHHHHHHHHHHHhc
Confidence            8888877        579999999999984 33   22333322  123678999998876544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=8.7e-26  Score=250.76  Aligned_cols=267  Identities=16%  Similarity=0.082  Sum_probs=194.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcC-ccchhhccCCCCCcHHH-HHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLN-PEAVCVRISRNQDTALH-IAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~~~~~~~~~g~TpLh-~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      .++.+++.||+.|+.+.++.+++.. +.+++.. |..|+|||| .|+.+++.++++.|++  .++    ++..|+||||.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~--~g~----~~~~G~T~Lh~   88 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLN--LSC----RGAVGDTLLHA   88 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHh--CCC----CCCcChHHHHH
Confidence            5689999999999999999999762 4556655 899999999 8999999999999999  665    68899999999


Q ss_pred             HHHcC---cHHHHHHHHhcCCCC---------CCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc----------
Q 008328           95 AAVSG---VTKIAEVMVNKNREL---------PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE----------  152 (570)
Q Consensus        95 A~~~g---~~~iv~~Ll~~~~~~---------~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~----------  152 (570)
                      |+..+   ..++++.+.+.+++.         ....+..|.||||+|+.+|+.++|++|+++|++++.++          
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQG  168 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCC
Confidence            99732   233445555544321         11134579999999999999999999999999998653          


Q ss_pred             ----cchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccch
Q 008328          153 ----EDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDP  228 (570)
Q Consensus       153 ----~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  228 (570)
                          ..|.||||.|+..|+.+++++|+++++++ +.+|..|+||||+|+..+...                      ...
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~----------------------~~~  225 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFK----------------------AEY  225 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhh----------------------HHH
Confidence                25889999999999999999999999987 689999999999999875200                      000


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCccch----hhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHH
Q 008328          229 KLMHLQALELVKRLWEQVLLLDDSKI----GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV  304 (570)
Q Consensus       229 ~~lh~~~~~~~~~l~~~~l~~~~~~~----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (570)
                      +.+...   ..+.+++..  ....+.    +..|.+|.||||+|+..|+.++++.|++.+.+ ..........|.+.+..
T Consensus       226 ~~l~~~---~~~~l~~ll--~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~-~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       226 EELSCQ---MYNFALSLL--DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK-QKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHH---HHHHHHHHH--hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh-cceeeccCcchHhHhhh
Confidence            111111   111111111  112222    55688899999999999999999999986655 22334556677776654


Q ss_pred             h--------CchHHHHHHHHhCc
Q 008328          305 H--------RQEKIFNLIYELGA  319 (570)
Q Consensus       305 ~--------~~~~iv~~Ll~~g~  319 (570)
                      .        ++..+++++...+.
T Consensus       300 ~~~~~~~~~~~~~~~~ll~~~~~  322 (743)
T TIGR00870       300 WLEELDGWRRKQSVLELIVVFVI  322 (743)
T ss_pred             ccccCCcccccccHHHHHHHHHH
Confidence            2        23355566665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=207.44  Aligned_cols=236  Identities=21%  Similarity=0.182  Sum_probs=164.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                      .|..-+-.+.+.|+.+++...+.-.+..+... +.+|++++|.|+-.|+.+.++.++.  +++..|..+-.+.+|+.+++
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t-~p~g~~~~~v~ap~~s~~k~sttlt--N~~rgnevs~~p~s~~slsV  137 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAIDET-DPEGWSALLVAAPCGSVDKVSTTLT--NGARGNEVSLMPWSPLSLSV  137 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCCCC-CchhhhhhhhcCCCCCcceeeeeec--ccccCCccccccCChhhHHH
Confidence            34445555666666666655554444444444 5667777777777777776666666  66666666667777777777


Q ss_pred             HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHh
Q 008328           97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  176 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  176 (570)
                      ...+.+.+..+.++.  ++ ..|+.|.|||.||+.+|+.++|++|++.|+|++...+...++|.+|++.|..+++++|++
T Consensus       138 hql~L~~~~~~~~n~--VN-~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~  214 (296)
T KOG0502|consen  138 HQLHLDVVDLLVNNK--VN-ACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLT  214 (296)
T ss_pred             HHHHHHHHHHHhhcc--cc-CccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh
Confidence            666666665555432  22 466777777777777777777777777777777766666777777777777777777766


Q ss_pred             hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhh
Q 008328          177 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE  256 (570)
Q Consensus       177 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~  256 (570)
                      ++.++ |..|-+                                                                    
T Consensus       215 r~vdV-NvyDwN--------------------------------------------------------------------  225 (296)
T KOG0502|consen  215 REVDV-NVYDWN--------------------------------------------------------------------  225 (296)
T ss_pred             cCCCc-ceeccC--------------------------------------------------------------------
Confidence            66655 344444                                                                    


Q ss_pred             hccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHH
Q 008328          257 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML  336 (570)
Q Consensus       257 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpL  336 (570)
                          |.|||-+|++.|+.++++.|+..|++ ....|..|.+++..|+..|+. +|+..+++-++...    +|+.-+||+
T Consensus       226 ----GgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~----Q~~~~~~~~  295 (296)
T KOG0502|consen  226 ----GGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLC----QDSEKRTPL  295 (296)
T ss_pred             ----CCceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHh----hcccCCCCC
Confidence                55555555566678899999999999 566788999999999999987 88888888888775    898899988


Q ss_pred             H
Q 008328          337 H  337 (570)
Q Consensus       337 h  337 (570)
                      |
T Consensus       296 ~  296 (296)
T KOG0502|consen  296 H  296 (296)
T ss_pred             C
Confidence            7

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=2.7e-27  Score=239.53  Aligned_cols=247  Identities=19%  Similarity=0.222  Sum_probs=210.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCc------------cchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccC
Q 008328           20 APLHLAALKGDWDFARNFFNLNP------------EAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV   87 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~------------~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~   87 (570)
                      +-|.-|++.|+.+.+..+|+..+            ...+.. |.+|.|+||.|+.+|+.+++++|++  +.+.++..|..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalhha~Lng~~~is~llle--~ea~ldl~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLHHAVLNGQNQISKLLLD--YEALLDLCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHHHHHhcCchHHHHHHhc--chhhhhhhhcc
Confidence            45788999999999999997532            234454 8899999999999999999999999  78889999999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328           88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  167 (570)
Q Consensus        88 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  167 (570)
                      |.+|||+|++.|+.|++++++.++..++ ..+..|.||||.|++.||.+++.+|+++|+|+-..+..+.|+|.+|++-|.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence            9999999999999999999999996555 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHH
Q 008328          168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  247 (570)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l  247 (570)
                      .++++.|++..-..  ..+    +      ..                                                
T Consensus       161 ~~Vvq~ll~~~~~~--~~~----~------~~------------------------------------------------  180 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPV--QSS----L------RV------------------------------------------------  180 (854)
T ss_pred             hHHHHHHhhhccch--hhc----c------cC------------------------------------------------
Confidence            99999999872221  110    0      00                                                


Q ss_pred             hcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhh
Q 008328          248 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY  327 (570)
Q Consensus       248 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~  327 (570)
                         +  -..++-.+-+|||+|+++|+.++++.|++.|-| ++....+| |+||.|+.+|..++|.+|++.|.+..+    
T Consensus       181 ---~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~~gin~h~----  249 (854)
T KOG0507|consen  181 ---G--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHI----  249 (854)
T ss_pred             ---C--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHhhcccccc----
Confidence               1  112233467899999999999999999999999 45545554 999999999999999999999999885    


Q ss_pred             cccCCCcHHHHhhh
Q 008328          328 KDENNNNMLHLAGK  341 (570)
Q Consensus       328 ~d~~G~TpLh~A~~  341 (570)
                      +|.+|+|+|.+-.+
T Consensus       250 ~n~~~qtaldil~d  263 (854)
T KOG0507|consen  250 KNQHGQTALDIIID  263 (854)
T ss_pred             ccccchHHHHHHHh
Confidence            99999999987654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=247.30  Aligned_cols=301  Identities=19%  Similarity=0.216  Sum_probs=230.6

Q ss_pred             cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328            6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN   85 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d   85 (570)
                      ..|+++..+|+.|.+||.+|+..||..+|+.|++.+ .++..+.|+.++|+|-+||..|..++|++||.  .|++-..+|
T Consensus       778 ~rganiehrdkkgf~plImaatagh~tvV~~llk~h-a~veaQsdrtkdt~lSlacsggr~~vvelLl~--~gankehrn  854 (2131)
T KOG4369|consen  778 VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAH-ADVEAQSDRTKDTMLSLACSGGRTRVVELLLN--AGANKEHRN  854 (2131)
T ss_pred             HhcccccccccccchhhhhhcccCchHHHHHHHhhh-hhhhhhcccccCceEEEecCCCcchHHHHHHH--hhccccccc
Confidence            446777777777777777777777777777777653 45555557777777777777777777777777  677777777


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcC-CCCCCcHHHHHHHcCCHHHHHHHhhccCCcccc-ccchhhHHHHHH
Q 008328           86 KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR-GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK-EEDRIELLVAVI  163 (570)
Q Consensus        86 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~  163 (570)
                      -...|||-+|...|..+++..|+.+|.+++... .+.|-+||++|..+||.+.++.|++.|.|+|.. ..+.+|+|.+|+
T Consensus       855 vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  855 VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc
Confidence            777777777777777777777777777776432 456777777777777777777777777777664 345667777777


Q ss_pred             HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHH
Q 008328          164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW  243 (570)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~  243 (570)
                      ..|..+++.+||...++. ..+-+.|.|||.-++..|..       +                           .-    
T Consensus       935 fqgr~evv~lLLa~~anv-ehRaktgltplme~AsgGyv-------d---------------------------vg----  975 (2131)
T KOG4369|consen  935 FQGRPEVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYV-------D---------------------------VG----  975 (2131)
T ss_pred             ccCcchHHHHHHHHhhhh-hhhcccCCcccchhhcCCcc-------c---------------------------cc----
Confidence            777777777777777776 46777777777777777642       1                           11    


Q ss_pred             HHHHhcCccchhhhc--cCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchh
Q 008328          244 EQVLLLDDSKIGELL--RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  321 (570)
Q Consensus       244 ~~~l~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~  321 (570)
                       ++|+..|+|.|..-  ..-.|+|-+++..||...|+.|+...+. ...+|++|.|+|.+|+..|....+.+|+++++|+
T Consensus       976 -~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~ 1053 (2131)
T KOG4369|consen  976 -NLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSSVADA 1053 (2131)
T ss_pred             -hhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhcccCh
Confidence             33444567666432  3345899999999999999999988887 6788999999999999999999999999999999


Q ss_pred             hhhhhhcccCCCcHHHHhhhhCCCCccccCCch
Q 008328          322 DLIASYKDENNNNMLHLAGKLAPPDRLKIDSGA  354 (570)
Q Consensus       322 ~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga  354 (570)
                      +.    +|+.-+++++-|.+.|+.++++.....
T Consensus      1054 d~----qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1054 DQ----QDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             hh----hhcccccccHHHHHhchhheeccccCc
Confidence            84    999999999999999999887765443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=5.8e-24  Score=236.20  Aligned_cols=242  Identities=17%  Similarity=0.133  Sum_probs=169.6

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH-HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC-FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      ..++.+++.|++.|+.+.++.+++...+.++|..|..|+|||| .|+.+++.+++++|+++|+     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            4568999999999999999999993228899999999999999 8999999999999999987     567899999999


Q ss_pred             HHcC---CHHHHHHHhhccCCc----------cccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccC----------
Q 008328          130 ALLG---HKEMIWYLYSVTKEE----------DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD----------  186 (570)
Q Consensus       130 ~~~g---~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d----------  186 (570)
                      +..+   ..++++.+.+.+.+.          ......|.||||+|+.+|+.++++.|+++|+++. .++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcCCC
Confidence            9732   233444444444221          1123469999999999999999999999999874 322          


Q ss_pred             ----CCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCC
Q 008328          187 ----GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPS  262 (570)
Q Consensus       187 ----~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~  262 (570)
                          ..|+||||.|+..++       .                           +.+     +++..++++++..|..|+
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~-------~---------------------------~iv-----~lLl~~gadin~~d~~g~  209 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGS-------P---------------------------SIV-----ALLSEDPADILTADSLGN  209 (743)
T ss_pred             CCcccccccHHHHHHHhCC-------H---------------------------HHH-----HHHhcCCcchhhHhhhhh
Confidence                246666666666553       1                           122     222344667777777777


Q ss_pred             hHHHHHHHcC---------cHHHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhh
Q 008328          263 RLLFTAVELG---------NVEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY  327 (570)
Q Consensus       263 tpLh~A~~~g---------~~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~  327 (570)
                      ||||+|+..+         ...+.+.+++.+....      +..|.+|.||||+|+..|+.+++++|++.+.+..    .
T Consensus       210 T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~k----k  285 (743)
T TIGR00870       210 TLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQK----K  285 (743)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcc----e
Confidence            7777777765         2234444544443321      3456777777777777777777777777654432    2


Q ss_pred             cccCCCcHHHHhhh
Q 008328          328 KDENNNNMLHLAGK  341 (570)
Q Consensus       328 ~d~~G~TpLh~A~~  341 (570)
                      .....+.|.+++..
T Consensus       286 ~~a~~~~~~~~~~~  299 (743)
T TIGR00870       286 FVAWPNGQQLLSLY  299 (743)
T ss_pred             eeccCcchHhHhhh
Confidence            45566666666543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=6.1e-26  Score=187.99  Aligned_cols=109  Identities=42%  Similarity=0.721  Sum_probs=95.6

Q ss_pred             hhhhHhhhhhhHHHHHHHHHHHHhhhcccCCCCCC---CCCcccccCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008328          403 EKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDD---STGRPIFLHYK-SFMVFAVSDALALFCSATSILMFLSIITSR  478 (570)
Q Consensus       403 ~~~~~~~~~~~~vva~LIATvtFaA~ft~PGG~~~---~~G~~~l~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~~~~~  478 (570)
                      +||++++++++++||+|||||||+|+||||||+++   +.|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            47899999999999999999999999999999965   47999999888 999999999999999999998877422   


Q ss_pred             ccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008328          479 YAEEDFVHSLPNRLIIGLATLFISIATMMAAFAATLFIV  517 (570)
Q Consensus       479 ~~~~~~~~~~~~~l~~~~~~~~~s~~~m~~af~~~~~~v  517 (570)
                         .++.+..++.+.++..++++|+.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               233444556778899999999999999999999986

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=2.1e-26  Score=239.21  Aligned_cols=292  Identities=18%  Similarity=0.150  Sum_probs=246.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc-cccCCChHHHHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL-RNKVGNTALCFA   95 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A   95 (570)
                      +-.|+|-.||..|+.|+|+.++.+ +..+..+ |+.|.+||.+|+-.||..+|+.|+.  +.++++. .|+.+.|+|-+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~r-ganiehr-dkkgf~plImaatagh~tvV~~llk--~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVR-GANIEHR-DKKGFVPLIMAATAGHITVVQDLLK--AHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHh-ccccccc-ccccchhhhhhcccCchHHHHHHHh--hhhhhhhhcccccCceEEEe
Confidence            347899999999999999877765 5666666 8999999999999999999999999  7788875 578899999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc--cchhhHHHHHHHhCcHHHHHH
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--EDRIELLVAVIDAGLYDVALD  173 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~~~~  173 (570)
                      |..|+.++|++||..|++-. .++-...|||.+|...|..++++.|+.+|+++|.+.  +-|..||.+|..+|+.+..+.
T Consensus       832 csggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             cCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence            99999999999999999876 588889999999999999999999999998888775  457899999999999999999


Q ss_pred             HHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccc
Q 008328          174 LIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSK  253 (570)
Q Consensus       174 Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~  253 (570)
                      |++.|.++......+-+|+|-+|+..|+.       +++..|+                                ...++
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~-------evv~lLL--------------------------------a~~an  951 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRP-------EVVFLLL--------------------------------AAQAN  951 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcc-------hHHHHHH--------------------------------HHhhh
Confidence            99999998767778889999999988852       2222222                                23556


Q ss_pred             hhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccc-cCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCC
Q 008328          254 IGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKV-DDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENN  332 (570)
Q Consensus       254 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G  332 (570)
                      +..+-+.|.|||+-++..|.+|+-+.||..|+|.+... -....|+|-+++..||.+.|+.|+...+.+++    +|++|
T Consensus       952 vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v----~NkkG 1027 (2131)
T KOG4369|consen  952 VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRV----PNKKG 1027 (2131)
T ss_pred             hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceec----ccCCC
Confidence            66677789999999999999999999999999965432 33456999999999999999999999998886    99999


Q ss_pred             CcHHHHhhhhCCCC--ccccCCchhh
Q 008328          333 NNMLHLAGKLAPPD--RLKIDSGAAL  356 (570)
Q Consensus       333 ~TpLh~A~~~~~~~--~~~~~~ga~~  356 (570)
                      +|+|.+|+.-|...  .+++..+++.
T Consensus      1028 ~T~Lwla~~Gg~lss~~il~~~~ad~ 1053 (2131)
T KOG4369|consen 1028 CTVLWLASAGGALSSCPILVSSVADA 1053 (2131)
T ss_pred             CcccchhccCCccccchHHhhcccCh
Confidence            99999999988776  3444555554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=5.5e-25  Score=245.54  Aligned_cols=178  Identities=17%  Similarity=0.110  Sum_probs=163.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHH
Q 008328           13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTAL   92 (570)
Q Consensus        13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL   92 (570)
                      ..+.++.++||.||..|+.++++.|++. +.+++.. |.+|+||||+|+..|+.++++.|++  +|++++.+|.+|+|||
T Consensus       520 ~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~--~gadin~~d~~G~TpL  595 (823)
T PLN03192        520 HDDPNMASNLLTVASTGNAALLEELLKA-KLDPDIG-DSKGRTPLHIAASKGYEDCVLVLLK--HACNVHIRDANGNTAL  595 (823)
T ss_pred             cCCccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcChHHHHHHHHh--cCCCCCCcCCCCCCHH
Confidence            4455678999999999999999999975 6677777 9999999999999999999999999  8999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHH
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL  172 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  172 (570)
                      |+|+..|+.+++++|++.++..+   ...|.+|||.|+.+|+.++++.|+++|+|+|.+|.+|.||||.|+..|+.++++
T Consensus       596 ~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~  672 (823)
T PLN03192        596 WNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVR  672 (823)
T ss_pred             HHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHH
Confidence            99999999999999998876543   456789999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcccccccCCCC-CcHHHHHHc
Q 008328          173 DLIQHHPQLAMARDGNG-ETALHVLAR  198 (570)
Q Consensus       173 ~Ll~~~~~~~~~~d~~g-~tpLh~A~~  198 (570)
                      +|+++|+++ +..|..| .||++.+..
T Consensus       673 ~Ll~~GAdv-~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        673 LLIMNGADV-DKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHHcCCCC-CCCCCCCCCCHHHHHHH
Confidence            999999998 5778877 999988754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.4e-25  Score=194.72  Aligned_cols=265  Identities=19%  Similarity=0.117  Sum_probs=206.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  132 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  132 (570)
                      .-..+..+...|-.+--..|... ..   ..++..|+.-+-.+.+.|+.+++..++.-.++-+.-.+.+|+++++.|+-+
T Consensus        31 q~a~~~~~~~m~~t~p~~~l~~~-~s---~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~  106 (296)
T KOG0502|consen   31 QIAELFEQVEMGTTEPRCALTAE-IS---ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPC  106 (296)
T ss_pred             HHHHHHHHhhccccchhHHHHHH-HH---HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCC
Confidence            34566667766666655555552 11   124556667777788888888888877777766555777888888888888


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhh
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW  212 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  212 (570)
                      |+.+.++.++.+|+..|..+--+.+|+.+++...+.++...+.++.   .|..|+.|.|||.+|+.+|+       ++.+
T Consensus       107 ~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~-------i~vV  176 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGH-------IPVV  176 (296)
T ss_pred             CCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCc-------hHHH
Confidence            8888888888888888888888888888888888877776665543   46788889999999888884       4444


Q ss_pred             hhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccccccc
Q 008328          213 RRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD  292 (570)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d  292 (570)
                      ++|+                                ..|++++..-+...|+|.+|+..|..++|++|+++++| ++.-|
T Consensus       177 ~fLL--------------------------------~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyD  223 (296)
T KOG0502|consen  177 QFLL--------------------------------NSGADPDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYD  223 (296)
T ss_pred             HHHH--------------------------------HcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceec
Confidence            4433                                33777777777778999999999999999999999999 67779


Q ss_pred             CCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhhhhc
Q 008328          293 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVV  372 (570)
Q Consensus       293 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~~~~  372 (570)
                      .+|-|||-+|++.++.++++.|++.|++++.    .|..|++++.+|+..|..                     .++..+
T Consensus       224 wNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~----e~dsGy~~mdlAValGyr---------------------~Vqqvi  278 (296)
T KOG0502|consen  224 WNGGTPLLYAVRGNHVKCVESLLNSGADVTQ----EDDSGYWIMDLAVALGYR---------------------IVQQVI  278 (296)
T ss_pred             cCCCceeeeeecCChHHHHHHHHhcCCCccc----ccccCCcHHHHHHHhhhH---------------------HHHHHH
Confidence            9999999999999999999999999999984    999999999999998863                     233333


Q ss_pred             Cc-hhhhhhccCCCCcch
Q 008328          373 QP-SYREAKNSEGRTPHI  389 (570)
Q Consensus       373 ~~-~~~~~~n~~G~Tpl~  389 (570)
                      .. .+++.+|+.-+||+|
T Consensus       279 e~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  279 EKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHhhcccCCCCCC
Confidence            22 455778888888875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2e-24  Score=241.00  Aligned_cols=178  Identities=18%  Similarity=0.189  Sum_probs=135.3

Q ss_pred             ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHH
Q 008328           85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID  164 (570)
Q Consensus        85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  164 (570)
                      +.++.++||.||..|+.++++.|+++|++++ ..|..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||.|+.
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            3345677777777777777777777777766 567777777777777777777777777777777777777777777777


Q ss_pred             hCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328          165 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  244 (570)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~  244 (570)
                      .|+.++++.|++.++...                                                              
T Consensus       601 ~g~~~iv~~L~~~~~~~~--------------------------------------------------------------  618 (823)
T PLN03192        601 AKHHKIFRILYHFASISD--------------------------------------------------------------  618 (823)
T ss_pred             hCCHHHHHHHHhcCcccC--------------------------------------------------------------
Confidence            777777777765432110                                                              


Q ss_pred             HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhh
Q 008328          245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLI  324 (570)
Q Consensus       245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~  324 (570)
                                   ...|.+|||.|+.+|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++++. 
T Consensus       619 -------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~-  683 (823)
T PLN03192        619 -------------PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK-  683 (823)
T ss_pred             -------------cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC-
Confidence                         11355789999999999999999999999 567899999999999999999999999999999884 


Q ss_pred             hhhcccCC-CcHHHHhhhhC
Q 008328          325 ASYKDENN-NNMLHLAGKLA  343 (570)
Q Consensus       325 ~n~~d~~G-~TpLh~A~~~~  343 (570)
                         +|..| .||++++....
T Consensus       684 ---~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        684 ---ANTDDDFSPTELRELLQ  700 (823)
T ss_pred             ---CCCCCCCCHHHHHHHHH
Confidence               88887 99998886543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-24  Score=219.92  Aligned_cols=237  Identities=19%  Similarity=0.193  Sum_probs=189.8

Q ss_pred             ccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc
Q 008328            7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK   86 (570)
Q Consensus         7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~   86 (570)
                      ...++|.+|.+|.|.||.||.+|+.++++.|++... .+... |..|.+|||+|++.|+.|++++|+.  .+..+|..+.
T Consensus        38 rsds~n~qd~~gfTalhha~Lng~~~is~llle~ea-~ldl~-d~kg~~plhlaaw~g~~e~vkmll~--q~d~~na~~~  113 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-LLDLC-DTKGILPLHLAAWNGNLEIVKMLLL--QTDILNAVNI  113 (854)
T ss_pred             CCccccccCccchhHHHHHHhcCchHHHHHHhcchh-hhhhh-hccCcceEEehhhcCcchHHHHHHh--cccCCCcccc
Confidence            345678899999999999999999999998887643 34444 7899999999999999999999999  7889999999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      .|.||||.|++.|+.+++++|+.+|++.. .+|+.+.|+|.+|++.|..++|+.|++...+..                 
T Consensus       114 e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~-----------------  175 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQ-----------------  175 (854)
T ss_pred             cCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHHHHHHhhhccchh-----------------
Confidence            99999999999999999999999999987 799999999999999999999999998722111                 


Q ss_pred             cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHH
Q 008328          167 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV  246 (570)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~  246 (570)
                            .+...+ +  ..++-.+-+|||.|+++|+       .++++.|                               
T Consensus       176 ------~~~~~~-~--~~~~~~~~~plHlaakngh-------~~~~~~l-------------------------------  208 (854)
T KOG0507|consen  176 ------SSLRVG-D--IKRPFPAIYPLHLAAKNGH-------VECMQAL-------------------------------  208 (854)
T ss_pred             ------hcccCC-C--CCCCCCCcCCcchhhhcch-------HHHHHHH-------------------------------
Confidence                  111222 1  3567778888888888774       3333322                               


Q ss_pred             HhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHh---CchHHHHHHH
Q 008328          247 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH---RQEKIFNLIY  315 (570)
Q Consensus       247 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~iv~~Ll  315 (570)
                       ...|.++|....+| |+||.|+-.|..++|..|++.|.+ ...+|.+|+|+|.+-...   ...+++-++.
T Consensus       209 -l~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  209 -LEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             -HhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence             23466676666555 899999999999999999999988 678899999999877653   3445554444

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=6.3e-24  Score=208.46  Aligned_cols=231  Identities=22%  Similarity=0.182  Sum_probs=176.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH
Q 008328           56 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  135 (570)
Q Consensus        56 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~  135 (570)
                      .+.-|+..|..+-|+.|+.  .|++++..|.+|.|+||-||.-.+.+||++|+++|++++ ..|..|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~--~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLN--RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhc--cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcchhhcccccH
Confidence            3555778888888999988  788888889999999999999999999999999999988 6888899999999999999


Q ss_pred             HHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhh
Q 008328          136 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRC  215 (570)
Q Consensus       136 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l  215 (570)
                      .++++|+++|++....+.+|..|...+...-..+++..-..          ..|-+  .-+++...              
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~----------r~gi~--iea~R~~~--------------  173 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMA----------RQGID--IEAARKAE--------------  173 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHH----------Hhccc--HHHHhhhh--------------
Confidence            99999999998888777777777665544333333222111          11111  11111100              


Q ss_pred             hhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCC
Q 008328          216 IYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHS  295 (570)
Q Consensus       216 ~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  295 (570)
                                 .+        .+.+..- . ....|.+.+..+..|.|.||+|+.+|..++.++|++.|.+ .+.+|.+|
T Consensus       174 -----------e~--------~ml~D~~-q-~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dg  231 (527)
T KOG0505|consen  174 -----------EQ--------TMLDDAR-Q-WLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDG  231 (527)
T ss_pred             -----------HH--------HHHHHHH-H-HHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccC
Confidence                       00        0111110 1 1124677777777799999999999999999999999999 67789999


Q ss_pred             CchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhh
Q 008328          296 RSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK  341 (570)
Q Consensus       296 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~  341 (570)
                      +||||.|+..|+.+++++|+++|++.+.    +...|.||+.+|..
T Consensus       232 WtPlHAAA~Wg~~~~~elL~~~ga~~d~----~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  232 WTPLHAAAHWGQEDACELLVEHGADMDA----KTKMGETPLDVADE  273 (527)
T ss_pred             CCcccHHHHhhhHhHHHHHHHhhcccch----hhhcCCCCccchhh
Confidence            9999999999999999999999999984    89999999999865

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=4.9e-23  Score=184.48  Aligned_cols=145  Identities=17%  Similarity=0.035  Sum_probs=118.8

Q ss_pred             ccCCcccCCCCCChHHHHHHHcCCHHHHH----HHHhcCccchhhccCCCCCcHHHHHHhcCCHHH---HHHHHHccCcc
Q 008328            7 LKGGVERNCFTSYAPLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQDTALHIAAGARRTLF---VQELVNLMTPE   79 (570)
Q Consensus         7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~----~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~---v~~Ll~~~~~~   79 (570)
                      ++.+++..+.++.++||.||+.|+.+.++    .++ ..+..++.+ |..|+||||+|+..|+.+.   +++|++  .|+
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~--~Ga   84 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVN--MGA   84 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHH--cCC
Confidence            45666678888889999999999985443    333 345556655 8889999999999888654   788998  789


Q ss_pred             cccccc-cCCChHHHHHHHcCcHHHHHHHHh-cCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchh
Q 008328           80 DLALRN-KVGNTALCFAAVSGVTKIAEVMVN-KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI  156 (570)
Q Consensus        80 ~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  156 (570)
                      +++.+| ..|+||||+|+..|+.+++++|++ .|++++ .+|..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            999988 589999999999999999999995 788887 5888999999999999999999999999998888776654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=6e-23  Score=191.44  Aligned_cols=150  Identities=21%  Similarity=0.264  Sum_probs=71.4

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHc-----CcHHHHHHHHhcCCCCCCcCCCCCCc
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS-----GVTKIAEVMVNKNRELPSIRGNKGAT  124 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~g~T  124 (570)
                      |.+|+|+||||+.++|+++|+.||+. .-++++.+|+-|+||+++|+..     .+.++|+.|.+.| ++|..-...|+|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDS-gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDS-GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhcc-CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            44555555555555555555555542 2244555555555555544432     2344444444433 333233444555


Q ss_pred             HHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328          125 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       125 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      +|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|++|+++||.|++++||....-.....|.+|.|+|.+|...|+
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            55555555555555555555555555555555555555555555555555443222223445555555555554444

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.5e-22  Score=182.20  Aligned_cols=130  Identities=14%  Similarity=0.142  Sum_probs=87.1

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcc----CcccccccccCCChHHHHHHHcCc----HHHHHHHHhcCCCCCCcCC-C
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLM----TPEDLALRNKVGNTALCFAAVSGV----TKIAEVMVNKNRELPSIRG-N  120 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~----~~~~~~~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~~-~  120 (570)
                      |..|.||||+|++.|+.++++.|+...    .+++++.+|..|+||||+|+..|+    .+++++|+++|++++ .++ .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-AQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CCCcC
Confidence            566777777777777777777664321    246667777777777777777666    466677777777765 344 3


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhh-ccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328          121 KGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  180 (570)
Q Consensus       121 ~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  180 (570)
                      .|+||||+|+..++.+++++|++ .|++++..+.+|.||||+|+..++.++++.|++.++.
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67777777777777777777775 4677777777777777777777777777777766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3.2e-22  Score=179.21  Aligned_cols=143  Identities=11%  Similarity=-0.008  Sum_probs=126.8

Q ss_pred             cchhhccCCCCCcHHHHHHhcCCH----HHHHHHHHccCcccccccccCCChHHHHHHHcCcHHH---HHHHHhcCCCCC
Q 008328           43 EAVCVRISRNQDTALHIAAGARRT----LFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKI---AEVMVNKNRELP  115 (570)
Q Consensus        43 ~~~~~~~~~~g~TpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~i---v~~Ll~~~~~~~  115 (570)
                      .+++.. +.++.++||.||+.|+.    +++++|++  .+++++.+|..|+||||+|+..|+.+.   +++|+++|++++
T Consensus        11 ~~~~~~-~~~~~~~l~~a~~~g~~~~l~~~~~~l~~--~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743         11 LGAVEI-DEDEQNTFLRICRTGNIYELMEVAPFISG--DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             hHHhhh-ccCCCcHHHHHHHcCCHHHHHHHHHHHhh--cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            345455 67888999999999998    56667777  789999999999999999999988654   899999999998


Q ss_pred             CcCC-CCCCcHHHHHHHcCCHHHHHHHhh-ccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCC
Q 008328          116 SIRG-NKGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE  190 (570)
Q Consensus       116 ~~~~-~~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  190 (570)
                       .++ ..|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++.+++++|++++++. +.++..|.
T Consensus        88 -~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~  162 (166)
T PHA02743         88 -ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIGL  162 (166)
T ss_pred             -CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCCc
Confidence             576 589999999999999999999995 89999999999999999999999999999999999988 57776664

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.5e-22  Score=188.76  Aligned_cols=163  Identities=25%  Similarity=0.319  Sum_probs=149.2

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhc-----CCHHHHHHHHHccCccccccc
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA-----RRTLFVQELVNLMTPEDLALR   84 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~   84 (570)
                      =+|..|.+|+|+||||+.++|.++|+.||+.+-.+++.+ |+-|.||+++|+..     .+.++|..|...   .|+|.+
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaK  335 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAK  335 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchh
Confidence            478999999999999999999999999999988888887 99999999999874     467889999873   577776


Q ss_pred             c-cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc-CCccccccchhhHHHHH
Q 008328           85 N-KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAV  162 (570)
Q Consensus        85 d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A  162 (570)
                      - ..|+|+|++|+..|+.++|+.||..|+|+| .+|.+|.|+|+.||.+||.|++++||... +|....|.+|.|+|..|
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhH
Confidence            4 579999999999999999999999999998 79999999999999999999999999864 89999999999999999


Q ss_pred             HHhCcHHHHHHHHhh
Q 008328          163 IDAGLYDVALDLIQH  177 (570)
Q Consensus       163 ~~~~~~~~~~~Ll~~  177 (570)
                      ...|+.||.-.|..+
T Consensus       415 leagh~eIa~mlYa~  429 (452)
T KOG0514|consen  415 LEAGHREIAVMLYAH  429 (452)
T ss_pred             HhcCchHHHHHHHHH
Confidence            999999999888665

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=8.2e-22  Score=177.46  Aligned_cols=138  Identities=20%  Similarity=0.246  Sum_probs=122.8

Q ss_pred             cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhc-----CccchhhccCCCCCcHHHHHHhcCC----HHHHHHHHHcc
Q 008328            6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNL-----NPEAVCVRISRNQDTALHIAAGARR----TLFVQELVNLM   76 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~-----~~~~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~~   76 (570)
                      |....++.+|..|.||||+||+.|+.++++.++..     .+.+++.+ |..|+||||+|+..|+    .+++++|++  
T Consensus         9 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~--   85 (169)
T PHA02741          9 CLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIE--   85 (169)
T ss_pred             HHHHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHH--
Confidence            44456788899999999999999999999988642     24567766 8999999999999999    589999999  


Q ss_pred             Cccccccccc-CCChHHHHHHHcCcHHHHHHHHh-cCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328           77 TPEDLALRNK-VGNTALCFAAVSGVTKIAEVMVN-KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  147 (570)
Q Consensus        77 ~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~  147 (570)
                      .|++++.+|. .|+||||+|+..++.+++++|++ .|++++ .+|..|+||||+|+..|+.+++++|++.++.
T Consensus        86 ~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         86 LGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8999999985 99999999999999999999998 588877 7899999999999999999999999998754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=3.2e-22  Score=177.62  Aligned_cols=135  Identities=19%  Similarity=0.137  Sum_probs=109.0

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHh----cCccchhhccCCCCCcHHHHHHhcCCHH---HHHHHHHccCcccccc
Q 008328           11 VERNCFTSYAPLHLAALKGDWDFARNFFN----LNPEAVCVRISRNQDTALHIAAGARRTL---FVQELVNLMTPEDLAL   83 (570)
Q Consensus        11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~----~~~~~~~~~~~~~g~TpLh~A~~~g~~~---~v~~Ll~~~~~~~~~~   83 (570)
                      .+..|.+|.||||+||+.|+.+.+..+..    ..+..+..+ |.+|+||||+|+..|+.+   ++++|++  .|++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~--~gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLME--WGADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHH--cCCCccc
Confidence            45678889999999999998432211111    111223334 889999999999999874   6888999  8999999


Q ss_pred             cc-cCCChHHHHHHHcCcHHHHHHHHhc-CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCcc
Q 008328           84 RN-KVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEED  149 (570)
Q Consensus        84 ~d-~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~  149 (570)
                      +| ..|+||||+|+..|+.+++++|+++ |++++ .+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            98 4899999999999999999999974 88877 689999999999999999999999999998764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=1.2e-21  Score=192.63  Aligned_cols=228  Identities=18%  Similarity=0.234  Sum_probs=177.7

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHH
Q 008328           91 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV  170 (570)
Q Consensus        91 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  170 (570)
                      .+.-|+..|..+=++.|+..|++++ ..|.+|.|+||-+|...+.+||++|+++|+++|..|.+|+||||.|+..|+.++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~-~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPN-LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCcc-ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            4566888999999999999999986 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcC
Q 008328          171 ALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLD  250 (570)
Q Consensus       171 ~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~  250 (570)
                      +++|++.|+++. ..+.+|..|+..+.....       .++                           .....    ...
T Consensus       122 ~~~li~~gA~~~-avNsdg~~P~dl~e~ea~-------~~~---------------------------l~~~~----~r~  162 (527)
T KOG0505|consen  122 VEYLIQHGANLL-AVNSDGNMPYDLAEDEAT-------LDV---------------------------LETEM----ARQ  162 (527)
T ss_pred             HHHHHHhhhhhh-hccCCCCCccccccCcch-------hHH---------------------------HHHHH----HHh
Confidence            999999999985 889999999887654321       110                           00000    001


Q ss_pred             ccchhhhc-cCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcc
Q 008328          251 DSKIGELL-RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKD  329 (570)
Q Consensus       251 ~~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d  329 (570)
                      +.+++.-- ....+-         .+=++..+..|.+ ....+..|.|.||+|+.+|..++.++|++.|.++++    +|
T Consensus       163 gi~iea~R~~~e~~m---------l~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~----~D  228 (527)
T KOG0505|consen  163 GIDIEAARKAEEQTM---------LDDARQWLNAGAE-LDARHARGATALHVAAANGYTEVAALLLQAGYSVNI----KD  228 (527)
T ss_pred             cccHHHHhhhhHHHH---------HHHHHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHHHHHhccCccc----cc
Confidence            11111100 000111         1223344557777 566677799999999999999999999999999985    99


Q ss_pred             cCCCcHHHHhhhhCCCC--ccccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCCCCcchhhhh
Q 008328          330 ENNNNMLHLAGKLAPPD--RLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSE  393 (570)
Q Consensus       330 ~~G~TpLh~A~~~~~~~--~~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~  393 (570)
                      .+|+||||.|+.-|..+  .+++.+|+++                     +.++..|.||++++.+
T Consensus       229 ~dgWtPlHAAA~Wg~~~~~elL~~~ga~~---------------------d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  229 YDGWTPLHAAAHWGQEDACELLVEHGADM---------------------DAKTKMGETPLDVADE  273 (527)
T ss_pred             ccCCCcccHHHHhhhHhHHHHHHHhhccc---------------------chhhhcCCCCccchhh
Confidence            99999999999888765  3334444443                     7888999999999876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2e-20  Score=180.26  Aligned_cols=139  Identities=12%  Similarity=0.079  Sum_probs=110.8

Q ss_pred             CCCCCc-HHHHHHhcCCHHHHHHHHHccCcccccccc----cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCc
Q 008328           50 SRNQDT-ALHIAAGARRTLFVQELVNLMTPEDLALRN----KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT  124 (570)
Q Consensus        50 ~~~g~T-pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d----~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~T  124 (570)
                      |..|+| |||.|++.|+.+++++|++  +|++++.++    ..|.||||+|+..|+.+++++|+++|++++...+..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~--~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILK--LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHH--CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            555544 5667777788899999998  788888863    588899999999999999999999998887334567889


Q ss_pred             HHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHH
Q 008328          125 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL  196 (570)
Q Consensus       125 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A  196 (570)
                      |||+|+..|+.+++++|+++|++++.+|.+|.||||+|++.++.+++..+..      ...+..+.+|++++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  172 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL  172 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh
Confidence            9999998899999999999999988888888999999988888887655542      23466777888865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=1.9e-20  Score=156.98  Aligned_cols=140  Identities=19%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcH
Q 008328           22 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVT  101 (570)
Q Consensus        22 Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~  101 (570)
                      +.+|+..+....|+.||+..+.-+|.+ |.+|.||||.|+.+|+.+||+.|+.  .|++++.+...|.||||-||..++.
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~--~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLL--SGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHHHHHH--ccCCcccccccCccchhhhhcccch
Confidence            456666666666666666666666666 6666666666666666666666666  5666666666666666666666666


Q ss_pred             HHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH-HHHHHHh-hccCCccccccchhhHHHHHHHh
Q 008328          102 KIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK-EMIWYLY-SVTKEEDLKEEDRIELLVAVIDA  165 (570)
Q Consensus       102 ~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~  165 (570)
                      +++-.|+++|+|++ ...+...||||+||...+. ..+++|+ ..+.++..++..+.||+..|-+.
T Consensus       144 ~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  144 EVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            66666666666666 4555566666666655443 3334333 23344555555555555555444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=3.5e-20  Score=178.62  Aligned_cols=156  Identities=13%  Similarity=0.103  Sum_probs=130.8

Q ss_pred             ccCCCCCCh-HHHHHHHcCCHHHHHHHHhcCccchhhcc---CCCCCcHHHHHHhcCCHHHHHHHHHccCccccccc-cc
Q 008328           12 ERNCFTSYA-PLHLAALKGDWDFARNFFNLNPEAVCVRI---SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NK   86 (570)
Q Consensus        12 ~~~d~~g~t-~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~---~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~   86 (570)
                      -.+|..|+| +||.|++.|+.++++.|++. |.+++.+.   +..|.||||+|++.|+.+++++|++  +|++++.+ +.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~--~GADVN~~~~~  102 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR--YGADVNRYAEE  102 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCcCcccCC
Confidence            356777755 56667777999999999976 56677651   4589999999999999999999999  89999986 46


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      .|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|++.++.+++..+...+     .+..+.+|.+++   +
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~  173 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICDNE-----ISNFYKHPKKIL---I  173 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcCCc-----ccccccChhhhh---c
Confidence            89999999999999999999999999998 69999999999999999999887665322     355566777765   4


Q ss_pred             cHHHHHHHHhhCc
Q 008328          167 LYDVALDLIQHHP  179 (570)
Q Consensus       167 ~~~~~~~Ll~~~~  179 (570)
                      +.++++.|+.++.
T Consensus       174 n~ei~~~Lish~v  186 (300)
T PHA02884        174 NFDILKILVSHFI  186 (300)
T ss_pred             cHHHHHHHHHHHH
Confidence            6899999999876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=7.3e-21  Score=168.90  Aligned_cols=129  Identities=11%  Similarity=0.027  Sum_probs=110.4

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcc-----CcccccccccCCChHHHHHHHcCcH---HHHHHHHhcCCCCCCcCC-C
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLM-----TPEDLALRNKVGNTALCFAAVSGVT---KIAEVMVNKNRELPSIRG-N  120 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~-----~~~~~~~~d~~g~TpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~~-~  120 (570)
                      |.+|.||||+|++.|+.  ++++....     .+..++.+|.+|.||||+|+..|+.   +++++|+++|++++ .++ .
T Consensus        14 d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-~~~~~   90 (154)
T PHA02736         14 DIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-GKERV   90 (154)
T ss_pred             CCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-ccCCC
Confidence            88999999999999984  33332210     1223456799999999999999986   56899999999998 466 5


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhh-ccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccc
Q 008328          121 KGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL  181 (570)
Q Consensus       121 ~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  181 (570)
                      .|+||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|++.|++.
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999998 59999999999999999999999999999999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=4.4e-20  Score=154.74  Aligned_cols=143  Identities=20%  Similarity=0.136  Sum_probs=125.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH
Q 008328           56 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  135 (570)
Q Consensus        56 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~  135 (570)
                      -+-+|+..+....|+.||+. ...-+|.+|.+|.||||-|+.+|+.+||+.|+..|++.. .+...|+||||-||..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccchhhhhcccch
Confidence            46789999999999999995 556699999999999999999999999999999999988 6888999999999999999


Q ss_pred             HHHHHHhhccCCccccccchhhHHHHHHHhCcH-HHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328          136 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY-DVALDLIQHHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       136 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      +++..|+++|+|+|.......||||.|+.+.+. +.+++|+....--....+..+.||+.+|-+.+
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999999999999999987665 55666665443333567888999999998765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=8.2e-20  Score=165.26  Aligned_cols=121  Identities=29%  Similarity=0.357  Sum_probs=86.5

Q ss_pred             eccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc
Q 008328            4 LKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL   83 (570)
Q Consensus         4 l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~   83 (570)
                      |...+.|.|.-|..|.+|||+||+.|+..+++.||.+ +..+|.. +...+||||+|+..||.++|+.|++  ..+|+|.
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~r-garvn~t-nmgddtplhlaaahghrdivqkll~--~kadvna   95 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNST-NMGDDTPLHLAAAHGHRDIVQKLLS--RKADVNA   95 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccc-cCCCCcchhhhhhcccHHHHHHHHH--Hhcccch
Confidence            4455667777777777777777777777777766654 4556655 6666777777777777777777777  6777777


Q ss_pred             cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      .|+.|+|||||||..|...+++-|+..|+.++ +.|++|.|||.-|
T Consensus        96 vnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldka  140 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKA  140 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhh
Confidence            77777777777777777777777777777766 5777777777665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1e-19  Score=164.70  Aligned_cols=134  Identities=19%  Similarity=0.212  Sum_probs=122.9

Q ss_pred             HHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHH
Q 008328           26 ALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE  105 (570)
Q Consensus        26 a~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~  105 (570)
                      |+.|+.-.|+..|+....+.|.- |..|.+|||+||+.|+..+|+.|+.  .|+.+|..|.-..||||+|+..|+.++|+
T Consensus         8 cregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh~aivemll~--rgarvn~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGHVAIVEMLLS--RGARVNSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhcccHHHHHHHHh--cccccccccCCCCcchhhhhhcccHHHHH
Confidence            56676666666677666677776 8899999999999999999999999  89999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH
Q 008328          106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI  163 (570)
Q Consensus       106 ~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  163 (570)
                      .|+++.+|++ ..|..|.|||||||..|...+.+-|+..|+.++..+++|.|||..|-
T Consensus        85 kll~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   85 KLLSRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            9999999998 79999999999999999999999999999999999999999998763

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=8.6e-18  Score=134.19  Aligned_cols=88  Identities=28%  Similarity=0.422  Sum_probs=45.4

Q ss_pred             HHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHH
Q 008328           57 LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE  136 (570)
Q Consensus        57 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~  136 (570)
                      ||+||+.|+.+++++|++  .+.+++.    |+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~--~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE--KGADINL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH--TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHH--CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHcCCHH
Confidence            455555555555555555  3444443    4555555555555555555555555544 34455555555555555555


Q ss_pred             HHHHHhhccCCcccc
Q 008328          137 MIWYLYSVTKEEDLK  151 (570)
Q Consensus       137 ~v~~Ll~~g~~~~~~  151 (570)
                      ++++|+++|++++.+
T Consensus        74 ~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 IVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHHTTT-TTSS
T ss_pred             HHHHHHHcCCCCCCc
Confidence            555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=172.88  Aligned_cols=166  Identities=20%  Similarity=0.259  Sum_probs=146.5

Q ss_pred             CCcccCCCCCChHHHHHHH---cCCHHHHHHHHhcCccchhhcc---CCCCCcHHHHHHhcCCHHHHHHHHHccCccccc
Q 008328            9 GGVERNCFTSYAPLHLAAL---KGDWDFARNFFNLNPEAVCVRI---SRNQDTALHIAAGARRTLFVQELVNLMTPEDLA   82 (570)
Q Consensus         9 ~~~~~~d~~g~t~Lh~Aa~---~g~~~~v~~ll~~~~~~~~~~~---~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~   82 (570)
                      -+++.+...|.|.||.|.-   .++.++++.||+..|..+|...   ...|.||||+|+.+.+.++|++|++  .|+|++
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~--~gADV~  211 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA--AGADVH  211 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH--cCCchh
Confidence            3566777889999999987   4566889999988776655432   4679999999999999999999999  899987


Q ss_pred             cc---------c--------------cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHH
Q 008328           83 LR---------N--------------KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW  139 (570)
Q Consensus        83 ~~---------d--------------~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~  139 (570)
                      ++         |              ..|+.||-+||..++.|++++|+++|+|++ .+|..|+|.||..+..-..+|..
T Consensus       212 aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~  290 (782)
T KOG3676|consen  212 ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYD  290 (782)
T ss_pred             hHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC-ccccCCChHHHHHHHHHHHHHHH
Confidence            64         1              147889999999999999999999999988 79999999999999999999999


Q ss_pred             HHhhccCC--ccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328          140 YLYSVTKE--EDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus       140 ~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      +++++|++  ...++..|.|||.+|+.-|..++.+.+++.
T Consensus       291 ~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  291 LALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999  888999999999999999999999999998

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-17  Score=172.78  Aligned_cols=199  Identities=15%  Similarity=0.151  Sum_probs=162.5

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCc--------cchhhccCCCCCcHHHHHHh---cCCHHHHHHHHHccCc
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNP--------EAVCVRISRNQDTALHIAAG---ARRTLFVQELVNLMTP   78 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~--------~~~~~~~~~~g~TpLh~A~~---~g~~~~v~~Ll~~~~~   78 (570)
                      +++..+...+.++..|...|..+....+++...        .+++.+ ...|.|.||.|.-   .++.++++.|++. .+
T Consensus        93 ~p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~-~p  170 (782)
T KOG3676|consen   93 GPNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEI-FP  170 (782)
T ss_pred             CcchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHH-hH
Confidence            445444445578999999999988887775431        344454 6789999999997   4566899999996 34


Q ss_pred             ccccc----cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCc--------CC--------------CCCCcHHHHHHHc
Q 008328           79 EDLAL----RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI--------RG--------------NKGATPLCMAALL  132 (570)
Q Consensus        79 ~~~~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~--------~~--------------~~g~TpLh~A~~~  132 (570)
                      .-+|.    ....|.||||.|+.+.+.++|++|++.|+|++..        .|              ..|+.||.+||..
T Consensus       171 ~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~  250 (782)
T KOG3676|consen  171 KLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT  250 (782)
T ss_pred             HHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc
Confidence            33332    3457999999999999999999999999998741        11              2478999999999


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc--cccccCCCCCcHHHHHHcCCCccccCCchh
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ--LAMARDGNGETALHVLARKPSAFASGSQLG  210 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~  210 (570)
                      ++.|++++|+++|+|++.+|..|+|.||.++..-..++...+++.|++  . ..+|..|.|||..|++.|.       .+
T Consensus       251 nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~-~v~N~qgLTPLtLAaklGk-------~e  322 (782)
T KOG3676|consen  251 NQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALE-HVRNNQGLTPLTLAAKLGK-------KE  322 (782)
T ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccc-cccccCCCChHHHHHHhhh-------HH
Confidence            999999999999999999999999999999999999999999999998  4 5889999999999999984       56


Q ss_pred             hhhhhhhc
Q 008328          211 FWRRCIYS  218 (570)
Q Consensus       211 ~~~~l~~~  218 (570)
                      +.+.+++.
T Consensus       323 mf~~ile~  330 (782)
T KOG3676|consen  323 MFQHILER  330 (782)
T ss_pred             HHHHHHHh
Confidence            66666544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=5.2e-17  Score=138.53  Aligned_cols=121  Identities=25%  Similarity=0.355  Sum_probs=59.8

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  130 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~  130 (570)
                      .+|.||||+|+..|+.+++++|++  .+.+.+.++..|.||||+|+..++.+++++|++.+++++ ..+..|.||+|+|+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~--~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~l~~a~   81 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLE--NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLAA   81 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHH
Confidence            344555555555555555555554  344444444455555555555555555555555544333 34444455555555


Q ss_pred             HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328          131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus       131 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      ..++.+++++|++++.+.+..+..+.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            55555555555555544444444455555555555554444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=1.2e-16  Score=136.22  Aligned_cols=125  Identities=29%  Similarity=0.417  Sum_probs=113.3

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHH
Q 008328           13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTAL   92 (570)
Q Consensus        13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL   92 (570)
                      ..|.+|.||||.|+..|+.++++.+++... ..+.+ +..|.||||+|+..++.+++++|++  .+.+++..+..|.||+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~-~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~--~~~~~~~~~~~~~~~l   77 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGA-DVNAK-DNDGRTPLHLAAKNGHLEIVKLLLE--KGADVNARDKDGNTPL   77 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCcc-CCCCCcHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCCHH
Confidence            456889999999999999999999997654 33444 8899999999999999999999999  7888999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHh
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  142 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  142 (570)
                      |+|+..++.+++++|++++.+.. ..+..|.||+++|...++.+++++|+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999998876 58899999999999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=6.7e-17  Score=129.00  Aligned_cols=86  Identities=28%  Similarity=0.436  Sum_probs=77.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcH
Q 008328           22 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVT  101 (570)
Q Consensus        22 Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~  101 (570)
                      ||.||+.|+.++++.|++.. .++    +. |+||||+|+..|+.+++++|++  .|++++.+|.+|.||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~----~~-~~~~l~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADI----NL-GNTALHYAAENGNLEIVKLLLE--NGADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STT----TS-SSBHHHHHHHTTTHHHHHHHHH--TTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCC----CC-CCCHHHHHHHcCCHHHHHHHHH--hcccccccCCCCCCHHHHHHHcCCH
Confidence            79999999999999999853 333    22 8999999999999999999999  8999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCC
Q 008328          102 KIAEVMVNKNRELP  115 (570)
Q Consensus       102 ~iv~~Ll~~~~~~~  115 (570)
                      +++++|+++|++++
T Consensus        73 ~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   73 EIVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHHTTT-TT
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=5.9e-15  Score=110.65  Aligned_cols=101  Identities=18%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCc
Q 008328           21 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  100 (570)
Q Consensus        21 ~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~  100 (570)
                      -..++.++|..+.|+..+..+ .+++..  ..|++|||+|+.+|+.+++++|+.  .|++++.+|+.|-|||.-|+..||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~~--~ggR~plhyAAD~GQl~ilefli~--iGA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNEI--YGGRTPLHYAADYGQLSILEFLIS--IGANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHHH--hCCcccchHhhhcchHHHHHHHHH--hccccCCccccCCcHHHHHHHHhh
Confidence            355667777777777666543 455543  467777777777777777777777  677777777777777777777777


Q ss_pred             HHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328          101 TKIAEVMVNKNRELPSIRGNKGATPLC  127 (570)
Q Consensus       101 ~~iv~~Ll~~~~~~~~~~~~~g~TpLh  127 (570)
                      .++|++|+++|++-. .+..+|.+.+.
T Consensus        80 ~~cVklLL~~GAdrt-~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRT-IHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHHcCcccc-eeCCCchhHHh
Confidence            777777777777654 45566655443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=1.2e-14  Score=137.88  Aligned_cols=127  Identities=21%  Similarity=0.343  Sum_probs=120.9

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCc-----HHHHHHHHhcCC--CCCCcCCCCC
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV-----TKIAEVMVNKNR--ELPSIRGNKG  122 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~~~g  122 (570)
                      +..+.+++|.|+..+..+++++++.  .+.+++.+|.+|.||||+|+..|+     .++++.|++.|+  +....+|..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLA--SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHH--cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            5678999999999999999999999  899999999999999999999999     999999999999  6676789999


Q ss_pred             CcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC
Q 008328          123 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  178 (570)
Q Consensus       123 ~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  178 (570)
                      .||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999876

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=4e-15  Score=111.53  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=90.7

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      --..+++++|..+-|+..+.  .|.++|..- .|+||||+|+..|+.+++++|+..|++++ .+|++|-|||.-|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~--~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN--EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH--ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHHhh
Confidence            34678899999999999888  677777544 78999999999999999999999999988 699999999999999999


Q ss_pred             HHHHHHHhhccCCccccccchhhHHHHH
Q 008328          135 KEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus       135 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      .++|++|+++|+|-.....+|.+.+..+
T Consensus        80 ~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999888888888776543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=6.5e-14  Score=132.88  Aligned_cols=131  Identities=27%  Similarity=0.313  Sum_probs=118.4

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCC-----HHHHHHHHHccCcc---cc
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR-----TLFVQELVNLMTPE---DL   81 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~-----~~~v~~Ll~~~~~~---~~   81 (570)
                      ..+..+..+.+++|.++..++.+.++.++.. +.+++.+ |..|.||||+|+..|+     .++++.|++  .|+   +.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~--~g~~~~~~  140 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLE--AGADLDVN  140 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHH--cCCCCCCc
Confidence            3445567789999999999999999877775 4556666 9999999999999999     999999999  788   67


Q ss_pred             cccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc
Q 008328           82 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT  145 (570)
Q Consensus        82 ~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g  145 (570)
                      +.+|..|+||||+|+..|+.++++.|++.|+++. .++..|.|++++|+..++.++++.+++.+
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7779999999999999999999999999999988 58999999999999999999999999976

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=3.2e-13  Score=146.89  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=95.6

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      +.||.|+..|+.+.++.|++  .|+++|.+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~--~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT--GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCc
Confidence            35889999999999999999  899999999999999999999999999999999999987 699999999999999999


Q ss_pred             HHHHHHHhhc-------cCCccccccchhhHHHHH
Q 008328          135 KEMIWYLYSV-------TKEEDLKEEDRIELLVAV  162 (570)
Q Consensus       135 ~~~v~~Ll~~-------g~~~~~~~~~g~t~L~~A  162 (570)
                      .+++++|+++       |++.+..+..|.+|+..+
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999999998       888888888787776543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.4e-13  Score=97.99  Aligned_cols=54  Identities=28%  Similarity=0.381  Sum_probs=33.9

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHH
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV  108 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  108 (570)
                      |+||||+|++.|+.+++++|++  .+.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~--~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE--HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH--TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5677777777777777777776  56777777777777777777777777777664

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=6.3e-13  Score=120.97  Aligned_cols=116  Identities=25%  Similarity=0.265  Sum_probs=57.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc-cccCCChHHHHHHHc
Q 008328           20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL-RNKVGNTALCFAAVS   98 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~   98 (570)
                      .||..+...|+.+....||+. ...++.+ |.+|+|||..|+..|+.++|++|++  .|+|+|. ++..+.||||+|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~--~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLE--LGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHH--hCCCcCcccccccccHHHHHHHc
Confidence            455555555555555555443 2223333 5555555555555555555555555  4555543 233445555555555


Q ss_pred             CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHH
Q 008328           99 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY  140 (570)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~  140 (570)
                      |+.++.++|++.|+... ..|.-|+|+-.+|+.-|+.++|..
T Consensus        90 Gn~dvcrllldaGa~~~-~vNsvgrTAaqmAAFVG~H~CV~i  130 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMY-LVNSVGRTAAQMAAFVGHHECVAI  130 (396)
T ss_pred             CCchHHHHHHhccCccc-cccchhhhHHHHHHHhcchHHHHH
Confidence            55555555555555443 344455555555555555555443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=8.7e-14  Score=99.45  Aligned_cols=56  Identities=23%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             HHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHh
Q 008328          280 LIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  339 (570)
Q Consensus       280 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A  339 (570)
                      ||++|+..++.+|..|+||||+|+.+|+.+++++|++.|++++.    +|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~----~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA----KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC----CcCCCCCHHHhC
Confidence            56777444788899999999999999999999999999999885    999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=3.5e-13  Score=131.98  Aligned_cols=113  Identities=21%  Similarity=0.116  Sum_probs=53.1

Q ss_pred             HHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHH
Q 008328           60 AAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW  139 (570)
Q Consensus        60 A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~  139 (570)
                      |+..|.+|+|+..+.  .-.|+...|++|-|+||-|+..||.+||++|++.|+++| ..|.+||||||+|+.+++..+++
T Consensus       557 aaLeGEldlVq~~i~--ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  557 AALEGELDLVQRIIY--EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhcchHHHHHHHHH--hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchHHHH
Confidence            444455555555544  234444445555555555555555555555555555544 34555555555555555555555


Q ss_pred             HHhhccCCccc-cccchhhHHHHHH--HhCcHHHHHHHH
Q 008328          140 YLYSVTKEEDL-KEEDRIELLVAVI--DAGLYDVALDLI  175 (570)
Q Consensus       140 ~Ll~~g~~~~~-~~~~g~t~L~~A~--~~~~~~~~~~Ll  175 (570)
                      .|++.|+-+-. .-.++.|+..-|-  +.|..++.++|-
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            55555543322 2233444443322  234444555543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.40  E-value=2.2e-13  Score=97.35  Aligned_cols=44  Identities=30%  Similarity=0.364  Sum_probs=15.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      |..|+||||+||+.|+.+++++|++  .|++++.+|.+|+||||+|
T Consensus        13 d~~G~T~LH~A~~~g~~~~v~~Ll~--~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   13 DKYGNTPLHWAARYGHSEVVRLLLQ--NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TTS--HHHHHHHHT-HHHHHHHHH--CT--TT---TTS--HHHH-
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHH--CcCCCCCCcCCCCCHHHhC
Confidence            4444444444444444444444443  4444444444444444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=1.2e-12  Score=142.30  Aligned_cols=106  Identities=22%  Similarity=0.257  Sum_probs=96.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHH
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  169 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  169 (570)
                      +.|+.|+..|+.+.++.|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            46899999999999999999999988 68999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-------CcccccccCCCCCcHHHHHH
Q 008328          170 VALDLIQH-------HPQLAMARDGNGETALHVLA  197 (570)
Q Consensus       170 ~~~~Ll~~-------~~~~~~~~d~~g~tpLh~A~  197 (570)
                      ++++|+++       +++. +..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            99999998       6655 466777777766544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=8e-13  Score=94.01  Aligned_cols=54  Identities=30%  Similarity=0.513  Sum_probs=36.3

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHh
Q 008328           88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  142 (570)
Q Consensus        88 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  142 (570)
                      |.||||+|++.|+.+++++|+++|.+++ .+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            5677777777777777777777777766 45777777777777777777777764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=2.8e-12  Score=116.80  Aligned_cols=124  Identities=19%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      .-..||.-++..|..+-..-|+.  .-..+|.+|..|.|||..|+..|+.+++++|++.|+|+|..++..+.||||.|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs--~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLS--TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHH--HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            34689999999999999999998  5677999999999999999999999999999999999998899999999999999


Q ss_pred             cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328          132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      +|+.++.++|++.|+.+...+.-|+|+-..|+.-|+.+++..+-.+
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999999999999999999999999998776443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=2.7e-12  Score=125.92  Aligned_cols=119  Identities=21%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCc
Q 008328           21 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  100 (570)
Q Consensus        21 ~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~  100 (570)
                      .|.-|+..|..|+|+.++.+ -.++... |.+|-|+||-|+..||.+||++||+  .|+++|..|.+|+||||+|+..++
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~--~ganVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGHYEIVKFLIE--FGANVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcchhHHHHHHHh--cCCcccCccCCCCchhhhhhhcCc
Confidence            45567777777777777654 2333333 6677777777777777777777777  677777777777777777777777


Q ss_pred             HHHHHHHHhcCCCCCCcCCCCCCcHHHHHH--HcCCHHHHHHHhh
Q 008328          101 TKIAEVMVNKNRELPSIRGNKGATPLCMAA--LLGHKEMIWYLYS  143 (570)
Q Consensus       101 ~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~  143 (570)
                      ..+++.|++.|+-+....-.++.||..-+-  +.|...|.+||..
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            777777777777666555666777765543  3466677777754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.85  E-value=9e-09  Score=102.18  Aligned_cols=120  Identities=23%  Similarity=0.230  Sum_probs=95.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcH
Q 008328           22 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVT  101 (570)
Q Consensus        22 Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~  101 (570)
                      +..|+..++.--++..-.. +.++..+ +.+..|.||+|+..|+-|+|++++++.....++..|+.|+|+||-|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            5566777766555554443 3444445 7888899999999999999999999655566788889999999999999999


Q ss_pred             HHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 008328          102 KIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV  144 (570)
Q Consensus       102 ~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~  144 (570)
                      .+.++|++.|+.+- ..|..|.||-..|-+.|+.+..-||-++
T Consensus       948 ~vc~~lvdagasl~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhhe-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999876 6888999999999999999988887543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.78  E-value=4.6e-09  Score=108.82  Aligned_cols=100  Identities=26%  Similarity=0.367  Sum_probs=77.6

Q ss_pred             cCCHHHHHHHHhcCccc-hhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc-CCChHHHHHHHcCcHHHHH
Q 008328           28 KGDWDFARNFFNLNPEA-VCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNTALCFAAVSGVTKIAE  105 (570)
Q Consensus        28 ~g~~~~v~~ll~~~~~~-~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~  105 (570)
                      .|...-++-++++.... .+.+ |..|+|+||+|+..|..+++++|++  +|+|++.+|+ .|.||||-|+..|+.|++-
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anik-D~~GR~alH~~~S~~k~~~l~wLlq--hGidv~vqD~ESG~taLHRaiyyG~idca~  103 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIK-DRYGRTALHIAVSENKNSFLRWLLQ--HGIDVFVQDEESGYTALHRAIYYGNIDCAS  103 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHH-HhhccceeeeeeccchhHHHHHHHh--cCceeeeccccccchHhhHhhhhchHHHHH
Confidence            34444466666654433 3444 8888888888888888888888888  7888888886 5888888888888888888


Q ss_pred             HHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328          106 VMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus       106 ~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      .|+.+|..+. .+|++|.+||..-++
T Consensus       104 lLL~~g~SL~-i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  104 LLLSKGRSLR-IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHhcCCceE-EecccCCCHHHHHhh
Confidence            8888888776 688888888887765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.77  E-value=2.5e-08  Score=97.71  Aligned_cols=100  Identities=18%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             ccccccCCChH------HHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccc
Q 008328           81 LALRNKVGNTA------LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED  154 (570)
Q Consensus        81 ~~~~d~~g~Tp------Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~  154 (570)
                      +..+|.+|.|.      ||-+++.|+.+..-.|+..|++.|......|.||||.|++.|+..-+++|.-.|+|++..|.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            44567777664      899999999999999999999999888889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328          155 RIELLVAVIDAGLYDVALDLIQHHPQ  180 (570)
Q Consensus       155 g~t~L~~A~~~~~~~~~~~Ll~~~~~  180 (570)
                      |.||+.+|-..||-++.+.|++..-+
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~~y~  225 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEIQYE  225 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHHHHH
Confidence            99999999999999999999886544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.76  E-value=7.4e-09  Score=107.29  Aligned_cols=85  Identities=21%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      -.|+.|..|+|+||+|+..|..+++++||.+ +.+++.+.-..|+||||.|+..|+.|++-.||.  +|..+..+|++|.
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~--~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLS--KGRSLRIKDKEGL  120 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHh--cCCceEEecccCC
Confidence            3677777788888888888888888877765 666666634567888888888888888888887  6777778888888


Q ss_pred             hHHHHHHH
Q 008328           90 TALCFAAV   97 (570)
Q Consensus        90 TpLh~A~~   97 (570)
                      .||..-++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            88777665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.76  E-value=1.5e-08  Score=100.66  Aligned_cols=103  Identities=22%  Similarity=0.229  Sum_probs=95.3

Q ss_pred             cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328            6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN   85 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d   85 (570)
                      ..|+++-+++.+..|.||+|+..|+.|+|+++|++.+..+....|..|.|+||-|+..++..+.++|++  .|+.+...|
T Consensus       887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvd--agasl~ktd  964 (1004)
T KOG0782|consen  887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVD--AGASLRKTD  964 (1004)
T ss_pred             hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh--cchhheecc
Confidence            357778889999999999999999999999999998887766668999999999999999999999999  899999999


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHhc
Q 008328           86 KVGNTALCFAAVSGVTKIAEVMVNK  110 (570)
Q Consensus        86 ~~g~TpLh~A~~~g~~~iv~~Ll~~  110 (570)
                      ..|.||-.-|-+.|+.+++.+|-.+
T Consensus       965 ~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  965 SKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999998654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.76  E-value=7.6e-09  Score=100.86  Aligned_cols=95  Identities=22%  Similarity=0.218  Sum_probs=79.5

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      +.++..++.+|++.|.+..++.+.-  .|.|++.+|.+.+|+||.|+..|+.+++++|++.....+..+|..|+|||.-|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l--~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFAL--QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHH--hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            4566778889999999888888776  78899999999999999999999999999998876555557889999999999


Q ss_pred             HHcCCHHHHHHHhhccC
Q 008328          130 ALLGHKEMIWYLYSVTK  146 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~  146 (570)
                      ...+|.+++++|-+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            99999999988877554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.2e-08  Score=99.56  Aligned_cols=94  Identities=19%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc-cCCccccccchhhHHHHH
Q 008328           84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV-TKEEDLKEEDRIELLVAV  162 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A  162 (570)
                      ++.++.-++.+|++.|+...++.+.-.|.|+. .+|.+.+|+||.|+..|+.+++++|++. +.+++.+|..|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~-~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLE-TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccccc-ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            34566677888888888888888777788877 5888888888888888888888888875 467888888888888888


Q ss_pred             HHhCcHHHHHHHHhhC
Q 008328          163 IDAGLYDVALDLIQHH  178 (570)
Q Consensus       163 ~~~~~~~~~~~Ll~~~  178 (570)
                      ..-+|.+++++|-+..
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            8888888888776653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.72  E-value=1.5e-08  Score=61.46  Aligned_cols=28  Identities=36%  Similarity=0.531  Sum_probs=15.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhccCCcc
Q 008328          122 GATPLCMAALLGHKEMIWYLYSVTKEED  149 (570)
Q Consensus       122 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~  149 (570)
                      |+||||+||+.|+.|++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.70  E-value=1.5e-08  Score=61.54  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             CCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          294 HSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       294 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                      +|+||||+|+++|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47777777777777777777777777765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.66  E-value=6.6e-08  Score=94.86  Aligned_cols=86  Identities=23%  Similarity=0.234  Sum_probs=56.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           56 ALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        56 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      -||-.++.|+.+..-.||.  .|+++|..+ +.|.||||.|++.|+..-+++|+-+|+|+. ..|.+|+||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~--lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS--LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH--cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCCCCcHHHHHHhcCc
Confidence            3666666676666666666  566666544 346677777777776666666666676665 466667777777766666


Q ss_pred             HHHHHHHhhc
Q 008328          135 KEMIWYLYSV  144 (570)
Q Consensus       135 ~~~v~~Ll~~  144 (570)
                      -++.+-|++.
T Consensus       213 ~~laeRl~e~  222 (669)
T KOG0818|consen  213 HELAERLVEI  222 (669)
T ss_pred             hHHHHHHHHH
Confidence            6666655543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.64  E-value=3.4e-07  Score=96.58  Aligned_cols=123  Identities=21%  Similarity=0.203  Sum_probs=85.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCcc---chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPE---AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~---~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      +.---..|+..|+...|+..++....   .+|.. |.-|+++||.|+.+.|.|++++|++  .+...       ..+|.+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~--~~~~~-------gdALL~   94 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLD--TSSEE-------GDALLL   94 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhc--Ccccc-------chHHHH
Confidence            44456678888888888888875433   34555 7788888888888888888888888  44333       347777


Q ss_pred             HHHcCcHHHHHHHHhcCCCC---------CCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccc
Q 008328           95 AAVSGVTKIAEVMVNKNREL---------PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDL  150 (570)
Q Consensus        95 A~~~g~~~iv~~Ll~~~~~~---------~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~  150 (570)
                      |++.|..++|+.++.+-...         +...-..+.|||.+||..++.|+++.|+++|+.+..
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            88888888888888764322         112233456777777777777777777777766543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.62  E-value=7.1e-08  Score=96.02  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCc
Q 008328           21 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGV  100 (570)
Q Consensus        21 ~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~  100 (570)
                      |||.++...+.+-....+.........+.|..|+||||.|+..|+.+.++.|+.  .++++..+|++|++|||.|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~--a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLS--AGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHh--cCCCccccccccccHHHHHHHcCC
Confidence            366666655555554433332222222225556666666666666666666665  566666666666666666666666


Q ss_pred             HHHHHHHHhc
Q 008328          101 TKIAEVMVNK  110 (570)
Q Consensus       101 ~~iv~~Ll~~  110 (570)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            6655555544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.62  E-value=4.6e-08  Score=61.25  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhccCCccccc
Q 008328          122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKE  152 (570)
Q Consensus       122 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~  152 (570)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666655544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=5.3e-08  Score=60.98  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRN   85 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d   85 (570)
                      +|+||||+|+..|+.+++++|++  .|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~--~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK--HGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH--TTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH--CcCCCCCCC
Confidence            35666666666666666666666  566666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.61  E-value=9.6e-08  Score=95.08  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      -|||+++.....+-...++..-....++.+|..|+||||+|+..|+.+.++.|+..|+++. .+|+.|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-ccccccccHHHHHHHcCC
Confidence            4599999888776555544321456788999999999999999999999999999999987 799999999999999999


Q ss_pred             HHHHHHHhhc
Q 008328          135 KEMIWYLYSV  144 (570)
Q Consensus       135 ~~~v~~Ll~~  144 (570)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9998888765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.47  E-value=6.9e-07  Score=94.29  Aligned_cols=123  Identities=13%  Similarity=0.169  Sum_probs=103.6

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCc--ccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTP--EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      .+.--.-.|+..|+.-.|+..++....  -++|..|.-|+++||.|+.+.+.|++++|++++...        ..+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            344456789999999999999996444  578899999999999999999999999999987653        3489999


Q ss_pred             HHcCCHHHHHHHhhccCCc----------cccccchhhHHHHHHHhCcHHHHHHHHhhCcccc
Q 008328          130 ALLGHKEMIWYLYSVTKEE----------DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA  182 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  182 (570)
                      +..|..+.|+.++.+....          ...-..+.||+.+|+..+++|+++.|+++|..+.
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999999875432          1223457899999999999999999999998874

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.40  E-value=7.4e-07  Score=89.30  Aligned_cols=87  Identities=16%  Similarity=0.055  Sum_probs=42.5

Q ss_pred             HHHHHcCcHHHHHHHHhcCCCC---CCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHH
Q 008328           93 CFAAVSGVTKIAEVMVNKNREL---PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  169 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  169 (570)
                      .-|+...+...+-+|+.+|...   ....+.+|+|+||+||+.|+..+.++|+=+|+|+..+|..|+|+|.||-+.|..+
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqe  708 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQE  708 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHH
Confidence            3344444444444555444321   1123344455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhhCc
Q 008328          170 VALDLIQHHP  179 (570)
Q Consensus       170 ~~~~Ll~~~~  179 (570)
                      ++..|+++|.
T Consensus       709 c~d~llq~gc  718 (749)
T KOG0705|consen  709 CIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHcCC
Confidence            5555555543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.30  E-value=1.6e-06  Score=86.92  Aligned_cols=93  Identities=24%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHccCccccc--ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcC
Q 008328           56 ALHIAAGARRTLFVQELVNLMTPEDLA--LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG  133 (570)
Q Consensus        56 pLh~A~~~g~~~~v~~Ll~~~~~~~~~--~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g  133 (570)
                      -|--|+...++..+-+||.+.....+|  ..+.+|+|+||+||+.|+..+.++|+-+|.|+. .+|..|.|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhcc
Confidence            466777777888888888732223333  345677899999999999999999999999887 68999999999999999


Q ss_pred             CHHHHHHHhhccCCcc
Q 008328          134 HKEMIWYLYSVTKEED  149 (570)
Q Consensus       134 ~~~~v~~Ll~~g~~~~  149 (570)
                      .-|++..|+++|+..+
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999987643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.19  E-value=1.5e-06  Score=93.71  Aligned_cols=126  Identities=15%  Similarity=0.124  Sum_probs=76.2

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      ...|+|.||.++..++.-.++.+++. .+......|.+|.-.+|+ |..++.+.+-+++.....-...+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            45677777777777777777777763 244445556666666666 3344455554444333222235777777777777


Q ss_pred             HHcCCHHHHHHHhhccCCcc------ccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328          130 ALLGHKEMIWYLYSVTKEED------LKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      +.+|+..++..|++.|++..      .....|.|+-..|-.+|+..+.-+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            77777777777776665432      2234466777777777777666666544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.14  E-value=2.3e-06  Score=92.41  Aligned_cols=133  Identities=18%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328            9 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG   88 (570)
Q Consensus         9 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g   88 (570)
                      .........|+|.||+++..+..-+++.+++-.+...... |.+|.-.+|. |..++.+.+-+|+.. .+..++.+|..|
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hf-ca~lg~ewA~ll~~~-~~~ai~i~D~~G  641 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHF-CAALGYEWAFLPISA-DGVAIDIRDRNG  641 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhH-hhhcCCceeEEEEee-cccccccccCCC
Confidence            3445556678888888888888888888877422222222 6667777777 556666666666654 677888888888


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCCc-----CCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKNRELPSI-----RGNKGATPLCMAALLGHKEMIWYLYSV  144 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~TpLh~A~~~g~~~~v~~Ll~~  144 (570)
                      +||||+|+..|+..++..|++-|++....     ....|.|+-..|..+|+..+.-+|-+.
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            88888888888888888888776654322     334577888888888888877777664

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.11  E-value=3.1e-06  Score=92.17  Aligned_cols=85  Identities=22%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      .|.|+||.|+..|..-++++|+++|++++ ..|..|.||||.+...|+...+..|+++|++.+..+.+|.+|++.|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45666666666666666666666666655 56666666666666666666666666666666666666666666665554


Q ss_pred             cHHHHH
Q 008328          167 LYDVAL  172 (570)
Q Consensus       167 ~~~~~~  172 (570)
                      +.+++-
T Consensus       734 ~~d~~~  739 (785)
T KOG0521|consen  734 NADIVL  739 (785)
T ss_pred             cccHHH
Confidence            444433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=5.2e-06  Score=79.28  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=40.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 008328           56 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE  113 (570)
Q Consensus        56 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~  113 (570)
                      -|..||+.|..+.|++|++  .|.++|..|....+||.+|+..||.++|++|+++|+-
T Consensus        39 elceacR~GD~d~v~~LVe--tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVE--TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHH--hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            3667777777777777777  6777777777777777777777777777777777764

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.03  E-value=9.6e-06  Score=70.32  Aligned_cols=68  Identities=16%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             ccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC
Q 008328           79 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK  146 (570)
Q Consensus        79 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~  146 (570)
                      .++|.+|..|.|||+.|+..|+.+.+.+|+.+|.......|..|.+++.+|-+.|+.+.++.|.+.-.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            46677777777777777777777777777777733333667777777777777777777777666543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.95  E-value=7.1e-06  Score=89.42  Aligned_cols=80  Identities=16%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcC
Q 008328          120 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK  199 (570)
Q Consensus       120 ~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  199 (570)
                      ..|.|+||.|+..|...++++|++.|+++|..|..|++|+|.+...|+...+..+++++++. +..+.+|.+|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhhh
Confidence            45777888888888888888888888888888888888888888888888888888877777 57778888888887655


Q ss_pred             C
Q 008328          200 P  200 (570)
Q Consensus       200 ~  200 (570)
                      .
T Consensus       733 ~  733 (785)
T KOG0521|consen  733 A  733 (785)
T ss_pred             c
Confidence            3

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.92  E-value=1.9e-05  Score=68.55  Aligned_cols=67  Identities=19%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCc-ccccccccCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 008328           44 AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP-EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE  113 (570)
Q Consensus        44 ~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~-~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~  113 (570)
                      +++.+ |..|+|||++|+..|+.+.+.+|+.  +| +.+...|..|.+++.+|-+.|..+++..|-+...+
T Consensus         4 ~in~r-D~fgWTalmcaa~eg~~eavsyllg--rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINAR-DAFGWTALMCAAMEGSNEAVSYLLG--RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             Cccch-hhhcchHHHHHhhhcchhHHHHHhc--cCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            34555 6667777777777777777777766  55 66666677777777777777777766666665443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.77  E-value=5.8e-05  Score=72.34  Aligned_cols=57  Identities=21%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCc
Q 008328           91 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE  148 (570)
Q Consensus        91 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~  148 (570)
                      -|..||+.|+.+.|+.|++.|.++| .+|....+||.+|+..||.++|++|+++|+--
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            4555556666666666666555555 45555555666666666666666666655533

>smart00248 ANK ankyrin repeats

Probab=96.64  E-value=0.0032  Score=36.94  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=11.5

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCC
Q 008328           88 GNTALCFAAVSGVTKIAEVMVNKNR  112 (570)
Q Consensus        88 g~TpLh~A~~~g~~~iv~~Ll~~~~  112 (570)
                      |.||+|+|+..++.++++.|++++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3444444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.56  E-value=0.0036  Score=36.66  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=13.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328          122 GATPLCMAALLGHKEMIWYLYSVTKE  147 (570)
Q Consensus       122 g~TpLh~A~~~g~~~~v~~Ll~~g~~  147 (570)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.05  E-value=0.0075  Score=60.43  Aligned_cols=64  Identities=16%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             cHHHHHHHHHhCCccccc-----ccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhh
Q 008328          273 NVEFLMVLIQMYPNLIWK-----VDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAG  340 (570)
Q Consensus       273 ~~~~v~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~  340 (570)
                      -.+.+++|.+++.+.+..     .+..--|+||+|+..|..++|.+||+.|+|+..    +|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~----kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST----KDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh----cccCCCCcccccc
Confidence            366788888877764322     234467999999999999999999999999985    9999999999887

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.85  E-value=0.012  Score=59.13  Aligned_cols=63  Identities=13%  Similarity=0.001  Sum_probs=51.6

Q ss_pred             HHHHHHHHhcCCCCCC-----cCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH
Q 008328          101 TKIAEVMVNKNRELPS-----IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI  163 (570)
Q Consensus       101 ~~iv~~Ll~~~~~~~~-----~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  163 (570)
                      ...+++|.+++.+.|.     ..+..-.|+||+|+..|..++|.+||+.|+|+..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5677888888776642     13444678999999999999999999999999999999999988776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.67  E-value=0.21  Score=45.30  Aligned_cols=115  Identities=12%  Similarity=0.066  Sum_probs=80.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCC----CCCCcCCCCCCcHHHHHHH
Q 008328           56 ALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNR----ELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        56 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~TpLh~A~~  131 (570)
                      .|--|+..-+.+-+.-++.  ...       +-.+++-+|..++..+++-+|+.+-.    ++...  ..+.--+.++..
T Consensus       156 sledAV~AsN~~~i~~~Vt--dKk-------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVT--DKK-------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhc--chH-------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHh
Confidence            4566777777777666665  222       23578899998999999999997632    22211  112223444443


Q ss_pred             --cCCHHHHHHHhhcc-CCcccc---ccchhhHHHHHHHhCcHHHHHHHHhhCccc
Q 008328          132 --LGHKEMIWYLYSVT-KEEDLK---EEDRIELLVAVIDAGLYDVALDLIQHHPQL  181 (570)
Q Consensus       132 --~g~~~~v~~Ll~~g-~~~~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  181 (570)
                        +.+..+.++.+++| +++|.+   -..|.|.|.-|+..++.+++..|+++|+..
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence              34678899999999 677654   467999999999999999999999999743

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.48  E-value=0.97  Score=39.94  Aligned_cols=46  Identities=20%  Similarity=0.187  Sum_probs=40.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          264 LLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       264 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                      -|..|+..|-...+...+++|.+..       .++|-.|+.+++.+++.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHHHhhc
Confidence            5778999999999999999998832       289999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.12  E-value=1.1  Score=39.60  Aligned_cols=44  Identities=16%  Similarity=0.064  Sum_probs=25.1

Q ss_pred             HHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHH
Q 008328          126 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI  175 (570)
Q Consensus       126 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  175 (570)
                      |..|+..|-...+...+++|.+++.      +.|..|+..++..++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            4556666666666666666655442      5566666666655555544

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.90  E-value=1.3  Score=40.31  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc----CCChHHHHHHH
Q 008328           22 LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK----VGNTALCFAAV   97 (570)
Q Consensus        22 Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~----~g~TpLh~A~~   97 (570)
                      |--|+..-+.+.+..+....         .+-.+++-+|..++..+++.+|+..   -.....|.    .+.--+-|+..
T Consensus       157 ledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~---f~ft~~dv~~~~~~~ydieY~LS  224 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSK---FNFTKQDVASMEKELYDIEYLLS  224 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhh---cceecchhhhcCcchhhHHHHHh
Confidence            55677777777665554321         2235789999999999999999983   22222221    12223444443


Q ss_pred             c--CcHHHHHHHHhcCC-CCCC--cCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328           98 S--GVTKIAEVMVNKNR-ELPS--IRGNKGATPLCMAALLGHKEMIWYLYSVTKE  147 (570)
Q Consensus        98 ~--g~~~iv~~Ll~~~~-~~~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~  147 (570)
                      .  .+..++++.+++|- +++.  .+-+.|.|-|.-|+..++.|++..|+++|+-
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            3  46789999999984 3332  3567899999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.21  E-value=29  Score=34.44  Aligned_cols=127  Identities=9%  Similarity=-0.019  Sum_probs=77.8

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhc-CccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc-ccccCCChH
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNL-NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA-LRNKVGNTA   91 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~Tp   91 (570)
                      .|.+|.-.|..+.+.++.+....+++. .+.....-.|..|+-.+-...+.+..+-...+++...|.-.. ..|..|.-.
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            366777788888888888887777764 122222223778888888888888777666666543222222 456777777


Q ss_pred             HHHHHHcCcHHHHHHHHhc----CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHh
Q 008328           92 LCFAAVSGVTKIAEVMVNK----NRELPSIRGNKGATPLCMAALLGHKEMIWYLY  142 (570)
Q Consensus        92 Lh~A~~~g~~~iv~~Ll~~----~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  142 (570)
                      +..+...+..+-...+++.    -..+  ..|..|...+..+...+..+..+.++
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L--~~d~~gn~Vvq~~l~~~~~~~~~~i~  149 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVEL--VKDQNGNHVIQKCIEKFPPEDLQFII  149 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHH--hhcccccHHHHHHHHhCCHHHHHHHH
Confidence            7777777664444333332    1122  36777777777777666655555444

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.97  E-value=1.6  Score=32.93  Aligned_cols=46  Identities=22%  Similarity=0.221  Sum_probs=22.9

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 008328           91 ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV  144 (570)
Q Consensus        91 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~  144 (570)
                      .+..|+..|+.|+++.+++.+ .+.       ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            445555555555555555433 110       2345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.84  E-value=1.3  Score=33.42  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh
Q 008328          263 RLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL  317 (570)
Q Consensus       263 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  317 (570)
                      .-+..|+..|+.|+++.+++.+..     +   ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            467899999999999999976522     1   4579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.42  E-value=22  Score=35.23  Aligned_cols=153  Identities=8%  Similarity=-0.074  Sum_probs=85.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcC-ccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCc-ccccccccCCChH
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNLN-PEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP-EDLALRNKVGNTA   91 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~-~~~~~~d~~g~Tp   91 (570)
                      .|..|.-.+......+..+....+++.- +.......|..|.-.+--+...+..+....+++...+ ..--..|..|+..
T Consensus        53 ~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~V  132 (322)
T cd07920          53 VDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHV  132 (322)
T ss_pred             cCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHH
Confidence            3566777777778888777665555432 2222223377888888888888776665555553222 2223568889999


Q ss_pred             HHHHHHcCcHHHHHHHHhc----CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc---cCCccccccchhhHHHHHHH
Q 008328           92 LCFAAVSGVTKIAEVMVNK----NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV---TKEEDLKEEDRIELLVAVID  164 (570)
Q Consensus        92 Lh~A~~~g~~~iv~~Ll~~----~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~  164 (570)
                      +..+...+..+..+.+++.    -.++  ..+..|...+.-.......+..+.+++.   ....-..|..|...+..+..
T Consensus       133 vq~~l~~~~~~~~~~i~~~l~~~~~~l--~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~  210 (322)
T cd07920         133 IQKCIEKFPPEDLQFIIDAFKGNCVAL--STHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLE  210 (322)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHH--HcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHh
Confidence            9888887776655555432    2222  2466676666666665544333333221   01111234445555555555


Q ss_pred             hCcH
Q 008328          165 AGLY  168 (570)
Q Consensus       165 ~~~~  168 (570)
                      .+..
T Consensus       211 ~~~~  214 (322)
T cd07920         211 LGDP  214 (322)
T ss_pred             cCCH
Confidence            4443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	570
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 21  PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 78
           PLH+A+  G     +N      +P    V++    +T LH+AA A  T   + L  L   
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKV----ETPLHMAARAGHTEVAKYL--LQNK 70
Query: 79  EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
             +  + K   T L  AA  G T + ++++  N   P++    G TPL +AA  GH E +
Sbjct: 71  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 129
Query: 139 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH--HPQLAMARDGNGETALHV 195
             L      +    +     L      G   VA  L++   HP    A   NG T LHV
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHV 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	570
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-07
2rfa_A	232	Transient receptor potential cation channel subfa	9e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	5e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
2pnn_A	273	Transient receptor potential cation channel subfa	4e-10
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	8e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELVNLMTP 78
            LHLA +  +              +     +N    T LH+A    +    + L+     
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC- 69

Query: 79  EDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSI---RGNKGATPLCMAALLG 133
            D  LR+  GNT L  A   G      V+        L SI       G T L +A++ G
Sbjct: 70  -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 134 HKEMIWYLYSVTKEEDLKEEDRIE----LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 189
           +  ++  L  V+   D+  ++       L +AV D    D+   L++    +       G
Sbjct: 129 YLGIVELL--VSLGADVNAQEPCNGRTALHLAV-DLQNPDLVSLLLKCGADVN-RVTYQG 184

Query: 190 ETALHVLARK 199
            +   +   +
Sbjct: 185 YSPYQLTWGR 194

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 49  ISRNQDTALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEV 106
           ++ + D+ LH+A          E++  +  +   L  +N +  T L  A ++   +IAE 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 107 MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS----VTKEEDLKEEDRIE---LL 159
           ++    + P +R  +G TPL +A   G    +  L            LK  +      L 
Sbjct: 64  LLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 160 VAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
           +A I  G   +   L+     +      NG TALH+
Sbjct: 123 LASIH-GYLGIVELLVSLGADVNAQEPCNGRTALHL 157

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 26/148 (17%)

Query: 21  PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL---- 72
           PLHLA  +G              P    +  + N +  T LH+A+       V+ L    
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 73  --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 126
             VN             G TAL  A       +  +++    + N         +G +P 
Sbjct: 141 ADVNAQE-------PCNGRTALHLAVDLQNPDLVSLLLKCGADVN-----RVTYQGYSPY 188

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEED 154
            +        +   L  +T E      +
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPE 216

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMVNKNRELPS------IRGNKGATPLCMAALLGHKEMI 138
            + G++ L  A +     +   ++   R++         + N   TPL +A +    E+ 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVI---RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 139 WYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQH-----HPQLAMARDGNGE 190
             L  +    D +  D      L +A    G       L Q         +  A + NG 
Sbjct: 62  EAL--LGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 191 TALHVLARK 199
           T LH+ +  
Sbjct: 119 TCLHLASIH 127

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 1e-13
 Identities = 52/190 (27%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
           PLH+A+  G     +N      +P       +   +T LH+AA A  T   + L      
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKAK 72

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132
           VN         + K   T L  AA  G T + ++++  N   P++    G TPL +AA  
Sbjct: 73  VNA--------KAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAARE 123

Query: 133 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 189
           GH E +  L    KE       +     L VA    G   VA  L++       A   NG
Sbjct: 124 GHVETVLALLE--KEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHP-NAAGKNG 179

Query: 190 ETALHVLARK 199
            T LHV    
Sbjct: 180 LTPLHVAVHH 189

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 16/184 (8%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 78
           PLH+AA +   + AR+      +  A     S    T LH+AA       V  L++    
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAE----SVQGVTPLHLAAQEGHAEMVALLLS--KQ 268

Query: 79  EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
            +  L NK G T L   A  G   +A+V++             G TPL +A+  G+ +++
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLV 327

Query: 139 WYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
            +L  +  + D+  + ++    L  A    G  D+   L+++          +G T L +
Sbjct: 328 KFL--LQHQADVNAKTKLGYSPLHQAA-QQGHTDIVTLLLKNGASPN-EVSSDGTTPLAI 383

Query: 196 LARK 199
             R 
Sbjct: 384 AKRL 387

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.5 bits (166), Expect = 3e-12
 Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 28/190 (14%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
           PLH+AA  G    A        +P A      +N  T LH+A        V+ L      
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAA----GKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132
            +             G T L  AA     ++A  ++       +    +G TPL +AA  
Sbjct: 205 PHS--------PAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQE 255

Query: 133 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 189
           GH EM+  L  ++K+ +    ++     L +   + G   VA  LI+H   +  A    G
Sbjct: 256 GHAEMVALL--LSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVD-ATTRMG 311

Query: 190 ETALHVLARK 199
            T LHV +  
Sbjct: 312 YTPLHVASHY 321

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 8e-10
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 22/157 (14%)

Query: 52  NQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
           +  T LH+A+       V+ L       N        + N    T L  AA +G T++A+
Sbjct: 13  SGLTPLHVASFMGHLPIVKNLLQRGASPN--------VSNVKVETPLHMAARAGHTEVAK 64

Query: 106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAV 162
            ++    +  + +     TPL  AA +GH  M+  L  +    +           L +A 
Sbjct: 65  YLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLL--LENNANPNLATTAGHTPLHIAA 121

Query: 163 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
              G  +  L L++     A      G T LHV A+ 
Sbjct: 122 -REGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKY 156

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 8e-10
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 29/188 (15%)

Query: 21  PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
           PLHLAA +G  +      +   N        +++  T LH+ A          L      
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHGVM 303

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132
           V+           ++G T L  A+  G  K+ + ++    +  + +   G +PL  AA  
Sbjct: 304 VDA--------TTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQ 354

Query: 133 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVA--LDLIQHHPQLAMARDG 187
           GH +++  L  +       E        L +A    G   V   L ++       +  D 
Sbjct: 355 GHTDIVTLL--LKNGASPNEVSSDGTTPLAIAK-RLGYISVTDVLKVVTDETSFVLVSDK 411

Query: 188 NGETALHV 195
           +  +    
Sbjct: 412 HRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 8/119 (6%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
             + G T L  A+  G   I + ++ +    P++   K  TPL MAA  GH E+  YL  
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYL-- 66

Query: 144 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           +  +  +  + + +   L  A    G  ++   L++++          G T LH+ AR+
Sbjct: 67  LQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLLLENNANPN-LATTAGHTPLHIAARE 123

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 117 IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALD 173
             G  G TPL +A+ +GH  ++  L    +       +      L +A   AG  +VA  
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAAR-AGHTEVAKY 65

Query: 174 LIQHHPQLAMARDGNGETALHVLARK 199
           L+Q+  ++  A+  + +T LH  AR 
Sbjct: 66  LLQNKAKV-NAKAKDDQTPLHCAARI 90

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.1 bits (170), Expect = 7e-13
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 48/194 (24%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
           PLHLAA                  V + +                LH A         + 
Sbjct: 61  PLHLAAGYN-----------RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
           L      VN          +    T L  AA     ++  ++++   + P++    G + 
Sbjct: 110 LLKHGACVNA--------MDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSA 160

Query: 126 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 185
           + MA     +E + Y +               LL A  +A L  V   L          +
Sbjct: 161 VDMAPTPELRERLTYEFKGHS-----------LLQAAREADLAKVKKTLALEII--NFKQ 207

Query: 186 DGNGETALHVLARK 199
             + ETALH     
Sbjct: 208 PQSHETALHCAVAS 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 36/210 (17%), Positives = 59/210 (28%), Gaps = 52/210 (24%)

Query: 21  PLHLAALKGDWDFARNFFNL------NPEAVCVRISRNQDTALHIAAGARRTLFVQELVN 74
           PLH AA K   +       L      +P  V    + +  +A+ +A        +     
Sbjct: 127 PLHEAASKNRVEVCS----LLLSHGADPTLV----NCHGKSAVDMAPTPELRERLTYEFK 178

Query: 75  LMTPEDLALRNKV-------------------GNTALCFAAVSGVTKIAEVM-------V 108
             +    A    +                     TAL  A  S   K  +V         
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDA 165
           N N      +     TPL +AA   H +++  L        +   D +    L  A +  
Sbjct: 239 NVN-----EKNKDFMTPLHVAAERAHNDVMEVL--HKHGAKMNALDSLGQTALHRAALA- 290

Query: 166 GLYDVALDLIQHHPQLAMARDGNGETALHV 195
           G       L+ +    +      G TA  +
Sbjct: 291 GHLQTCRLLLSYGSDPS-IISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 20  APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA--GARRTLFVQEL----- 72
           + L  AA + D    +    L  E +  +  ++ +TALH A      +   V EL     
Sbjct: 181 SLLQ-AAREADLAKVKKT--LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237

Query: 73  --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130
             VN         +NK   T L  AA      + EV+     +  +   + G T L  AA
Sbjct: 238 ANVNE--------KNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAA 288

Query: 131 LLGHKEMIWYLYS 143
           L GH +    L S
Sbjct: 289 LAGHLQTCRLLLS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 77  TPEDLA-------LRNKVGNTALCFAAVSG-VTKIAEVMVNKNRELPSIRGNKGATPLCM 128
           +  DLA       L  +     L  AA SG   K+  ++   N         + +TPL +
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHL 64

Query: 129 AALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMAR 185
           AA      ++  L  +    D+  +D+     L  A    G Y+V   L++H   +  A 
Sbjct: 65  AAGYNRVRIVQLL--LQHGADVHAKDKGGLVPLHNACS-YGHYEVTELLLKHGACVN-AM 120

Query: 186 DGNGETALHVLARK 199
           D    T LH  A K
Sbjct: 121 DLWQFTPLHEAASK 134

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 24/188 (12%)

Query: 19  YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
                    KG          L P       + + D  LH AA      +++E       
Sbjct: 46  DTNWWKGTSKGRTG-------LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132
           VN          +K G+TAL +A   G   I E++  +     + +   G T L  AA  
Sbjct: 99  VN--------GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 133 GHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGET 191
           G+ +++  L +     DL+  + ++   +A  +A    +               +     
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMAT-NAACASLLKKKQGTDAVRT-LSNAEDYL 208

Query: 192 ALHVLARK 199
                  +
Sbjct: 209 DDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 16/178 (8%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
            +  A    +            E   + I+   DT         RT  +           
Sbjct: 15  KVFRALYTFEPRTPDEL--YIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN-------Y 65

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
           +A + +  +  L  AA  G        ++      +     G+T L  A   GHK+++  
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 141 LYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
           L++     +L +++++    L  A    G  D+   L+    +    R+   + A  +
Sbjct: 125 LFT-QPNIELNQQNKLGDTALHAAAWK-GYADIVQLLLAKGART-DLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 14/153 (9%)

Query: 50  SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVN 109
            +     +  A          EL   +   D+     + +T        G T +      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDEL--YIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 110 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAG 166
             +            PL  AA  G+   +     +     +   D+     L  A    G
Sbjct: 67  AEQA------ESIDNPLHEAAKRGNLSWLREC--LDNRVGVNGLDKAGSTALYWACHG-G 117

Query: 167 LYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
             D+   L          ++  G+TALH  A K
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 22/123 (17%)

Query: 21  PLHLAALKGDWDFAR---NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL----- 72
            L+ A   G  D         N+         ++  DTALH AA       VQ L     
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELNQQ----NKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 73  -VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
             +L        RN     A   A  +    + +     +    ++   +       + L
Sbjct: 165 RTDL--------RNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDSDL 215

Query: 132 LGH 134
             H
Sbjct: 216 EHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 9/125 (7%)

Query: 75  LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH 134
           +  P    ++   G   +  A  +   +  + +  +  +      +   T        G 
Sbjct: 1   MSKPPPKPVKP--GQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGR 57

Query: 135 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 194
             +I   Y   + E         L  A    G      + + +   +    D  G TAL+
Sbjct: 58  TGLIPSNYVAEQAES----IDNPLHEAAKR-GNLSWLRECLDNRVGV-NGLDKAGSTALY 111

Query: 195 VLARK 199
                
Sbjct: 112 WACHG 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            LH A   G           + E V   +              + LHIAA A     V+ 
Sbjct: 43  ALHWACSAG-----------HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
           L+       +   N+ G T L +AA     +IA +++         + +  AT +  AA 
Sbjct: 92  LLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAA 148

Query: 132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGET 191
            G+ +M+  L       ++++ +    L    D    + A  L+     +    +   +T
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKT 207

Query: 192 ALHVLA 197
            L V  
Sbjct: 208 PLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.1 bits (156), Expect = 9e-12
 Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 36/201 (17%)

Query: 14  NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGAR 64
            C ++    +LA                 E     ++          +  TALH A  A 
Sbjct: 3   GCVSNIMICNLAYSGK-----------LDELKERILADKSLATRTDQDSRTALHWACSAG 51

Query: 65  RTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR 118
            T  V+ L      VN         ++  G + L  AA +G  +I + ++ K   + +  
Sbjct: 52  HTEIVEFLLQLGVPVND--------KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAV 102

Query: 119 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178
              G TPL  AA     E+   L       D K+      +      G   +   L+ + 
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 179 PQLAMARDGNGETALHVLARK 199
                 +D  G T LH+   +
Sbjct: 163 ASTN-IQDTEGNTPLHLACDE 182

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 36/259 (13%), Positives = 75/259 (28%), Gaps = 60/259 (23%)

Query: 88  GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
                  A    + ++ E ++                   T L  A   GH E++ +L  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLAT-----RTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 144 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200
                 + ++D      L +A   AG  ++   L+     +  A + NG T LH  A K 
Sbjct: 62  --LGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKN 117

Query: 201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 260
                                            +   +        LL   +        
Sbjct: 118 -------------------------------RHEIAVM--------LLEGGANPDAKDHY 138

Query: 261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 320
            +  +  A   GN++ + +L+    +   + D    +  H+A    + +    +   GA 
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGAS 197

Query: 321 KDLIASYKDENNNNMLHLA 339
             +    +++     L +A
Sbjct: 198 IYI----ENKEEKTPLQVA 212

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.2 bits (160), Expect = 5e-12
 Identities = 37/193 (19%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRIS---------RNQDTALHIAAGARRTLFVQE 71
           PLHLA +              P  V + ++         R+  TA H+A   R    ++ 
Sbjct: 49  PLHLAVITT-----------LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

Query: 72  LVNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129
           L++       DL  RN  G TAL  A  +   +  ++++ +  ++ ++    G +PL  A
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157

Query: 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARD 186
                  M+  L       ++  +       L  A    GL  +   L++     +  ++
Sbjct: 158 VENNSLSMVQLLLQ--HGANVNAQMYSGSSALHSASGR-GLLPLVRTLVRSGADSS-LKN 213

Query: 187 GNGETALHVLARK 199
            + +T L V   +
Sbjct: 214 CHNDTPLMVARSR 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 7e-11
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRI---SRNQDTALHIAAGARRTLFVQEL----- 72
           PLH+A ++G+        NL  +     +   +  + T LH+A        V+ L     
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70

Query: 73  -VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS---IRGNKGATPLCM 128
                        ++ G TA   A           +++           R   G T L +
Sbjct: 71  SPMA--------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 129 AALLGHKEMIWYLYSV---TKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 185
           A     +E +  L          D+K   R  L+ AV +     +   L+QH   +  A+
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSG-RSPLIHAVEN-NSLSMVQLLLQHGANVN-AQ 179

Query: 186 DGNGETALHVLARK 199
             +G +ALH  + +
Sbjct: 180 MYSGSSALHSASGR 193

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 17/159 (10%)

Query: 52  NQDTALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMV- 108
           + DT LHIA        V  LVNL      +L + N +  T L  A ++ +  +  ++V 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 109 ---NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV--TKEEDLKEEDRIE---LLV 160
              +            G T   +A        +  L         DL+  +      L V
Sbjct: 68  AGASPM-----ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 161 AVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           AV      +    L++    +      +G + L      
Sbjct: 123 AVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 22/129 (17%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMV--------NKNRELPSIRGNKGATPLCMAALLGHKE 136
           ++ G+T L  A V G       +V          +     I  N   TPL +A +     
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----IYNNLRQTPLHLAVITTLPS 60

Query: 137 MIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAM---ARDGNGE 190
           ++  L  VT        DR       +A            L+       +   AR+ +G 
Sbjct: 61  VVRLL--VTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 191 TALHVLARK 199
           TALHV    
Sbjct: 118 TALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 44/143 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD----------TALHIAAGARRTLFVQ 70
            LH+A                 E V + + R  D          + L  A        VQ
Sbjct: 119 ALHVAVNTE-----------CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167

Query: 71  EL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGN 120
            L      VN         +   G++AL  A+  G+  +   +V    + +     ++  
Sbjct: 168 LLLQHGANVNA--------QMYSGSSALHSASGRGLLPLVRTLVRSGADSS-----LKNC 214

Query: 121 KGATPLCMAALLGHKEMIWYLYS 143
              TPL +A      +++    +
Sbjct: 215 HNDTPLMVARSRRVIDILRGKAT 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 44/208 (21%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
            LH     G             E + + +             +T L  A   R    +  
Sbjct: 141 ALHWCVGLG---------PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 72  LVNLMTPE---DLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGAT 124
           +++ +  +    L   NK GN+ L +A +     +A   V    + N     +  N+   
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-----MEDNEHTV 246

Query: 125 PLCMAALLGHKEMIWYLYSVTKEEDLKEE-------------DRIELLVAVIDAGLYDVA 171
           PL ++       +   L   T    ++                 ++ + A  D    +V 
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 172 LDLIQHHPQLAMARDGNGETALHVLARK 199
             L +   ++       G        +K
Sbjct: 307 QLLQEKLDEVV-RSLNTGAGGAVKRKKK 333

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 32/197 (16%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRI-SRNQD--TALHIAAGARRTLFVQEL----- 72
           PL  A    + +      +  P    +R+   N+   + LH A                 
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 73  -VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL------------PSIRG 119
            VN+         +      L  +  + +  + + ++ K                     
Sbjct: 236 DVNM--------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 120 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHH 178
                 +  AA    +E++  L     E            +          V    +   
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK-AAPAVKRMKLAPS 346

Query: 179 PQLAMARDGNGETALHV 195
             +   R  +   +  V
Sbjct: 347 APVR-TRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 33/192 (17%), Positives = 56/192 (29%), Gaps = 44/192 (22%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            +H+AA KG             + V   I              TALH+A         + 
Sbjct: 23  KIHVAARKG-----------QTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
           L +    E  +L +  G   +  A ++  T +   +V            +G  P  +   
Sbjct: 72  LAS--VGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNE 120

Query: 132 LGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDAGLY-DVALDLIQHHPQLAMARDG 187
              +E+         E     +    +  L   V     Y ++   L+Q       A+D 
Sbjct: 121 CDEREVN--------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDK 171

Query: 188 NGETALHVLARK 199
             ET L      
Sbjct: 172 ADETPLMRAMEF 183

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 30/151 (19%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
             +H+AA   +T  V+ L                ++N+ G TAL  A   G    A+ + 
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVSPT--------IQNRFGCTALHLACKFGCVDTAKYLA 73

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY 168
           +            G  P+ +A +    +++  L         KE  ++   +        
Sbjct: 74  SVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGA-----KERGQMPESLLNE-CDER 124

Query: 169 DVALDLIQHHPQLAMARDGNGETALHVLARK 199
           +V              +   G+TALH     
Sbjct: 125 EVNEIGSH-------VKHCKGQTALHWCVGL 148

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 10/116 (8%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
            +      +  AA  G T     ++      P+I+   G T L +A   G  +   YL  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYL-- 72

Query: 144 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
            +  E        + +   + A   D+ + L++            G+    +L   
Sbjct: 73  ASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNEC 121

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 21  PLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL---- 72
           PLH AA  G  D          N++        S +Q T L  AA       V+ L    
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANID------TCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 73  --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130
             V+         ++  G+T L  AA  G  ++ + +++  +   + + + G TP+  A 
Sbjct: 68  ALVDP--------KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 131 LLGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDAGLYDVALDLIQHHPQLAMARDG 187
              H +++  L S  K  D+   D    I L  A    G  D+A  L+     L  A + 
Sbjct: 120 EYKHVDLVKLLLS--KGSDINIRDNEENICLHWAAFS-GCVDIAEILLAAKCDLH-AVNI 175

Query: 188 NGETALHVLARK 199
           +G++ LH+ AR+
Sbjct: 176 HGDSPLHIAARE 187

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 3e-10
 Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 37/195 (18%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
           PL  AA              + EAV   I              T LH+AA       VQ 
Sbjct: 47  PLMEAAENN-----------HLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 127
           L++     D+  ++  G T + +A       + ++++    + N     IR N+    L 
Sbjct: 96  LLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-----IRDNEENICLH 149

Query: 128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMA 184
            AA  G  ++   L +   + DL   +      L +A  +   YD  +  +     +   
Sbjct: 150 WAAFSGCVDIAEILLA--AKCDLHAVNIHGDSPLHIAARE-NRYDCVVLFLSRDSDVT-L 205

Query: 185 RDGNGETALHVLARK 199
           ++  GET L   +  
Sbjct: 206 KNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 1e-07
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
            ++   + L  AA +G   I  ++V    N +            TPL  AA   H E + 
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANID-----TCSEDQRTPLMEAAENNHLEAVK 61

Query: 140 YLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 198
           YL       D K+ +    L +A    G Y+V   L+ +       +D  G T +     
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 199 K 199
            
Sbjct: 121 Y 121

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.0 bits (126), Expect = 1e-07
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 33/174 (18%)

Query: 39  NLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTAL 92
           ++N +       +N+ + LH AA A        L      ++          ++   T L
Sbjct: 1   HMNFKME----HQNKRSPLHAAAEAGHVDICHMLVQAGANID--------TCSEDQRTPL 48

Query: 93  CFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE 148
             AA +   +  + ++      +      +  +G+T L +AA  GH E++ YL S   + 
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSN-GQM 102

Query: 149 DLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           D+  +D      ++ A       D+   L+     +   RD      LH  A  
Sbjct: 103 DVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFS 154

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 31/134 (23%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
           P+  A               + + V + +S+  D           LH AA +      + 
Sbjct: 114 PMIWATEYK-----------HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 127
           L+      DL   N  G++ L  AA         + +    +       ++  +G TPL 
Sbjct: 163 LLAAKC--DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-----LKNKEGETPLQ 215

Query: 128 MAALLGHKEMIWYL 141
            A+L         +
Sbjct: 216 CASLNSQVWSALQM 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 42/213 (19%)

Query: 4   LKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQDTALHI 59
           ++ L   +  +  + ++P+H AA+ G     RN       +N       I+ +  + LH 
Sbjct: 45  IRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN------IITADHVSPLHE 98

Query: 60  AAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----N 109
           A        V+ L      VN              +T L  A VSG      +++    +
Sbjct: 99  ACLGGHLSCVKILLKHGAQVNG--------VTADWHTPLFNACVSGSWDCVNLLLQHGAS 150

Query: 110 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAG 166
              E      +  A+P+  AA  GH E +  L  +    ++  +       L +A  +  
Sbjct: 151 VQPE------SDLASPIHEAARRGHVECVNSL--IAYGGNIDHKISHLGTPLYLACEN-Q 201

Query: 167 LYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                  L++    +   +    ++ LH + R 
Sbjct: 202 QRACVKKLLESGADVNQGKG--QDSPLHAVVRT 232

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 23/194 (11%), Positives = 51/194 (26%), Gaps = 71/194 (36%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR--------NQDTALHIAAGARRTLFVQEL 72
           PL  A + G           + + V + +          +  + +H AA       V  L
Sbjct: 128 PLFNACVSG-----------SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK----NRELPSIRGNKGATPLCM 128
           +      ++  +     T L  A  +      + ++      N+      G    +PL  
Sbjct: 177 IAYGG--NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ------GKGQDSPLHA 228

Query: 129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLV---AVIDAGLYDVALDLIQHHPQLAMAR 185
                 +E+                    LL+   A                      A+
Sbjct: 229 VVRTASEEL------------------ACLLMDFGADTQ-------------------AK 251

Query: 186 DGNGETALHVLARK 199
           +  G+  + ++  +
Sbjct: 252 NAEGKRPVELVPPE 265

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 44/137 (32%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
           P+H AA +G           + E V   I+   +         T L++A   ++   V++
Sbjct: 160 PIHEAARRG-----------HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L      VN         + K  ++ L     +   ++A +++    +        +  +
Sbjct: 209 LLESGADVN---------QGKGQDSPLHAVVRTASEELACLLMDFGADTQ-----AKNAE 254

Query: 122 GATPLCMAALLGHKEMI 138
           G  P+ +         +
Sbjct: 255 GKRPVELVPPESPLAQL 271

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 22/157 (14%)

Query: 55  TALHIAAGARRTLFVQEL-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
             LH A        VQEL       +          +++ G   L ++      +I   +
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQ--------KDQDGRIPLHWSVSFQAHEITSFL 55

Query: 108 VNK--NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAV 162
           ++K  N  L     + G TP  +A  +G+ E++  LY    + DL +        L +AV
Sbjct: 56  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115

Query: 163 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                ++V+  LI++   +   +D   +  LH  A  
Sbjct: 116 GK-KWFEVSQFLIENGASVR-IKDKFNQIPLHRAASV 150

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 43/201 (21%)

Query: 21  PLHLAALKGDWDFARNFF-----NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL- 72
           PLH A ++ ++   +         L          ++QD    LH +   +       L 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLL--------QKDQDGRIPLHWSVSFQAHEITSFLL 56

Query: 73  -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV------NKNRELPSIRGNK 121
                VNL    D       G T    A   G  ++ + +       + N        N+
Sbjct: 57  SKMENVNLDDYPD-----DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQ 106

Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHH 178
           G T L +A      E+  +L        ++ +D+     L  A    G   +   L    
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIE--NGASVRIKDKFNQIPLHRAASV-GSLKLIELLCGLG 163

Query: 179 PQLAMARDGNGETALHVLARK 199
                 +D  G T L     +
Sbjct: 164 KSAVNWQDKQGWTPLFHALAE 184

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 5e-11
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 21/190 (11%)

Query: 21  PLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76
           PLH +      +          N+N +        +  T  HIA        V+ L +  
Sbjct: 39  PLHWSVSFQAHEITSFLLSKMENVNLDDYP---DDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 77  TPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALL 132
              DL      G T L  A      ++++ ++    +       I+      PL  AA +
Sbjct: 96  LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-----IKDKFNQIPLHRAASV 150

Query: 133 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 189
           G  ++I  L  +  +  +  +D+     L  A+ + G  D A+ L++ +       D  G
Sbjct: 151 GSLKLIELLCGL-GKSAVNWQDKQGWTPLFHALAE-GHGDAAVLLVEKYGAEYDLVDNKG 208

Query: 190 ETALHVLARK 199
             A  V   +
Sbjct: 209 AKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 87  VGNTALCFAAVSG-VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS-- 143
           + N  L  A +     K+ E++ +K       +   G  PL  +      E+  +L S  
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 144 --VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAM-ARDGNGETALHVLARK 199
             V  ++   +       +A    G  +V   L     +  +      G T LH+   K
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 24/130 (18%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRIS---------RNQDTALHIAAGARRTLFVQE 71
            LHLA  K              E     I          +     LH AA       ++ 
Sbjct: 110 CLHLAVGKK-----------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
           L  L     +  ++K G T L  A   G    A ++V K      +  NKGA    +A  
Sbjct: 159 LCGL-GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL- 216

Query: 132 LGHKEMIWYL 141
             ++++  + 
Sbjct: 217 --NEQVKKFF 224

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 19  YAPLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQD--TALHIAAGARRTLFVQEL-- 72
            A L  ++L+G++D  +       +P         N +  TALH A  A  T  V+ L  
Sbjct: 38  LALLLDSSLEGEFDLVQRIIYEVDDPSL------PNDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 73  ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGATPL 126
               VN          +  G T L  AA     ++ + +V         +    + A   
Sbjct: 92  FGVNVNA--------ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH-HPQLAMAR 185
           C     G+ +   +LY    +E +   ++  ++ A+ D    +     ++       + R
Sbjct: 144 CEEMEEGYTQCSQFLYG--VQEKMGIMNK-GVIYALWDYEPQNDDELPMKEGDCMTIIHR 200

Query: 186 DGNGETALHV 195
           +   E     
Sbjct: 201 EDEDEIEWWW 210

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 36/195 (18%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR--------NQDTALHIAAGARRTLFVQEL 72
            L                    +    RI+              L  ++       VQ +
Sbjct: 8   SLPPGKRTN-----------LRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRI 56

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 128
           +  +   D +L N  G TAL  A  +G T+I + +V    N N        + G TPL  
Sbjct: 57  IYEVD--DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-----ADSDGWTPLHC 109

Query: 129 AALLGHKEMIWYLYS----VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMA 184
           AA   + ++  +L      V        +   +    + + G    +  L     ++   
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE-GYTQCSQFLYGVQEKMG-I 167

Query: 185 RDGNGETALHVLARK 199
            +     AL     +
Sbjct: 168 MNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
            +L             E       V           N +    L  +++ G   + + ++
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVK---------FNPLPLALLLDSSLEGEFDLVQRII 57

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
            +  + PS+  ++G T L  A   GH E++ +L  
Sbjct: 58  YEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 88  GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-GATPLCMAALLGHKEMIWYLYSVTK 146
           G  +L     + + K     +        ++ N      L  ++L G  +++  +    +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMR---VKFNPLPLALLLDSSLEGEFDLVQRIIY--E 59

Query: 147 EEDLKEED---RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
            +D    +      L  AV   G  ++   L+Q    +  A D +G T LH  A  
Sbjct: 60  VDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASC 113

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 45/193 (23%)

Query: 21  PLHLAALKGDWDFARNFFNL----NPEAVCVRISRNQDTALHIAAGARRTLFVQEL---- 72
           P   AA K D         L    + +AV      N  TAL   AG      V+ L    
Sbjct: 48  PWWTAARKADEQALSQ---LLEDRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 73  --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 126
             ++             G TAL  AA     ++ E +V    +       +   +G T L
Sbjct: 101 ADLDHRDMRG-------GLTALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTAL 148

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 186
            +A  +           +     +  E  I +L            +       ++   + 
Sbjct: 149 ELAREILKTTPKGNP--MQFGRRIGLEKVINVLEG---------QVFEYAEVDEIV-EKR 196

Query: 187 GNGETALHVLARK 199
           G G+   +++  K
Sbjct: 197 GKGKDVEYLVRWK 209

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 25/158 (15%), Positives = 39/158 (24%), Gaps = 56/158 (35%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRIS----------RNQDTALHIAAGARRTLFVQ 70
            L   A  G           + + V +             R   TALH+AAG  R   V+
Sbjct: 80  ALLFVAGLG-----------SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 71  EL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS-------- 116
            L      + +         ++ G TAL  A     T      +   R +          
Sbjct: 129 ALVELGADIEV--------EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 117 -------------IRGNKGATPLCMAALLGHKEMIWYL 141
                         +  KG     +       +  W  
Sbjct: 181 GQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 61.3 bits (150), Expect = 5e-11
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 43/203 (21%)

Query: 19  YAPLHLAALKGDWDFARNFFNLNPEAVCVRIS-------RNQD--TALHIAAGARRTLFV 69
            A L  A  +              +   +           + +  T L+IA         
Sbjct: 7   GALLEAANQRD-----------TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 70  QEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGA 123
           + L      +NL        +N + ++   +A   G T+I   M+       +     G 
Sbjct: 56  KALIDRGADINL--------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG 107

Query: 124 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALD----LIQ 176
             L  AA  GH + +  L    +E D+  ++      L+ AV       +  D    L++
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGRE-DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 177 HHPQLAMARDGNGETALHVLARK 199
           +    +  +D +G TA+    +K
Sbjct: 167 NGADQS-IKDNSGRTAMDYANQK 188

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 83  LRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMI 138
           ++       L  A      K+ E++       +         +G TPL +A      E+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD-----EVDTEGNTPLNIAVHNNDIEIA 55

Query: 139 WYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
             L    +  D+  ++ I     L A    G  ++   +++H        +  G  AL  
Sbjct: 56  KALID--RGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNRYGGNALIP 112

Query: 196 LARK 199
            A K
Sbjct: 113 AAEK 116

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 30/139 (21%)

Query: 21  PLHLAALKGDWDFARNF-----FNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELV 73
           P   A  +G  +           +LN          N+    AL  AA       V+ L+
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLN--------KHNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 74  NLMTPEDLALRNKVGNTALCFAAVSGVTK-----IAEVMV----NKNRELPSIRGNKGAT 124
                ED+  +N  G TAL  A            I ++++    +++     I+ N G T
Sbjct: 127 E-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS-----IKDNSGRT 180

Query: 125 PLCMAALLGHKEMIWYLYS 143
            +  A   G+ E+   L  
Sbjct: 181 AMDYANQKGYTEISKILAQ 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 6e-11
 Identities = 35/166 (21%), Positives = 55/166 (33%), Gaps = 17/166 (10%)

Query: 49  ISRNQDTALHIAAGARRTLFVQELVNL-MTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
           ++ + DTALH+A   +   F+  L+      E L L+N +G TAL  AA+ G     E +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL--------------YSVTKEEDLKEE 153
                    +    G T L +A  +        L              Y    ++   + 
Sbjct: 65  YAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 154 DRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                 V        +          QL  A + +G T LHV    
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIH 168

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 19/193 (9%)

Query: 21  PLHLAALKGDWDFAR----NFFNLNPEAVCVRISRNQD-------TALHIAAGARRTLFV 69
            LHLA        A        +   +A    ++++QD           + +        
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 70  QELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129
           +          L   N  G+T L  A +    ++  ++ +   +L       G TPL +A
Sbjct: 141 EPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199

Query: 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARD 186
                  ++  L  +    D           L  A++      +A  L  H         
Sbjct: 200 VEAQAASVLELL--LKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEP-EDG 255

Query: 187 GNGETALHVLARK 199
           G+  +        
Sbjct: 256 GDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.0 bits (136), Expect = 7e-09
 Identities = 38/203 (18%), Positives = 56/203 (27%), Gaps = 39/203 (19%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRIS---------RNQDTALHIAAGARRTLFVQE 71
            LHLAA+ G               V    +         R   TALH+A   R       
Sbjct: 48  ALHLAAILG-----------EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 72  LV-----------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 120
           L+           +    +         +      +        E      R        
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE----LLVAVIDAGLYDVALDLIQ 176
            G TPL +A +    EM+  L       DL + +       L +AV +A    V   L++
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAV-EAQAASVLELLLK 213

Query: 177 HHPQLAMARDGNGETALHVLARK 199
                  AR   G T L     +
Sbjct: 214 AGADPT-ARMYGGRTPLGSALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 33/147 (22%)

Query: 10  GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRIS-------RNQD--TALHIA 60
             +    TS+AP  + +            N   E               N D  T LH+A
Sbjct: 116 SQDCTPDTSHAPAAVDSQP----------NPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165

Query: 61  AGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
              +    V+ L      +N             G T L  A  +    + E+++    + 
Sbjct: 166 VIHKDAEMVRLLRDAGADLN-------KPEPTCGRTPLHLAVEAQAASVLELLLKAGAD- 217

Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYL 141
           P+ R   G TPL  A L  +  +   L
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 36/146 (24%)

Query: 21  PLHLAALKGDWDFARNFF------NLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL-- 72
           PLH+A +  D +  R         +LN             T LH+A  A+    ++ L  
Sbjct: 161 PLHVAVIHKDAEMVR--LLRDAGADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 73  ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 128
                          R   G T L  A +     +A ++           G    +P   
Sbjct: 214 AGADPTA--------RMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSS 264

Query: 129 AALLGHKEMIWYLYSVTKEEDLKEED 154
           +      +          +E  + +D
Sbjct: 265 SGSDSDSDNR--------DEGDEYDD 282

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.7 bits (151), Expect = 8e-11
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 37/195 (18%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            LHLAA                +A    +  + D         T LH A  A      Q 
Sbjct: 60  ALHLAARYS-----------RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 127
           L+      DL  R   G T L  AA   V  + E ++    + N        + G + L 
Sbjct: 109 LIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALH 162

Query: 128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMA 184
            AA + + +    L       +   ++  E   L +A  + G Y+ A  L+ H       
Sbjct: 163 WAAAVNNVDAAVVLLK--NGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANR-DI 218

Query: 185 RDGNGETALHVLARK 199
            D        +   +
Sbjct: 219 TDHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.7 bits (151), Expect = 8e-11
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 33/200 (16%)

Query: 21  PLHLAALKGDWDFARNFF--NLNPEAVCVRIS----------RNQDTALHIAAGARRTLF 68
           PL +A+  G      N       P  +   I           R  +TALH+AA   R+  
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 69  VQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG 122
            + L       N+        ++ +G T L  A  +    + ++++         R + G
Sbjct: 73  AKRLLEASADANI--------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124

Query: 123 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHP 179
            TPL +AA L  + M+  L  +    D+   D +    L  A       D A+ L+++  
Sbjct: 125 TTPLILAARLAVEGMLEDL--INSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGA 181

Query: 180 QLAMARDGNGETALHVLARK 199
                ++   ET L + AR+
Sbjct: 182 NKD-MQNNREETPLFLAARE 200

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 39/140 (27%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
           PL LAA                  +   I+ + D         +ALH AA          
Sbjct: 127 PLILAARLA-----------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGA 123
           L       ++        +N    T L  AA  G  + A+V+++   NR+   I  +   
Sbjct: 176 LLKNGANKDM--------QNNREETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDR 224

Query: 124 TPLCMAALLGHKEMIWYLYS 143
            P  +A    H +++  L  
Sbjct: 225 LPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 28/151 (18%)

Query: 52  NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN 111
           +  T L IA+                       +  G              +    + + 
Sbjct: 9   DGFTPLMIAS----------------------CSGGGLETGNSEEEEDAPAVISDFIYQG 46

Query: 112 RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLY 168
             L +     G T L +AA     +    L       D   +D +    L  AV  A   
Sbjct: 47  ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAV-SADAQ 103

Query: 169 DVALDLIQHHPQLAMARDGNGETALHVLARK 199
            V   LI++      AR  +G T L + AR 
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLILAARL 134

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 39/175 (22%)

Query: 54  DTALHIAAGARRTLFVQEL-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEV 106
           ++ L +AA       + +L       V+         R  +G TAL  AA+    + A V
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQ--------RGAMGETALHIAALYDNLEAAMV 55

Query: 107 MV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV-----TKEEDLKEEDRIE 157
           ++        E  +    +G T L +A +  +  ++  L +       +        R  
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 158 ---------LLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLARKPS 201
                    L  A    G  ++   LI+H    A   A+D  G T LH+L  +P+
Sbjct: 116 NLIYYGEHPLSFAACV-GSEEIVRLLIEHG---ADIRAQDSLGNTVLHILILQPN 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 34/211 (16%), Positives = 55/211 (26%), Gaps = 75/211 (35%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRIS--------------RNQDTALHIAAGARRT 66
            LH+AAL             N EA  V +                   TALHIA   +  
Sbjct: 40  ALHIAALYD-----------NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88

Query: 67  LFVQELV-----------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKN 111
             V+ L+             +           G   L FAA  G  +I  +++    +  
Sbjct: 89  NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148

Query: 112 RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV---AVIDAGLY 168
                 + + G T L +  L  +K     +                LL+           
Sbjct: 149 -----AQDSLGNTVLHILILQPNKTFACQM--------------YNLLLSYDGGDHLK-- 187

Query: 169 DVALDLIQHHPQLAMARDGNGETALHVLARK 199
                       L +  +  G T   +   +
Sbjct: 188 -----------SLELVPNNQGLTPFKLAGVE 207

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 34/149 (22%)

Query: 21  PLHLAALKGDWDFAR---------NFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFV 69
            LH+A +  + +  R         +             +        L  AA       V
Sbjct: 78  ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137

Query: 70  QEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV--------NKN-REL 114
           + L      +          ++ +GNT L    +      A  M           + + L
Sbjct: 138 RLLIEHGADIRA--------QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYS 143
             +  N+G TP  +A + G+  M  +L  
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 41/199 (20%), Positives = 60/199 (30%), Gaps = 32/199 (16%)

Query: 11  VERNCFTSYAPLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQD--TALHIAAGARRT 66
             R        L  AAL G+ +  +       +P         N++  TALH A      
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ------PNEEGITALHNAICGANY 67

Query: 67  LFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 120
             V  L      VN          +  G T L  AA    T I   +V     + +   +
Sbjct: 68  SIVDFLITAGANVNS--------PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 121 KGATPL--CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA--GLYDVALDLIQ 176
            GAT    C     G+ +   YL     E+ +   +    + A+ D      D       
Sbjct: 120 DGATAFEKCDPYREGYADCATYLAD--VEQSMGLMNS-GAVYALWDYSAEFGDELSFREG 176

Query: 177 HHPQLAMARDGNGETALHV 195
                 + RDG  ET    
Sbjct: 177 ESVT-VLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 25/132 (18%), Positives = 34/132 (25%), Gaps = 23/132 (17%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRT--LFVQELVNLM 76
           PLH AA   D               A       +  TA       R         L ++ 
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATT---LSDGATAFEKCDPYREGYADCATYLADVE 146

Query: 77  TPEDLALRNKVGNTALCFAAVSGVTKIAEVM------VNKNRELPSIRGNKGATPLCMAA 130
             + + L N     AL   +        E+       V   R     R     T    AA
Sbjct: 147 --QSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTVLR-----RDGPEETDWWWAA 196

Query: 131 LLGHKEMIWYLY 142
           L G +  +   Y
Sbjct: 197 LHGQEGYVPRNY 208

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.1 bits (147), Expect = 2e-10
 Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 37/195 (18%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            LHLAA                +A    +  + D         T LH A  A      Q 
Sbjct: 28  ALHLAARYS-----------RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 127
           L+      DL  R   G T L  AA   V  + E ++    + N        + G + L 
Sbjct: 77  LIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALH 130

Query: 128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMA 184
            AA + + +    L       +   ++  E   L +A  + G Y+ A  L+ H       
Sbjct: 131 WAAAVNNVDAAVVLLK--NGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANR-DI 186

Query: 185 RDGNGETALHVLARK 199
            D        +   +
Sbjct: 187 TDHMDRLPRDIAQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.3 bits (137), Expect = 3e-09
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           TALH+AA   R+   + L       N+        ++ +G T L  A  +    + ++++
Sbjct: 27  TALHLAARYSRSDAAKRLLEASADANI--------QDNMGRTPLHAAVSADAQGVFQILI 78

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDA 165
                    R + G TPL +AA L  + M+  L +     D+   D +    L  A    
Sbjct: 79  RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--SHADVNAVDDLGKSALHWAAAV- 135

Query: 166 GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
              D A+ L+++       ++   ET L + AR+
Sbjct: 136 NNVDAAVVLLKNGANKD-MQNNREETPLFLAARE 168

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
            ++ G TAL  AA    +  A+ ++    + N     I+ N G TPL  A     + +  
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQ 75

Query: 140 YLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 196
            L    +  DL          L++A     +  +  DLI  H  +  A D  G++ALH  
Sbjct: 76  ILIRN-RATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVN-AVDDLGKSALHWA 132

Query: 197 ARK 199
           A  
Sbjct: 133 AAV 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 49.7 bits (120), Expect = 5e-07
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 43/142 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
           PL LAA                  +   I+ + D         +ALH AA          
Sbjct: 95  PLILAARLA-----------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L       ++        +N    T L  AA  G  + A+V++    N++     I  + 
Sbjct: 144 LLKNGANKDM--------QNNREETPLFLAAREGSYETAKVLLDHFANRD-----ITDHM 190

Query: 122 GATPLCMAALLGHKEMIWYLYS 143
              P  +A    H +++  L  
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 103 IAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LL 159
           +    + +   L +     G T L +AA     +    L       D   +D +    L 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLH 63

Query: 160 VAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
            AV  A    V   LI++      AR  +G T L + AR 
Sbjct: 64  AAVS-ADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.9 bits (149), Expect = 2e-10
 Identities = 44/209 (21%), Positives = 68/209 (32%), Gaps = 51/209 (24%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
           PLH A                 + V + +    D         T   +AA A     ++ 
Sbjct: 42  PLHNAVQMS-----------REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV---------NKNRELPS 116
                  VN          +  G TA   AAV G  K  + +           K +E   
Sbjct: 91  FLSKGADVNE--------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142

Query: 117 IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVI---DAGLYDV 170
                GAT L  AA  GH E++  L       D+   D +    L+ A++   D+ +  +
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLD-EMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 171 ALDLIQHHPQLAMARDGNGETALHVLARK 199
              L+ H   +   R   G+T L +   K
Sbjct: 202 THLLLDHGADV-NVRGERGKTPLILAVEK 229

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 40/202 (19%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
            L  A    D D  +       N      +      T LH A    R   V+ L      
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNF---QEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 128
                     LR K G T    AA++G  K+ ++ +    + N          G T    
Sbjct: 65  PV--------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFME 111

Query: 129 AALLGHKEMIWYLYSV-----TKEEDLKEEDRIE------LLVAVIDAGLYDVALDLIQH 177
           AA+ G  + + +LY        + +  ++++R+       L+ A    G  +V   L+  
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDE 170

Query: 178 HPQLAMARDGNGETALHVLARK 199
                 A D  G  AL      
Sbjct: 171 MGADVNACDNMGRNALIHALLS 192

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.2 bits (129), Expect = 6e-08
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 20/194 (10%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
           P  LAA+ G     + F +   +             TA   AA   +   ++ L      
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADVNEC----DFYGFTAFMEAAVYGKVKALKFLYKRGAN 130

Query: 73  VNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130
           VNL   T ED     K G TAL  AA  G  ++ ++++++     +   N G   L  A 
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190

Query: 131 LLGH----KEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMAR 185
           L       + +   L     + +++ E  +  L++AV       +   L++         
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEINDT 249

Query: 186 DGNGETALHVLARK 199
           D +G+TAL +    
Sbjct: 250 DSDGKTALLLAVEL 263

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 9e-08
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 23/133 (17%)

Query: 21  PLHLAALKGDWDFAR---NFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMT 77
            L  AA KG  +  +   +    +  A           AL  A  +     V+ + +L  
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHL-- 204

Query: 78  PEDLAL---------RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 128
                L         R + G T L  A       + + ++ +     +   + G T L +
Sbjct: 205 -----LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

Query: 129 AALLGHKEMIWYL 141
           A  L  K++   L
Sbjct: 260 AVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 37/168 (22%)

Query: 54  DTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
           +  L  A        VQ+L      VN           + G T L  A       I E++
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-------EEGGWTPLHNAVQMSREDIVELL 58

Query: 108 V----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLV 160
           +    +       +R   GATP  +AA+ G  +++     ++K  D+ E D       + 
Sbjct: 59  LRHGADPV-----LRKKNGATPFLLAAIAGSVKLLKLF--LSKGADVNECDFYGFTAFME 111

Query: 161 AVIDAGLYDVALDLIQH---------HPQLAMARDGNGETALHVLARK 199
           A +  G       L +            +        G TAL   A K
Sbjct: 112 AAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 7/118 (5%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
               N  L  A  +    + + ++     +       G TPL  A  +  ++++  L   
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 145 TKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
               D     +      L+A I  G   +    +     +    D  G TA    A  
Sbjct: 61  -HGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVY 115

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 21  PLHLAALKGDWDFAR-----NFFNLNPEAVCVRISRNQDTALHIAA--GARRTLFVQEL- 72
            LH AA   D+              + E     + RN  TAL I A    R  +   +L 
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEE----LDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 73  ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV-----NKNRELPSIRGNK 121
                 V+             G TAL +AA      I + +V     NK+      +   
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----KQDED 312

Query: 122 GATPLCMAALLGHKEMIWYLYS 143
           G TP+ +AA  G  E++ YL  
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQ 334

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 41/208 (19%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            LH  A     + + +   L        I+   D         T L +A  ARR   V  
Sbjct: 128 VLHWIASNSSAEKSED---LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI--RGNKGA 123
           L        +         NK   +AL  AA +    +   M+N  +    I      G 
Sbjct: 185 LMKAGADPTI--------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 124 TPLCMAALLGHKEMIW---YLYS------VTKEEDLKEEDRIE---LLVAVIDAGLYDVA 171
           T L + A    ++ +     L                 E       L  A        + 
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV-SNMPIV 295

Query: 172 LDLIQHHPQLAMARDGNGETALHVLARK 199
             L+         +D +G+T + + A++
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQE 323

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 32/202 (15%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
            LH  A  G +         +     +   R+  T LH  A        ++L+     E 
Sbjct: 97  KLHTEA-AGSYAITEPITRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 81  LAL------RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAA 130
           +A        +   NT L  A ++   ++   ++    +       I      + L  AA
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-----IYNKSERSALHQAA 207

Query: 131 LLGHKEMIWYLYSVTKEE-DLKEEDRIE---LLVAVIDAGLYDVALD--LIQH------- 177
                 M+ Y+ + TK + D++E DR     L++   + G   VA    L++        
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 178 HPQLAMARDGNGETALHVLARK 199
                 +    G TALH  A+ 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQV 289

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 30/188 (15%), Positives = 48/188 (25%), Gaps = 27/188 (14%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
            L  A+  G     RN            +            G                + 
Sbjct: 40  SLLEASYDGYIKRQRNE-----------LQHYSLYPNPQGYGNGNDFLGDFNHT--NLQI 86

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
                      L   A +G   I E +  ++  +  I      T L   A     E    
Sbjct: 87  PTEPEPESPIKLHTEA-AGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSED 143

Query: 141 LYSVTKEE------DLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGET 191
           L     +E      D+   D  E   L++AV  A    +   L++         + +  +
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADPT-IYNKSERS 201

Query: 192 ALHVLARK 199
           ALH  A  
Sbjct: 202 ALHQAAAN 209

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 19/134 (14%)

Query: 21  PLHLAALKGDWDFARNFF-------NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQE 71
            L + A     D   +          ++ +    + S      TALH AA       V+ 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 127
           LV      +   +++ G T +  AA  G  ++   ++    +              T   
Sbjct: 298 LVG-EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-----AVDATDHTARQ 351

Query: 128 MAALLGHKEMIWYL 141
           +A    H  ++   
Sbjct: 352 LAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 15/113 (13%)

Query: 88  GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
              +L  A+  G  K     +                P       G+  +  + ++  + 
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHY----------SLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 148 EDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
               E +  I+L      AG Y +   + +    +      +  T LH +A  
Sbjct: 87  PTEPEPESPIKLHTEA--AGSYAITEPITRESVNI--IDPRHNRTVLHWIASN 135

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 28/149 (18%)

Query: 21  PLHLAALKGDWDF------------ARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLF 68
            LH+A  + +               A    +   +          +  L +AA   +   
Sbjct: 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 69  VQELV-NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM---------------VNKNR 112
           V+ L+ N   P D++ R+ VGNT L          +                   ++   
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 113 ELPSIRGNKGATPLCMAALLGHKEMIWYL 141
           +L  I   KG TPL +AA  G   ++ Y+
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 33/205 (16%), Positives = 54/205 (26%), Gaps = 44/205 (21%)

Query: 21  PLHLAAL---KGDWDFAR---------NFFNLNPEAVCVRISRNQDTALHIAAGARRTLF 68
            L  A L    G  D            +       A          TALHIA   R    
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 69  VQELV------------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL-- 114
           V  LV            +             G   L  AA +    I + ++  + +   
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 174
            S R + G T L     +    +                D  + + ++ +  +  +   L
Sbjct: 177 ISARDSVGNTVLHALVEVADNTV----------------DNTKFVTSMYN-EILILGAKL 219

Query: 175 IQHHPQLAMARDGNGETALHVLARK 199
                +L    +  G T L + A  
Sbjct: 220 H-PTLKLEEITNRKGLTPLALAASS 243

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 23/130 (17%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRIS-RNQDTALHIAA-----GARRTLFVQELVN 74
           PL LAA        +     + +   +       +T LH            T FV  + N
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 75  L---------MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
                      T +   + N+ G T L  AA SG   +   ++ +               
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPEC 262

Query: 126 LCMAALLGHK 135
              AA   H 
Sbjct: 263 RHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 34/202 (16%), Positives = 55/202 (27%), Gaps = 46/202 (22%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEA----VCVRISRNQD--TALHIAAGARRTLFVQELVN 74
            +  A  + +     +       +            +   T L  A              
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM------------- 62

Query: 75  LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH 134
                 L L N   +T      V+  T   +  VN +    +    KG T L +A    +
Sbjct: 63  ------LNLHNGQNDTIALLLDVARKTDSLKQFVNAS---YTDSYYKGQTALHIAIERRN 113

Query: 135 KEMIWYL---------------YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 179
             ++  L               +  TK         + L +A        +   L+Q+  
Sbjct: 114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQNSW 172

Query: 180 QLAM--ARDGNGETALHVLARK 199
           Q A   ARD  G T LH L   
Sbjct: 173 QPADISARDSVGNTVLHALVEV 194

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
            +  A   G ++  R       +         +   T LH AA   R   V+        
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQP----DKENVTLLHWAAINNRIDLVKYYISKGAI 67

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132
           V+        L   + +T L +A   G   +   ++    + PS+   +G + + +AA  
Sbjct: 68  VD-------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQF 119

Query: 133 GHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNG 189
           GH  ++ YL +  K +D+   D+     L+ A       D    L+  +  + +    + 
Sbjct: 120 GHTSIVAYLIA--KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177

Query: 190 ETALHVLARK 199
            TALH     
Sbjct: 178 NTALHWAVLA 187

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
             +  A         +EL      V           +K   T L +AA++    + +  +
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQ--------PDKENVTLLHWAAINNRIDLVKYYI 62

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDA 165
           +K   +  + G+  +TPL  A   GH  M+  L       D    D      + +A    
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--YGADPSLIDGEGCSCIHLAAQF- 119

Query: 166 GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           G   +   LI     +    D NG T L   A +
Sbjct: 120 GHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 42/195 (21%), Positives = 72/195 (36%), Gaps = 35/195 (17%)

Query: 21  PLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQD---TALHIAAGARRTLFVQELV 73
            LH AA+    D  + +      ++            D   T LH A        V +L+
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVD--------QLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 74  NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMA 129
                 D +L +  G + +  AA  G T I   ++    + +     +    G TPL  A
Sbjct: 97  KYGA--DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-----MMDQNGMTPLMWA 149

Query: 130 ALLGH-KEMIWYLYSVTKEEDLKEEDRIE----LLVAVIDAGLYDVALDLIQHHPQLAMA 184
           A   H  +    L  +T    +   D+      L  AV+ AG   V   L++    +  A
Sbjct: 150 AYRTHSVDPTRLL--LTFNVSVNLGDKYHKNTALHWAVL-AGNTTVISLLLEAGANVD-A 205

Query: 185 RDGNGETALHVLARK 199
           ++  GE+AL +  ++
Sbjct: 206 QNIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 43/141 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            +HLAA  G           +   V   I++ QD         T L  AA    ++    
Sbjct: 112 CIHLAAQFG-----------HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

Query: 72  L-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGN 120
           L       VN              NTAL +A ++G T +  +++    N +      +  
Sbjct: 161 LLLTFNVSVN-------LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-----AQNI 208

Query: 121 KGATPLCMAALLGHKEMIWYL 141
           KG + L +A    +  MI +L
Sbjct: 209 KGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 13/122 (10%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
            +      +  A   G+ +    +V    +           +  T L  AA+    +++ 
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAAINNRIDLVK 59

Query: 140 YLYSV--TKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 197
           Y  S     ++   + +   L  A    G   + + L+++        DG G + +H+ A
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADP-SLIDGEGCSCIHLAA 117

Query: 198 RK 199
           + 
Sbjct: 118 QF 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 72/477 (15%), Positives = 151/477 (31%), Gaps = 130/477 (27%)

Query: 43  EAVCVRISRNQDTALHIAAGARRTL--FVQELVNLMTPED-----LALRNKVGNTALCFA 95
           + +  +I  N  +    ++  +  +     EL  L+  +      L L N V N      
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNA----- 256

Query: 96  AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR 155
                 K         + L + R  K  T    AA   H  +  +  ++T +E       
Sbjct: 257 ------KAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVK----- 304

Query: 156 IELLVAVIDAGLYDVALDLIQHHPQL-----AMARDGNGETALHVLARKPSAFASGSQLG 210
             LL+  +D    D+  +++  +P+         RDG                   +   
Sbjct: 305 -SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL------------------ATWD 345

Query: 211 FWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLL---FT 267
            W+    +   +  I++  L  L+  E  K      +    + I      P+ LL   + 
Sbjct: 346 NWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------PTILLSLIWF 397

Query: 268 AVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI-FNLIYELGAHKDLIAS 326
            V   +V  ++  +  Y +L+ K      S   I  ++ + K+     Y L  H+ ++  
Sbjct: 398 DVIKSDVMVVVNKLHKY-SLVEK--QPKESTISIPSIYLELKVKLENEYAL--HRSIVDH 452

Query: 327 Y----KDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSY--REAK 380
           Y      ++++        L PP    +D           +++  I       +  +  +
Sbjct: 453 YNIPKTFDSDD--------LIPP---YLDQ----------YFYSHI------GHHLKNIE 485

Query: 381 NSEGRTPHILFSEEHRRLVREGEKWMKDTASSCMVVATLIATVMFAAAFTVPGGNDDSTG 440
           + E  T   LF            ++++           +      + A+   G   ++  
Sbjct: 486 HPERMT---LFRMVFLDF-----RFLE---------QKIRHD---STAWNASGSILNTLQ 525

Query: 441 RPIFLHYKSFMVFAVSDALALFCSATSILMFLSIITSRYAEEDFVHSLPNRLIIGLA 497
           +     YK ++         L     +IL FL        EE+ + S     ++ +A
Sbjct: 526 Q--LKFYKPYICDNDPKYERLVN---AILDFL-----PKIEENLICS-KYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 7e-08
 Identities = 67/399 (16%), Positives = 127/399 (31%), Gaps = 100/399 (25%)

Query: 244 EQVLLLDDSKIGELLRKPSRLLFTAVELG---NVEFLMVLIQMY---PNLIWKVDDHSRS 297
              L L       LL K   ++   VE     N +FLM  I+     P+++ ++    R 
Sbjct: 62  SGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 298 MFHIAV-------VHRQEKIFNL---IYEL------------GAHK-----DLIASYK-- 328
             +          V R +    L   + EL            G+ K     D+  SYK  
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 329 DENNNNM--LHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRT 386
            + +  +  L+L    +P   L++     L  + + +W    +       R   + +   
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLR-IHSIQAEL 234

Query: 387 PHILFSEEHRR-L-----VREGEKWMKDTASSCMVVAT----LIATVMFAAAFTVPGGND 436
             +L S+ +   L     V+  + W      SC ++ T     +   + AA  T    + 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 437 DSTGRPIFLHYKSFMVFAVSDALALFCSATSI--------LMFLSIITSRYAE-----ED 483
            S         +   +        L C    +           LSII     +     ++
Sbjct: 294 HSMT---LTPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 484 FVHSLPNRL--IIGLATLFISIATMMAAFAATLFIVLGDDFVWIAIPIATGACVPVSLFA 541
           + H   ++L  II  +   +  A     F      V       I          P  L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVFPPS-AHI----------PTILLS 393

Query: 542 LLQFPLLS----DMISHLYKYSIFTRRSN------HLLY 570
           L+ F ++      +++ L+KYS+  ++          +Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.2 bits (142), Expect = 6e-10
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

Query: 49  ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           + +N +    I         +  L N         R+    T L  A + G+    + +V
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNY--------RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVA 161
                        +  +G+T L  A       +   L S  K  ++  +D      L+ +
Sbjct: 56  ENFDKLE-----DKDIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDFSGKTPLMWS 108

Query: 162 VIDAGLYDVALDLIQHHPQLAM--ARDGNGETALHVLARK 199
           +I  G  +++  L++H    A    R+  GET L V ++ 
Sbjct: 109 IIF-GYSEMSYFLLEHG---ANVNDRNLEGETPLIVASKY 144

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 43/145 (29%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
            L  A                       +S+         +  T L  +     +     
Sbjct: 71  ALIWAVKNN-----------RLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L      VN         RN  G T L  A+  G ++I + ++    + +      R   
Sbjct: 120 LLEHGANVND--------RNLEGETPLIVASKYGRSEIVKKLLELGADIS-----ARDLT 166

Query: 122 GATPLCMAALLGHKEMIWYLYSVTK 146
           G T    A + G +E+I     V +
Sbjct: 167 GLTAEASARIFGRQEVIKIFTEVRR 191

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 38/226 (16%), Positives = 62/226 (27%), Gaps = 74/226 (32%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--------TALHIAAGARRTLFVQEL 72
              L    G           +   +   + + +              A  +  T  V  L
Sbjct: 11  NEQLKRWIG-----------SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 73  ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKG 122
                 +N          N  G TAL  A +     + + +V    N N+       N+G
Sbjct: 60  LERGADINY--------ANVDGLTALHQACIDDNVDMVKFLVENGANINQ-----PDNEG 106

Query: 123 ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-----------------IELLVAVIDA 165
             PL  AA  G+ ++  YL  +++   +   +                  ++  V     
Sbjct: 107 WIPLHAAASCGYLDIAEYL--ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164

Query: 166 ------------GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                        L D    L   H         +G TALHV A K
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVAAAK 209

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 38/192 (19%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR-------NQD--TALHIAAGARRTLFVQE 71
           PLH AA  G             +     IS+       N +  T L IA        +Q 
Sbjct: 109 PLHAAASCG-----------YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 72  LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLC 127
            VN         +      A        +    + +     N  R         G T L 
Sbjct: 158 EVNR--------QGVDIEAARKEEERIMLRDARQWLNSGHINDVR-----HAKSGGTALH 204

Query: 128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDG 187
           +AA  G+ E++  L     + ++K+ D    L A    G  +    L+++   +  A + 
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNK 263

Query: 188 NGETALHVLARK 199
            G+TA  V    
Sbjct: 264 VGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 48/170 (28%)

Query: 21  PLHLAALKG--------------DWDFARNF--FNLNPEAVCVRISRNQD---------T 55
           PL +A  +               D + AR      +  +A     S + +         T
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201

Query: 56  ALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV- 108
           ALH+AA    T  ++ L      VN+        ++  G T L  AA  G  +   ++V 
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNI--------KDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 109 ---NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR 155
              +            G T   +A       +             K E +
Sbjct: 254 NLCDME-----AVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 117 IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 176
           +   K      +   +G +  +       K+  +K +D    L A    G  +  L L++
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS-GDTEEVLRLLE 61

Query: 177 HHPQLAMARDGNGETALHVLARK 199
               +    + +G TALH     
Sbjct: 62  RGADIN-YANVDGLTALHQACID 83

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRI-SRNQDTALHIAAGARRTLFVQELVNLMTPE 79
           PL LAA    WD          +   +       +T LH                     
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV------------------ 180

Query: 80  DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
            +   N   N+AL      G+ ++   +     +L  I  ++G TPL +AA  G  E+  
Sbjct: 181 -MIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238

Query: 140 YL 141
           ++
Sbjct: 239 HI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 34/232 (14%), Positives = 61/232 (26%), Gaps = 58/232 (25%)

Query: 21  PLHLAALKGDWDFARN----FFNLNPEAVCVRISRNQD--TALHIAA------------- 61
            L     +G  +            +        +      T L  A              
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 62  ---GARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-------- 110
                + +   + LVN             G++AL  A      +  +++V          
Sbjct: 65  LLQIDKDSGNPKPLVN----AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 111 ----NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE-DLKEEDR---IELLVAV 162
                ++        G  PL +AA     +++ YL     +   L+  D      L   V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 163 IDA---------------GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           + A               GL  +   L     QL    +  G T L + A++
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKE 231

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 35/138 (25%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
            L +  L             NPE     + R              +H AA A     +Q 
Sbjct: 41  ALQVMKLG------------NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
           L      VN+         +  GN  L  AA  G  ++ E +V         R +KG T 
Sbjct: 89  LLEFQADVNI--------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

Query: 126 LCMAALLGHKEMIWYLYS 143
             +A L G  E++  + +
Sbjct: 141 CDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.6 bits (125), Expect = 5e-08
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 30/158 (18%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
             L  AA       +  L      VN         +N  G TAL      G  +IA  ++
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVN--------AQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED---RIELLVA 161
               N +     ++   G   +  AA  G  + +  L     + D+  ED    + L +A
Sbjct: 58  LRGANPD-----LKDRTGFAVIHDAARAGFLDTLQTLLE--FQADVNIEDNEGNLPLHLA 110

Query: 162 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
             + G   V   L++H       R+  G+TA  +    
Sbjct: 111 AKE-GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 4e-04
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 88  GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
               L  AA  G  +    ++    N N      +   G T L +   LG+ E+   L  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVN-----AQNGFGRTALQVMK-LGNPEIARRLLL 58

Query: 144 VTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                DLK+      +  A    G  D    L++    +    D  G   LH+ A++
Sbjct: 59  RGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKE 113

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.9 bits (131), Expect = 1e-08
 Identities = 35/131 (26%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------VN 74
            L  AA  GD +  +    +     C  I   Q T LH AAG  R   V+ L      V+
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 75  LMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAA 130
                    ++K G   L  A   G  ++AE++V      N     +      TPL  AA
Sbjct: 70  A--------KDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-----VADLWKFTPLHEAA 116

Query: 131 LLGHKEMIWYL 141
             G  E+   L
Sbjct: 117 AKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 82  ALRNKVGNTALCFAAVSGVTKIAEVM-----VNKNRELPSIRGNKGATPLCMAALLGHKE 136
           A+ N   +  L  AA +G  +  + +     VN           + +TPL  AA      
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-----IEGRQSTPLHFAAGYNRVS 56

Query: 137 MIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAM--ARDGNGET 191
           ++ YL       D+  +D+     L  A    G Y+VA  L++H    A+    D    T
Sbjct: 57  VVEYLLQ--HGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHG---AVVNVADLWKFT 110

Query: 192 ALHVLARK 199
            LH  A K
Sbjct: 111 PLHEAAAK 118

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.9 bits (118), Expect = 5e-07
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 54  DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----N 109
           D  L  AA A     V++L  + +  +        +T L FAA      + E ++    +
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 110 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAG 166
            +      +   G  PL  A   GH E+   L        +   D  +   L  A    G
Sbjct: 68  VHA-----KDKGGLVPLHNACSYGHYEVAELLVK--HGAVVNVADLWKFTPLHEAAAK-G 119

Query: 167 LYDVALDLIQH--HPQLAMARDGNGETALHV 195
            Y++   L+QH   P     ++ +G T L +
Sbjct: 120 KYEICKLLLQHGADP---TKKNRDGNTPLDL 147

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.9 bits (131), Expect = 1e-08
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 35/138 (25%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
           PL  AA  G               V   +            +++AL +A     T  V+ 
Sbjct: 39  PLMWAAAHG-----------QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
           L      VN          +  G T L +A      K  ++++    + P+I  + G   
Sbjct: 88  LLDCGVDVNE--------YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNS 138

Query: 126 LCMAALLGHKEMIWYLYS 143
           + +A  LG++ +   + S
Sbjct: 139 MDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 43/140 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            +H  A +G               +  RI +            T L  AA   +   V+ 
Sbjct: 6   SVHQLAAQG-----------EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L        L          K   +AL  A   G T I ++++    + N          
Sbjct: 55  LLQNGADPQL--------LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-----EYDWN 101

Query: 122 GATPLCMAALLGHKEMIWYL 141
           G TPL  A    H + +  L
Sbjct: 102 GGTPLLYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
            ++H  A     L++         +N          ++ G T L +AA  G   + E ++
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVIN--------HTDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDA 165
               + P + G    + L +A   G+ +++  L  +    D+ E D      LL AV   
Sbjct: 57  QNGAD-PQLLGKGRESALSLACSKGYTDIVKML--LDCGVDVNEYDWNGGTPLLYAVHG- 112

Query: 166 GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                   L++           +G  ++ +    
Sbjct: 113 NHVKCVKMLLESGADP-TIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.8 bits (110), Expect = 5e-06
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 88  GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
            + ++   A  G        +      N         +G TPL  AA  G   ++ +L  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVIN-----HTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 144 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                D +   +     L +A    G  D+   L+     +    D NG T L      
Sbjct: 58  --NGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHG 112

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 28/149 (18%)

Query: 21  PLHLAALKGDWDF------------ARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLF 68
            LH+A  +    +            A+                  +  L +AA   +   
Sbjct: 96  ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155

Query: 69  VQELV-NLMTPEDLALRNKVGNTALCFAAVSG---------VTKIAEVM------VNKNR 112
           V  L  N     DL  ++  GNT L                VTK+ +++      +  + 
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215

Query: 113 ELPSIRGNKGATPLCMAALLGHKEMIWYL 141
            L ++  N G +PL MAA  G   +  ++
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 35/205 (17%), Positives = 57/205 (27%), Gaps = 44/205 (21%)

Query: 21  PLHLAALKGDW----------DFARNFFNLNPE--AVCVRISRNQDTALHIAAGARRTLF 68
            L  A L              D A    N+     +    +     TALHIA   R   +
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 69  VQELV------------NLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL-- 114
           V+ LV                P+D       G   L  AA +    I   +     +   
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 174
              + ++G T L     +            T+E         +LL+    A         
Sbjct: 169 LRRQDSRGNTVLHALVAIADN---------TRENTKFVTKMYDLLLIK-CAK-------- 210

Query: 175 IQHHPQLAMARDGNGETALHVLARK 199
           +     L    + +G + L + A+ 
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKT 235

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 33/145 (22%)

Query: 84  RNKVGNTALCFAAV---SGVTKIAEVMVNKNRELPSI----------RGNKGATPLCMAA 130
               G T L  A +   +G      ++++   +  ++             +G T L +A 
Sbjct: 42  EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI 101

Query: 131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY----------------DVALDL 174
               K  +  L  V K  D+  + R        + G +                 +   L
Sbjct: 102 ERRCKHYVELL--VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 175 IQHHPQLAM--ARDGNGETALHVLA 197
            ++  + A    +D  G T LH L 
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALV 184

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ-DTALHIAAGAR-----RTLFVQELVN 74
           PL LAA                +   +R   ++ +T LH            T FV ++ +
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 75  LM---------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK 110
           L+              AL N  G + L  AA +G   I + ++ +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 55  TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NK 110
             +         + V+  ++  T  DL   +  G + L +A   G + + E+++      
Sbjct: 7   DDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65

Query: 111 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGL 167
           N     +      TPL +AA  GH++++  L  +  + D+   +      L  A    G 
Sbjct: 66  N-----VMNRGDDTPLHLAASHGHRDIVQKL--LQYKADINAVNEHGNVPLHYACFW-GQ 117

Query: 168 YDVALDLIQHHPQLAMARDGNGETALHVLARK 199
             VA DL+ +   +    +  GE  +      
Sbjct: 118 DQVAEDLVANGALV-SICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 35/136 (25%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
           PLH A  +G               V + I R           DT LH+AA       VQ+
Sbjct: 42  PLHWACREG-----------RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
           L      +N          N+ GN  L +A   G  ++AE +V       SI    G  P
Sbjct: 91  LLQYKADINA--------VNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMP 141

Query: 126 LCMAALLGHKEMIWYL 141
           +  A     + +    
Sbjct: 142 VDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 88  GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
               +      G      + ++      +   + G +PL  A   G   ++  L  + + 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML--IMRG 62

Query: 148 EDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
             +   +R +   L +A    G  D+   L+Q+   +  A + +G   LH     
Sbjct: 63  ARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFW 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 43/140 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            LH+A++KG           +  +V   +    D         T LH A        V+ 
Sbjct: 13  LLHIASIKG-----------DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L      VN              ++ L  AA +G   I ++++    ++N          
Sbjct: 62  LLQHKALVNT--------TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-----AVNIF 108

Query: 122 GATPLCMAALLGHKEMIWYL 141
           G  P+        K ++   
Sbjct: 109 GLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.9 bits (123), Expect = 6e-08
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 23/97 (23%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           T LHIA+       V+ L       N+        ++  G T L  A   G  K+ E+++
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNV--------KDHAGWTPLHEACNHGHLKVVELLL 63

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
                 N       G +  +PL  AA  GH +++  L
Sbjct: 64  QHKALVN-----TTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 16/123 (13%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
            N  G T L  A++ G     E ++    + N     ++ + G TPL  A   GH +++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKVVE 60

Query: 140 YLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 196
            L  +  +  +          L  A  + G  D+   L+ +      A +  G   +   
Sbjct: 61  LL--LQHKALVNTTGYQNDSPLHDAAKN-GHVDIVKLLLSYGASR-NAVNIFGLRPVDYT 116

Query: 197 ARK 199
             +
Sbjct: 117 DDE 119

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 37/154 (24%)

Query: 21  PLHLAALKGDWDFARNFF---NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL--- 72
           P   AA K D           +++        + +++  TAL   AG      V+ L   
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVD--------AVDENGRTALLFVAGLGSDKCVRLLAEA 98

Query: 73  ---VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATP 125
              ++             G TAL  AA     ++ E +V    +       +   +G T 
Sbjct: 99  GADLDHRDMRG-------GLTALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTA 146

Query: 126 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELL 159
           L +A  +           +     +  E  I +L
Sbjct: 147 LELAREILKTTPKGNP--MQFGRRIGLEKVINVL 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 31/192 (16%), Positives = 48/192 (25%), Gaps = 68/192 (35%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQ--------DTALHIAAGARRTLFVQEL 72
              +    G              +     S           +T    AA       + +L
Sbjct: 17  EYLIEWKDG-------------HSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQL 63

Query: 73  -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC 127
                V+          ++ G TAL F A  G  K   ++     +L       G T L 
Sbjct: 64  LEDRDVDA--------VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115

Query: 128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDG 187
           MAA     E++  L                     ++ G  D+               D 
Sbjct: 116 MAAGYVRPEVVEAL---------------------VELGA-DIE------------VEDE 141

Query: 188 NGETALHVLARK 199
            G TAL +    
Sbjct: 142 RGLTALELAREI 153

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 16/117 (13%), Positives = 27/117 (23%), Gaps = 43/117 (36%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
              G          G +           ++     ++  TP   AA    ++        
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQA------- 59

Query: 145 TKEEDLKEEDRIELLV--AVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                      +  L+    +D                   A D NG TAL  +A  
Sbjct: 60  -----------LSQLLEDRDVD-------------------AVDENGRTALLFVAGL 86

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 37/194 (19%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR-------NQDTALHIAAGARRTLFVQEL- 72
             + A               N   VC  ++          +  LH AA    T  V+ L 
Sbjct: 34  ASYYAIADN-----------NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 73  -----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG-ATPL 126
                 +          +  GNTAL +A  SG  +  ++ V KN       G  G  T  
Sbjct: 83  FSGLDDS--------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSF 133

Query: 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARD 186
             A +L    ++ Y  S              + + + + G  D+ + L+ +        +
Sbjct: 134 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKN-GHVDMMILLLDYMTSTN-TNN 191

Query: 187 GNGET-ALHVLARK 199
                  + +    
Sbjct: 192 SLLFIPDIKLAIDN 205

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 22/156 (14%)

Query: 52  NQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
           +  +A + A        V  L       N                 L  AA    TKI +
Sbjct: 30  HGHSASYYAIADNNVRLVCTLLNAGALKN----------LLENEFPLHQAATLEDTKIVK 79

Query: 106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE--LLVAVI 163
           +++    +  S   +KG T L  A   G+ + +              +   +     AV+
Sbjct: 80  ILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                 +    +   P           + +H+  + 
Sbjct: 139 L-NDVSIVSYFLSEIPST--FDLAILLSCIHITIKN 171

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 55/227 (24%)

Query: 21  PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
           PLH AA   D    +      L+            +TAL+ A  +     V+        
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLDDSQF----DDKGNTALYYAVDSGNMQTVKLFVKKNWR 120

Query: 73  VNLMTPEDLALRNKVG-NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131
           +            K G  T+   A +     I    +++     +       + + +   
Sbjct: 121 LMF--------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIK 170

Query: 132 LGHKEMIWYLYSVTKEEDLKEEDR------------------IELLV---AVIDAGLYDV 170
            GH +M+  L            +                   ++ L      I +   + 
Sbjct: 171 NGHVDMMILLLD--YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLEN 228

Query: 171 ALD--------LIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209
            L         +I+ H +   +     +  +    +     +   +L
Sbjct: 229 VLLDDAEIAKMIIEKHVEYK-SDSYTKDLDIVKNNKLDEIISKNKEL 274

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 24/153 (15%)

Query: 55  TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NK 110
               I          ++L + ++ +D    +  G++A  +A      ++   ++     K
Sbjct: 3   DLSRINTWK-----SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 111 NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED---RIELLVAVIDAGL 167
           N         +   PL  AA L   +++  L       D  + D      L  AV   G 
Sbjct: 58  NLL-------ENEFPLHQAATLEDTKIVKILLF--SGLDDSQFDDKGNTALYYAVDS-GN 107

Query: 168 YDVALDLIQHHPQLAMARDGNG-ETALHVLARK 199
                  ++ + +L M     G +T+ +     
Sbjct: 108 MQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVML 139

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 23/155 (14%)

Query: 55  TALHIAAGARRTLFVQEL-------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
            ++H  A       ++E        VN          ++ G T L +A+  G  +    +
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNK--------PDERGFTPLIWASAFGEIETVRFL 55

Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVID 164
           +    + P I   +  + L +A+  G+ +++  L  + ++ D+   D      LL AV  
Sbjct: 56  LEWGAD-PHILAKERESALSLASTGGYTDIVGLL--LERDVDINIYDWNGGTPLLYAVRG 112

Query: 165 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                    L+     L      +G T + +    
Sbjct: 113 -NHVKCVEALLARGADLT-TEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 78
           PL  A+  G+ +  R       +P  +    ++ +++AL +A+    T  V  L+     
Sbjct: 39  PLIWASAFGEIETVRFLLEWGADPHIL----AKERESALSLASTGGYTDIVGLLL----- 89

Query: 79  E---DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 135
           E   D+ + +  G T L +A      K  E ++ +  +  +   + G TP+ +A  LG++
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYR 148

Query: 136 EMIWYL 141
           ++   +
Sbjct: 149 KVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 88  GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
            + ++   A  G     +  + K   L +    +G TPL  A+  G  E + +L  +   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--LEWG 59

Query: 148 EDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
            D     +     L +A    G  D+   L++    +    D NG T L    R 
Sbjct: 60  ADPHILAKERESALSLAS-TGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 29/117 (24%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD---------TALHIAAGARRTLFVQE 71
            L LA+  G             + V + + R+ D         T L  A        V+ 
Sbjct: 72  ALSLASTGG-----------YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 72  LVNLMTPE---DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
           L+         DL      G T +  A   G  K+ +V+ N   +L        A P
Sbjct: 121 LL-----ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL-FQSNLVPADP 171

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.8 bits (123), Expect = 7e-08
 Identities = 30/139 (21%), Positives = 43/139 (30%), Gaps = 42/139 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR----NQD----TALHIAAGARRTLFVQEL 72
            L  AA  G  D  R             ++       D    + LH+AA        + L
Sbjct: 5   KLLEAARAGQDDEVRIL-----------MANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 73  ------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKG 122
                  +         R KV  T L  AA  G   I EV++    + N      +    
Sbjct: 54  LRAGVSRD--------ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-----AKDMLK 100

Query: 123 ATPLCMAALLGHKEMIWYL 141
            T L  A    H+E++  L
Sbjct: 101 MTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 31/158 (19%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
             L  AA A +   V+ L                  + +G + L  AA  G     EV++
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT---------TDWLGTSPLHLAAQYGHFSTTEVLL 54

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVA 161
               +++      R     TPL MAA  GH  ++  L       D+  +D ++   L  A
Sbjct: 55  RAGVSRD-----ARTKVDRTPLHMAASEGHANIVEVLLK--HGADVNAKDMLKMTALHWA 107

Query: 162 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                  +V   LI++   +   +    +TA  +    
Sbjct: 108 TEH-NHQEVVELLIKYGADV-HTQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 43/140 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
           PLHLAA  G           +     V +              T LH+AA       V+ 
Sbjct: 37  PLHLAAQYG-----------HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L      VN         ++ +  TAL +A      ++ E+++    + +      +   
Sbjct: 86  LLKHGADVNA--------KDMLKMTALHWATEHNHQEVVELLIKYGADVH-----TQSKF 132

Query: 122 GATPLCMAALLGHKEMIWYL 141
             T   ++   G++++   L
Sbjct: 133 CKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 88  GNTALCFAAVSGVTKIAEVM------VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
               L  AA +G      ++         +          G +PL +AA  GH      L
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVL 53

Query: 142 YSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 198
                        +++   L +A  + G  ++   L++H   +  A+D    TALH    
Sbjct: 54  LR--AGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVN-AKDMLKMTALHWATE 109

Query: 199 K 199
            
Sbjct: 110 H 110

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.2 bits (124), Expect = 8e-08
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 30/161 (18%)

Query: 52  NQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
           +    L  AA A R   V+ L      VN          +  G T L  AA +G  +I E
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNA--------EDASGWTPLHLAAFNGHLEIVE 64

Query: 106 VMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---L 158
           V++    + N        + G TPL +AAL GH E++  L  +    D+   D      L
Sbjct: 65  VLLKNGADVN-----AVDHAGMTPLRLAALFGHLEIVEVL--LKNGADVNANDMEGHTPL 117

Query: 159 LVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
            +A +  G  ++   L+++   +  A+D  G+TA  +    
Sbjct: 118 HLAAMF-GHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDN 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 43/143 (30%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISR---------NQDTALHIAAGARRTLFVQE 71
           PLHLAA  G           + E V V +              T L +AA       V+ 
Sbjct: 50  PLHLAAFNG-----------HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 72  L------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNK 121
           L      VN          +  G+T L  AA+ G  +I EV++    + N      +   
Sbjct: 99  LLKNGADVNA--------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-----AQDKF 145

Query: 122 GATPLCMAALLGHKEMIWYLYSV 144
           G T   ++   G++++   L  +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.5 bits (117), Expect = 7e-07
 Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 29/135 (21%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
            L  AA  G  D  R       +  A       +  T LH+AA       V+ L      
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAE----DASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 128
           VN          +  G T L  AA+ G  +I EV++    + N         +G TPL +
Sbjct: 73  VN--------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-----ANDMEGHTPLHL 119

Query: 129 AALLGHKEMIWYLYS 143
           AA+ GH E++  L  
Sbjct: 120 AAMFGHLEIVEVLLK 134

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 25/194 (12%), Positives = 47/194 (24%), Gaps = 39/194 (20%)

Query: 14  NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV 73
           N  + Y  +  AA+ G ++     F    E    + S  +   L+            ++ 
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 74  NLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL------PSIRGNKGATP 125
             +  +  D+  R K G T        G   I        +         +         
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG-TTELCKIFLEKGADITALYKPYKIV 117

Query: 126 LCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR 185
           +         +               E + I L   +       +              +
Sbjct: 118 VFKNIFNYFVD---------------ENEMIPLYKLIFSQSGLQLL------------IK 150

Query: 186 DGNGETALHVLARK 199
           D  G TAL  + R 
Sbjct: 151 DKWGLTALEFVKRC 164

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 18/149 (12%)

Query: 19  YAPLHLAALKGDWDFARNFF---NLNPEAVCVRISRNQDTALHIAA--GARRTLFVQELV 73
           Y  L     +  +  +  F      + ++     ++   T        G        EL 
Sbjct: 43  YDVLRNNNDEARYKISM-FLINKGADIKSR----TKEGTTLFFPLFQGGGNDITGTTELC 97

Query: 74  NLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS------IRGNKGATP 125
            +   +  D+    K     +     +      E++               I+   G T 
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157

Query: 126 LCMAALLGHKEMIWYLYSVTKEEDLKEED 154
           L           +  +    K+ +LKE  
Sbjct: 158 LEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 29/136 (21%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQEL------ 72
           PLHLAA  G  +  +       +  A      +N  T LH+AA       V+ L      
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK----DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCM 128
           VN         ++K G T L  AA +G  ++ ++++    + N      +   G TPL +
Sbjct: 61  VNA--------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHL 107

Query: 129 AALLGHKEMIWYLYSV 144
           AA  GH E++  L   
Sbjct: 108 AARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 88  GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
           G T L  AA +G  ++ ++++    + N      +   G TPL +AA  GH E++  L  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 144 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
                D+  +D+     L +A  + G  +V   L++    +  A+D NG T LH+ AR 
Sbjct: 57  --AGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.6 bits (107), Expect = 6e-06
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 23/100 (23%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           T LH+AA       V+ L      VN         ++K G T L  AA +G  ++ ++++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNA--------KDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
               + N      +   G TPL +AA  GH E++  L   
Sbjct: 56  EAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 15/198 (7%)

Query: 17  TSYAPLHLAALKGDWDFARNF-FNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNL 75
            S     +AA+ G           L  + +   I      A  +AA       +  L  L
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 76  MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI-RGNKGATPLCMAALL-G 133
              E +A+       A   AA +G   +   +        +     +       AA+  G
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 134 HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMA--------- 184
           H  +I +L          E    E     ++  +      L + H    ++         
Sbjct: 211 HHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 270

Query: 185 ---RDGNGETALHVLARK 199
                  G   L  L R+
Sbjct: 271 TKSECLQGFYMLRNLIRR 288

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 38/205 (18%), Positives = 56/205 (27%), Gaps = 32/205 (15%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
              LAA  G          L P  +   I      A  +AA       +  L  L   E 
Sbjct: 131 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190

Query: 81  LALRNKVGNTALCFAAVSG----VTKI-----AEVM-------------VNKNRELPSIR 118
            A+       A  +AAV      V          +              VN        R
Sbjct: 191 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 250

Query: 119 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178
             +      ++   G  ++      VTK E L+    +  L+   D  L D    L+   
Sbjct: 251 LKEMHDAFKLSNPDGVFDL------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 179 PQLAMA----RDGNGETALHVLARK 199
              A+A      G+    L +  R 
Sbjct: 305 GIKALAPTATIPGDANELLRLALRL 329

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 28/211 (13%), Positives = 45/211 (21%), Gaps = 57/211 (27%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA---------------GARR 65
              LAA  G          L P      I      A   AA                   
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 66  T---------------LFVQELVNLMTPEDLALRN---------------KVGNTALCFA 95
                            F+   VN +     A +                  G   L   
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL 285

Query: 96  AVSGVTKIAEVMVNKNRELPSIRG--------NKGATPLCMAALLGHKEMIWYLYSVTKE 147
                  + +  +     +P I+               L +A  LG++     L  ++  
Sbjct: 286 IRRNDEVLLDD-IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL--LSIP 342

Query: 148 EDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178
             L         +     G  D+    ++HH
Sbjct: 343 SVLALTKANNYYINETG-GRLDLRAVALEHH 372

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.9 bits (118), Expect = 4e-07
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 33/137 (24%)

Query: 21  PLHLAALKGDWDFARNFFNL---NPEAVCVRISRNQDTALHIAA-GARRTLFVQEL---- 72
            L  AA +GD    R   +    +P+A+    +R   TAL +   G+       EL    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDAL----NRFGKTALQVMMFGSTAI--ALELLKQG 58

Query: 73  --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 126
              N+        ++  G + +  AA +G     +V+V    + N     +    GA P+
Sbjct: 59  ASPNV--------QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-----VPDGTGALPI 105

Query: 127 CMAALLGHKEMIWYLYS 143
            +A   GH  ++ +L +
Sbjct: 106 HLAVQEGHTAVVSFLAA 122

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 55  TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
             L  AA       V+ L+           N+ G TAL      G T IA  ++ +    
Sbjct: 4   DRLSGAAARGDVQEVRRLL-HRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS- 60

Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVA 171
           P+++   G +P+  AA  G  + +  L       D+   D      + +AV + G   V 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVE--HGADVNVPDGTGALPIHLAVQE-GHTAVV 117

Query: 172 LDLIQH---HPQLAMARDGNGETALHVLARK 199
             L      H      RD  G T L +  ++
Sbjct: 118 SFLAAESDLH-----RRDARGLTPLELALQR 143

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 22/96 (22%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           + +H AA       ++ L      VN+         +  G   +  A   G T +   + 
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGADVNV--------PDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 109 ---NKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
              + +      R  +G TPL +A   G ++++  L
Sbjct: 122 AESDLH-----RRDARGLTPLELALQRGAQDLVDIL 152

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 37/139 (26%)

Query: 21  PLHLAALKGDWDFARNFF----NLNPEAVCVRISRNQD--TALHIAAGARRTLFVQEL-- 72
            L  AA  G  D  R       ++N        ++++   T L++A        V+ L  
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN--------AKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 73  ----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGAT 124
               VN          + +G T L  AA  G  +IAEV++    + N      +   G T
Sbjct: 69  NGADVNA--------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-----AQDKFGKT 115

Query: 125 PLCMAALLGHKEMIWYLYS 143
              ++   G++++   L  
Sbjct: 116 AFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 23/99 (23%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
             L  AA A +   V+ L      VN         +++ G T L  A   G  +I EV++
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNA--------KDEYGLTPLYLATAHGHLEIVEVLL 67

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
               + N          G TPL +AA +GH E+   L  
Sbjct: 68  KNGADVN-----AVDAIGFTPLHLAAFIGHLEIAEVLLK 101

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 24/123 (19%)

Query: 88  GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
               L  AA +G      +++    + N      +   G TPL +A   GH E++  L  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 144 VTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQH----HPQLAMARDGNGETALHVL 196
                D+   D I    L +A    G  ++A  L++H    +     A+D  G+TA  + 
Sbjct: 69  --NGADVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGADVN-----AQDKFGKTAFDIS 120

Query: 197 ARK 199
              
Sbjct: 121 IGN 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.0 bits (113), Expect = 9e-07
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
           +K GNT L  AA +G  +  + ++    + N      R   G TPL +AA  GH E++  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-----ARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 141 LYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 194
           L +  K  D+    +       +A  + G +++   L      +  AR        H
Sbjct: 61  LLA--KGADVNARSKDGNTPEHLAKKN-GHHEIVKLLDAKGADVN-ARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 23/105 (21%)

Query: 50  SRNQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKI 103
           S++ +T LH AA       V++L      VN         R+K GNT L  AA +G  +I
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA--------RSKDGNTPLHLAAKNGHAEI 57

Query: 104 AEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
            ++++    + N      R   G TP  +A   GH E++  L + 
Sbjct: 58  VKLLLAKGADVN-----ARSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 20/163 (12%)

Query: 55  TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG---VTKIAEVMVNKN 111
           T LH          V+ LV   +  +    + +G + L  A  S     +   E +++  
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 112 RELPSIRGNKGATPLCMAALLGHKE-----MIWYLYSVTKEEDLKEEDRIELLVAVIDAG 166
                +  +   T L    +            +YL  +      K+   I+      ++ 
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 167 LYDVALDLIQHHPQLAM----------ARDGNGETALHVLARK 199
             D   +      +             A+D NG+T L++ AR 
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 36/262 (13%)

Query: 84  RNKVGNTALCFAAVSGVTK-IAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY 142
                N      +   + + + +   N    L       G TPL     + + E++ +L 
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL- 150

Query: 143 SVTKEEDLKEEDRIE---LLVAVIDAGLYD--VALDLIQHHPQLAMARDGNGETALHVLA 197
            V    +    D +    L+ AV     YD      L+ +     +  D    T LH + 
Sbjct: 151 -VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 209

Query: 198 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL 257
                       G      Y    +  ++   ++  Q   +     E+    +D      
Sbjct: 210 IT------SGMTGCSAAAKY---YLDILMG-WIVKKQNRPIQSGTNEKESKPNDKNGERK 259

Query: 258 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL 317
                          ++   + L  +  N++   D +  +  +IA       I + + + 
Sbjct: 260 D--------------SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 318 GAHKDLIASYKDENNNNMLHLA 339
           GA   +     +++    +   
Sbjct: 306 GADPFI----ANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 21  PLHLAAL----KGDWDFARNF------FNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 70
            LH   +     G    A+ +      + +  +   ++   N+  +        R   + 
Sbjct: 204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263

Query: 71  ELVNLMTPEDLAL--RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 128
           E ++L       L  ++  G+T L  AA  G   I + +++   + P I    G  P+  
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDF 322

Query: 129 AA 130
            A
Sbjct: 323 GA 324

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 84  RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
                +  L  AA  G  +    ++    + P+     G  P+ +   +G  ++   L  
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMM-MGSAQVAELL-- 63

Query: 144 VTKEEDLKEEDRIELLVAVIDA---GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           +    +    D   L   V DA   G  D  + L +   +L    D  G   + +   +
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 43/140 (30%)

Query: 21  PLHLAALKGDWDFARNFFNL-----NPEAVCVRISRNQDTALHIAA-------------G 62
            L  AA +G  +  R    L     +P A+    +R     + +               G
Sbjct: 15  GLATAAARGQVETVRQ---LLEAGADPNAL----NRFGRRPIQVMMMGSAQVAELLLLHG 67

Query: 63  ARRTLFVQELVNLMTPEDLALRNKVGNT-ALCFAAVSGVTKIAEVMVNKNRELPSIRGNK 121
           A                +    +    T  +  AA  G      V+         +    
Sbjct: 68  A----------------EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAW 110

Query: 122 GATPLCMAALLGHKEMIWYL 141
           G  P+ +A   GH+++  YL
Sbjct: 111 GRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 51  RNQDTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIA 104
            + D  L  AA   +   V++L       N          N+ G   +      G  ++A
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPN--------ALNRFGRRPIQVMM-MGSAQVA 60

Query: 105 EVMVNKNRELPSIRGNKGAT-PLCMAALLGHKEMIWYL 141
           E+++    E P+       T P+  AA  G  + +  L
Sbjct: 61  ELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVL 97

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.4 bits (109), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 23/100 (23%)

Query: 55  TALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           T LH+AA       V+ L      VN         ++K G T L  AA +G  ++ ++++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNA--------KDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 109 ----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
               + N      +   G TPL +AA  GH E++  L   
Sbjct: 56  EAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 88  GNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
           G T L  AA +G  ++ ++++    + N      +   G TPL +AA  GH E++  L  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 144 V 144
            
Sbjct: 57  A 57

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 23/101 (22%)

Query: 54  DTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
           D     A        V++       VN           + G   L +AA  G  +I E +
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNR--------TLEGGRKPLHYAADCGQLEILEFL 59

Query: 108 V----NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
           +    + N            TPL  A   GH   +  L S 
Sbjct: 60  LLKGADIN-----APDKHHITPLLSAVYEGHVSCVKLLLSK 95

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 33/132 (25%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQD--TALHIAAGARRTLFVQEL---- 72
               A   GD D  +++     +           +     LH AA   +   ++ L    
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNR------TLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 73  --VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPL 126
             +N          +K   T L  A   G     ++++    +K      ++G  G T  
Sbjct: 64  ADINA--------PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-----VKGPDGLTAF 110

Query: 127 CMAALLGHKEMI 138
                   K ++
Sbjct: 111 EATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
             + +    +A  +G     +  V    + N          G  PL  AA  G  E++ +
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEILEF 58

Query: 141 LYSVTKEEDLKEEDRIE---LLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
           L    K  D+   D+     LL AV + G       L+         +  +G TA   
Sbjct: 59  LLL--KGADINAPDKHHITPLLSAVYE-GHVSCVKLLLSKGADKT-VKGPDGLTAFEA 112

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 39  NLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMT-PEDLALRNKVGNTALCFAAV 97
           +L  +          +TALH+A  +     +  +  L+    +L  +   G+TAL +  +
Sbjct: 155 DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 214

Query: 98  SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
           +   +  ++++ + +    I    G TPL +A  L H+ 
Sbjct: 215 TDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKHEH 252

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
            +     L  AA  G  +    ++      P+   + G  P+ +  + G   +   L  +
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELL--L 64

Query: 145 TKEEDLKEEDRIELLVAVIDA---GLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
               +    D   L   V DA   G  D  + L +   +L   RD  G   + +    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEEL 121

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAA-GARRTLFVQELVNLMT 77
            L  AA +G  +  R       NP A     +      + +   G+ R    + L+    
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMMMGSARV--AELLLLHGA 68

Query: 78  PEDLALRNKVGNT-ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
             +    +    T  +  AA  G      V+         +R   G  P+ +A  LGH++
Sbjct: 69  --EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRD 125

Query: 137 MIWYL 141
           +  YL
Sbjct: 126 VARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 29/156 (18%)

Query: 54  DTALHIAAGARRTLFVQEL------VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
              L  AA   R   V+ L       N          N  G   +      G  ++AE++
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPN--------APNSYGRRPIQVMM-MGSARVAELL 63

Query: 108 VNKNRELPSIRGNKGAT-PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIE---LLVAVI 163
           +    E P+       T P+  AA  G  + +  L        L   D      + +A  
Sbjct: 64  LLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVL--HRAGARLDVRDAWGRLPVDLAEE 120

Query: 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
             G  DVA  L              G     + A +
Sbjct: 121 L-GHRDVARYLRAAA---G---GTRGSNHARIDAAE 149

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 85  NKVGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
                  L  AA +G      +++    +        +   G+TPL +AA  GH E++  
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVA-----AKDKNGSTPLHLAARNGHLEVVKL 75

Query: 141 LYS 143
           L  
Sbjct: 76  LLE 78

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 39  NLNPEAVCVRISRNQDTALHIA--AGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 96
           +             ++  LH+A     + +L + + + +     L  +   GNTAL +AA
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI-IQNGGHLDAKAADGNTALHYAA 234

Query: 97  VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
           +       ++++ K R L       G T L +A    HKE
Sbjct: 235 LYNQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKE 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	570
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-56  Score=462.50  Aligned_cols=371  Identities=18%  Similarity=0.177  Sum_probs=280.1

Q ss_pred             ccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc
Q 008328            7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK   86 (570)
Q Consensus         7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~   86 (570)
                      .|.+++..|.+|+||||+||..|+.++|++|++. +.+++.+ |..|+||||+|++.|+.+++++|++  .|++++.+|.
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~   78 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAK   78 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCT
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCCC
Confidence            5778888999999999999999999999999876 5566666 7889999999999999999999999  7899999999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      +|+||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++.+..+..|.||||+|+..|
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG  157 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999887 68889999999999999999999999999998888889999999999999


Q ss_pred             cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccc--hhccchhhhHHHHHHHHHHHHH
Q 008328          167 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM--RAILDPKLMHLQALELVKRLWE  244 (570)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lh~~~~~~~~~l~~  244 (570)
                      +.+++++|+++++++ +..+.+|.||||+|+..+       +.++++.|+..+.+.  .+..+.+|+|.++......+++
T Consensus       158 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          158 KVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHN-------NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTT-------CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcC-------CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999998887 578888999999999887       477888888665443  4456778888877433333222


Q ss_pred             HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhh
Q 008328          245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLI  324 (570)
Q Consensus       245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~  324 (570)
                      . +...+.+++..+..|.||||+|+..|+.+++++|++++++ .+..|..|+||||+|+..|+.+++++|+++|++++. 
T Consensus       230 ~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-  306 (437)
T 1n11_A          230 S-LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-  306 (437)
T ss_dssp             H-HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-
T ss_pred             H-HHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC-
Confidence            2 2234667777777778888888888888888888877777 456677778888888888888888888877777763 


Q ss_pred             hhhcccCCCcHHHHhhhhCCCCcc--ccCCchhhhhh-----------HhhhhHHHhhhhcCc-hhhhhhccCCCCcchh
Q 008328          325 ASYKDENNNNMLHLAGKLAPPDRL--KIDSGAALQLR-----------RELHWFKEIEKVVQP-SYREAKNSEGRTPHIL  390 (570)
Q Consensus       325 ~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~~~~-----------~~l~~~~~~~~~~~~-~~~~~~n~~G~Tpl~~  390 (570)
                         +|..|+||||+|+..|+.+.+  ++..|++++.+           ......+.++.++.. .+.+.+|.+|+||+++
T Consensus       307 ---~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~  383 (437)
T 1n11_A          307 ---TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI  383 (437)
T ss_dssp             ---CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             ---CCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence               777788888888777776633  23334433221           122223445555543 5668888899999998


Q ss_pred             hhhhhh
Q 008328          391 FSEEHR  396 (570)
Q Consensus       391 a~~~~~  396 (570)
                      |.+...
T Consensus       384 A~~~g~  389 (437)
T 1n11_A          384 AKRLGY  389 (437)
T ss_dssp             HHHTTC
T ss_pred             HHHcCc
Confidence            877653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-55  Score=459.86  Aligned_cols=332  Identities=20%  Similarity=0.193  Sum_probs=271.4

Q ss_pred             cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328            6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN   85 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d   85 (570)
                      ..|.++|..|..|.||||+||..|+.+++++|++. +.+++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|
T Consensus        35 ~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~  110 (437)
T 1n11_A           35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLE--NNANPNLAT  110 (437)
T ss_dssp             HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHh--CCCCCCCCC
Confidence            45778888888888999999999999988888876 4556666 7888899999999999999998888  788888888


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHh
Q 008328           86 KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA  165 (570)
Q Consensus        86 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  165 (570)
                      ..|.||||+|+..|+.+++++|++++++.. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus       111 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  189 (437)
T 1n11_A          111 TAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH  189 (437)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence            888899999998899899988888888876 5778888899999988888899999888888888888888899999988


Q ss_pred             CcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCcc--chhccchhhhHHHHHHHHHHHH
Q 008328          166 GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG--MRAILDPKLMHLQALELVKRLW  243 (570)
Q Consensus       166 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lh~~~~~~~~~l~  243 (570)
                      |+.+++++|++++++. +..+.+|.||||+|+..+       +.++++.|+..+.+  ..+..+.||+|.++......++
T Consensus       190 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~-------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  261 (437)
T 1n11_A          190 NNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN-------QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV  261 (437)
T ss_dssp             TCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            8889998888888876 577888889999888887       47888888876554  3456788888888855444444


Q ss_pred             HHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328          244 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  323 (570)
Q Consensus       244 ~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  323 (570)
                      +. +...+.+++..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.
T Consensus       262 ~~-Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          262 AL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  339 (437)
T ss_dssp             HH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             HH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC
Confidence            32 3445788888888888999999988888999999888888 567788888999999988888899988888888874


Q ss_pred             hhhhcccCCCcHHHHhhhhCCCCcc--ccCCchhh
Q 008328          324 IASYKDENNNNMLHLAGKLAPPDRL--KIDSGAAL  356 (570)
Q Consensus       324 ~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~  356 (570)
                          +|..|+||||+|++.|+.+.+  ++..|+++
T Consensus       340 ----~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          340 ----KTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             ----CCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence                888889999999888877633  33344443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.7e-46  Score=375.78  Aligned_cols=289  Identities=17%  Similarity=0.108  Sum_probs=251.8

Q ss_pred             ccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc
Q 008328            7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK   86 (570)
Q Consensus         7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~   86 (570)
                      .+.+.+..+..|.|+||.||+.|+.+.++.++...+.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|.
T Consensus        13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~   89 (351)
T 3utm_A           13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDK   89 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCT
T ss_pred             CceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCC
Confidence            344555667789999999999999999999999877878777 8999999999999999999999999  8999999999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH---
Q 008328           87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI---  163 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---  163 (570)
                      .|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.+|++.|+   
T Consensus        90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           90 GGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh
Confidence            99999999999999999999999999988 68999999999999999999999999999999999999998877654   


Q ss_pred             ------------------HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhc
Q 008328          164 ------------------DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAI  225 (570)
Q Consensus       164 ------------------~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  225 (570)
                                        ..++.+.++.++...... ...+..|.||||+|+..++..    .                 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~----~-----------------  226 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPK----R-----------------  226 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTT----H-----------------
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCcc----H-----------------
Confidence                              455555666666555443 356778889999998875310    1                 


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHh
Q 008328          226 LDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH  305 (570)
Q Consensus       226 ~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  305 (570)
                                .+.++.     +...+.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+
T Consensus       227 ----------~~~~~~-----Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          227 ----------KQVAEL-----LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALA  290 (351)
T ss_dssp             ----------HHHHHH-----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             ----------HHHHHH-----HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence                      123333     3345889999999999999999999999999999999999 677899999999999999


Q ss_pred             CchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhh
Q 008328          306 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK  341 (570)
Q Consensus       306 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~  341 (570)
                      |+.+++++|+++|++++.    +|..|+||+|+|..
T Consensus       291 ~~~~~v~~Ll~~gad~~~----~~~~g~tal~~a~~  322 (351)
T 3utm_A          291 GHLQTCRLLLSYGSDPSI----ISLQGFTAAQMGNE  322 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTC----CCTTSCCHHHHSCH
T ss_pred             CcHHHHHHHHHcCCCCCC----cCCCCCChhhhhhH
Confidence            999999999999999985    99999999999943

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-45  Score=359.83  Aligned_cols=267  Identities=21%  Similarity=0.234  Sum_probs=240.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      .+|.||||.|++.|+.+++++|++.+ .+++...+..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHH
Confidence            46899999999999999999999864 45665557889999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCcccc----------ccchhhHHHHHHHh
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDA  165 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~  165 (570)
                      +..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||.|+..
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence            99999999999999999987 68999999999999999999999999999999887          77899999999999


Q ss_pred             CcHHHHHHHHhh-CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328          166 GLYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  244 (570)
Q Consensus       166 ~~~~~~~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~  244 (570)
                      |+.+++++|++. +.++ +.+|..|+||||+|+..++...                              ..+.++.   
T Consensus       159 ~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~------------------------------~~~i~~~---  204 (285)
T 1wdy_A          159 GHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD------------------------------VEAITHL---  204 (285)
T ss_dssp             TCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTT------------------------------HHHHHHH---
T ss_pred             CCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccch------------------------------HHHHHHH---
Confidence            999999999998 7776 6899999999999999875210                              0122333   


Q ss_pred             HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328          245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  323 (570)
Q Consensus       245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  323 (570)
                        +...+.+++.+|..|.||||+|+..|+.+++++|++ .|++ .+.+|..|+||||+|+..++.+++++|+++|++++.
T Consensus       205 --Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          205 --LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             --HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             --HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence              334588999999999999999999999999999999 7888 678899999999999999999999999999999884

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.7e-45  Score=367.37  Aligned_cols=292  Identities=20%  Similarity=0.220  Sum_probs=222.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      .+|.||||.||+.|+.++|+.||+. +.+++.+.+..|+||||+||..|+.++|++|++  +|++++.+|..+.+|++.+
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCchhHHH
Confidence            3478999999999999999999986 577887744569999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCcccc----------ccchhhHHHHHHHh
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDA  165 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~  165 (570)
                      +..+..++++.+++++++++ ..|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            99999999999999999988 69999999999999999999999999999988754          44689999999999


Q ss_pred             CcHHHHHHHHhh-CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328          166 GLYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  244 (570)
Q Consensus       166 ~~~~~~~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~  244 (570)
                      |+.+++++|+++ |+++ +.+|..|.||+|.++..+..   +....+++.|+                            
T Consensus       179 g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~---~~~~~i~~lLl----------------------------  226 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDD---SDVEAITHLLL----------------------------  226 (337)
T ss_dssp             TCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCT---TTHHHHHHHHH----------------------------
T ss_pred             CCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCc---ccHHHHHHHHH----------------------------
Confidence            999999999975 7776 68999999999988765431   01122333333                            


Q ss_pred             HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328          245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM-YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  323 (570)
Q Consensus       245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  323 (570)
                          ..|++++.+|..|.||||+|+..|+.++++.|++. +++ ++.+|.+|+||||+|+++|+.++|++|+++|+++|.
T Consensus       227 ----~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          227 ----DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             ----HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             ----HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence                33555555555666666666666666666666553 344 445556666666666666666666666666655442


Q ss_pred             hhhhcccCCCcHHHHhhhhCCCC--ccccCCchhhh
Q 008328          324 IASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQ  357 (570)
Q Consensus       324 ~~n~~d~~G~TpLh~A~~~~~~~--~~~~~~ga~~~  357 (570)
                               .||||+|++.++.+  ++++..||+++
T Consensus       302 ---------~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          302 ---------GDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             ---------CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             ---------CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence                     23666666655554  23344555444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.8e-45  Score=368.88  Aligned_cols=307  Identities=15%  Similarity=0.096  Sum_probs=255.5

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      +..|.|+||.|++.|+.+.++.|+.. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   98 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence            67789999999999999999999985 689999999999999999999999999999999999987 6899999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||+|+++..+.       .
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~-------~  170 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPEL-------R  170 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHH-------H
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhh-------H
Confidence            9999999999999999999999999999999999999999999999999998 5899999999999986542       2


Q ss_pred             hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHc---CcHHHHHHHHHhCCc
Q 008328          210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVEL---GNVEFLMVLIQMYPN  286 (570)
Q Consensus       210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~  286 (570)
                      +.++...          ...++..++.......+...+... ......+..|.||||+|+..   ++.+++++|++.|++
T Consensus       171 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~  239 (351)
T 3utm_A          171 ERLTYEF----------KGHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN  239 (351)
T ss_dssp             HHHHHHH----------HHHHHHHHHHTTCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred             HHHHhhh----------cccHHHHHHHhccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence            2222221          122333333332223333333322 23334567799999999999   678999999999999


Q ss_pred             ccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchhhhhhHhhhhHH
Q 008328          287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFK  366 (570)
Q Consensus       287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~  366 (570)
                       ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|++.++.+.+                  
T Consensus       240 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~----~d~~g~t~L~~A~~~~~~~~v------------------  296 (351)
T 3utm_A          240 -VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAALAGHLQTC------------------  296 (351)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHTCHHHH------------------
T ss_pred             -cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCcHHHH------------------
Confidence             677899999999999999999999999999999985    999999999999999986532                  


Q ss_pred             HhhhhcCc-hhhhhhccCCCCcchhhhhhhhhhhhhh
Q 008328          367 EIEKVVQP-SYREAKNSEGRTPHILFSEEHRRLVREG  402 (570)
Q Consensus       367 ~~~~~~~~-~~~~~~n~~G~Tpl~~a~~~~~~~~~~~  402 (570)
                        +.++.. .+.+.+|.+|+||+++|.+...+.+.+.
T Consensus       297 --~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~  331 (351)
T 3utm_A          297 --RLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES  331 (351)
T ss_dssp             --HHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC
T ss_pred             --HHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhc
Confidence              222221 3558899999999999987766665544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-43  Score=357.99  Aligned_cols=279  Identities=16%  Similarity=0.150  Sum_probs=239.7

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc-CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM  128 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~  128 (570)
                      +.+|+||||.|++.|+.++|++||+  .|+++|.+|. .|.||||+|+..|+.++|++|+++|++++ .++..+.+|++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~--~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~   98 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhccCCCchhHH
Confidence            3458899999999999999999999  8999998876 49999999999999999999999999988 699999999999


Q ss_pred             HHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccc---------cccCCCCCcHHHHHHcC
Q 008328          129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA---------MARDGNGETALHVLARK  199 (570)
Q Consensus       129 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~  199 (570)
                      ++..++.+++..+++.+++++..|..|.||+|+|+..|+.+++++|+++|+++.         ...+..|.||||+|++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999998752         23456799999999998


Q ss_pred             CCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCc----HH
Q 008328          200 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VE  275 (570)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~----~~  275 (570)
                      |+       .++                           ++.+++    ..+++++..|..|.||+|.++..++    .+
T Consensus       179 g~-------~~~---------------------------v~~LL~----~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~  220 (337)
T 4g8k_A          179 GH-------VEV---------------------------LKILLD----EMGADVNACDNMGRNALIHALLSSDDSDVEA  220 (337)
T ss_dssp             TC-------HHH---------------------------HHHHHH----HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHH
T ss_pred             CC-------HHH---------------------------HHHHHh----ccCCCcCccCCCCCcHHHHHHHHcCcccHHH
Confidence            85       333                           333322    3488999999999999998886543    46


Q ss_pred             HHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh-CchhhhhhhhcccCCCcHHHHhhhhCCCC--ccccCC
Q 008328          276 FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDS  352 (570)
Q Consensus       276 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~n~~d~~G~TpLh~A~~~~~~~--~~~~~~  352 (570)
                      ++++|+++|++ ++.+|..|+||||+|+..|+.++++.|++. |++++    .+|.+|+||||+|++.|+.+  ++++..
T Consensus       221 i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn----~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          221 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             HHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT----CBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc----CcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            88999999999 677899999999999999999999999985 78887    49999999999999999987  456677


Q ss_pred             chhhhhhHhhhh------HHHhhhhcCc
Q 008328          353 GAALQLRRELHW------FKEIEKVVQP  374 (570)
Q Consensus       353 ga~~~~~~~l~~------~~~~~~~~~~  374 (570)
                      |++++.+..+.+      .+.++.++..
T Consensus       296 GAd~n~~~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          296 GASTDCGDLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             SCSSTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            887766554433      3455655543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-43  Score=345.54  Aligned_cols=258  Identities=14%  Similarity=0.111  Sum_probs=180.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCcc----------chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccc
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPE----------AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR   84 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~----------~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~   84 (570)
                      ...|.|+||+|+..|+.+.+..++...+.          ..+.+ |.+|+||||+|+..|+.+++++|++  .|++++.+
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~   88 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNII   88 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHH--TTCCSCEE
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCc
Confidence            45689999999999998887776554321          23333 8899999999999999999999999  89999999


Q ss_pred             ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHH
Q 008328           85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID  164 (570)
Q Consensus        85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  164 (570)
                      |.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+.
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~  166 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR  166 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence            9999999999999999999999999999987 689999999999999999999999999999988654 49999999999


Q ss_pred             hCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328          165 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE  244 (570)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~  244 (570)
                      .|+.+++++|++.++++ +.+|.+|+||||+|+..++       .++                           ++.+++
T Consensus       167 ~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~-------~~~---------------------------v~~Ll~  211 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ-------RAC---------------------------VKKLLE  211 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC-------HHH---------------------------HHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc-------HHH---------------------------HHHHHH
Confidence            99999999999998887 5777777777777777664       222                           222222


Q ss_pred             HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh-Cchh
Q 008328          245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHK  321 (570)
Q Consensus       245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~  321 (570)
                           .+.+++. +..|.||||+|+..|+.+++++|+++|++ .+.+|.+|+||||+|+  ++.+++++|+++ |+++
T Consensus       212 -----~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          212 -----SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             -----TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             -----CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence                 2445543 55666777777777777777777777666 4556667777777766  345666666666 5544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-43  Score=343.70  Aligned_cols=250  Identities=17%  Similarity=0.154  Sum_probs=227.9

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCccccccc-ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      .+|+||||.|++.|+.+++++|++  .|.+++.+ +..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            358899999999999999999999  89999988 8889999999999999999999999999987 6899999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccccccc----------CCCCCcHHHHHHcC
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR----------DGNGETALHVLARK  199 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~  199 (570)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++++++. ..          +..|.||||+|+..
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-cccccHHHHHhhccCCCcHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999998873 44          78899999999998


Q ss_pred             CCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCc----HH
Q 008328          200 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VE  275 (570)
Q Consensus       200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~----~~  275 (570)
                      ++       .++                           ++.++    ...+.+++..|..|.||||.|+..++    .+
T Consensus       159 ~~-------~~~---------------------------v~~Ll----~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  200 (285)
T 1wdy_A          159 GH-------VEV---------------------------LKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             TC-------HHH---------------------------HHHHH----HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred             CC-------HHH---------------------------HHHHH----HhcCCCCCccCCCCCCHHHHHHHccccchHHH
Confidence            75       333                           33322    23378889999999999999999999    99


Q ss_pred             HHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH-hCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          276 FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       276 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      ++++|+++|++ .+.+|..|+||||+|+.+|+.+++++|++ .|++++.    +|.+|+||||+|++.++.+.
T Consensus       201 i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~----~~~~g~t~l~~A~~~~~~~i  268 (285)
T 1wdy_A          201 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC----CCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc----cCCCCCcHHHHHHHcCcHHH
Confidence            99999999999 67789999999999999999999999999 8999884    99999999999999988653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-43  Score=360.50  Aligned_cols=264  Identities=19%  Similarity=0.198  Sum_probs=212.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHH--------HccCcccccc
Q 008328           12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV--------NLMTPEDLAL   83 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll--------~~~~~~~~~~   83 (570)
                      +..|..|+||||.||..|+ ++++.|+.   .+++.+.+..|+||||+|+..|+.+++++|+        +  .|++++.
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~--~ga~vn~  161 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVNA  161 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH--TCCCTTC
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCCCCcC
Confidence            3557889999999999554 67766653   3456662378999999999999988887776        5  7899999


Q ss_pred             cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc---CCccccccchhhHHH
Q 008328           84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT---KEEDLKEEDRIELLV  160 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~  160 (570)
                      +|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++++   ++++..+..|.||||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~  240 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  240 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence            99999999999999999999999999999987 68999999999999999999999999988   789999999999999


Q ss_pred             HHHHhC---cHHHHHHHHhhCccccc-------ccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhh
Q 008328          161 AVIDAG---LYDVALDLIQHHPQLAM-------ARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL  230 (570)
Q Consensus       161 ~A~~~~---~~~~~~~Ll~~~~~~~~-------~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  230 (570)
                      +|+..+   +.+++++|+++|+++..       ..|..|+||||+|+..|+       .+                    
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-------~~--------------------  293 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-------MP--------------------  293 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-------HH--------------------
T ss_pred             HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC-------HH--------------------
Confidence            999988   89999999999988731       256788888888888874       33                    


Q ss_pred             hHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHH
Q 008328          231 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI  310 (570)
Q Consensus       231 lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  310 (570)
                             .++.+++.    .+.+++..|..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+.+|+.++
T Consensus       294 -------~v~~Ll~~----~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~i  361 (373)
T 2fo1_E          294 -------IVKYLVGE----KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNI  361 (373)
T ss_dssp             -------HHHHHHHH----SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             -------HHHHHHHh----cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHH
Confidence                   33333322    2477888888888888888888888888888888888 56678888888888888888888


Q ss_pred             HHHHHHhCchh
Q 008328          311 FNLIYELGAHK  321 (570)
Q Consensus       311 v~~Ll~~g~~~  321 (570)
                      +++|++++++.
T Consensus       362 v~~Ll~~~a~~  372 (373)
T 2fo1_E          362 VDIFDRCRPER  372 (373)
T ss_dssp             HHHHHTTC---
T ss_pred             HHHHHhcCccc
Confidence            88888887653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.1e-43  Score=342.41  Aligned_cols=245  Identities=17%  Similarity=0.134  Sum_probs=196.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcc---------CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCC
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLM---------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN  120 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  120 (570)
                      ...|.|+||+|+..|+.+.+..++...         ....++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence            578999999999999987777765521         123467789999999999999999999999999999987 6999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328          121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      .|.||||+|+..|+.+++++|+++|++++.++.+|.||||+|+..|+.+++++|+++++++.  .+.+|.||||+|+..|
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRG  168 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999873  4566999999999988


Q ss_pred             CccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHH
Q 008328          201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL  280 (570)
Q Consensus       201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  280 (570)
                      +       .+                           .++.++     ..+.+++..|..|.||||+|+..|+.+++++|
T Consensus       169 ~-------~~---------------------------~v~~Ll-----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          169 H-------VE---------------------------CVNSLI-----AYGGNIDHKISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             C-------HH---------------------------HHHHHH-----HTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             C-------HH---------------------------HHHHHH-----HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            5       33                           333333     34788899999999999999999999999999


Q ss_pred             HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhh
Q 008328          281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKL  342 (570)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~  342 (570)
                      +++|+++.  .|..|+||||+|+..++.+++++|+++|++++.    +|.+|+||||+|+..
T Consensus       210 l~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          210 LESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADTQA----KNAEGKRPVELVPPE  265 (285)
T ss_dssp             HHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTT
T ss_pred             HHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHhcCc
Confidence            99999954  389999999999999999999999999999984    999999999999954

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.3e-42  Score=329.66  Aligned_cols=232  Identities=21%  Similarity=0.233  Sum_probs=160.5

Q ss_pred             CcccCCCCCChHHHHHHHcC-------------CHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHcc
Q 008328           10 GVERNCFTSYAPLHLAALKG-------------DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM   76 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g-------------~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~   76 (570)
                      |+|.+|.+|+||||+|+..|             +.++++.|++.+.. ++...|..|+||||+|+..|+.+++++|++  
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--   78 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-LHNQTDRTGETALHLAARYSRSDAAKRLLE--   78 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH--
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHH--
Confidence            68899999999999999987             88888888876444 433337888999999999999999999998  


Q ss_pred             CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchh
Q 008328           77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI  156 (570)
Q Consensus        77 ~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  156 (570)
                      .|++++.+|..|.||||+|+..|+.+++++|+++++.....++..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence            78888888888999999999999999999999888733336888899999999999999999999998888888888888


Q ss_pred             hHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHH
Q 008328          157 ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL  236 (570)
Q Consensus       157 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~  236 (570)
                      ||||+|+..|+.+++++|+++|+++ +.+|                                                  
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~--------------------------------------------------  187 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANK-DMQN--------------------------------------------------  187 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCT-TCCC--------------------------------------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCcC--------------------------------------------------
Confidence            8888888888888888888877665 2333                                                  


Q ss_pred             HHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          237 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       237 ~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                                            ..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+++|+.+++++|.+
T Consensus       188 ----------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          188 ----------------------NREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             ----------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             ----------------------CCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                  3455666666677778888999999888 56778889999999999999999998886


Q ss_pred             hC
Q 008328          317 LG  318 (570)
Q Consensus       317 ~g  318 (570)
                      ..
T Consensus       245 ~~  246 (253)
T 1yyh_A          245 EH  246 (253)
T ss_dssp             --
T ss_pred             Hh
Confidence            54

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.9e-42  Score=351.43  Aligned_cols=271  Identities=17%  Similarity=0.095  Sum_probs=213.0

Q ss_pred             cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328            6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN   85 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d   85 (570)
                      ..+.+.+..|.+|+||||+||..|+.++|++|++. +.+++.+ |..|+||||+|+..|+.++|++|++  .|++++  +
T Consensus         8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~--~   81 (364)
T 3ljn_A            8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLAS--VGEVHS--L   81 (364)
T ss_dssp             --------CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHH--HCCCCC--C
T ss_pred             ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHH--CCCCcc--c
Confidence            34567778888899999999999999999988876 5667766 8889999999999999999999999  677544  4


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHhc----CCCCCC----------------cCCCCCCcHHHHHHHcC--CHHHHHHHhh
Q 008328           86 KVGNTALCFAAVSGVTKIAEVMVNK----NRELPS----------------IRGNKGATPLCMAALLG--HKEMIWYLYS  143 (570)
Q Consensus        86 ~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~g~TpLh~A~~~g--~~~~v~~Ll~  143 (570)
                      .+|.||||+|+..|+.+++++|+++    |.+++.                .+|..|.||||+|+..|  +.+++++|++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            5789999999999999999999988    666541                16778999999999999  8999999999


Q ss_pred             ccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc-----cccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhc
Q 008328          144 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ-----LAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYS  218 (570)
Q Consensus       144 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~  218 (570)
                      +|++++..|..|.||||+|+..|+.+++++|++++++     + +..|..|+||||+|+..|+       .++       
T Consensus       162 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~-------~~~-------  226 (364)
T 3ljn_A          162 LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINW-------EDV-------  226 (364)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTC-------HHH-------
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCC-------HHH-------
Confidence            9999999999999999999999999999999998887     5 5778888888888888874       232       


Q ss_pred             CccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccc----------
Q 008328          219 VPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI----------  288 (570)
Q Consensus       219 ~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~----------  288 (570)
                                          ++.+     +..|++++..|..|.||||+|+..|+.+++++|+++|++..          
T Consensus       227 --------------------v~~L-----l~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  281 (364)
T 3ljn_A          227 --------------------AMRF-----VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT  281 (364)
T ss_dssp             --------------------HHHH-----HTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSS
T ss_pred             --------------------HHHH-----HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcc
Confidence                                3222     23477788888888888888888888888888888876631          


Q ss_pred             -ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          289 -WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       289 -~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                       ...+..++||++.|+..++.+.+..|++.+++..
T Consensus       282 ~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             SBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence             1145677888888888887777777777666543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9.2e-43  Score=355.91  Aligned_cols=258  Identities=15%  Similarity=0.175  Sum_probs=218.3

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcHHHHHHHH--------hcCCCCCCcCCC
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVTKIAEVMV--------NKNRELPSIRGN  120 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~  120 (570)
                      |..|+||||+|+..|+ +++++|+.    .+++.+| ..|+||||+|+..|+.+++++|+        ++|++++ .+|.
T Consensus        91 ~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~d~  164 (373)
T 2fo1_E           91 EPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDC  164 (373)
T ss_dssp             ---CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCT
T ss_pred             CCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CCCC
Confidence            7889999999999665 77777644    5788888 79999999999999998877776        7899988 6899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC---cccccccCCCCCcHHHHHH
Q 008328          121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH---PQLAMARDGNGETALHVLA  197 (570)
Q Consensus       121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~d~~g~tpLh~A~  197 (570)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++   .++ +..|.+|.||||+|+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVA  243 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987   455 688999999999999


Q ss_pred             cCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHH
Q 008328          198 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFL  277 (570)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v  277 (570)
                      ..+..    ...++++.|+..+.++....                        ....+..|..|.||||+|+..|+.+++
T Consensus       244 ~~~~~----~~~~~v~~Ll~~g~~~~~~~------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v  295 (373)
T 2fo1_E          244 HNEGR----DQVASAKLLVEKGAKVDYDG------------------------AARKDSEKYKGRTALHYAAQVSNMPIV  295 (373)
T ss_dssp             HSCST----THHHHHHHHHHHTCCSSCCS------------------------GGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred             HhCCc----chHHHHHHHHHCCCCccccc------------------------ccccCcccccCCCHHHHHHHhCCHHHH
Confidence            87631    13455555554433322110                        112334677899999999999999999


Q ss_pred             HHHHHhC-CcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          278 MVLIQMY-PNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       278 ~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      ++|++++ ++ .+.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|+..++.+.
T Consensus       296 ~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~----~d~~g~t~l~~A~~~g~~~i  361 (373)
T 2fo1_E          296 KYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNI  361 (373)
T ss_dssp             HHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----CCSSSCCHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC----CCCCCCCHHHHHHHcCCHHH
Confidence            9999987 66 788899999999999999999999999999999985    99999999999999998654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.1e-41  Score=347.02  Aligned_cols=255  Identities=15%  Similarity=0.086  Sum_probs=225.1

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |.+|+||||+||..|+.++|++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++..   +..|.||||+|
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L~~A   91 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHLA   91 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHHHHH
Confidence            8889999999999999999999999  899999999999999999999999999999999999643   45899999999


Q ss_pred             HHcCCHHHHHHHhhc----cCCccc-----------------cccchhhHHHHHHHhC--cHHHHHHHHhhCcccccccC
Q 008328          130 ALLGHKEMIWYLYSV----TKEEDL-----------------KEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMARD  186 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~----g~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d  186 (570)
                      +..|+.+++++|+++    |++++.                 .+..|.||||+|+..|  +.+++++|+++|+++ +.+|
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d  170 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKD  170 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccC
Confidence            999999999999999    777777                 8889999999999999  999999999999998 6899


Q ss_pred             CCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHH
Q 008328          187 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLF  266 (570)
Q Consensus       187 ~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh  266 (570)
                      ..|+||||+|+..|+       .++++.|                           ++......+.+++..|..|.||||
T Consensus       171 ~~g~t~L~~A~~~g~-------~~~v~~L---------------------------l~~g~~~~~~~~~~~~~~g~t~L~  216 (364)
T 3ljn_A          171 KADETPLMRAMEFRN-------REALDLM---------------------------MDTVPSKSSLRLDYANKQGNSHLH  216 (364)
T ss_dssp             TTSCCHHHHHHHTTC-------HHHHHHH---------------------------HHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred             CCCCCHHHHHHHcCC-------HHHHHHH---------------------------HhcccccccccccccCCCCCcHHH
Confidence            999999999999985       4444444                           333222234448899999999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhh--------hhcccCCCcHHHH
Q 008328          267 TAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIA--------SYKDENNNNMLHL  338 (570)
Q Consensus       267 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~--------n~~d~~G~TpLh~  338 (570)
                      +|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++...        ...+..|+|||+.
T Consensus       217 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  295 (364)
T 3ljn_A          217 WAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP  295 (364)
T ss_dssp             HHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh
Confidence            99999999999999999999 67889999999999999999999999999999876411        0157788999999


Q ss_pred             hhhhCCC
Q 008328          339 AGKLAPP  345 (570)
Q Consensus       339 A~~~~~~  345 (570)
                      |+..++.
T Consensus       296 aa~~~~~  302 (364)
T 3ljn_A          296 AAADPSK  302 (364)
T ss_dssp             SSCCHHH
T ss_pred             hhhccCH
Confidence            8877654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.8e-40  Score=314.20  Aligned_cols=228  Identities=18%  Similarity=0.143  Sum_probs=200.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      +..+.||||.||+.|+.+.++++++..+..++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~   79 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHI   79 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHH--hCCCCCCcCCCCCCHHHH
Confidence            4568899999999999999999999877766666 8899999999999999999999999  799999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328           95 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus        95 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      |+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999999999999987 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccch
Q 008328          175 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  254 (570)
Q Consensus       175 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~  254 (570)
                      +++++++ +.+|.                                                                   
T Consensus       159 l~~g~~~-~~~~~-------------------------------------------------------------------  170 (231)
T 3aji_A          159 LFYKAST-NIQDT-------------------------------------------------------------------  170 (231)
T ss_dssp             HHTTCCS-CCCCT-------------------------------------------------------------------
T ss_pred             HhcCCCc-cccCC-------------------------------------------------------------------
Confidence            9887765 33444                                                                   


Q ss_pred             hhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCch
Q 008328          255 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  320 (570)
Q Consensus       255 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~  320 (570)
                           .|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+..++.+++++|.++|++
T Consensus       171 -----~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          171 -----EGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             -----TSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             -----CCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence                 455666666666778899999999998 567799999999999999999999999988765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.5e-41  Score=320.19  Aligned_cols=230  Identities=18%  Similarity=0.180  Sum_probs=161.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHh---cCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328           12 ERNCFTSYAPLHLAALKGDWDFARNFFN---LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG   88 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g   88 (570)
                      +.+|.+|+||||+||+.|+.+++++|++   ..+.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCC
Confidence            4567777777777777777777777775   245555555 6777777777777777777777777  677777777777


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCC----CCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc-cchhhHHHHHH
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKNR----ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVI  163 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~  163 (570)
                      .||||+|+..|+.+++++|+++++    +++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence            777777777777777777777776    444 466777777777777777777777777777776666 56666666666


Q ss_pred             HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHH
Q 008328          164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW  243 (570)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~  243 (570)
                      ..|+.+++++|+++|+++                                                              
T Consensus       159 ~~~~~~~v~~Ll~~g~~~--------------------------------------------------------------  176 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANV--------------------------------------------------------------  176 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCT--------------------------------------------------------------
T ss_pred             HcCCHHHHHHHHHcCCCC--------------------------------------------------------------
Confidence            666666666666665544                                                              


Q ss_pred             HHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCc
Q 008328          244 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGA  319 (570)
Q Consensus       244 ~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~  319 (570)
                                 +..|..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+..|+.++++.|.+.++
T Consensus       177 -----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          177 -----------NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             -----------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             -----------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence                       33344566666667777778888888888888 56778888888888888888888888887654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.9e-41  Score=325.83  Aligned_cols=206  Identities=17%  Similarity=0.148  Sum_probs=151.5

Q ss_pred             CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC
Q 008328           99 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  178 (570)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  178 (570)
                      ++.+++++|+++|++++...|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++
T Consensus        34 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           34 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             ------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             CChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            36777777777777776556777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhc
Q 008328          179 PQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL  258 (570)
Q Consensus       179 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d  258 (570)
                      +...+.+|.+|.||||+|+..++       .++++.|                           +     ..+.+++..|
T Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~L---------------------------l-----~~g~~~~~~d  154 (253)
T 1yyh_A          114 ATDLDARMHDGTTPLILAARLAV-------EGMLEDL---------------------------I-----NSHADVNAVD  154 (253)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTC-------SSHHHHH---------------------------H-----HTTCCTTCBC
T ss_pred             CCCccccCCCCCcHHHHHHHcCh-------HHHHHHH---------------------------H-----HcCCCCCCcC
Confidence            64446777778888888777664       2222222                           2     2366777778


Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHH
Q 008328          259 RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHL  338 (570)
Q Consensus       259 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~  338 (570)
                      ..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----~d~~g~tpl~~  229 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI----TDHMDRLPRDI  229 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----cccCCCCHHHH
Confidence            8899999999999999999999999999 677899999999999999999999999999999985    99999999999


Q ss_pred             hhhhCCCCcc
Q 008328          339 AGKLAPPDRL  348 (570)
Q Consensus       339 A~~~~~~~~~  348 (570)
                      |++.|+.+.+
T Consensus       230 A~~~g~~~i~  239 (253)
T 1yyh_A          230 AQERMHHDIV  239 (253)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            9999987643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1e-40  Score=327.10  Aligned_cols=253  Identities=15%  Similarity=0.068  Sum_probs=154.8

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCcc--chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328           11 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPE--AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG   88 (570)
Q Consensus        11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~--~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g   88 (570)
                      ++..|.+|+||||+||+.|+.+++++|++.+..  .++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g   78 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYA--AGAGVLVAERGG   78 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTS
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCC
Confidence            356677777777777777777777777765322  24444 6777777777777777777777777  677777777777


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCC------------cCCCCCCcHHHHHHHcCCH-HHHHHHhhccCCccccccch
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKNRELPS------------IRGNKGATPLCMAALLGHK-EMIWYLYSVTKEEDLKEEDR  155 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g  155 (570)
                      .||||+|+..|+.+++++|++++++...            .....+.+|++.++..+.. .....+...+.+++..+..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            7777777777777777777777765331            1122334444444433322 22233333444444444444


Q ss_pred             hhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHH
Q 008328          156 IELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA  235 (570)
Q Consensus       156 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~  235 (570)
                      .||||+|+..|+.+++++|+++|                                                         
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g---------------------------------------------------------  181 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAG---------------------------------------------------------  181 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHT---------------------------------------------------------
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcC---------------------------------------------------------
Confidence            44444444444444444444444                                                         


Q ss_pred             HHHHHHHHHHHHhcCccchhhhcc-CCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHH
Q 008328          236 LELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLI  314 (570)
Q Consensus       236 ~~~~~~l~~~~l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  314 (570)
                                      ++++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|
T Consensus       182 ----------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~L  244 (282)
T 1oy3_D          182 ----------------ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLL  244 (282)
T ss_dssp             ----------------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred             ----------------CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHH
Confidence                            44444443 377888888888999999999999999 677899999999999999999999999


Q ss_pred             HHhCchhhhhhhhcccCCCcHHHHhhhhCC
Q 008328          315 YELGAHKDLIASYKDENNNNMLHLAGKLAP  344 (570)
Q Consensus       315 l~~g~~~~~~~n~~d~~G~TpLh~A~~~~~  344 (570)
                      +++|++++.    +|.+|.|||++|....+
T Consensus       245 l~~ga~~~~----~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          245 RAHGAPEPE----DGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHTTCCCCC----CC---------------
T ss_pred             HHcCCCcCc----CCCcccccccccCCccc
Confidence            999999984    99999999999987654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.2e-39  Score=309.29  Aligned_cols=229  Identities=17%  Similarity=0.170  Sum_probs=181.8

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328            9 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG   88 (570)
Q Consensus         9 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g   88 (570)
                      .+++.+|.+|+||||+||..|+.+++++|++. +.+++.. +..|+||||+|+..|+.+++++|++  .|++++.+|..|
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g   77 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTC-SEDQRTPLMEAAENNHLEAVKYLIK--AGALVDPKDAEG   77 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHT--TTCCCCCCCTTS
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHh--CCCCCCCCCCCC
Confidence            46778888889999999999999988888875 4556665 7888899999999999999999988  788888888888


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcC-CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  167 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  167 (570)
                      .||||+|+..|+.+++++|++++ .+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  156 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC  156 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence            99999999999999999999888 4444 688888899999998888899998888888888888888888888888888


Q ss_pred             HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHH
Q 008328          168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  247 (570)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l  247 (570)
                      .+++++|++.++++ +.+|..                                                           
T Consensus       157 ~~~~~~Ll~~g~~~-~~~~~~-----------------------------------------------------------  176 (237)
T 3b7b_A          157 VDIAEILLAAKCDL-HAVNIH-----------------------------------------------------------  176 (237)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTT-----------------------------------------------------------
T ss_pred             HHHHHHHHHcCCCC-CCcCCC-----------------------------------------------------------
Confidence            88888888777665 344444                                                           


Q ss_pred             hcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          248 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       248 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                                   |.||||+|+..|+.+++++|+++|++ .+.+|.+|+||||+|+.+++.+.+..+++
T Consensus       177 -------------g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          177 -------------GDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             -------------CCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             -------------CCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                         44555555556667777778877777 55667788888888888777765555544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-40  Score=326.43  Aligned_cols=261  Identities=17%  Similarity=0.136  Sum_probs=183.9

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL  126 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpL  126 (570)
                      |.+|+||||+|++.|+.+++++|++  .+++   ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL   82 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTAL   82 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHH
Confidence            8899999999999999999999999  6776   88999999999999999999999999999999987 6899999999


Q ss_pred             HHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccC
Q 008328          127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASG  206 (570)
Q Consensus       127 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~  206 (570)
                      |+|+..|+.+++++|+++|++........                  ++....   ......+.++++.++..+..    
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~----  137 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDT------------------YLTQSQ---DCTPDTSHAPAAVDSQPNPE----  137 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHH------------------Hhhccc---ccCcchhcchhhhccccccc----
Confidence            99999999999999999998755432211                  111111   12345567777776654421    


Q ss_pred             CchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCc
Q 008328          207 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN  286 (570)
Q Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  286 (570)
                                                        ......+...+.+++..|..|.||||+|+..|+.+++++|+++|++
T Consensus       138 ----------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  183 (282)
T 1oy3_D          138 ----------------------------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD  183 (282)
T ss_dssp             ----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ----------------------------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                              1111223344778889999999999999999999999999999999


Q ss_pred             ccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc--ccCCchhhhhhHhhhh
Q 008328          287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL--KIDSGAALQLRRELHW  364 (570)
Q Consensus       287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~~~~~~l~~  364 (570)
                      +....+..|+||||+|+.+|+.+++++|+++|++++.    +|..|+||||+|++.++.+.+  ++..|           
T Consensus       184 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----------  248 (282)
T 1oy3_D          184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA----RMYGGRTPLGSALLRPNPILARLLRAHG-----------  248 (282)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHTSSCHHHHHHHHHTT-----------
T ss_pred             CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc----cccCCCCHHHHHHHcCCcHHHHHHHHcC-----------
Confidence            5444334599999999999999999999999999985    999999999999999876532  22233           


Q ss_pred             HHHhhhhcCchhhhhhccCCCCcchhhhhhhhh
Q 008328          365 FKEIEKVVQPSYREAKNSEGRTPHILFSEEHRR  397 (570)
Q Consensus       365 ~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~~~~~  397 (570)
                                ++++.+|.+|+||+++|......
T Consensus       249 ----------a~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          249 ----------APEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             ----------CCCCCCC----------------
T ss_pred             ----------CCcCcCCCcccccccccCCcccc
Confidence                      44588999999999999876543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-41  Score=330.43  Aligned_cols=264  Identities=16%  Similarity=0.120  Sum_probs=217.1

Q ss_pred             HHHHcCCHHHHHHHHhcCccch-------hhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           24 LAALKGDWDFARNFFNLNPEAV-------CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        24 ~Aa~~g~~~~v~~ll~~~~~~~-------~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                      .+++.|+.+.++.++.......       ....+..|.||||.||..|+.+++++|++  .|++++.+|.+|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHH
Confidence            5778888888888887543211       11123467899999999999999999999  79999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHh
Q 008328           97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  176 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  176 (570)
                      ..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+.+|.||||+|+..++.++++.++.
T Consensus        82 ~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           82 IDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            9999999999999999987 689999999999999999999999999999999999999999999999999999998886


Q ss_pred             hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhh
Q 008328          177 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE  256 (570)
Q Consensus       177 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~  256 (570)
                      ......+..+..+.++++..                                          ..    ..+.........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~------------------------------------------~~----~~l~~~~~~~~~  194 (299)
T 1s70_B          161 RQGVDIEAARKEEERIMLRD------------------------------------------AR----QWLNSGHINDVR  194 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHHHH------------------------------------------HH----HHHHHTCCCCCC
T ss_pred             hcCCCchhhhhhhhhHHHHH------------------------------------------HH----HHHhccCcchhh
Confidence            53322222222222221111                                          11    122223344445


Q ss_pred             hccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHH
Q 008328          257 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML  336 (570)
Q Consensus       257 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpL  336 (570)
                      .+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.    +|..|+|||
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l  269 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAF  269 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC----cCCCCCCHH
Confidence            667899999999999999999999999999 677899999999999999999999999999999985    999999999


Q ss_pred             HHhhh
Q 008328          337 HLAGK  341 (570)
Q Consensus       337 h~A~~  341 (570)
                      |+|++
T Consensus       270 ~~A~~  274 (299)
T 1s70_B          270 DVADE  274 (299)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            99965

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.3e-39  Score=308.10  Aligned_cols=215  Identities=19%  Similarity=0.188  Sum_probs=172.1

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |.+|+||||+|+..|+.+++++|++  .|++++..|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   84 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLA   84 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHH--cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHH
Confidence            6777777777777777777777777  677777777777777777777777777777777777766 5677777777777


Q ss_pred             HHcCCHHHHHHHhhcc-CCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCc
Q 008328          130 ALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQ  208 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~  208 (570)
                      +..|+.+++++|+++| .+++..+..|.||||.|+..++.+++++|+++|+++                           
T Consensus        85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---------------------------  137 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI---------------------------  137 (237)
T ss_dssp             HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---------------------------
T ss_pred             HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---------------------------
Confidence            7777777777777777 667777777777777777777777777777666544                           


Q ss_pred             hhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccc
Q 008328          209 LGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI  288 (570)
Q Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  288 (570)
                                                                    +..|..|.||||+|+..|+.+++++|+++|++ .
T Consensus       138 ----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~  170 (237)
T 3b7b_A          138 ----------------------------------------------NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-L  170 (237)
T ss_dssp             ----------------------------------------------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-T
T ss_pred             ----------------------------------------------CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-C
Confidence                                                          33344566777778888889999999999999 6


Q ss_pred             ccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCC
Q 008328          289 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP  345 (570)
Q Consensus       289 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~  345 (570)
                      +.+|..|+||||+|+..++.+++++|+++|++++.    +|.+|+||||+|+..++.
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL----KNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTSCCHHHHSCTTCHH
T ss_pred             CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----cCCCCCCHHHHHHHHHHH
Confidence            67799999999999999999999999999999985    999999999999998753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.9e-39  Score=310.48  Aligned_cols=221  Identities=20%  Similarity=0.226  Sum_probs=192.5

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHc--cCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC  127 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~--~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh  127 (570)
                      |.+|+||||+|++.|+.+++++|++.  ..+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~   84 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAH   84 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence            88999999999999999999999862  1578999999999999999999999999999999999987 68899999999


Q ss_pred             HHHHcCCHHHHHHHhhccC----CccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCcc
Q 008328          128 MAALLGHKEMIWYLYSVTK----EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF  203 (570)
Q Consensus       128 ~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~  203 (570)
                      +|+..|+.+++++|+++++    +++..+..|.||||.|+..|+.+++++|++.++++. ..+                 
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~-----------------  146 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVD-----------------  146 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCC-----------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccc-----------------
Confidence            9999999999999999987    778888888888888888888888888888876652 222                 


Q ss_pred             ccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHh
Q 008328          204 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM  283 (570)
Q Consensus       204 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  283 (570)
                                                                            +..|.||||+|+..|+.+++++|+++
T Consensus       147 ------------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (241)
T 1k1a_A          147 ------------------------------------------------------IKSGRSPLIHAVENNSLSMVQLLLQH  172 (241)
T ss_dssp             ------------------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ------------------------------------------------------ccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence                                                                  02466777777778889999999999


Q ss_pred             CCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc
Q 008328          284 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL  348 (570)
Q Consensus       284 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~  348 (570)
                      |++ .+.+|..|+||||+|+..|+.+++++|+++|++++.    +|..|+||||+|+..++.+.+
T Consensus       173 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          173 GAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----cCCCCCCHHHHHHhcCcHHHH
Confidence            999 677799999999999999999999999999999985    999999999999998766543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-40  Score=319.62  Aligned_cols=231  Identities=16%  Similarity=0.192  Sum_probs=146.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccc-------hhhccCCCCCcHHHHHHhcCCH-HHHHHHHHccCcccccc
Q 008328           12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEA-------VCVRISRNQDTALHIAAGARRT-LFVQELVNLMTPEDLAL   83 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~-------~~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~   83 (570)
                      ..+|..+.+||+.||+.|+.++|++||+....+       ++.. +..|.||||.|+..++. +++++|++  .|+++|.
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~--~Gadvn~   81 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPA--SGLGVNV   81 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTTC
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHH--CCCCCCC
Confidence            456777888888888888888888888764332       2223 56777888888877665 36777777  7788888


Q ss_pred             cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH
Q 008328           84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI  163 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  163 (570)
                      +|.+|+||||+|+..|+.+++++|+++|++++ .++..|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus        82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~  160 (269)
T 4b93_B           82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC  160 (269)
T ss_dssp             CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            88888888888888888888888888888776 57777888888888888888888888888877777777777777777


Q ss_pred             HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHH
Q 008328          164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW  243 (570)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~  243 (570)
                      ..|+.+++++|+++|+++                                                              
T Consensus       161 ~~g~~~~v~~Ll~~gadv--------------------------------------------------------------  178 (269)
T 4b93_B          161 SGGHHELVALLLQHGASI--------------------------------------------------------------  178 (269)
T ss_dssp             HTTCGGGHHHHHHTTCCT--------------------------------------------------------------
T ss_pred             HCCCHHHHHHHHHCCCCC--------------------------------------------------------------
Confidence            777777777777666554                                                              


Q ss_pred             HHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCc-hHHHHHHHHhCch
Q 008328          244 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ-EKIFNLIYELGAH  320 (570)
Q Consensus       244 ~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv~~Ll~~g~~  320 (570)
                                 +..|..|.||||+|+..|+.++|++|+++|++ ++.+|.+|+||||+|+++++ .++++.|.+.++.
T Consensus       179 -----------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          179 -----------NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             -----------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             -----------CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence                       33344566666677777788999999999999 67789999999999988775 3444444554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=302.01  Aligned_cols=231  Identities=19%  Similarity=0.165  Sum_probs=188.0

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |..|.||||.|++.|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            6778888888888888888888888  77888888888888888888888888888888888887766666788888888


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      +..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++++++ +.+|.+|.||||+|+..++      ..
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~------~~  156 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH------SV  156 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC------SS
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC------hH
Confidence            8888888888888888888888888888888888888888888888888876 5778888888888886553      12


Q ss_pred             hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhcc-CCChHHHHHHHcCcHHHHHHHHHhCCccc
Q 008328          210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLI  288 (570)
Q Consensus       210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  288 (570)
                      ++++.                                +...+.+++..+. .|.||||+|+..|+.+++++|+++|++ .
T Consensus       157 ~~~~~--------------------------------L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~  203 (240)
T 3eu9_A          157 DPTRL--------------------------------LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-V  203 (240)
T ss_dssp             TTHHH--------------------------------HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-T
T ss_pred             HHHHH--------------------------------HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence            22222                                2234677777776 799999999999999999999999999 6


Q ss_pred             ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          289 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       289 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                      +.+|..|+||||+|++.|+.+++++|++.+++..
T Consensus       204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            7889999999999999999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=316.50  Aligned_cols=214  Identities=17%  Similarity=0.209  Sum_probs=160.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCccc--------ccccccCCChHHHHHHHcCcH-HHHHHHHhcCCCCCCcCCC
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPED--------LALRNKVGNTALCFAAVSGVT-KIAEVMVNKNRELPSIRGN  120 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~--------~~~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~  120 (570)
                      |.++.+|||.||+.|+.++|++|++  .+++        ++..|..|.||||.|+..++. ++++.|+++|++++ .+|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCTT-CCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCC
Confidence            7778899999999999999999998  5543        566788899999999988775 47899999999987 6899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328          121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      +|+||||+|+..|+.+++++|++.|++++..+.+|.||+|.|+..++.++++.|++.|+++ +.+|.+            
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~------------  151 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLS------------  151 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCC------------
Confidence            9999999999999999999999999999999999999999999999999888888887765 344444            


Q ss_pred             CccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHH
Q 008328          201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL  280 (570)
Q Consensus       201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  280 (570)
                                                                                  |.||||+|+..|+.+++++|
T Consensus       152 ------------------------------------------------------------g~TpL~~A~~~g~~~~v~~L  171 (269)
T 4b93_B          152 ------------------------------------------------------------GNTPLIYACSGGHHELVALL  171 (269)
T ss_dssp             ------------------------------------------------------------CCCHHHHHHHTTCGGGHHHH
T ss_pred             ------------------------------------------------------------CCCHHHHHHHCCCHHHHHHH
Confidence                                                                        55555666666778899999


Q ss_pred             HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCC
Q 008328          281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP  344 (570)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~  344 (570)
                      +++|++ ++.+|..|+||||+|+.+|+.++|++|+++|+|++.    +|.+|+||||+|+++++
T Consensus       172 l~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          172 LQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----LNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCSGGGSCTTCH
T ss_pred             HHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHhCCc
Confidence            999999 677899999999999999999999999999999985    99999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.1e-38  Score=299.41  Aligned_cols=218  Identities=16%  Similarity=0.170  Sum_probs=162.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCc--ccccc-cccCCChHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP--EDLAL-RNKVGNTALCF   94 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~-~d~~g~TpLh~   94 (570)
                      |+||||.||+.|+.++++.|++.++...+.+ |..|+||||+|+..|+.+++++|++  .+  .+++. .|..|.||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCCGGGCCCTTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHh--ccccccccccCCCCCCCHHHH
Confidence            6788888888888888888888766554444 7888888888888888888888888  56  55555 77888888888


Q ss_pred             HHHcCcHHHHHHHHhcC--CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHH
Q 008328           95 AAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL  172 (570)
Q Consensus        95 A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  172 (570)
                      |+..|+.+++++|+++|  ++++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            88888888888888887  6665 57788888888888888888888888888888877777777777777777777777


Q ss_pred             HHHhhC-cccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCc
Q 008328          173 DLIQHH-PQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDD  251 (570)
Q Consensus       173 ~Ll~~~-~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~  251 (570)
                      +|++.+ .++ +.+|                                                                 
T Consensus       158 ~Ll~~g~~~~-~~~d-----------------------------------------------------------------  171 (228)
T 2dzn_A          158 LLCGLGKSAV-NWQD-----------------------------------------------------------------  171 (228)
T ss_dssp             HHHTTTCCCS-CCCC-----------------------------------------------------------------
T ss_pred             HHHhcCcccc-cCcC-----------------------------------------------------------------
Confidence            777766 332 2333                                                                 


Q ss_pred             cchhhhccCCChHHHHHHHcCcHHHHHHHH-HhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          252 SKIGELLRKPSRLLFTAVELGNVEFLMVLI-QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       252 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                             ..|.||||+|+..|+.+++++|+ +.|++ .+.+|.+|+||||+|+..   +++++|++
T Consensus       172 -------~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          172 -------KQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             -------TTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             -------CCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence                   33445555555556677777777 67777 556677777888777543   45555554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.3e-38  Score=312.76  Aligned_cols=240  Identities=13%  Similarity=0.062  Sum_probs=208.9

Q ss_pred             HHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHH
Q 008328           26 ALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE  105 (570)
Q Consensus        26 a~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~  105 (570)
                      +...+.+.+..+|...  +++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|  |.||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~--g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTGGGSCCT--TCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCC--CCCHHHHHHHcCCHHHHH
Confidence            3456666666777654  46666 8999999999999999999999999  899999884  999999999999999999


Q ss_pred             HHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccch-hhHHHHHHHhCcHHHHHHHHhhCcccccc
Q 008328          106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-IELLVAVIDAGLYDVALDLIQHHPQLAMA  184 (570)
Q Consensus       106 ~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  184 (570)
                      +|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|++++++..  
T Consensus        80 ~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--  156 (285)
T 3kea_A           80 ILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--  156 (285)
T ss_dssp             HHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--
T ss_pred             HHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--
Confidence            9999999988 689999999999999999999999999999999999999 899999999999999999999998762  


Q ss_pred             cCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChH
Q 008328          185 RDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRL  264 (570)
Q Consensus       185 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tp  264 (570)
                      ....|+||||+|+..|+       .                           +.++.+++.     |++++.+|..|.||
T Consensus       157 ~~~~g~t~L~~A~~~g~-------~---------------------------~~v~~Ll~~-----gad~n~~~~~g~t~  197 (285)
T 3kea_A          157 DLAILLSCIHITIKNGH-------V---------------------------DMMILLLDY-----MTSTNTNNSLLFIP  197 (285)
T ss_dssp             CCSTHHHHHHHHHHTTC-------H---------------------------HHHHHHHHH-----HHHTCTTCCCBCCT
T ss_pred             cccCCccHHHHHHHcCh-------H---------------------------HHHHHHHHc-----CCCCCcccCCCCCh
Confidence            12389999999999885       2                           344444433     78899999999998


Q ss_pred             -HHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          265 -LFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       265 -Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                       ||+|+..|+.+++++|+++|++ ++..|       +.|+..|+.+++++|+++|++++
T Consensus       198 ~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          198 DIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             THHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence             9999999999999999999999 44545       36688999999999999999876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.4e-38  Score=302.40  Aligned_cols=216  Identities=15%  Similarity=0.137  Sum_probs=190.3

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      +..++||||.|++.|+.+.++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHH
Confidence            45688999999999999999999985 556688889999999999999999999999999999887 6889999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      +..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++++.++ +.+                        
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~------------------------  135 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAK------------------------  135 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC------------------------
T ss_pred             HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCc------------------------
Confidence            9999999999999999999988888899999999888888888888876654 222                        


Q ss_pred             hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328          210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  289 (570)
Q Consensus       210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  289 (570)
                                                                      |..|.||||+|+..|+.+++++|+++|++ .+
T Consensus       136 ------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~  166 (231)
T 3aji_A          136 ------------------------------------------------DHYDATAMHRAAAKGNLKMVHILLFYKAS-TN  166 (231)
T ss_dssp             ------------------------------------------------CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SC
T ss_pred             ------------------------------------------------CCCCCcHHHHHHHcCCHHHHHHHHhcCCC-cc
Confidence                                                            33466777777788889999999999999 66


Q ss_pred             cccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCC
Q 008328          290 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP  345 (570)
Q Consensus       290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~  345 (570)
                      .+|..|+||||+|+..++.+++++|+++|++++.    +|..|+||||+|++.++.
T Consensus       167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~  218 (231)
T 3aji_A          167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI----ENKEEKTPLQVAKGGLGL  218 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHSCHHHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhhHHH
Confidence            7799999999999999999999999999999985    999999999999887654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.4e-38  Score=297.74  Aligned_cols=211  Identities=18%  Similarity=0.244  Sum_probs=176.8

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccc-cccccCCChHHHHHHHcCcHHHHHHHHhcC--CCCCCcCCCCCCcHHHHH
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDL-ALRNKVGNTALCFAAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMA  129 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~TpLh~A  129 (570)
                      |+||||+|++.|+.++++.|++  .+.++ +.+|..|.||||+|+..|+.+++++|+++|  .++....+..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHH--HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHh--cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            7899999999999999999998  45554 458889999999999999999999999998  555533788899999999


Q ss_pred             HHcCCHHHHHHHhhcc--CCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCC
Q 008328          130 ALLGHKEMIWYLYSVT--KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS  207 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~  207 (570)
                      +..|+.+++++|+++|  ++++..+..|.||||.|+..|+.+++++|+++|+++ +.+|                     
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~---------------------  137 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKD---------------------  137 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCC---------------------
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccC---------------------
Confidence            9999999999999988  777888888888888888888888888888776665 2333                     


Q ss_pred             chhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcc
Q 008328          208 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL  287 (570)
Q Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  287 (570)
                                                                         ..|.||||+|+..|+.+++++|++.|+..
T Consensus       138 ---------------------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  166 (228)
T 2dzn_A          138 ---------------------------------------------------KFNQIPLHRAASVGSLKLIELLCGLGKSA  166 (228)
T ss_dssp             ---------------------------------------------------TTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             ---------------------------------------------------CCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence                                                               34566666677777889999999999333


Q ss_pred             cccccCCCCchhHHHHHhCchHHHHHHH-HhCchhhhhhhhcccCCCcHHHHhhhh
Q 008328          288 IWKVDDHSRSMFHIAVVHRQEKIFNLIY-ELGAHKDLIASYKDENNNNMLHLAGKL  342 (570)
Q Consensus       288 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~n~~d~~G~TpLh~A~~~  342 (570)
                      .+.+|..|+||||+|+..++.+++++|+ +.|++++.    +|.+|+||||+|++.
T Consensus       167 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~----~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALNE  218 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----BCTTSCBGGGGCSST
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc----cCCCCCcHHHHHHHH
Confidence            7788999999999999999999999999 89999985    999999999999764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-37  Score=293.01  Aligned_cols=217  Identities=20%  Similarity=0.229  Sum_probs=178.6

Q ss_pred             CCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHH
Q 008328           29 GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV  108 (570)
Q Consensus        29 g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  108 (570)
                      |+.+++++|++.+ .+++...|.+|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcC-CCcccccCCCCCchHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6677788777764 44544447889999999999999999999998  78999999999999999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCC
Q 008328          109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGN  188 (570)
Q Consensus       109 ~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~  188 (570)
                      ++++.....++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++ +.+|  
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~--  155 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQN--  155 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC--
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcC--
Confidence            9988444468889999999999999999999999999998888888888888888888888888888877665 2333  


Q ss_pred             CCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHH
Q 008328          189 GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTA  268 (570)
Q Consensus       189 g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A  268 (570)
                                                                                            ..|.||||+|
T Consensus       156 ----------------------------------------------------------------------~~g~t~L~~A  165 (223)
T 2f8y_A          156 ----------------------------------------------------------------------NREETPLFLA  165 (223)
T ss_dssp             ----------------------------------------------------------------------TTCCCHHHHH
T ss_pred             ----------------------------------------------------------------------CCCcCHHHHH
Confidence                                                                                  3455666667


Q ss_pred             HHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          269 VELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       269 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                      +..|+.+++++|+++|++ .+.+|..|+||||+|+.+++.+++++|+++|+...
T Consensus       166 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          166 AREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            777788999999999998 56778999999999999999999999999988653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-39  Score=320.92  Aligned_cols=281  Identities=11%  Similarity=0.076  Sum_probs=193.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc--------------
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL--------------   83 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~--------------   83 (570)
                      +.+|+|    ....+++++|+++ +.+++.. |..|.|++|     |+.++++.|++  .|++++.              
T Consensus        23 ~~~~~~----~~~~dlv~~ll~~-ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~--~g~~~~~~~~~~a~~~~~~~~   89 (327)
T 1sw6_A           23 TAGPII----TFTHDLTSDFLSS-PLKIMKA-LPSPVVNDN-----EQKMKLEAFLQ--RLLFPEIQEMPTSLNNDSSNR   89 (327)
T ss_dssp             --CCEE----ECCTTCCCSTTTS-SCCCEEC-BCCCCCCCH-----HHHHHHHHHHH--HHHC-----------------
T ss_pred             cccchh----hhcCchHHHHhhC-CcccccC-CCCCCcccC-----chhHHHHHHHH--hccCCccccchHhhhcccccc
Confidence            445555    4556677776654 6667666 788888877     88888888888  6776554              


Q ss_pred             ---cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHH
Q 008328           84 ---RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV  160 (570)
Q Consensus        84 ---~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  160 (570)
                         +.....+.+|.|+..+..+++++|++.|++++..+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh  169 (327)
T 1sw6_A           90 NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLV  169 (327)
T ss_dssp             --------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHH
T ss_pred             cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence               11112233577888888888899999888887337888999999999999999999999999999999999999999


Q ss_pred             HHHHhCc---HHHHHHHHhhCcccccccCCCCCcHHHHHHc----CCCccccCCchhhhhhhhhcCccchhccchhhhHH
Q 008328          161 AVIDAGL---YDVALDLIQHHPQLAMARDGNGETALHVLAR----KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHL  233 (570)
Q Consensus       161 ~A~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~  233 (570)
                      +|+..|+   .++++.|++.+....+.+|.+|+||||+|++    .+       ..++++.++..........+...   
T Consensus       170 ~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~---  239 (327)
T 1sw6_A          170 KAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG-------CSAAAKYYLDILMGWIVKKQNRP---  239 (327)
T ss_dssp             HHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT-------CHHHHHHHHHHHHHHHHHGGGCC---
T ss_pred             HHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc-------cHHHHHHHHHHHHHHHhcccchH---
Confidence            9999888   6788888887744347888999999999987    54       35666666543211100000000   


Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHH
Q 008328          234 QALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNL  313 (570)
Q Consensus       234 ~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~  313 (570)
                               +...+...+++++..+..|.||||.|+.      +++|++++   ++.+|..|+||||+|+.+|+.+++++
T Consensus       240 ---------i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~  301 (327)
T 1sw6_A          240 ---------IQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDA  301 (327)
T ss_dssp             ---------EEEC----------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             ---------HHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence                     0011123388899999999999999996      89999984   55789999999999999999999999


Q ss_pred             HHHhCchhhhhhhhcccCCCcHHHHhhhhC
Q 008328          314 IYELGAHKDLIASYKDENNNNMLHLAGKLA  343 (570)
Q Consensus       314 Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~  343 (570)
                      |+++|++++.    +|.+|+||||+|++.|
T Consensus       302 Ll~~Gad~~~----~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          302 LLDYGADPFI----ANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHTTCCTTC----CCTTSCCGGGGTCC--
T ss_pred             HHHcCCCCcc----cCCCCCCHHHHHHhcC
Confidence            9999999985    9999999999999764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-37  Score=307.56  Aligned_cols=269  Identities=16%  Similarity=0.170  Sum_probs=216.3

Q ss_pred             HHHhcCCHHHHHHHHHccCccccc---------ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           59 IAAGARRTLFVQELVNLMTPEDLA---------LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        59 ~A~~~g~~~~v~~Ll~~~~~~~~~---------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      .+++.++.+.++.++.  ...++.         ..+..|.||||.|+..|+.+++++|+++|++++ ..|..|.||||+|
T Consensus         4 ~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   80 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIG--SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQA   80 (299)
T ss_dssp             HHHHHHHHHHHHHHHH--TTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHH
T ss_pred             hHHHHHHHHHHHHHHc--cccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            5677888888888887  333322         234578899999999999999999999999988 6899999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..++       .
T Consensus        81 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~  152 (299)
T 1s70_B           81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAM-------E  152 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHH-------H
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcch-------H
Confidence            9999999999999999999999999999999999999999999999999998 5899999999999987652       2


Q ss_pred             hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328          210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  289 (570)
Q Consensus       210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  289 (570)
                      ++++.++                               ...+.+++..+..+.++++        +.++.++..+.....
T Consensus       153 ~~~~~ll-------------------------------~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          153 ELLQNEV-------------------------------NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDV  193 (299)
T ss_dssp             HHHHHHH-------------------------------HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCC
T ss_pred             HHHHHHH-------------------------------hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchh
Confidence            2222222                               2224444444444444443        345567777777667


Q ss_pred             cccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhh
Q 008328          290 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIE  369 (570)
Q Consensus       290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~  369 (570)
                      ..+..|.||||+|+.+|+.+++++|++.|++++.    +|.+|+||||+|++.|+.+.+.                    
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~----~d~~g~tpL~~A~~~~~~~~v~--------------------  249 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----KDYDGWTPLHAAAHWGKEEACR--------------------  249 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----CCTTCCCHHHHHHHTTCHHHHH--------------------
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC----cCCCCCcHHHHHHhcCCHHHHH--------------------
Confidence            7789999999999999999999999999999985    9999999999999998865322                    


Q ss_pred             hhcC-chhhhhhccCCCCcchhhhhhhhhhhhh
Q 008328          370 KVVQ-PSYREAKNSEGRTPHILFSEEHRRLVRE  401 (570)
Q Consensus       370 ~~~~-~~~~~~~n~~G~Tpl~~a~~~~~~~~~~  401 (570)
                      .++. ..+.+.+|..|+||+++|.++..+.+++
T Consensus       250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~  282 (299)
T 1s70_B          250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEE  282 (299)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            2222 1455889999999999998876554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=289.03  Aligned_cols=231  Identities=17%  Similarity=0.143  Sum_probs=205.8

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCC
Q 008328           11 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGN   89 (570)
Q Consensus        11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~   89 (570)
                      ++..|..|.||||.|++.|+.+++++|++. +.+++.+ +..|.||||+|+..|+.+++++|++  .+.+++..+ ..|.
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~   77 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQP-DKENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNS   77 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCBTTTTB
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHH--cCCcchhhcCCcCC
Confidence            566788999999999999999999999986 4667666 8999999999999999999999999  788887555 4599


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc-H
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL-Y  168 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~  168 (570)
                      ||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++ .
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  156 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV  156 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence            99999999999999999999999987 689999999999999999999999999999999999999999999997766 8


Q ss_pred             HHHHHHHhhCcccccccCC-CCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHH
Q 008328          169 DVALDLIQHHPQLAMARDG-NGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL  247 (570)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l  247 (570)
                      +++++|++.++++. ..+. .|.||||+|+..++       .                           +.++.+++.  
T Consensus       157 ~~~~~L~~~~~~~~-~~~~~~g~t~L~~A~~~~~-------~---------------------------~~v~~Ll~~--  199 (240)
T 3eu9_A          157 DPTRLLLTFNVSVN-LGDKYHKNTALHWAVLAGN-------T---------------------------TVISLLLEA--  199 (240)
T ss_dssp             TTHHHHHHTTCCTT-CCCTTTCCCHHHHHHHHTC-------H---------------------------HHHHHHHHH--
T ss_pred             HHHHHHHhcCCCcc-hhhccCCCcHHHHHHHcCC-------H---------------------------HHHHHHHHc--
Confidence            99999999999984 6665 99999999999885       2                           344444433  


Q ss_pred             hcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCc
Q 008328          248 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN  286 (570)
Q Consensus       248 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  286 (570)
                         |++++..|..|.||||+|++.|+.+++++|++++++
T Consensus       200 ---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          200 ---GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             ---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             ---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence               788999999999999999999999999999999887

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.9e-37  Score=299.96  Aligned_cols=224  Identities=17%  Similarity=0.139  Sum_probs=199.0

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328            9 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG   88 (570)
Q Consensus         9 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g   88 (570)
                      .+++.+|.+|+||||+||..|+.++++.|++. +.+++.+   +|+||||+|+..|+.+++++|++  .|++++.+|..|
T Consensus        22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~d~~g   95 (285)
T 3kea_A           22 KDTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLF--SGLDDSQFDDKG   95 (285)
T ss_dssp             TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHHH--TTCCTTCCCTTS
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCC
Confidence            47999999999999999999999999999986 5566654   59999999999999999999999  899999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCC-CcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG-ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  167 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  167 (570)
                      .||||+|+..|+.+++++|+++|++++ .++..| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~  173 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGH  173 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcCh
Confidence            999999999999999999999999987 688888 89999999999999999999999876322 289999999999999


Q ss_pred             HHHHHHHHhhCcccccccCCCCCcH-HHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHH
Q 008328          168 YDVALDLIQHHPQLAMARDGNGETA-LHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV  246 (570)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~d~~g~tp-Lh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~  246 (570)
                      .+++++|+++|+++ +.+|..|+|| ||+|+..++       .++++.|                               
T Consensus       174 ~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~-------~~~v~~L-------------------------------  214 (285)
T 3kea_A          174 VDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKD-------IEMLQAL-------------------------------  214 (285)
T ss_dssp             HHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTC-------HHHHHHH-------------------------------
T ss_pred             HHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCC-------HHHHHHH-------------------------------
Confidence            99999999999998 6899999998 999999884       3444333                               


Q ss_pred             HhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcc
Q 008328          247 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL  287 (570)
Q Consensus       247 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  287 (570)
                       ...|++++..|.       .|+..|+.+++++|+++|++.
T Consensus       215 -l~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          215 -FKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             -TTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             -HHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence             344777777663       567799999999999999883

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4e-37  Score=308.23  Aligned_cols=246  Identities=11%  Similarity=0.042  Sum_probs=195.6

Q ss_pred             eeccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhc----------------cCCCCCcHHHHHHhcCCH
Q 008328            3 LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR----------------ISRNQDTALHIAAGARRT   66 (570)
Q Consensus         3 ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~----------------~~~~g~TpLh~A~~~g~~   66 (570)
                      ++...|++++..|..|.|+++     |+.++++.||+++ .+.+..                ......+.+|.|+..+..
T Consensus        37 ~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  110 (327)
T 1sw6_A           37 DFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRL-LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ  110 (327)
T ss_dssp             STTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHH-HC-------------------------------CHHHHHH
T ss_pred             HHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhc-cCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence            355678999999999999988     9999999999863 222210                011223346889988999


Q ss_pred             HHHHHHHHccCcccccc-cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC---HHHHHHHh
Q 008328           67 LFVQELVNLMTPEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH---KEMIWYLY  142 (570)
Q Consensus        67 ~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll  142 (570)
                      ++++.|++  .|+++|. +|.+|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+   .++++.|+
T Consensus       111 ~~~~~l~~--~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll  187 (327)
T 1sw6_A          111 EVNDAFPN--TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALL  187 (327)
T ss_dssp             HHHHHCTT--SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHHHHHh--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHH
Confidence            99999999  8999999 89999999999999999999999999999998 799999999999999998   78889999


Q ss_pred             hcc-CCccccccchhhHHHHHHH----hCcHHHHHHHHhh--------------------CcccccccCCCCCcHHHHHH
Q 008328          143 SVT-KEEDLKEEDRIELLVAVID----AGLYDVALDLIQH--------------------HPQLAMARDGNGETALHVLA  197 (570)
Q Consensus       143 ~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~--------------------~~~~~~~~d~~g~tpLh~A~  197 (570)
                      +.+ ++++.++..|.||||+|+.    .|+.++++.|++.                    ++++ +.+|.+|+||||.|+
T Consensus       188 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~  266 (327)
T 1sw6_A          188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENL  266 (327)
T ss_dssp             HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHC
T ss_pred             HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHH
Confidence            887 7899999999999999999    8999999999988                    5555 577888888888876


Q ss_pred             cCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHH
Q 008328          198 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFL  277 (570)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v  277 (570)
                      .                                        ++.+++.       +++.+|..|+||||+|++.|+.++|
T Consensus       267 ~----------------------------------------~~~Ll~~-------~~n~~d~~G~TpLh~A~~~g~~~~v  299 (327)
T 1sw6_A          267 D----------------------------------------LKWIIAN-------MLNAQDSNGDTCLNIAARLGNISIV  299 (327)
T ss_dssp             S----------------------------------------HHHHHHH-------TTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             H----------------------------------------HHHHHHh-------CCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            3                                        2222222       5788899999999999999999999


Q ss_pred             HHHHHhCCcccccccCCCCchhHHHHHhC
Q 008328          278 MVLIQMYPNLIWKVDDHSRSMFHIAVVHR  306 (570)
Q Consensus       278 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  306 (570)
                      ++|+++|++ ++.+|.+|+||||+|+++|
T Consensus       300 ~~Ll~~Gad-~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          300 DALLDYGAD-PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence            999999999 6788999999999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.8e-36  Score=289.01  Aligned_cols=136  Identities=21%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCcc---chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCCh
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNLNPE---AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT   90 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~---~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T   90 (570)
                      .|.+|+||||+|+..|+.++++.|++....   +++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.|
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t   80 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFRGNT   80 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTTCCC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCC
Confidence            455555555555555555555555543221   23333 4555555555555555555555555  45555555555555


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCC-----CCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc
Q 008328           91 ALCFAAVSGVTKIAEVMVNKNREL-----PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE  152 (570)
Q Consensus        91 pLh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~  152 (570)
                      |||+|+..|+.+++++|++++++.     ....+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  147 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE  147 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            555555555555555555555431     12344455555555555555555555555555444433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=6e-35  Score=277.60  Aligned_cols=192  Identities=19%  Similarity=0.202  Sum_probs=175.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccc-----cccccCCChH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL-----ALRNKVGNTA   91 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~Tp   91 (570)
                      .|+||||.||+.|+.++++.|++..+.+++.+ |..|+||||+|+..|+.+++++|++  .++++     +.+|..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcCH
Confidence            58999999999999999999999878888887 9999999999999999999999999  67776     6778899999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCcCCC-------------CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhH
Q 008328           92 LCFAAVSGVTKIAEVMVNKNRELPSIRGN-------------KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL  158 (570)
Q Consensus        92 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  158 (570)
                      ||+|+..|+.+++++|+++|++++. ++.             .|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            9999999999999999999999874 443             79999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcHHHH----HHHHhhCcccc-----cccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcC
Q 008328          159 LVAVIDAGLYDVA----LDLIQHHPQLA-----MARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSV  219 (570)
Q Consensus       159 L~~A~~~~~~~~~----~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~  219 (570)
                      ||+|+..|+.+++    ++|++.+++..     +.+|..|+||||+|++.|+       .++++.|++.+
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~-------~~~v~~Ll~~g  220 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN-------IVMFQHLMQKR  220 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC-------HHHHHHHHhcC
Confidence            9999999999988    99999998764     5789999999999999984       66677666554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-34  Score=272.29  Aligned_cols=204  Identities=20%  Similarity=0.168  Sum_probs=185.1

Q ss_pred             ccccCCcccC-CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc
Q 008328            5 KCLKGGVERN-CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL   83 (570)
Q Consensus         5 ~~~~~~~~~~-d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~   83 (570)
                      ...|.+++.. |.+|+||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++. .+.+++.
T Consensus        11 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~   87 (223)
T 2f8y_A           11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADAQGVFQILIRN-RATDLDA   87 (223)
T ss_dssp             EETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHB-TTSCTTC
T ss_pred             HHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence            3456777665 88999999999999999999999986 5667766 89999999999999999999999994 3348999


Q ss_pred             cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH
Q 008328           84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI  163 (570)
Q Consensus        84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  163 (570)
                      +|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  166 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA  166 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH
Confidence            99999999999999999999999999999988 68999999999999999999999999999999999999999999999


Q ss_pred             HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCc
Q 008328          164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP  220 (570)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~  220 (570)
                      ..|+.+++++|+++|++. +.+|..|.||||+|++.++       .++++.|+..+.
T Consensus       167 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~-------~~i~~~L~~~g~  215 (223)
T 2f8y_A          167 REGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMH-------HDIVRLLDEYNL  215 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcc-------hHHHHHHHHcCC
Confidence            999999999999999998 6899999999999999984       667777665543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.1e-36  Score=285.31  Aligned_cols=217  Identities=16%  Similarity=0.194  Sum_probs=166.2

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccC--cccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMT--PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC  127 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh  127 (570)
                      |.+|+||||+|+..|+.+++++|++...  +++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHH
Confidence            7888899999999999888888887311  23688888888899999888888888888888888877 58888888888


Q ss_pred             HHHHcCCHHHHHHHhhccCCc------cccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328          128 MAALLGHKEMIWYLYSVTKEE------DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       128 ~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      +|+..|+.+++++|+++|+++      +..+..|.||||+|+..|+.+++++|+++|                       
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----------------------  140 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-----------------------  140 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-----------------------
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----------------------
Confidence            888888888888888888753      333444444444444444444444444444                       


Q ss_pred             ccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhcc-CCChHHHHHHHcCcHHHHHHH
Q 008328          202 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVL  280 (570)
Q Consensus       202 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~L  280 (570)
                                                                        ++++..+. .|.||||+|+..|+.+++++|
T Consensus       141 --------------------------------------------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  170 (236)
T 1ikn_D          141 --------------------------------------------------ADVNAQEPCNGRTALHLAVDLQNPDLVSLL  170 (236)
T ss_dssp             --------------------------------------------------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             --------------------------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                                              44444554 677888888888899999999


Q ss_pred             HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhC
Q 008328          281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA  343 (570)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~  343 (570)
                      +++|++ .+.+|..|+||||+|+.+++.+++++|+++|++...  ..++.+|.||.+.+....
T Consensus       171 l~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          171 LKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ--MLPESEDEESYDTESEFT  230 (236)
T ss_dssp             HTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS--SCCCCCTTTCCCCC----
T ss_pred             HHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh--cCCccchHHHHhhhcccc
Confidence            999999 677899999999999999999999999999998763  348999999998876543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6e-34  Score=264.31  Aligned_cols=198  Identities=18%  Similarity=0.180  Sum_probs=130.6

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  130 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~  130 (570)
                      ..+.||||.|+..|+.+.++.|++. .+.+++.+|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~   80 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAG   80 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            3456666666666666666666663 333666666666666666666666666666666666655 45666666666666


Q ss_pred             HcCCHHHHHHHh-hccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          131 LLGHKEMIWYLY-SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       131 ~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      ..|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++|+++++...+.+|..|+||||+|+..++.       
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~-------  153 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG-------  153 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC-------
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc-------
Confidence            666666666666 334466666666666666666666666666666666322356677777777777765520       


Q ss_pred             hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328          210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  289 (570)
Q Consensus       210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  289 (570)
                                                                                  ..++.+++++|+++|++ .+
T Consensus       154 ------------------------------------------------------------~~~~~~~v~~Ll~~ga~-~~  172 (201)
T 3hra_A          154 ------------------------------------------------------------NQLYQDIVKLLMENGAD-QS  172 (201)
T ss_dssp             ------------------------------------------------------------SHHHHHHHHHHHHTTCC-TT
T ss_pred             ------------------------------------------------------------hhhHHHHHHHHHHCCCC-CC
Confidence                                                                        01236788888888888 56


Q ss_pred             cccCCCCchhHHHHHhCchHHHHHHHHhC
Q 008328          290 KVDDHSRSMFHIAVVHRQEKIFNLIYELG  318 (570)
Q Consensus       290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g  318 (570)
                      .+|..|+||||+|+.+|+.+++++|+++|
T Consensus       173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          173 IKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            67888888888888888888888888765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1e-33  Score=262.69  Aligned_cols=191  Identities=18%  Similarity=0.198  Sum_probs=176.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      +..+.||||.||..|+.+.++.+++..+.+++.+ |.+|+||||+|++.|+.+++++|++  .|++++.+|..|.||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHH
Confidence            3568999999999999999999999887788877 8999999999999999999999999  899999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcC-CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc-CCccccccchhhHHHHHHHhCc-----
Q 008328           95 AAVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGL-----  167 (570)
Q Consensus        95 A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-----  167 (570)
                      |+..|+.+++++|++++ .+++ .+|..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++     
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLN-KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHHcCCHHHHHHHHhccCcccc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence            99999999999999555 4555 79999999999999999999999999999 9999999999999999999988     


Q ss_pred             HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh
Q 008328          168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY  217 (570)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~  217 (570)
                      .+++++|+++|+++ +.+|.+|+||||+|++.++       .++++.|+.
T Consensus       158 ~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~  199 (201)
T 3hra_A          158 QDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGY-------TEISKILAQ  199 (201)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC-------HHHHHHHHT
T ss_pred             HHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCC-------HhHHHHHHh
Confidence            99999999999998 6899999999999999984       666666654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.2e-34  Score=279.85  Aligned_cols=197  Identities=17%  Similarity=0.126  Sum_probs=131.5

Q ss_pred             CCcHHHHHHhcCCHH----HHHHHHHccCcccccc----cccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCc----
Q 008328           53 QDTALHIAAGARRTL----FVQELVNLMTPEDLAL----RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSI----  117 (570)
Q Consensus        53 g~TpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~----  117 (570)
                      |+||||.|++.|+.+    ++++|++  .|++++.    +|.+|+||||+|+..   |+.+++++|+++|++++..    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            556666666666664    3444444  4566665    566666666666666   6666666666665544311    


Q ss_pred             ------CCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccc-------------hhhHHHHHHHhCcHHHHHHHHh--
Q 008328          118 ------RGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-------------RIELLVAVIDAGLYDVALDLIQ--  176 (570)
Q Consensus       118 ------~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~~~~~~~~~Ll~--  176 (570)
                            +|..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++  
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                  2356777777777777777777777777777776665             5666666666666666666666  


Q ss_pred             -hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchh
Q 008328          177 -HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIG  255 (570)
Q Consensus       177 -~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~  255 (570)
                       .|+++ +.+|.+|+||||+|+..+                                                       
T Consensus       160 ~~ga~~-n~~d~~g~TpLh~A~~~~-------------------------------------------------------  183 (256)
T 2etb_A          160 HQPASL-EATDSLGNTVLHALVMIA-------------------------------------------------------  183 (256)
T ss_dssp             SCCCCT-TCCCTTSCCHHHHHHHHC-------------------------------------------------------
T ss_pred             ccCCCc-CccCCCCCCHHHHHHHcc-------------------------------------------------------
Confidence             55554 456666666666666521                                                       


Q ss_pred             hhccCCChHHHHHHHcCcH-------HHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          256 ELLRKPSRLLFTAVELGNV-------EFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       256 ~~d~~g~tpLh~A~~~g~~-------~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                                     .++.       +++++|+++|+++.      +.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus       184 ---------------~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          184 ---------------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             ---------------CSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ---------------cCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence                           2233       48888888888842      6788999999999999999999999999887765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.1e-34  Score=281.07  Aligned_cols=170  Identities=14%  Similarity=0.088  Sum_probs=88.3

Q ss_pred             cCCcccCCCCCChHHHHHHHcCCHHHHHHHHhc---Cccchh---hccCCCCCcHHHHHHhc---CCHHHHHHHHHccCc
Q 008328            8 KGGVERNCFTSYAPLHLAALKGDWDFARNFFNL---NPEAVC---VRISRNQDTALHIAAGA---RRTLFVQELVNLMTP   78 (570)
Q Consensus         8 ~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~---~~~~~~---~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~   78 (570)
                      +...+..|..|+||||.||+.|+.++|+.|++.   .+.+++   ...|..|+||||+|+..   |+.+++++|++  .|
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~--~g   80 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD--VA   80 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH--HH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH--hh
Confidence            345566677777777777777777777777653   222222   12266777777777765   77777777777  55


Q ss_pred             ccc-------cc----cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328           79 EDL-------AL----RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  147 (570)
Q Consensus        79 ~~~-------~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~  147 (570)
                      +++       +.    +|..|.||||+|+..|+.+++++|+++|++++ .++..+.                   ....+
T Consensus        81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~-------------------~~~~~  140 (273)
T 2pnn_A           81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDF-------------------FKKTK  140 (273)
T ss_dssp             HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGG-------------------GSSCS
T ss_pred             ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccc-------------------ccccc
Confidence            542       21    34455555555555555555555555555554 2333000                   00000


Q ss_pred             ccccccchhhHHHHHHHhCcHHHHHHHHh---hCcccccccCCCCCcHHHHHHcCC
Q 008328          148 EDLKEEDRIELLVAVIDAGLYDVALDLIQ---HHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       148 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      .+..+..|.||||+|+..|+.+++++|++   .|+++ +.+|.+|+||||+|+..+
T Consensus       141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~  195 (273)
T 2pnn_A          141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVA  195 (273)
T ss_dssp             SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHcc
Confidence            00001145555555555555555555555   45554 456666666666666554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.1e-33  Score=252.14  Aligned_cols=158  Identities=25%  Similarity=0.280  Sum_probs=148.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      ++|+.||+.|+.++|+.||+. +.+++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|.+|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~--~gad~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHh--cccchhhhccCCCCHHHHHHHcC
Confidence            479999999999999999986 6778887 9999999999999999999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCc
Q 008328          100 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  179 (570)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  179 (570)
                      +.+++++|+++|++++ .+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|++.|+.+++++|+++|+
T Consensus        82 ~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           82 HKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999998 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 008328          180 QLA  182 (570)
Q Consensus       180 ~~~  182 (570)
                      ++.
T Consensus       161 ~ie  163 (169)
T 4gpm_A          161 WLE  163 (169)
T ss_dssp             ---
T ss_pred             CcC
Confidence            874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.2e-33  Score=275.64  Aligned_cols=228  Identities=13%  Similarity=0.115  Sum_probs=172.0

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcc--Cccccc----ccccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCC----
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLM--TPEDLA----LRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPS----  116 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~----  116 (570)
                      |..|+||||+|++.|+.++|+.|++..  .+.+++    .+|..|.||||+|+..   |+.+++++|+++|++...    
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            889999999999999999988888721  344554    4588999999999986   999999999998865321    


Q ss_pred             ------cCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCC
Q 008328          117 ------IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE  190 (570)
Q Consensus       117 ------~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  190 (570)
                            ..|..|.||||+|+..|+.+++++|+++|++++..+..+..                   ...+ ....+..|+
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~-~~~~~~~g~  149 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-------------------KKTK-GRPGFYFGE  149 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------SSCS-SSCCCCSCB
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------cccc-ccccccCCC
Confidence                  15678999999999999999999999999999888776521                   0011 235667899


Q ss_pred             cHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHH
Q 008328          191 TALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVE  270 (570)
Q Consensus       191 tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~  270 (570)
                      ||||+|+..|+       .++++.|+...                             ..+++++.+|..|+||||+|+.
T Consensus       150 tpL~~A~~~g~-------~~~v~~Ll~~~-----------------------------~~gad~~~~d~~g~tpLh~A~~  193 (273)
T 2pnn_A          150 LPLSLAACTNQ-------LAIVKFLLQNS-----------------------------WQPADISARDSVGNTVLHALVE  193 (273)
T ss_dssp             SHHHHHHHTTC-------HHHHHHHHHCS-----------------------------SCCCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHcCC-------HHHHHHHHhcc-----------------------------cCCCCceeeCCCCCcHHHHHHH
Confidence            99999999985       33333332210                             0488999999999999999999


Q ss_pred             cCc---------HHHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCc-hhhhhhhhcccCCCc
Q 008328          271 LGN---------VEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGA-HKDLIASYKDENNNN  334 (570)
Q Consensus       271 ~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~n~~d~~G~T  334 (570)
                      .|+         .+++++|+++|+++.      +.+|..|+||||+|+.+|+.+++++|+++|+ |+..    .+..+.+
T Consensus       194 ~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~----~~~~~~~  269 (273)
T 2pnn_A          194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC----RHAAAHH  269 (273)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---------------
T ss_pred             ccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh----hhhhhhh
Confidence            998         899999999999954      3589999999999999999999999999999 6663    6666666


Q ss_pred             HHH
Q 008328          335 MLH  337 (570)
Q Consensus       335 pLh  337 (570)
                      |-|
T Consensus       270 ~~~  272 (273)
T 2pnn_A          270 HHH  272 (273)
T ss_dssp             ---
T ss_pred             ccC
Confidence            543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=9.8e-34  Score=273.54  Aligned_cols=192  Identities=16%  Similarity=0.135  Sum_probs=168.2

Q ss_pred             CCChHHHHHHHcCCHHHH----HHHHhcCccchhh---ccCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccc---
Q 008328           17 TSYAPLHLAALKGDWDFA----RNFFNLNPEAVCV---RISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLAL---   83 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v----~~ll~~~~~~~~~---~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~---   83 (570)
                      .|+||||.||+.|+.+.+    +++++. +.+++.   ..|..|+||||+|+..   |+.+++++|++  .|++++.   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ--IDKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH--HHHHTTCSSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh--cCCcccchhh
Confidence            489999999999999855    444444 566666   2389999999999999   99999999999  7887763   


Q ss_pred             --------cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCC-------------CCcHHHHHHHcCCHHHHHHHh
Q 008328           84 --------RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-------------GATPLCMAALLGHKEMIWYLY  142 (570)
Q Consensus        84 --------~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~TpLh~A~~~g~~~~v~~Ll  142 (570)
                              +|..|.||||+|+..|+.+++++|+++|++++ .++..             |.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                    34789999999999999999999999999988 46665             999999999999999999999


Q ss_pred             h---ccCCccccccchhhHHHHHHH--hCcHH-------HHHHHHhhCcccc------cccCCCCCcHHHHHHcCCCccc
Q 008328          143 S---VTKEEDLKEEDRIELLVAVID--AGLYD-------VALDLIQHHPQLA------MARDGNGETALHVLARKPSAFA  204 (570)
Q Consensus       143 ~---~g~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~~~~~~  204 (570)
                      +   +|++++.+|.+|.||||+|+.  .++.+       ++++|+++|+++.      +.+|.+|+||||+|+..|+   
T Consensus       157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~---  233 (256)
T 2etb_A          157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK---  233 (256)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC---
T ss_pred             hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC---
Confidence            9   999999999999999999999  78888       9999999999873      5899999999999999984   


Q ss_pred             cCCchhhhhhhhhcC
Q 008328          205 SGSQLGFWRRCIYSV  219 (570)
Q Consensus       205 ~~~~~~~~~~l~~~~  219 (570)
                          .++++.|++.+
T Consensus       234 ----~~~v~~Ll~~g  244 (256)
T 2etb_A          234 ----IEIFRHILQRE  244 (256)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHhCC
Confidence                66777766554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=7.3e-32  Score=242.04  Aligned_cols=157  Identities=23%  Similarity=0.262  Sum_probs=146.0

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      ++|+.||+.|+.++|+.|++  .|+|+|.+|.+|+||||+|+..++.+++++|+++|++++ .+|..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCC
Confidence            57999999999999999999  899999999999999999999999999999999999988 699999999999999999


Q ss_pred             HHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhh
Q 008328          135 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR  214 (570)
Q Consensus       135 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~  214 (570)
                      .+++++|+++|++++.+|.+|+||||+|++.|+.+++++|+++|+++ +.+|.+|+||||+|++.|+       .++++.
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~-------~~iv~~  154 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGN-------EEVVKL  154 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC-------HHHHHH
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC-------HHHHHH
Confidence            99999999999999999999999999999999999999999999998 6899999999999999984       677777


Q ss_pred             hhhcCccc
Q 008328          215 CIYSVPGM  222 (570)
Q Consensus       215 l~~~~~~~  222 (570)
                      |++.+.++
T Consensus       155 Ll~~GA~i  162 (169)
T 4gpm_A          155 LEKQGGWL  162 (169)
T ss_dssp             HHTC----
T ss_pred             HHHCCCCc
Confidence            77665554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=5.9e-32  Score=244.34  Aligned_cols=170  Identities=18%  Similarity=0.165  Sum_probs=154.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV   97 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~   97 (570)
                      +.||||.||..|+.+.++.+++..+..++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCchhhcccCCCHHHHHHH
Confidence            5689999999999999999999877767776 8999999999999999999999999  799999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            999999999999999988 6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCCCcH
Q 008328          178 HPQLAMARDGNGETA  192 (570)
Q Consensus       178 ~~~~~~~~d~~g~tp  192 (570)
                      +++. ..++..|.||
T Consensus       158 ~~~~-~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKL-FQSNLVPADP  171 (172)
T ss_dssp             HHHH-SCC-------
T ss_pred             HHHH-hcccCCCCCC
Confidence            9988 4778888876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=1.9e-32  Score=265.04  Aligned_cols=140  Identities=16%  Similarity=0.077  Sum_probs=87.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc--------------cchhhHHHHHHHhCcHHHHHHHHh---hCccc
Q 008328          119 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--------------EDRIELLVAVIDAGLYDVALDLIQ---HHPQL  181 (570)
Q Consensus       119 ~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~Ll~---~~~~~  181 (570)
                      |..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+++++|++   .|+++
T Consensus        90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~  169 (260)
T 3jxi_A           90 YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL  169 (260)
T ss_dssp             SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC
Confidence            3355555555555555555555555555555555              345555555555555566666666   55555


Q ss_pred             ccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCC
Q 008328          182 AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKP  261 (570)
Q Consensus       182 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g  261 (570)
                       +.+|.+|+||||+|+..++..     .                           +.                       
T Consensus       170 -~~~d~~g~TpLh~A~~~~~~~-----~---------------------------~~-----------------------  193 (260)
T 3jxi_A          170 -RRQDSRGNTVLHALVAIADNT-----R---------------------------EN-----------------------  193 (260)
T ss_dssp             -TCCCTTSCCHHHHHHHHCCSS-----H---------------------------HH-----------------------
T ss_pred             -cccCCCCCcHHHHHHHhccCc-----h---------------------------hH-----------------------
Confidence             466777777777777644210     0                           00                       


Q ss_pred             ChHHHHHHHcCcHHHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          262 SRLLFTAVELGNVEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       262 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                              .....+++++|+++|+++.      +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       194 --------~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          194 --------TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence                    0012467778888877742      5678888888888888888888888888887654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.5e-32  Score=265.80  Aligned_cols=196  Identities=17%  Similarity=0.164  Sum_probs=168.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHh---cCccchhhc---cCCCCCcHHHHHH---hcCCHHHHHHHHHccCccc-----
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFN---LNPEAVCVR---ISRNQDTALHIAA---GARRTLFVQELVNLMTPED-----   80 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~~~~~---~~~~g~TpLh~A~---~~g~~~~v~~Ll~~~~~~~-----   80 (570)
                      +..|+||||.||+.|+.+.++.+++   ..+.+++..   .|..|+||||+|+   +.|+.+++++|++  .+++     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD--IAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH--HHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH--hcccccchH
Confidence            5678999999999999997666665   234444433   1477999999999   7799999999999  5644     


Q ss_pred             ------ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCC--------------CCCCcHHHHHHHcCCHHHHHH
Q 008328           81 ------LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRG--------------NKGATPLCMAALLGHKEMIWY  140 (570)
Q Consensus        81 ------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~TpLh~A~~~g~~~~v~~  140 (570)
                            ++.+|..|.||||+|+..|+.+++++|+++|++++ .++              ..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  45566699999999999999999999999999988 466              689999999999999999999


Q ss_pred             Hhh---ccCCccccccchhhHHHHHHHhCc---------HHHHHHHHhhCcccc------cccCCCCCcHHHHHHcCCCc
Q 008328          141 LYS---VTKEEDLKEEDRIELLVAVIDAGL---------YDVALDLIQHHPQLA------MARDGNGETALHVLARKPSA  202 (570)
Q Consensus       141 Ll~---~g~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~~~~  202 (570)
                      |++   +|++++.+|..|.||||+|+..++         .+++++|+++|+++.      +.+|.+|+||||+|++.|+ 
T Consensus       159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~-  237 (260)
T 3jxi_A          159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK-  237 (260)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC-
T ss_pred             HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC-
Confidence            999   999999999999999999999888         799999999998873      4789999999999999984 


Q ss_pred             cccCCchhhhhhhhhcCc
Q 008328          203 FASGSQLGFWRRCIYSVP  220 (570)
Q Consensus       203 ~~~~~~~~~~~~l~~~~~  220 (570)
                            .++++.|+++++
T Consensus       238 ------~~~v~~Ll~~g~  249 (260)
T 3jxi_A          238 ------IGIFQHIIRREI  249 (260)
T ss_dssp             ------HHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHhCC
Confidence                  677777765543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.1e-31  Score=244.21  Aligned_cols=164  Identities=15%  Similarity=0.166  Sum_probs=153.3

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      .+|.+|.+|+||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~  102 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDFSGK  102 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTSC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCC
Confidence            4677899999999999999999999999986 5566666 8899999999999999999999999  7999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHH
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD  169 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  169 (570)
                      ||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence            99999999999999999999999987 68999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 008328          170 VALDLIQHH  178 (570)
Q Consensus       170 ~~~~Ll~~~  178 (570)
                      ++++|++.+
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=8.3e-33  Score=279.71  Aligned_cols=275  Identities=10%  Similarity=-0.014  Sum_probs=160.0

Q ss_pred             CChHHHHHHH-cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCCChHHH
Q 008328           18 SYAPLHLAAL-KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALC   93 (570)
Q Consensus        18 g~t~Lh~Aa~-~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh   93 (570)
                      +.++++.|+. .++.+.+++++++         +.+++||||+|++.|+.++|++|++  .|+.   .+..|..|.||||
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~--~ga~~~~~~~~~~~~~tpL~  133 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCL--LLTSDEIVKVIQAENYQAFR  133 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTT--C--CCSSCC--CHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHH--cCCcHHHHHHhccCCCCHHH
Confidence            4556666665 4566666665543         3345588888888888888888877  5552   1234456677888


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCC--CcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccc--cccchhhHHHHHH-HhCcH
Q 008328           94 FAAVSGVTKIAEVMVNKNRELP--SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDL--KEEDRIELLVAVI-DAGLY  168 (570)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~  168 (570)
                      +|++.|+.++|++|+++|++..  ...+.+ .||||+|+..|+.++|++|+++|++++.  .+.+|.||||+|+ .+|+.
T Consensus       134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence            8888888888888888876521  112222 7788888888888888888888877776  7777788888888 88888


Q ss_pred             HHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHH------------H
Q 008328          169 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA------------L  236 (570)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~------------~  236 (570)
                      +++++|++.|+        .|.||||+|+..|+       .++++.|+..+.++...  .++++.++            .
T Consensus       213 eiv~~Ll~~ga--------~~~taL~~Aa~~g~-------~evv~lL~~~ga~~~~~--~~~l~~A~~~g~~~vv~~~~~  275 (376)
T 2aja_A          213 NVINFLLDCPV--------MLAYAEIHEFEYGE-------KYVNPFIARHVNRLKEM--HDAFKLSNPDGVFDLVTKSEC  275 (376)
T ss_dssp             HHHHHHTTSHH--------HHHHHHHCTTTTTT-------TTHHHHHHHHHHHHHHH--HTTTTTTSSSSCCCCSSHHHH
T ss_pred             HHHHHHHhCCC--------ccchHHHHHHHCCC-------HHHHHHHHhcCcccccc--cHHHHHHHHCCChhhhcHHhh
Confidence            88888877543        26778888877773       55666666544332111  01111111            0


Q ss_pred             HHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcc----cccccCCCCchhHHHHHhCchHHHH
Q 008328          237 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL----IWKVDDHSRSMFHIAVVHRQEKIFN  312 (570)
Q Consensus       237 ~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~iv~  312 (570)
                      ....+++..++                   .+...+..+.+++|++.+..-    .....+.+.||||+|+..|+.++++
T Consensus       276 ~~~~~~~~~li-------------------~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~  336 (376)
T 2aja_A          276 LQGFYMLRNLI-------------------RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA  336 (376)
T ss_dssp             HHHHHHHHHHH-------------------HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHH
T ss_pred             hhhHHHHHHHH-------------------HcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHH
Confidence            00001111111                   011123466777777633210    0122346789999999999999999


Q ss_pred             HHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          313 LIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       313 ~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      +|++.|   .    .+|..|+||+.+|-+.|..+.
T Consensus       337 lLl~~~---~----v~~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          337 LLLSIP---S----VLALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             HHTTSH---H----HHHSCC---------------
T ss_pred             HHHcCh---H----HHHHHHHhccccccccccccH
Confidence            999865   3    288999999999999887763

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1e-30  Score=235.03  Aligned_cols=161  Identities=18%  Similarity=0.192  Sum_probs=153.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                      +|.||||.||..|+.+++++|++.+ .+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCcCCCCCcHHHHHH
Confidence            5899999999999999999999874 567766 8999999999999999999999999  89999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHh
Q 008328           97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ  176 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  176 (570)
                      ..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999988 689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCcccc
Q 008328          177 HHPQLA  182 (570)
Q Consensus       177 ~~~~~~  182 (570)
                      ++.+..
T Consensus       157 ~~~~~~  162 (167)
T 3v31_A          157 HLLKLL  162 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            987764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=9.1e-31  Score=234.79  Aligned_cols=161  Identities=25%  Similarity=0.197  Sum_probs=149.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC   93 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh   93 (570)
                      .|.+|.||||.|++.|+.++++.|++..+...+.. +..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKDKGGLVPLH   80 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHh--cCCCCCccCCCCCCHHH
Confidence            47789999999999999999999998777666665 8889999999999999999999999  89999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328           94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  173 (570)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  173 (570)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+|+|++ ++.+++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             HHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence            9999999999999999999988 699999999999999999999999999999999999999999999877 89999999


Q ss_pred             HHhhCc
Q 008328          174 LIQHHP  179 (570)
Q Consensus       174 Ll~~~~  179 (570)
                      |+++|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            998875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.8e-30  Score=236.30  Aligned_cols=168  Identities=13%  Similarity=0.073  Sum_probs=155.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      .++.+|||.||..|+.++++.|++..+.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCCHHHHH
Confidence            468899999999999999999999888888777 8999999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHH
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI  175 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  175 (570)
                      +..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCcccccccCCC
Q 008328          176 QHHPQLAMARDGN  188 (570)
Q Consensus       176 ~~~~~~~~~~d~~  188 (570)
                      +.|+++. ..+..
T Consensus       159 ~~g~~~~-~~~~~  170 (179)
T 3f6q_A          159 KMGQNLN-RIPYK  170 (179)
T ss_dssp             HTTCCCS-CBCCC
T ss_pred             HhhcCcc-cCCcc
Confidence            9999884 44433

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=1.1e-32  Score=278.92  Aligned_cols=270  Identities=14%  Similarity=0.064  Sum_probs=182.1

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchh-hccCCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCC
Q 008328           13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC-VRISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVG   88 (570)
Q Consensus        13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~-~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g   88 (570)
                      ..+.+++||||.||+.|+.++|++|++.+..... ...+..|.||||+||+.|+.++|++|++  .|++   .+..+.+ 
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~-  163 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN-  163 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH-
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC-
Confidence            3466778999999999999999999986542111 1125578899999999999999999999  7864   2333333 


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCC-cCCCCCCcHHHHHH-HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKNRELPS-IRGNKGATPLCMAA-LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~TpLh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      .||||+|+..|+.+++++|+++|++++. ..|..|.||||+|+ .+|+.++|++|+++|+       .|.||||.|+.+|
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g  236 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence            9999999999999999999999998762 27788999999999 9999999999999874       3899999999999


Q ss_pred             cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCc-----hhhhhhhhhcCccchhccchhhhHHHHHHHHHH
Q 008328          167 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQ-----LGFWRRCIYSVPGMRAILDPKLMHLQALELVKR  241 (570)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~  241 (570)
                      +.+++++|++++++.. ..|    ++++.|+..|+.+.....     ..+++.++.....       .     ..+.++.
T Consensus       237 ~~evv~lL~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-------~-----~~~~~~~  299 (376)
T 2aja_A          237 EKYVNPFIARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-------V-----LLDDIRF  299 (376)
T ss_dssp             TTTHHHHHHHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-------G-----GHHHHHH
T ss_pred             CHHHHHHHHhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-------h-----HHHHHHH
Confidence            9999999999998873 333    478888888864322110     0122333332210       0     1223333


Q ss_pred             HHHH----HHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh
Q 008328          242 LWEQ----VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL  317 (570)
Q Consensus       242 l~~~----~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  317 (570)
                      +++.    .+...+.++    ..+.||||+|+..|+.+++++|++.+    ..+|..|+|++.+|-.+|+.++.+.-++.
T Consensus       300 Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          300 LLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             HHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----------------------
T ss_pred             HHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHHHHHH
Confidence            3321    111123333    35679999999999999999999754    45688999999999999999998876543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.8e-30  Score=229.95  Aligned_cols=159  Identities=18%  Similarity=0.149  Sum_probs=147.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      ....||||.|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|++  .|++++.+|..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLL--RGANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHH--TTCCTTCCCTTSCCHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC-CCCcccc-CccCccHHHHHHc-CcHHHHHHHHH--cCCCCCCCCCCCCCHHHHH
Confidence            3467999999999999999999975 5667766 8999999999999 99999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC-ccccccchhhHHHHHHHhCcHHHHHHH
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE-EDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      +..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999999999999988 6899999999999999999999999999998 599999999999999999999999999


Q ss_pred             HhhCcc
Q 008328          175 IQHHPQ  180 (570)
Q Consensus       175 l~~~~~  180 (570)
                      +++|++
T Consensus       157 l~~GAd  162 (162)
T 1ihb_A          157 QANGAG  162 (162)
T ss_dssp             HHTC--
T ss_pred             HHhCCC
Confidence            999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=6.5e-30  Score=230.22  Aligned_cols=160  Identities=25%  Similarity=0.231  Sum_probs=148.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC   93 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh   93 (570)
                      ....+.||||.||+.|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLR   85 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHH
Confidence            345678999999999999999999986 5667776 8999999999999999999999999  89999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328           94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  173 (570)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  173 (570)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  164 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI  164 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            9999999999999999999987 689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 008328          174 LIQHH  178 (570)
Q Consensus       174 Ll~~~  178 (570)
                      |++.|
T Consensus       165 L~~~G  169 (169)
T 2y1l_E          165 LQKLN  169 (169)
T ss_dssp             HHTC-
T ss_pred             HHHcC
Confidence            99865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=254.17  Aligned_cols=188  Identities=16%  Similarity=0.170  Sum_probs=169.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCcc-chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcc-cccccccCCChHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPE-AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE-DLALRNKVGNTALCFA   95 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~-~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~TpLh~A   95 (570)
                      +++++|.|+..|+.+.++.+++.... .++.+ |.+|+||||+|+..|+.+++++|++  .|+ +++.+|..|.||||+|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TSCCCTTCCCTTSCCHHHHG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCCCCCCCCCCHHHHH
Confidence            56789999999999999988875433 25555 8999999999999999999999999  787 9999999999999999


Q ss_pred             H-----HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHH
Q 008328           96 A-----VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV  170 (570)
Q Consensus        96 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  170 (570)
                      +     ..++.+++++|++.|.+.. ..+..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.++
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            9     6789999999999998776 688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh
Q 008328          171 ALDLIQ-HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY  217 (570)
Q Consensus       171 ~~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~  217 (570)
                      +++|++ .|+++ +.+|.+|+||||+|+..|+       .++++.|+.
T Consensus       232 v~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~-------~~iv~~Ll~  271 (276)
T 4hbd_A          232 AGLLLAVPSCDI-SLTDRDGSTALMVALDAGQ-------SEIASMLYS  271 (276)
T ss_dssp             HHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTC-------HHHHHHHHH
T ss_pred             HHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCC-------HHHHHHHHh
Confidence            999999 78887 6899999999999999984       566666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=5.1e-32  Score=256.41  Aligned_cols=204  Identities=19%  Similarity=0.123  Sum_probs=172.4

Q ss_pred             cccCCccc---CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc
Q 008328            6 CLKGGVER---NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA   82 (570)
Q Consensus         6 ~~~~~~~~---~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~   82 (570)
                      ..+.+++.   .+.+|.||||.||..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++
T Consensus         6 ~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga~~n   81 (229)
T 2vge_A            6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLIT--AGANVN   81 (229)
T ss_dssp             ----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTT
T ss_pred             ccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCC
Confidence            34555544   456678999999999999999999986 4567776 8999999999999999999999999  899999


Q ss_pred             ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH--HHcCCHHHHHHHhhccCCccccccchhhHHH
Q 008328           83 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYSVTKEEDLKEEDRIELLV  160 (570)
Q Consensus        83 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  160 (570)
                      .+|..|+||||+|+..|+.+++++|+++|++++...+..|+||||+|  +..|+.+++++|+++|++++..+..|.++++
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            99999999999999999999999999999999854457999999999  9999999999999999999999999999998


Q ss_pred             HHHHhCcHHHHHHHHhhCccc-ccccCCCCCcHHHHHHcCCCccccCCchhhhhh-hhhcCccch
Q 008328          161 AVIDAGLYDVALDLIQHHPQL-AMARDGNGETALHVLARKPSAFASGSQLGFWRR-CIYSVPGMR  223 (570)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~  223 (570)
                      .++..+..   +.|++.|++. .+.+|.+|+||||+|++.|+       .++++. ++...|.++
T Consensus       162 ~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~-------~~~v~~~~l~~~p~~~  216 (229)
T 2vge_A          162 DYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQ-------EGYVPRNYFGLFPRVK  216 (229)
T ss_dssp             CBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTE-------EEEEEGGGEESSCCCC
T ss_pred             HHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCC-------cceeehhhhhhCCCCC
Confidence            65554433   5778888874 36889999999999999985       566655 344445544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.3e-29  Score=225.01  Aligned_cols=154  Identities=20%  Similarity=0.239  Sum_probs=146.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV   97 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~   97 (570)
                      |.||||.||..|+.+.++.|++..+.+++.. |..|+||||+ +..|+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLK--QGASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHH
Confidence            5799999999999999999998855567766 8999999999 99999999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ ++++.+|.+|.||||+|+..|+.+++++|+++
T Consensus        78 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999987 6899999999999999999999999999 99999999999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.4e-29  Score=233.20  Aligned_cols=161  Identities=20%  Similarity=0.206  Sum_probs=150.6

Q ss_pred             hhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCc
Q 008328           45 VCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT  124 (570)
Q Consensus        45 ~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~T  124 (570)
                      ++.+ |..|+||||+|+..|+.+++++|++  .+++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|
T Consensus        28 ~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t  103 (192)
T 2rfm_A           28 RNYR-DSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKT  103 (192)
T ss_dssp             HTCC-CTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCC
T ss_pred             HhCc-CCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCc
Confidence            4445 8999999999999999999999999  799999999999999999999999999999999999987 68999999


Q ss_pred             HHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccc
Q 008328          125 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFA  204 (570)
Q Consensus       125 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~  204 (570)
                      |||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++   
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~---  179 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGR---  179 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC---
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCc---
Confidence            999999999999999999999999999999999999999999999999999999998 6899999999999999984   


Q ss_pred             cCCchhhhhhhhh
Q 008328          205 SGSQLGFWRRCIY  217 (570)
Q Consensus       205 ~~~~~~~~~~l~~  217 (570)
                          .++++.|+.
T Consensus       180 ----~~~v~~Ll~  188 (192)
T 2rfm_A          180 ----QEVIKIFTE  188 (192)
T ss_dssp             ----HHHHHHHHH
T ss_pred             ----HHHHHHHHh
Confidence                566666553

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=247.94  Aligned_cols=165  Identities=19%  Similarity=0.240  Sum_probs=156.7

Q ss_pred             CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHH-----hcCCHHHHHHHHHccCccccccc
Q 008328           10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA-----GARRTLFVQELVNLMTPEDLALR   84 (570)
Q Consensus        10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~   84 (570)
                      .+|..|.+|+||||+||..|+.++++.|++.+..+++.. |..|.||||+|+     ..++.++++.|++  .|.+.+..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~--~g~~~~~~  179 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALATLKTQDDIETVLQLFR--LGNINAKA  179 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGCCCCSHHHHHHHHHHHH--HSCTTCCC
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHHHhhhhhhHHHHHHHHH--cCCCcccc
Confidence            488999999999999999999999999999866577777 999999999999     6789999999999  78999999


Q ss_pred             ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhh-ccCCccccccchhhHHHHHH
Q 008328           85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVI  163 (570)
Q Consensus        85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~  163 (570)
                      |..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~  258 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL  258 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHH
Confidence            9999999999999999999999999999988 699999999999999999999999999 89999999999999999999


Q ss_pred             HhCcHHHHHHHHhhC
Q 008328          164 DAGLYDVALDLIQHH  178 (570)
Q Consensus       164 ~~~~~~~~~~Ll~~~  178 (570)
                      ..|+.+++++|+++.
T Consensus       259 ~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          259 DAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTCHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHhcc
Confidence            999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.6e-29  Score=228.37  Aligned_cols=95  Identities=14%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCccc-ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPED-LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      +.||||.|+..|+.++++.|++  .+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLR--KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHT--TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHH--cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHH
Confidence            4567777777777777777776  3333 66666777777777777777777777777776665 466667777777777


Q ss_pred             cCCHHHHHHHhhccCCccc
Q 008328          132 LGHKEMIWYLYSVTKEEDL  150 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~~~~  150 (570)
                      .|+.+++++|+++|++++.
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~   97 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINI   97 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTC
T ss_pred             CCCHHHHHHHHHcCCCCCC
Confidence            7776666666666555443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.8e-32  Score=259.59  Aligned_cols=161  Identities=19%  Similarity=0.094  Sum_probs=137.5

Q ss_pred             HHHHhcCccch-hhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 008328           35 RNFFNLNPEAV-CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE  113 (570)
Q Consensus        35 ~~ll~~~~~~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~  113 (570)
                      +.||++..... ....+.+|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            45666543221 11225678899999999999999999999  7999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc-cchhhHHHHH--HHhCcHHHHHHHHhhCcccccccCCCCC
Q 008328          114 LPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAV--IDAGLYDVALDLIQHHPQLAMARDGNGE  190 (570)
Q Consensus       114 ~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  190 (570)
                      ++ .+|..|.||||+|+..|+.+++++|+++|++++..+ .+|.||||+|  +..|+.+++++|++.|+++ +.+|..|.
T Consensus        80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~  157 (229)
T 2vge_A           80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAV  157 (229)
T ss_dssp             TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEE
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCch
Confidence            88 689999999999999999999999999999999987 6999999999  9999999999999999987 57888899


Q ss_pred             cHHHHHHcC
Q 008328          191 TALHVLARK  199 (570)
Q Consensus       191 tpLh~A~~~  199 (570)
                      ||++.++..
T Consensus       158 ~~l~~~~~~  166 (229)
T 2vge_A          158 YALWDYSAE  166 (229)
T ss_dssp             EESSCBCCS
T ss_pred             HHHHHHhhc
Confidence            999865554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.7e-29  Score=222.24  Aligned_cols=151  Identities=23%  Similarity=0.159  Sum_probs=142.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV   97 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~   97 (570)
                      ..||||.|++.|+.+++++|++.+. +++ . |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA-PFT-T-DWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC-CCC-C-CTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC-CCC-c-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHH
Confidence            4689999999999999999998754 333 3 7899999999999999999999999  899999999999999999999


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999988 6899999999999999999999999999999999999999999999999999999886

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.2e-29  Score=223.85  Aligned_cols=158  Identities=16%  Similarity=0.135  Sum_probs=147.2

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  130 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~  130 (570)
                      ....||||.|++.|+.+++++|++  .+.+++.+|..|+||||+|+. |+.+++++|+++|++++ .+|..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            456799999999999999999999  899999999999999999999 99999999999999987 68999999999999


Q ss_pred             HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchh
Q 008328          131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLG  210 (570)
Q Consensus       131 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~  210 (570)
                      ..|+.+++++|+++|++++.++.+|.||||+|+..|+.+++++|++++++..+.+|..|+||||+|+..++       .+
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~-------~~  151 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR-------NE  151 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC-------HH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC-------HH
Confidence            99999999999999999999999999999999999999999999999998667999999999999999984       67


Q ss_pred             hhhhhhhcC
Q 008328          211 FWRRCIYSV  219 (570)
Q Consensus       211 ~~~~l~~~~  219 (570)
                      +++.|+..+
T Consensus       152 ~~~~Ll~~G  160 (162)
T 1ihb_A          152 VVSLMQANG  160 (162)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhC
Confidence            777776554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.8e-29  Score=224.70  Aligned_cols=156  Identities=12%  Similarity=0.146  Sum_probs=146.2

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      .|.||||.|+..|+.+++++|++  .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHH
Confidence            58999999999999999999999  789999999999999999999999999999999999987 689999999999999


Q ss_pred             cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhh
Q 008328          132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF  211 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  211 (570)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++       .++
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~~~  150 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGY-------RSV  150 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC-------HHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCc-------HHH
Confidence            99999999999999999999999999999999999999999999999998 6899999999999999884       555


Q ss_pred             hhhhhhc
Q 008328          212 WRRCIYS  218 (570)
Q Consensus       212 ~~~l~~~  218 (570)
                      ++.|+..
T Consensus       151 ~~~L~~~  157 (167)
T 3v31_A          151 QQVIESH  157 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.5e-28  Score=221.27  Aligned_cols=157  Identities=23%  Similarity=0.250  Sum_probs=146.7

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      ...+.||||.|++.|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHH
Confidence            5678899999999999999999999  899999999999999999999999999999999999987 6899999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      +..|+.+++++|+++|++++..+.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++       .
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~  159 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN-------E  159 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC-------H
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC-------H
Confidence            9999999999999999999999999999999999999999999999999998 6899999999999999984       5


Q ss_pred             hhhhhhhh
Q 008328          210 GFWRRCIY  217 (570)
Q Consensus       210 ~~~~~l~~  217 (570)
                      ++++.|++
T Consensus       160 ~~~~~L~~  167 (169)
T 2y1l_E          160 DLAEILQK  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            66666654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.5e-29  Score=241.52  Aligned_cols=117  Identities=14%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             CChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCC-chhHHH--HHhCchHHHHHHHHhCchhhhhhh-----hcccCC
Q 008328          261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR-SMFHIA--VVHRQEKIFNLIYELGAHKDLIAS-----YKDENN  332 (570)
Q Consensus       261 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~iv~~Ll~~g~~~~~~~n-----~~d~~G  332 (570)
                      |.||||+|+..|+.+++++|+++|+++ +.+|..|. ||||+|  +..|+.+++++|++.|++++...+     ..|..|
T Consensus       103 g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~  181 (239)
T 1ycs_B          103 GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP  181 (239)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCC
Confidence            444444555556677777888888773 44455554 888888  677888888888888888764211     137889


Q ss_pred             CcHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCCCCcchhhhh
Q 008328          333 NNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSE  393 (570)
Q Consensus       333 ~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~  393 (570)
                      ++|++++.+.|..-.+....+.+     +..|.+          ....++.|.+|..+...
T Consensus       182 ~~~~eLa~~~G~~i~vl~~~~~~-----~~~Ww~----------~~~~~~~G~~P~~yv~~  227 (239)
T 1ycs_B          182 QNDDELPMKEGDCMTIIHREDED-----EIEWWW----------ARLNDKEGYVPRNLLGL  227 (239)
T ss_dssp             SSTTBCCBCSSCEEEECCCCTTS-----CSSEEE----------EEETTEEEEEEGGGEEC
T ss_pred             CCCCcccccCCCEEEEEEecCCC-----CCCEEE----------EEECCcEEEeehHHeeE
Confidence            99999999888754333322221     001211          13467789999988653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.3e-29  Score=241.88  Aligned_cols=181  Identities=15%  Similarity=0.067  Sum_probs=135.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF   94 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~   94 (570)
                      +..|.||||.|++.|+.+.++.++++ +.+++.  +..|.||||.|+..|+.+++++|++  .|++++.+|..|.||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHN   76 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHH
Confidence            35799999999999999999999875 555654  5789999999999999999999999  899999999999999999


Q ss_pred             HHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchh-hHHHHH--HHhCcHHHH
Q 008328           95 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI-ELLVAV--IDAGLYDVA  171 (570)
Q Consensus        95 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A--~~~~~~~~~  171 (570)
                      |+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+|  +..|+.+++
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence            999999999999999999988 6999999999999999999999999999999999998877 999999  788999999


Q ss_pred             HHHHhhCccccc--------ccCCCCCcHHHHHHcCCC
Q 008328          172 LDLIQHHPQLAM--------ARDGNGETALHVLARKPS  201 (570)
Q Consensus       172 ~~Ll~~~~~~~~--------~~d~~g~tpLh~A~~~~~  201 (570)
                      ++|++++++...        ..+..+.+|++++.+.|.
T Consensus       156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999999887631        226778899998888774

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.9e-28  Score=215.58  Aligned_cols=144  Identities=21%  Similarity=0.178  Sum_probs=137.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  132 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  132 (570)
                      ..||||.|++.|+.+++++|++  .|.+++ .|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence            4689999999999999999999  678776 58899999999999999999999999999987 6899999999999999


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999998 6899999999999999985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.6e-28  Score=218.78  Aligned_cols=158  Identities=19%  Similarity=0.191  Sum_probs=145.8

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |.+|.||||.|++.|+.++++.|++. .+.+++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHH
Confidence            67899999999999999999999986 577888899999999999999999999999999999987 6899999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|++ +       +.
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~-------~~  153 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-G-------DT  153 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-T-------CH
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-C-------Ch
Confidence            9999999999999999999999999999999999999999999999999998 6899999999999876 4       35


Q ss_pred             hhhhhhhhc
Q 008328          210 GFWRRCIYS  218 (570)
Q Consensus       210 ~~~~~l~~~  218 (570)
                      ++++.|+..
T Consensus       154 ~i~~~L~~~  162 (165)
T 3twr_A          154 DIQDLLRGD  162 (165)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhc
Confidence            666666544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=6.9e-28  Score=213.79  Aligned_cols=153  Identities=19%  Similarity=0.164  Sum_probs=142.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  132 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  132 (570)
                      +.||||.|+..|+.++++.|++. .+.+++.+|..|.||||+ +..|+.+++++|+++|++++ .+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHc
Confidence            57999999999999999999995 466999999999999999 99999999999999999987 6999999999999999


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhh
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW  212 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  212 (570)
                      |+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++. +++ +.+|.+|.||||+|+..++       .+++
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~-------~~~v  149 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGA-------QDLV  149 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCC-------HHHH
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCc-------HHHH
Confidence            999999999999999999999999999999999999999999999 776 6899999999999999984       5666


Q ss_pred             hhhhh
Q 008328          213 RRCIY  217 (570)
Q Consensus       213 ~~l~~  217 (570)
                      +.|++
T Consensus       150 ~~Ll~  154 (156)
T 1bd8_A          150 DILQG  154 (156)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66553

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=6e-28  Score=219.53  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=137.5

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328           51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  130 (570)
Q Consensus        51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~  130 (570)
                      .++.+|||.|++.|+.+++++|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHH
Confidence            5688999999999999999999995 578899999999999999999999999999999999988 68999999999999


Q ss_pred             HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328          131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       131 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..+
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~  149 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPL  149 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998 689999999999998765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.8e-27  Score=205.94  Aligned_cols=134  Identities=17%  Similarity=0.155  Sum_probs=106.0

Q ss_pred             cCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccC
Q 008328            8 KGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV   87 (570)
Q Consensus         8 ~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~   87 (570)
                      +.+++..|.+|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|++  .|++++.+|..
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~   76 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLL--HGAEPNCADPA   76 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHH--HTCCSSCCBTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHH--CCCCCCCcCCC
Confidence            457777788888888888888888888877765 4556665 7778888888888 88888888888  67888888887


Q ss_pred             -CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328           88 -GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  147 (570)
Q Consensus        88 -g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~  147 (570)
                       |.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             7888888888888888888888888776 5777888888888888888888888887764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=7.2e-28  Score=219.73  Aligned_cols=159  Identities=14%  Similarity=0.044  Sum_probs=141.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCH----HHHHHHHHccCcccccccccCCChHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT----LFVQELVNLMTPEDLALRNKVGNTAL   92 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~TpL   92 (570)
                      +++++||.||+.|+.+.++.+++.+..   .+.+..|+||||+|+.+|+.    +++++|++  .|+++|.+|.+|+|||
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLIN--KGADIKSRTKEGTTLF   79 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCCSSCCCTTCCCTH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCCCCCCCCCCCcHH
Confidence            367899999999999999999876432   33136799999999999985    59999999  8999999999999999


Q ss_pred             HHHHHcCc------HHHHHHHHhcCCCCCCcCCCCCC-cHHHHHHHcC-----CHHHHHHHhh-ccCCccccccchhhHH
Q 008328           93 CFAAVSGV------TKIAEVMVNKNRELPSIRGNKGA-TPLCMAALLG-----HKEMIWYLYS-VTKEEDLKEEDRIELL  159 (570)
Q Consensus        93 h~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~g~t~L  159 (570)
                      |+|+..|+      .+++++|+++|++++ .+|..|. ||||+|+..+     +.+++++|++ +|++++.+|..|.|||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            99999987      688999999999998 6999999 9999999954     4569999999 9999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHhhCccc
Q 008328          160 VAVIDAGLYDVALDLIQHHPQL  181 (570)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~~~~~  181 (570)
                      |+|++.|+.+++++|.+.....
T Consensus       159 ~~A~~~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999876544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=3.3e-27  Score=209.49  Aligned_cols=145  Identities=17%  Similarity=0.146  Sum_probs=98.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCCh
Q 008328           11 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT   90 (570)
Q Consensus        11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T   90 (570)
                      .+..+..|.||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+ .|+.+++++|++  .|++++.+|..|.|
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~~~~~d~~g~t   79 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLT   79 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHH--cCCCCCCcCCCCCc
Confidence            445667778888888888888888877765 4556665 777888888874 788888888887  67888888888887


Q ss_pred             -HHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHH
Q 008328           91 -ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA  161 (570)
Q Consensus        91 -pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  161 (570)
                       |||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence             8888888888888888888888776 577788888888888888888888888888888777777777653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.9e-27  Score=203.78  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=126.3

Q ss_pred             cchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCC-
Q 008328           43 EAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-  121 (570)
Q Consensus        43 ~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-  121 (570)
                      .+++.+ |..|+||||+|++.|+.+++++|++  .|++++.+|..|+||||+|+. |+.+++++|+++|++++ .+|.. 
T Consensus         3 ~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~   77 (136)
T 1d9s_A            3 PGIHML-GGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPAT   77 (136)
T ss_dssp             CCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTT
T ss_pred             CCccCC-CCCCccHHHHHHHcCCHHHHHHHHH--cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCC
Confidence            345555 8899999999999999999999999  899999999999999999999 99999999999999988 68888 


Q ss_pred             CCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328          122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  180 (570)
Q Consensus       122 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  180 (570)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=6.5e-27  Score=207.54  Aligned_cols=142  Identities=18%  Similarity=0.079  Sum_probs=120.8

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCc-HHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT-PLCM  128 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~T-pLh~  128 (570)
                      +..|.||||+|++.|+.+++++|++  .|++++.+|..|+||||+|+ .|+.+++++|+++|++++ .+|..|.| |||+
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~   84 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHD   84 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHH
Confidence            6789999999999999999999999  89999999999999999985 899999999999999988 69999999 9999


Q ss_pred             HHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHH
Q 008328          129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL  196 (570)
Q Consensus       129 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A  196 (570)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||.+-+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999998 68999999998744

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.8e-25  Score=193.35  Aligned_cols=126  Identities=24%  Similarity=0.256  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      ...+.||||+|++.|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence            3445666666666666666666666  566666666666666666666666666666666666655 4566666666666


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  178 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  178 (570)
                      +..|+.+++++|+++|++++..|.+|.||||+|+..|+.+++++|++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            6666666666666666666666666666666666666666666666543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.8e-25  Score=188.15  Aligned_cols=125  Identities=27%  Similarity=0.417  Sum_probs=72.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV   97 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~   97 (570)
                      |+||||.|++.|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCcHHHHHHH
Confidence            55666666666666666555554 2334333 5555666666666666666666665  555555555566666666666


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE  147 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~  147 (570)
                      .|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        78 ~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            666666666666655554 4555566666666666666666666555543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=5.9e-25  Score=186.93  Aligned_cols=126  Identities=25%  Similarity=0.347  Sum_probs=122.1

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      +|+||||+|++.|+.+++++|++  .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHH
Confidence            58999999999999999999999  799999999999999999999999999999999999987 689999999999999


Q ss_pred             cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328          132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  180 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  180 (570)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=3.9e-25  Score=191.17  Aligned_cols=128  Identities=21%  Similarity=0.193  Sum_probs=117.7

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHH
Q 008328           13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTAL   92 (570)
Q Consensus        13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL   92 (570)
                      .....|.||||+||..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|.|||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~t~L   84 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDAIGFTPL   84 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHH
Confidence            3456789999999999999999999986 5667776 8999999999999999999999999  8999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT  145 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g  145 (570)
                      |+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999987 69999999999999999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.2e-25  Score=205.06  Aligned_cols=143  Identities=15%  Similarity=0.090  Sum_probs=129.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcH----HHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVT----KIAEVMVNKNRELPSIRGNKGATPLC  127 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~TpLh  127 (570)
                      +.++||.|++.|+.+.++.+++  .  +++.++ ..|+||||+|+..|+.    +++++|+++|++++ .+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~--~--~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE--K--GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH--H--SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHh--c--CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHH
Confidence            5689999999999999999988  3  355666 7899999999999975    59999999999998 69999999999


Q ss_pred             HHHHcCC------HHHHHHHhhccCCccccccchh-hHHHHHHHh-----CcHHHHHHHHh-hCcccccccCCCCCcHHH
Q 008328          128 MAALLGH------KEMIWYLYSVTKEEDLKEEDRI-ELLVAVIDA-----GLYDVALDLIQ-HHPQLAMARDGNGETALH  194 (570)
Q Consensus       128 ~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~-----~~~~~~~~Ll~-~~~~~~~~~d~~g~tpLh  194 (570)
                      +|+..|+      .+++++|+++|++++.+|..|. ||||+|+..     ++.+++++|++ +|+++ +.+|..|+||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHH
Confidence            9999987      5889999999999999999999 999999994     44579999999 99998 699999999999


Q ss_pred             HHHcCCC
Q 008328          195 VLARKPS  201 (570)
Q Consensus       195 ~A~~~~~  201 (570)
                      +|++.++
T Consensus       160 ~A~~~~~  166 (186)
T 3t8k_A          160 FVKRCQK  166 (186)
T ss_dssp             HHHTTTC
T ss_pred             HHHHcCC
Confidence            9999885

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=3.5e-25  Score=191.69  Aligned_cols=127  Identities=17%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHH
Q 008328           13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTAL   92 (570)
Q Consensus        13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL   92 (570)
                      .+|.+|+||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQ--HKALVNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCcccCcCCCCCCHH
Confidence            4455555555555555555555555543 3334443 5555555555555555555555555  4555555555555555


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV  144 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~  144 (570)
                      |+|+..|+.+++++|+++|++++ .+|..|.||||+|+..+..+++++|.+.
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            55555555555555555555554 4555555555555555555555544443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.1e-24  Score=198.53  Aligned_cols=140  Identities=24%  Similarity=0.184  Sum_probs=127.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHH
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC   93 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh   93 (570)
                      |.+|+||||.||..|+.++++.|++  +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+| ..|+||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence            5678999999999999999999998  6677777 8999999999999999999999999  899999998 89999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328           94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  173 (570)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  173 (570)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.                 ..+.+++++|+..|+.++++.
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHH
Confidence            9999999999999999999988 6999999999999976543                 345789999999999999999


Q ss_pred             HHhh
Q 008328          174 LIQH  177 (570)
Q Consensus       174 Ll~~  177 (570)
                      |.++
T Consensus       178 L~~~  181 (183)
T 3deo_A          178 LEGQ  181 (183)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            9764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=3.9e-25  Score=191.41  Aligned_cols=127  Identities=20%  Similarity=0.206  Sum_probs=117.5

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |.+|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A   83 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDA   83 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHHH
Confidence            8899999999999999999999999  899999999999999999999999999999999999987 6899999999999


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCc
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  179 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  179 (570)
                      +..|+.+++++|+++|++++.+|..|.||+|+|+..+..+++++|.+.+.
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999988887776554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=7.4e-26  Score=216.38  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=86.5

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      .+.+++.+++..|+.+.+..+..  .+.++   +.+|.||||+|++.|+.++++.|++ |++++ .+|..|.||||+|+.
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~--~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSY--IAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAG   86 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGG--SCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHH
T ss_pred             CCccHHHHHHHcCCCcccccccc--ccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHH
Confidence            34455555555555444433332  22222   3456666666666666666666666 66555 466666666666666


Q ss_pred             cCCHHHHHHHhhccCCccccc-cchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcC
Q 008328          132 LGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK  199 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  199 (570)
                      .|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus        87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREI  154 (244)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHH
Confidence            666666666666666666665 55666666666666666666666666665 46777888888887753

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.5e-25  Score=204.43  Aligned_cols=113  Identities=18%  Similarity=0.159  Sum_probs=82.3

Q ss_pred             ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc-cchhhHHHHHH
Q 008328           85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVI  163 (570)
Q Consensus        85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~  163 (570)
                      |.+|.||||+|+..|+.++++.|++ |++++ .+|..|.||||+|+..|+.+++++|+++|++++.++ .+|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4566777777777777777777777 66665 467777777777777777777777777777777666 66777777777


Q ss_pred             HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328          164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP  200 (570)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~  200 (570)
                      ..|+.+++++|+++|+++ +.+|.+|+||||+|++.+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREIL  154 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhc
Confidence            777777777777777776 577888888888887643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.6e-24  Score=207.16  Aligned_cols=143  Identities=23%  Similarity=0.170  Sum_probs=130.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHH
Q 008328           15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC   93 (570)
Q Consensus        15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh   93 (570)
                      +.+|+||||.||+.|+.++++.|++  +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+| ..|.||||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSCCCHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence            4578999999999999999999998  5678777 8999999999999999999999999  899999998 88999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328           94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD  173 (570)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  173 (570)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..++                 ...+.||||+|+..|+.+++++
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHH
Confidence            9999999999999999999988 699999999999986432                 2467899999999999999999


Q ss_pred             HHhhCcc
Q 008328          174 LIQHHPQ  180 (570)
Q Consensus       174 Ll~~~~~  180 (570)
                      |++.+.+
T Consensus       179 L~~~~~~  185 (244)
T 3ui2_A          179 LEGQVFE  185 (244)
T ss_dssp             HHHHHEE
T ss_pred             HHHhccc
Confidence            9997554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=4.4e-24  Score=181.06  Aligned_cols=112  Identities=22%  Similarity=0.219  Sum_probs=75.2

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      +..|+||||+|+..|+.+++++|++  .+.+++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH--cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence            4456677777777777777777776  566666666677777777777777777777777766665 4666677777777


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhHHHHHHH
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID  164 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  164 (570)
                      +..|+.+++++|+++|++++.+|.+|.||+|+|..
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            77777777777777777666666666666666643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=206.62  Aligned_cols=139  Identities=17%  Similarity=0.084  Sum_probs=125.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccc------cccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCC
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLAL------RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGA  123 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~------~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~  123 (570)
                      +.++||.|+..|+.+.++.|++  .+++++.      +|..|.||||+|+..   |+.+++++|+++|++++ .+|..|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCC
Confidence            3467999999999999999999  8999988      699999999999997   89999999999999988 6899999


Q ss_pred             cHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328          124 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       124 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      ||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++++++       .|.||||+|+..|+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999998875       58999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=3.5e-24  Score=201.80  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=88.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhc-CCCCCCcCCCCCCcHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCM  128 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~TpLh~  128 (570)
                      +.+|+||||+|+..|+.+++++|++  .|++++.+|..|.||||+|+..|+.+++++|+++ |++++ .+|..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHh--CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHH
Confidence            5567777777777777777777777  6777777777777777777777777777777776 66665 567777777777


Q ss_pred             HHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccc
Q 008328          129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL  181 (570)
Q Consensus       129 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  181 (570)
                      |+..|+.+++++|+++|++++.++.+|.||||+|+..++.++++.|++.++..
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            77777777777777777777777777777777777777777777777776654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=5.5e-24  Score=200.38  Aligned_cols=140  Identities=21%  Similarity=0.221  Sum_probs=114.0

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChH
Q 008328           12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA   91 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp   91 (570)
                      +..|.+|.||||+||..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++. .|++++.+|..|+||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tp  143 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTA  143 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCH
T ss_pred             cccccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCH
Confidence            34566789999999999999999999985 5667776 89999999999999999999999993 399999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccch
Q 008328           92 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR  155 (570)
Q Consensus        92 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  155 (570)
                      ||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.|++.+..+.++
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            999999999999999999999987 799999999999999999999999999999877665543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=1e-23  Score=207.58  Aligned_cols=143  Identities=17%  Similarity=0.080  Sum_probs=122.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCccchhhc-----cCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccccccC
Q 008328           16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKV   87 (570)
Q Consensus        16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~   87 (570)
                      ..+.++||.|+..|+.+.++.+++. +.+++..     .+..|+||||+|+..   |+.+++++|++  .|++++.+|.+
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadvn~~d~~  225 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAAD  225 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSCTTCCCTT
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCCCCCCCCC
Confidence            3456789999999999999999965 4555552     378999999999997   89999999999  79999999999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328           88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL  167 (570)
Q Consensus        88 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  167 (570)
                      |+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            9999999999999999999999999988 7999999999999999999999999999986      57899999999886


Q ss_pred             H
Q 008328          168 Y  168 (570)
Q Consensus       168 ~  168 (570)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=2.2e-23  Score=176.76  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC   93 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh   93 (570)
                      .+..|.||||.|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|..|+||||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLL   78 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHT--TTCCTTCCCTTSCCHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHH
Confidence            356789999999999999999999986 4567776 8999999999999999999999999  89999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHH
Q 008328           94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE  136 (570)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~  136 (570)
                      +|+..|+.+++++|+++|++++ .+|..|.||||+|+..+..+
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999999999987 69999999999995444333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=2.4e-21  Score=188.39  Aligned_cols=165  Identities=19%  Similarity=0.091  Sum_probs=138.8

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCc-------c---ch-------h--hc---cC-------CCCCcHHHHHHhcC
Q 008328           14 NCFTSYAPLHLAALKGDWDFARNFFNLNP-------E---AV-------C--VR---IS-------RNQDTALHIAAGAR   64 (570)
Q Consensus        14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~-------~---~~-------~--~~---~~-------~~g~TpLh~A~~~g   64 (570)
                      .|..+.++|+.+...|+....+.+...-+       .   ..       .  ..   ..       ....++||.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            57889999999999999876654421110       0   00       0  00   00       11236899999999


Q ss_pred             CHHHHHHHHHccCccc------ccccccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH
Q 008328           65 RTLFVQELVNLMTPED------LALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK  135 (570)
Q Consensus        65 ~~~~v~~Ll~~~~~~~------~~~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~  135 (570)
                      +.+.++.+++  .|.+      ++..|..|.||||+|+..   |+.+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus       142 d~~~~~~ll~--~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          142 DIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             CHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred             ccHHHHHHHH--hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence            9999999999  7887      445589999999999999   89999999999999988 6999999999999999999


Q ss_pred             HHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccc
Q 008328          136 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL  181 (570)
Q Consensus       136 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  181 (570)
                      +++++|+++|++++.+|.+|.||||+|+..|+.+++++|++++++.
T Consensus       219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999998743

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=7.6e-22  Score=158.17  Aligned_cols=93  Identities=28%  Similarity=0.408  Sum_probs=77.7

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL  131 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~  131 (570)
                      +|+||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence            47888888888888888888888  788888888888888888888888888888888888877 578888888888888


Q ss_pred             cCCHHHHHHHhhccCC
Q 008328          132 LGHKEMIWYLYSVTKE  147 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~  147 (570)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            8888888888888764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=1.9e-21  Score=195.72  Aligned_cols=145  Identities=16%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             CCCCcHHHHHHhc-CCHHHHHHHHHccCcccccccc--cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328           51 RNQDTALHIAAGA-RRTLFVQELVNLMTPEDLALRN--KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC  127 (570)
Q Consensus        51 ~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh  127 (570)
                      ..+.||||.|+.. |+.++++.|++  .|++++..|  ..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence            3455666666666 66666666666  566666666  566666666666666666666666666665 46666666666


Q ss_pred             HHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccc--cccCCCCCcHHHHHHc
Q 008328          128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLAR  198 (570)
Q Consensus       128 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~d~~g~tpLh~A~~  198 (570)
                      +|+..|+.+++++|+++|++++..|.+|.||||+|+..++.+++++|++.+....  ...+..+.|+++.+..
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            6666666666666666666666666666666666666666666666665543221  1334556666665544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=1.8e-21  Score=195.96  Aligned_cols=148  Identities=18%  Similarity=0.172  Sum_probs=116.0

Q ss_pred             ccCCCCCChHHHHHHHc-CCHHHHHHHHhcCccchhhccC--CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328           12 ERNCFTSYAPLHLAALK-GDWDFARNFFNLNPEAVCVRIS--RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG   88 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~-g~~~~v~~ll~~~~~~~~~~~~--~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g   88 (570)
                      +..+..+.|+||.|+.. |+.++++.|++. +.+++.. +  ..|.||||+|+..|+.+++++|++  .|++++.+|..|
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gadvn~~d~~G  268 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANSLLACEFLLQ--NGANVNQADSAG  268 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTS
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCC
Confidence            33455567899999999 999999999875 5667766 5  789999999999999999999999  899999999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC---CccccccchhhHHHHHHH
Q 008328           89 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK---EEDLKEEDRIELLVAVID  164 (570)
Q Consensus        89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~  164 (570)
                      +||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.+.   +....+..+.|+++.+..
T Consensus       269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          269 RGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            999999999999999999999999987 799999999999999999999999998774   334455667777776544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=2.2e-21  Score=188.70  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=115.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccc-----hhhccCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccccccCCC
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEA-----VCVRISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~-----~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      ..++|+.|+..|+.+.++.+++.+...     ++.. |..|+||||+|+..   |+.+++++|++  .|++++.+|..|+
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~in~~d~~g~  206 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhcccccc-ccCCCCcchHHHHhcccchHHHHHHHHH--CCCCccccCCCCC
Confidence            468999999999999999988764432     2222 78899999999999   89999999999  7999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCc
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE  148 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~  148 (570)
                      ||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999988 79999999999999999999999999999863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=1.6e-21  Score=163.08  Aligned_cols=106  Identities=27%  Similarity=0.367  Sum_probs=88.1

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |.+|+||||+|+..|+.+++++|++  .+++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~A   82 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLA   82 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            7788888888888888888888888  788888888888888888888888888888888888876 5788888888888


Q ss_pred             HHcCCHHHHHHHhhccCCccccccchhhH
Q 008328          130 ALLGHKEMIWYLYSVTKEEDLKEEDRIEL  158 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  158 (570)
                      +..|+.+++++|+++|++++.++..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            88888888888888888888777777665

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.3e-20  Score=150.92  Aligned_cols=93  Identities=23%  Similarity=0.333  Sum_probs=88.4

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328           87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG  166 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  166 (570)
                      +|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            58999999999999999999999999988 69999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhhCcc
Q 008328          167 LYDVALDLIQHHPQ  180 (570)
Q Consensus       167 ~~~~~~~Ll~~~~~  180 (570)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=2.5e-20  Score=155.70  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=102.0

Q ss_pred             ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHH
Q 008328           83 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus        83 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      .+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            478999999999999999999999999999987 6899999999999999999999999999999999999999999999


Q ss_pred             HHhCcHHHHHHHHhhCcccccccCCCCCcHH
Q 008328          163 IDAGLYDVALDLIQHHPQLAMARDGNGETAL  193 (570)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  193 (570)
                      +..++.+++++|+++|+++ +.++..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence            9999999999999999998 68899998873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=2.3e-18  Score=142.47  Aligned_cols=89  Identities=21%  Similarity=0.276  Sum_probs=74.5

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      |.+|+||||+|+..|+.+++++|++  .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A   97 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDIS   97 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHHHHH
Confidence            7788888888888888888888888  788888888888888888888888888888888888876 5788888888888


Q ss_pred             HHcCCHHHHHHH
Q 008328          130 ALLGHKEMIWYL  141 (570)
Q Consensus       130 ~~~g~~~~v~~L  141 (570)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            888888888776

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=1.3e-17  Score=137.96  Aligned_cols=95  Identities=21%  Similarity=0.206  Sum_probs=85.4

Q ss_pred             ccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhH
Q 008328           79 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL  158 (570)
Q Consensus        79 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  158 (570)
                      ..+...|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            3455678899999999999999999999999999988 689999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcHHHHHHH
Q 008328          159 LVAVIDAGLYDVALDL  174 (570)
Q Consensus       159 L~~A~~~~~~~~~~~L  174 (570)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	570
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 67/350 (19%), Positives = 118/350 (33%), Gaps = 46/350 (13%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM---- 76
           PLH+AA  G  + A+  + L  +A     +++  T LH AA    T  V+ L+       
Sbjct: 36  PLHMAARAGHTEVAK--YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93

Query: 77  ---------------------------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVN 109
                                           A   K G T L  AA  G  ++AE+++ 
Sbjct: 94  LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 153

Query: 110 KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD 169
           ++   P+  G  G TPL +A    + +++  L            +    L         +
Sbjct: 154 RDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 212

Query: 170 VALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPK 229
           VA  L+Q+    A A    G T LH+ A++       +++        +   +       
Sbjct: 213 VARSLLQYGGS-ANAESVQGVTPLHLAAQE-----GHAEMVALLLSKQANGNLGNKSGLT 266

Query: 230 LMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 289
            +HL A E    + + VL+     +    R     L  A   GN++ +   +  +   + 
Sbjct: 267 PLHLVAQEGHVPVAD-VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVN 324

Query: 290 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 339
                  S  H A       I  L+ + GA  +        +    L +A
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 75/397 (18%), Positives = 126/397 (31%), Gaps = 69/397 (17%)

Query: 21  PLHLAALKGDWDFARNFFNL--NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 78
           PLH+A+  G     +N      +P       +   +T LH+AA A  T   + L+     
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKA- 57

Query: 79  EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
             +  + K   T L  AA  G T + ++++  N   P++    G TPL +AA  GH E +
Sbjct: 58  -KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 115

Query: 139 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 198
             L      +    +     L      G   VA  L++       A   NG T LHV   
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVH 174

Query: 199 KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL 258
             +                                  L++VK L  +             
Sbjct: 175 HNN----------------------------------LDIVKLLLPR-----GGSPHSPA 195

Query: 259 RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELG 318
                 L  A +   VE    L+Q   +          +  H+A      ++  L+    
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 319 AHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGA-----------ALQLRRELHWF 365
           A+ +L     +++    LHL  +        + I  G             L +       
Sbjct: 255 ANGNL----GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 310

Query: 366 KEIE-KVVQPSYREAKNSEGRTP-HILFSEEHRRLVR 400
           K ++  +   +   AK   G +P H    + H  +V 
Sbjct: 311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
           PLHL A +G    A     +    +    +R   T LH+A+       V+ L+      +
Sbjct: 267 PLHLVAQEGHVPVAD--VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
              + K+G + L  AA  G T I  +++      P+   + G TPL +A  LG+  +   
Sbjct: 325 A--KTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDV 381

Query: 141 LYSVTKEE 148
           L  VT E 
Sbjct: 382 LKVVTDET 389

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 46/249 (18%), Positives = 73/249 (29%), Gaps = 46/249 (18%)

Query: 90  TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEED 149
           T L  A+  G   I + ++ +    P++   K  TPL MAA  GH E+  YL        
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYL-------- 52

Query: 150 LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209
                        +      V             A+  + +T LH  AR       G   
Sbjct: 53  -------------LQNK-AKV------------NAKAKDDQTPLHCAARI------GHTN 80

Query: 210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAV 269
                   +     A          A           LL  ++    + +K    L  A 
Sbjct: 81  MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 140

Query: 270 ELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKD 329
           + G V    +L++   +       +  +  H+AV H    I  L+   G           
Sbjct: 141 KYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS----PA 195

Query: 330 ENNNNMLHL 338
            N    LH+
Sbjct: 196 WNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 6/189 (3%)

Query: 11  VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 70
                +  Y PLH+AA +   + AR+   L         S    T LH+AA       V 
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSL--LQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

Query: 71  ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130
            L++     +L   NK G T L   A  G   +A+V++             G TPL +A+
Sbjct: 249 LLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVAS 305

Query: 131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE 190
             G+ +++ +L     + + K +     L      G  D+   L+++          +G 
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGT 364

Query: 191 TALHVLARK 199
           T L +  R 
Sbjct: 365 TPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 11  VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 70
           V+      Y PLH+A+  G+    +       +      ++   + LH AA    T  V 
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK--TKLGYSPLHQAAQQGHTDIVT 347

Query: 71  ELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEV 106
            L+           +  G T L  A   G   + +V
Sbjct: 348 LLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTDV 381

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.4 bits (148), Expect = 7e-11
 Identities = 41/274 (14%), Positives = 76/274 (27%), Gaps = 29/274 (10%)

Query: 21  PLHLAALKGDWDFARNFFNL-NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE 79
              +AA+ G          L   + +   I      A  +AA       +  L  L   E
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 80  DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS--IRGNKGATPLCMAALLGHKEM 137
            +A+       A   AA +G   +   +        +  I+          A   GH  +
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 212

Query: 138 IWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA 197
           I +L                  +   + G   V   + +H       R      A  +  
Sbjct: 213 INFLLD-------CPVMLAYAEIHEFEYGEKYVNPFIARHV-----NRLKEMHDAFKLSN 260

Query: 198 RKPS---AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI 254
                     S    GF+         +R            L+ ++ L     +   +  
Sbjct: 261 PDGVFDLVTKSECLQGFYMLR----NLIRRN------DEVLLDDIRFLLSIPGIKALAPT 310

Query: 255 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI 288
             +    + LL  A+ LGN     +L+   P+++
Sbjct: 311 ATIPGDANELLRLALRLGNQGACALLLS-IPSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.4 bits (140), Expect = 8e-10
 Identities = 39/220 (17%), Positives = 58/220 (26%), Gaps = 22/220 (10%)

Query: 2   LLLKCLKGGVERNCFTS--YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHI 59
            L   L          +  Y    LAA  G          L P  +   I      A  +
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 167

Query: 60  AAGARRTLFVQELVNL-MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELP--- 115
           AA       +  L  L  T     ++ +        A   G   +   +++    L    
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 227

Query: 116 ---SIRGNKGATPLCMAALLGHKEMIWYLYS---------VTKEEDLKEEDRIELLVAVI 163
                 G K   P     +   KEM               VTK E L+    +  L+   
Sbjct: 228 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 287

Query: 164 DAGLYDVALDLIQHHPQLAMARDG----NGETALHVLARK 199
           D  L D    L+      A+A       +    L +  R 
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 37/317 (11%), Positives = 84/317 (26%), Gaps = 36/317 (11%)

Query: 54  DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 113
           D  L +          Q  ++      + L  K     +       + ++ +++      
Sbjct: 13  DPQLRLIPWILWENLFQHFISANELSLMTLSYK-EAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 114 LPS----------IRGNKGATPLCMAALLGHKEMIWYL-YSVTKEEDLKE---EDRIELL 159
                         +G K      +AA+ G    +  L   +T +E +K    E+     
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 160 VAVIDAGLYDVALDLIQHHP-QLAMARDGNGETALHVLAR---------------KPSAF 203
           +A  + G   V   L +  P ++          A  + A                  +  
Sbjct: 132 LAAEN-GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

Query: 204 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSR 263
              ++  +  R      G   +++  L     L   +    +      +          +
Sbjct: 191 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 250

Query: 264 LLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 323
            +  A +L N + +  L+     L      +                   +  +   K L
Sbjct: 251 EMHDAFKLSNPDGVFDLVTKSECLQGF---YMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 307

Query: 324 I-ASYKDENNNNMLHLA 339
              +    + N +L LA
Sbjct: 308 APTATIPGDANELLRLA 324

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 6/175 (3%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
            LH A   G  +       L         +      LHIAA A R   V+ L+      +
Sbjct: 40  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP--LHIAASAGRDEIVKALLGKGAQVN 97

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
               N+ G T L +AA     +IA +++      P  + +  AT +  AA  G+ +MI  
Sbjct: 98  --AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHI 154

Query: 141 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
           L       ++++ +    L    D    + A  L+     +    +   +T L V
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 45/253 (17%)

Query: 87  VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK 146
           V N  +C  A SG  +  +  +  ++ L +       T L  A   GH E++ +L  +  
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 147 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASG 206
             + K++     L     AG  ++   L+    Q+  A + NG T LH  A K       
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNR----- 115

Query: 207 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLF 266
                                         E+   L E       +         +  + 
Sbjct: 116 -----------------------------HEIAVMLLEG-----GANPDAKDHYEATAMH 141

Query: 267 TAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIAS 326
            A   GN++ + +L+    +     D    +  H+A    + +   L+   GA   +   
Sbjct: 142 RAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI--- 197

Query: 327 YKDENNNNMLHLA 339
            +++     L +A
Sbjct: 198 -ENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 5/173 (2%)

Query: 22  LHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL 81
           +   A  G  +  +     +         ++  TALH A              L     +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWAC--SAGHTEIVEFLLQLGVPV 63

Query: 82  ALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
             ++  G + L  AA +G  +I + ++ K  ++ +     G TPL  AA     E+   L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 142 YSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 194
                  D K+      +      G   +   L+ +       +D  G T LH
Sbjct: 123 LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLH 174

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
           PLH AA K   + A     L   A        + TA+H AA       +  L+       
Sbjct: 106 PLHYAASKNRHEIAVML--LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL--YYKAS 161

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
             +++  GNT L  A      + A+++V++      I   +  TPL +A   G   ++  
Sbjct: 162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAK-GGLGLILKR 219

Query: 141 L 141
           +
Sbjct: 220 M 220

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 88  GNTALCFAAVSGVTKIAEVMVNK--NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT 145
           G+TAL  A +       + ++      E   ++ + G T L +AA+LG    +  LY+  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 146 KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ---------LAMARDGNGETALHVL 196
               + E      L        +  A  L+Q  P          L  ++D   +T+    
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 197 ARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE 256
           A          +          +           +H+  +     +   +          
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 257 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 316
                   L  AVE      L +L++   +         R+    A++     +  L+  
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 317 LGAHKD 322
            GA + 
Sbjct: 247 HGAPEP 252

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 11  VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQ 70
            ER        L  AA KG  +  +   +     V    +  ++  +H    +  +    
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 71  ELVNLMTPE-DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129
               L+    D+ +R + G T L  A       + + ++ +     +   + G T L +A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 130 ALLGHKEMIWYL 141
             L  K++   L
Sbjct: 261 VELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 58/307 (18%), Positives = 99/307 (32%), Gaps = 32/307 (10%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
            L  A    D D  +         V  +      T LH A    R   V+  + L    D
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVE--LLLRHGAD 64

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
             LR K G T    AA++G  K+ ++ ++K  +  +     G T    AA+ G  + + +
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 141 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200
           LY      +L+                            +        G TAL   A K 
Sbjct: 124 LYKRGANVNLRR------------------------KTKEDQERLRKGGATALMDAAEKG 159

Query: 201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK 260
                   L      + +   M        +       V+ +    LL   + +     +
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL-LLDHGADVNVRGER 218

Query: 261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGA- 319
               L  AVE  ++  +  L++     I   D   ++   +AV  + +KI  L+ + GA 
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 320 --HKDLI 324
               DL+
Sbjct: 279 TDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 19/196 (9%)

Query: 13  RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQEL 72
           +     + PLH A      D          + V  + +      L   AG+ + L +   
Sbjct: 34  QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 73  VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV---------NKNRELPSIRGNKGA 123
                 E     +  G TA   AAV G  K  + +           K +E        GA
Sbjct: 94  KGADVNE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 124 TPLCMAALLGHKEMIWYLYS-----VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178
           T L  AA  GH E++  L       V   +++     I  L++  D+ +  +   L+ H 
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 179 PQLAMARDGNGETALH 194
             +   R   G+T L 
Sbjct: 210 ADV-NVRGERGKTPLI 224

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 8e-05
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 14  NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV 73
                  P  LAA+ G     + F +   +           TA   AA   +   ++ L 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 74  NLM--------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATP 125
                      T ED     K G TAL  AA  G  ++ ++++++     +   N G   
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 126 LCMAAL----LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
           L  A L       + +   L     + +++ E     L+  ++     +   L++     
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 182 AMARDGNGETALHVLARK 199
               D +G+TAL +    
Sbjct: 246 INDTDSDGKTALLLAVEL 263

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 33/298 (11%), Positives = 87/298 (29%), Gaps = 49/298 (16%)

Query: 54  DTALHIAAGARRTLFVQEL-----VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
           ++ + +   A  +  + E      VN++ P           T L + A +   + +E ++
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRH-------NRTVLHWIASNSSAEKSEDLI 53

Query: 109 NKNREL-------PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA 161
               +         +       TPL +A L   + ++ YL     +  +  +     L  
Sbjct: 54  VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 113

Query: 162 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG 221
                 + + + ++                                              
Sbjct: 114 AAANRDFGMMVYMLNSTKLKGD--------------------------IEELDRNGMTAL 147

Query: 222 MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI 281
           M    +     + + +L+     +V     ++      K    L  A ++ N+  +  L+
Sbjct: 148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 207

Query: 282 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 339
               +   K D+  ++   +A    + ++   + + GA  +      D  ++    LA
Sbjct: 208 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 11/150 (7%)

Query: 1   MLLLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD------ 54
           ML    LKG +E         L + A     D   +   L  +   V             
Sbjct: 126 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 185

Query: 55  ---TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN 111
              TALH AA       V+  +      +   +++ G T +  AA  G  ++   ++ + 
Sbjct: 186 KGRTALHYAAQVSNMPIVKY-LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 112 RELPSIRGNKGATPLCMAALLGHKEMIWYL 141
                       T   +A    H  ++   
Sbjct: 245 AS-VEAVDATDHTARQLAQANNHHNIVDIF 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 40/252 (15%), Positives = 78/252 (30%), Gaps = 19/252 (7%)

Query: 88  GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
                  A  SG T+    ++ +  +  +     G T L  A +  + +M+ +L      
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 148 EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS 207
            +  + +    L A    G  D+A  LI        A +  G+T L +   +        
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEE-------- 149

Query: 208 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFT 267
                   +      R  +D +    +   ++ R   Q L           +     L  
Sbjct: 150 ----AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205

Query: 268 AVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASY 327
           A   G  E L +LIQ   + +   D    +  H A    +E+   ++ E     +     
Sbjct: 206 AAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA---- 260

Query: 328 KDENNNNMLHLA 339
            ++       +A
Sbjct: 261 VNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 104 AEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI 163
           A   +N            G T L +AA  G+ E++  L     + ++K+ D    L A  
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240

Query: 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
             G  +    L+++   +  A +  G+TA  V    
Sbjct: 241 HWGKEEACRILVENLCDM-EAVNKVGQTAFDVADED 275

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 13/139 (9%)

Query: 4   LKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--------- 54
           L  L   +      +   LH   +               + +   I + Q+         
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 222

Query: 55  --TALHIAAGARRTLFVQEL-VNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKN 111
             +  +   G R+   ++ L +  +    L  ++  G+T L  AA  G   I + +++  
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 112 RELPSIRGNKGATPLCMAA 130
            + P I    G  P+   A
Sbjct: 283 AD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 35/296 (11%), Positives = 80/296 (27%), Gaps = 34/296 (11%)

Query: 50  SRNQDTALHIAAGARRTLFVQELVNLMTPEDL---ALRNKVGNTALCFAAVSGVTKIAEV 106
              Q   L           +QE+   +  +     +            +  S + ++ + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 107 MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV---TKEEDLKEEDRIELLVAVI 163
             N    L       G TPL     + + E++ +L          D   E  +   V  +
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

Query: 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMR 223
           +         L+ +     +  D    T LH +                  C  +     
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHII----------ITSGMTGCSAAAKYYL 201

Query: 224 AILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM 283
            IL   ++  Q   +     E+    +D                     ++   + L  +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD--------------SILENLDLKWI 247

Query: 284 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 339
             N++   D +  +  +IA       I + + + GA   +     +++    +   
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 25/180 (13%)

Query: 38  FNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA-- 95
            NLN     + +  + +T LH          V+ LV   +  +    + +G + L  A  
Sbjct: 97  LNLN-----IPVDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVK 149

Query: 96  -AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED 154
              +  +   E +++       +  +   T L    +               +  +    
Sbjct: 150 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 209

Query: 155 RIELLVAVIDAGLYDVALDLIQHHPQLAM---------------ARDGNGETALHVLARK 199
           + +           +   +      + ++               A+D NG+T L++ AR 
Sbjct: 210 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 5/179 (2%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
            LHLAA     D A+   +   +A     +        +AA A     +           
Sbjct: 26  SLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN- 84

Query: 81  LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWY 140
                    T     A     +     +       +   N G T L  AA + + E +  
Sbjct: 85  ---ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI 141

Query: 141 LYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
           L       D +++     L      G Y+ +  L+ +        D        V + +
Sbjct: 142 LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASER 199

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 22/195 (11%), Positives = 50/195 (25%), Gaps = 4/195 (2%)

Query: 54  DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 113
           +  LH A        VQEL++   P  L  +++ G   L ++      +I   +++K   
Sbjct: 1   NYPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 114 LPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 173
           +        +             +        +             V  +   +     +
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 174 ---LIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL 230
               +  +      +D   +  LH  A   S        G  +  +              
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 231 MHLQALELVKRLWEQ 245
           +     +    L E+
Sbjct: 180 LAEGHGDAAVLLVEK 194

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 3/183 (1%)

Query: 21  PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA--GARRTLFVQELVNLMTP 78
           PLH A ++ ++   +   +  P  +  +  ++    LH +    A               
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 79  EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
            D    +          +V  +  +  +     +   +   N+G T L +A      E+ 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 139 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 198
            +L        +K++     L      G   +   L          +D  G T L     
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 199 KPS 201
           +  
Sbjct: 182 EGH 184

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 3/201 (1%)

Query: 1   MLLLKCLKGGVERNCFTSY--APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALH 58
            L+    +GG E + + +    PLHLA +       R         + +         L 
Sbjct: 21  RLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA 80

Query: 59  IAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIR 118
               +   L            DL  RN  G TAL  A  +   +  ++++ +  ++ ++ 
Sbjct: 81  CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 140

Query: 119 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178
              G +PL  A       M+  L       + +       L +    GL  +   L++  
Sbjct: 141 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 200

Query: 179 PQLAMARDGNGETALHVLARK 199
                 ++ + +T L V   +
Sbjct: 201 ADS-SLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 39/282 (13%), Positives = 70/282 (24%), Gaps = 60/282 (21%)

Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
           G TPL +A + G+   +  L                              ++L Q   + 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRL------------------------------VNLFQQGGRE 32

Query: 182 AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKR 241
               +   +T LH+                                  L          R
Sbjct: 33  LDIYNNLRQTPLHLAVITTLPSVVRLL--VTAGASPMALDRHGQTAAHLACEHRSPTCLR 90

Query: 242 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI 301
                       +          L  AV     E + +L++   ++        RS    
Sbjct: 91  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 150

Query: 302 AVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQLR 359
           AV +    +  L+ + GA+ +     +  + ++ LH A         R  + SGA     
Sbjct: 151 AVENNSLSMVQLLLQHGANVN----AQMYSGSSALHSASGRGLLPLVRTLVRSGADS--- 203

Query: 360 RELHWFKEIEKVVQPSYREAKNSEGRTP-HILFSEEHRRLVR 400
                               KN    TP  +  S     ++R
Sbjct: 204 ------------------SLKNCHNDTPLMVARSRRVIDILR 227

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 23/218 (10%), Positives = 57/218 (26%), Gaps = 34/218 (15%)

Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
           G + L +A +   K +   +                              +  ++     
Sbjct: 2   GDSFLHLAIIHEEKALTMEV------------------------------IRQVKGDLAF 31

Query: 182 AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKR 241
              ++   +T LH+         + + LG               L           +   
Sbjct: 32  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 91

Query: 242 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHI 301
                     S +          L  A   G +  + +L+ +  ++  +   + R+  H+
Sbjct: 92  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 151

Query: 302 AVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA 339
           AV  +   + +L+ + GA  +           +   L 
Sbjct: 152 AVDLQNPDLVSLLLKCGADVNR----VTYQGYSPYQLT 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	570
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-48  Score=398.98  Aligned_cols=339  Identities=20%  Similarity=0.205  Sum_probs=295.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHc
Q 008328           19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS   98 (570)
Q Consensus        19 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~   98 (570)
                      .||||+||..|+.++|++|++. +.+++.+ |..|+||||+|++.|+.+++++|++  +|++++.+|.+|+||||+|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~--~gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--CcCCCCCCCCCCCCHHHHHHHc
Confidence            4999999999999999999986 5678877 8999999999999999999999999  8999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCC--------------------------------CcCCCCCCcHHHHHHHcCCHHHHHHHhhccC
Q 008328           99 GVTKIAEVMVNKNRELP--------------------------------SIRGNKGATPLCMAALLGHKEMIWYLYSVTK  146 (570)
Q Consensus        99 g~~~iv~~Ll~~~~~~~--------------------------------~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~  146 (570)
                      |+.+++++|++.+++..                                ...+..+.++|+.|+..++.+++++|+++|+
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999998755432                                1357789999999999999999999999999


Q ss_pred             CccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCc--cchh
Q 008328          147 EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP--GMRA  224 (570)
Q Consensus       147 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  224 (570)
                      +++..+.+|.+|||+|+..|+.+++++|+++|+++ +..+..|.||+|.+....+       .+..+.++....  ...+
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~  228 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAES  228 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCC
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhccch-------hhhhhhhhhccccccccC
Confidence            99999999999999999999999999999999987 6889999999999998874       566666654443  3355


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHH
Q 008328          225 ILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV  304 (570)
Q Consensus       225 ~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (570)
                      ..+.+|+|.++......+++. ....+...+..+..|.|||+.|++.++.+++++|+++|++ .+..+..+.||||.|+.
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~  306 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASH  306 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHhHhhh-hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcc
Confidence            677899999886555444443 3445778888899999999999999999999999999999 66778999999999999


Q ss_pred             hCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc--ccCCchhhhhhHhhhhHHHhhhhcCchhhhhhcc
Q 008328          305 HRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL--KIDSGAALQLRRELHWFKEIEKVVQPSYREAKNS  382 (570)
Q Consensus       305 ~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~  382 (570)
                      .++.++++++++.|++++    .+|.+|+||||+|++.|+.+.+  ++..|                     ++++.+|+
T Consensus       307 ~~~~~~~~~ll~~g~~in----~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G---------------------Ad~n~~d~  361 (408)
T d1n11a_         307 YGNIKLVKFLLQHQADVN----AKTKLGYSPLHQAAQQGHTDIVTLLLKNG---------------------ASPNEVSS  361 (408)
T ss_dssp             SSCSHHHHHHHHTTCCTT----CCCTTSCCHHHHHHHTTCHHHHHHHHHTT---------------------CCSCCCCS
T ss_pred             cCcceeeeeecccccccc----ccCCCCCCHHHHHHHcCCHHHHHHHHHCC---------------------CCCCCCCC
Confidence            999999999999999987    4999999999999999886532  23333                     34589999


Q ss_pred             CCCCcchhhhhhhh
Q 008328          383 EGRTPHILFSEEHR  396 (570)
Q Consensus       383 ~G~Tpl~~a~~~~~  396 (570)
                      +|+||||+|.+...
T Consensus       362 ~G~t~L~~A~~~~~  375 (408)
T d1n11a_         362 DGTTPLAIAKRLGY  375 (408)
T ss_dssp             SSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCC
Confidence            99999999988754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-44  Score=369.98  Aligned_cols=325  Identities=20%  Similarity=0.197  Sum_probs=288.1

Q ss_pred             cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHcc---------
Q 008328            6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM---------   76 (570)
Q Consensus         6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~---------   76 (570)
                      ..|+++|..|..|+||||+||..|+.+++++||++ +.+++.+ |.+|+||||+|+..|+.+++++|++..         
T Consensus        21 ~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~   98 (408)
T d1n11a_          21 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA   98 (408)
T ss_dssp             HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccccc
Confidence            45889999999999999999999999999999986 5677777 899999999999999999999999731         


Q ss_pred             ----------------------CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           77 ----------------------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        77 ----------------------~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                                            .+...+..|..+.++++.|+..++.++++.|+++|.+++ ..+.+|.+|||+|+..|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~  177 (408)
T d1n11a_          99 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNN  177 (408)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTC
T ss_pred             ccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCcCchHHHHHHHcCC
Confidence                                  112345567889999999999999999999999999987 689999999999999999


Q ss_pred             HHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhh
Q 008328          135 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR  214 (570)
Q Consensus       135 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~  214 (570)
                      .+++++|+++|++++..+..|.||+|.++...+.+....++...... ...+.+|.||||+|+..++       .++++.
T Consensus       178 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~t~l~~a~~~~~-------~~~~~~  249 (408)
T d1n11a_         178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGH-------AEMVAL  249 (408)
T ss_dssp             HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC-------HHHHHH
T ss_pred             HHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc-cccCCCCCCHHHHHHHhCc-------HhHhhh
Confidence            99999999999999999999999999999999999999999988776 4788899999999999874       677777


Q ss_pred             hhhcCcc--chhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccccccc
Q 008328          215 CIYSVPG--MRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD  292 (570)
Q Consensus       215 l~~~~~~--~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d  292 (570)
                      +......  ..+..+.+|++.++......+++. +...+.+++..+..+.||||.++..++.++++.+++.|++ ++.+|
T Consensus       250 ~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~-Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d  327 (408)
T d1n11a_         250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV-LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKT  327 (408)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH-HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCC
T ss_pred             hhccccccccccCCCCChhhhhhhcCcHHHHHH-HHHCCCccccccccccccchhhcccCcceeeeeecccccc-ccccC
Confidence            7765444  446678899999886655444443 3456889999999999999999999999999999999999 67889


Q ss_pred             CCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          293 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       293 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      .+|+||||+|+++|+.++|++|+++|++++.    +|++|+||||+|++.|+.+.
T Consensus       328 ~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~----~d~~G~t~L~~A~~~~~~~i  378 (408)
T d1n11a_         328 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIAKRLGYISV  378 (408)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCSSSCCHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999999984    99999999999999998653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=291.65  Aligned_cols=220  Identities=18%  Similarity=0.166  Sum_probs=159.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV   97 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~   97 (570)
                      ++++|+.+|..|+.+.++.+|+.++..++.+ |.+|+||||+||..|+.+++++|++  .+.+....+..+.++++.|+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~--~~~~~~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--HTCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhhcccccccc--ccccccccccccccccccccc
Confidence            3567777777777777777777766666665 7777777777777777777777777  566666666677777777777


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328           98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      .|+.+++++|+++|++++ .+|.+|.||||+|+..|+.+++++|+++|++++.++.+|.||||+|+..++.+++++|++.
T Consensus        80 ~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            777777777777777765 5777777777777777777777777777777766666666666666666666666665555


Q ss_pred             CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhh
Q 008328          178 HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL  257 (570)
Q Consensus       178 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~  257 (570)
                      +.+                                                                         ++..
T Consensus       159 ~~~-------------------------------------------------------------------------i~~~  165 (223)
T d1uoha_         159 KAS-------------------------------------------------------------------------TNIQ  165 (223)
T ss_dssp             TCC-------------------------------------------------------------------------SCCC
T ss_pred             cce-------------------------------------------------------------------------eeec
Confidence            544                                                                         3444


Q ss_pred             ccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          258 LRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       258 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                      |..|.||||.|+..|+.++|++|+++|++ .+.+|.+|+||||+| ..|+.+++++|++
T Consensus       166 d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         166 DTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            45566666667777778889999999988 667788999999988 4688888888875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-37  Score=296.08  Aligned_cols=232  Identities=19%  Similarity=0.150  Sum_probs=155.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHH
Q 008328           50 SRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL  126 (570)
Q Consensus        50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpL  126 (570)
                      |++|+||||+||++|+.+++++|++  .|++   ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.+|.|||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~--~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~tpL   82 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTAL   82 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHH--cCCCcccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccchhh
Confidence            6788888888888888888888888  5655   66777888888888888888888888888888877 5888888888


Q ss_pred             HHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccC
Q 008328          127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASG  206 (570)
Q Consensus       127 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~  206 (570)
                      |+|+..|+.+++++|++.+........+..   ..                     ...+..+.+....+.....     
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~~-----  133 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTY---LT---------------------QSQDCTPDTSHAPAAVDSQ-----  133 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhh---hh---------------------HHhhhcccchHHHHHHHhh-----
Confidence            888888888888888876654322111000   00                     0000000010000000000     


Q ss_pred             CchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCc
Q 008328          207 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN  286 (570)
Q Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  286 (570)
                                                    ..............+.+++.+|.+|.||||+|++.|+.+++++|++.+++
T Consensus       134 ------------------------------~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~  183 (255)
T d1oy3d_         134 ------------------------------PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD  183 (255)
T ss_dssp             ----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ------------------------------cchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccc
Confidence                                          00000011112233566677778888888888888888888888888888


Q ss_pred             ccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      .....+..|+||||+|++.++.+++++|+++|++++.    +|.+|+||||+|++.++.+.
T Consensus       184 ~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~----~d~~g~t~L~~A~~~~~~~i  240 (255)
T d1oy3d_         184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA----RMYGGRTPLGSALLRPNPIL  240 (255)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHTSSCHHH
T ss_pred             ccccccccccccccccccccHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCCCHHH
Confidence            6666677888888888888888888888888888764    88888888888888877653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-37  Score=292.13  Aligned_cols=233  Identities=18%  Similarity=0.071  Sum_probs=165.8

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcC--ccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328           12 ERNCFTSYAPLHLAALKGDWDFARNFFNLN--PEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN   89 (570)
Q Consensus        12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~--~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~   89 (570)
                      +.-|++|+||||+||+.|+.+++++|++.+  ...++.+ |..|+||||+|+..|+.+++++|++  .|++++.+|.+|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~--~ga~i~~~d~~g~   79 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYA--AGAGVLVAERGGH   79 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCc-CCCCCCccchHHhhccccccccccc--ccccccccccccc
Confidence            456899999999999999999999999863  2335555 8999999999999999999999999  8999999999999


Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCC---------CCCcHHHHHHH---c-CCHHHHHHHhhccCCccccccchh
Q 008328           90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGN---------KGATPLCMAAL---L-GHKEMIWYLYSVTKEEDLKEEDRI  156 (570)
Q Consensus        90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------~g~TpLh~A~~---~-g~~~~v~~Ll~~g~~~~~~~~~g~  156 (570)
                      ||||+|+..|+.++++.|++.+.........         .+.+.+..+..   . ............+.+++.++.+|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            9999999999999999999876543311110         01111111110   0 011111222223344445555555


Q ss_pred             hHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHH
Q 008328          157 ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL  236 (570)
Q Consensus       157 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~  236 (570)
                      ||||+|+..++.+++++|++.+++...                                                     
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------------------------------  186 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNK-----------------------------------------------------  186 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTC-----------------------------------------------------
T ss_pred             ccccccccccccccccchhcccccccc-----------------------------------------------------
Confidence            555555555555555555555444321                                                     


Q ss_pred             HHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          237 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       237 ~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                                         ..+..|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|++
T Consensus       187 -------------------~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         187 -------------------PEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             -------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             -------------------cccccccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                               1234577777788888889999999999999 57789999999999999999999999999


Q ss_pred             hCch
Q 008328          317 LGAH  320 (570)
Q Consensus       317 ~g~~  320 (570)
                      +||+
T Consensus       247 ~Ga~  250 (255)
T d1oy3d_         247 HGAP  250 (255)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=288.76  Aligned_cols=266  Identities=21%  Similarity=0.233  Sum_probs=230.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328           17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA   96 (570)
Q Consensus        17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~   96 (570)
                      ++.|+||.|++.|+.++|+.|+++ +.+++.+.+..|+||||+|+..|+.+++++|++  .+.+.+..+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~--~~~~~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcc--ccccccccccccchhhHHHh
Confidence            467999999999999999999986 577877756789999999999999999999999  78999999999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCcccc----------ccchhhHHHHHHHhC
Q 008328           97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDAG  166 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~~  166 (570)
                      ..+..+.....+++..+.. ..+..|.|+++.|+..|+...++.+++...+++..          +..|.||||+|++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence            9999999999999987765 57899999999999999999999999887766543          345889999999999


Q ss_pred             cHHHHHHHHhh-CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHH
Q 008328          167 LYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQ  245 (570)
Q Consensus       167 ~~~~~~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~  245 (570)
                      +.+++++|+++ +.++ +..+..|.++++.+...+...   ..                           .++++.+   
T Consensus       160 ~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~---~~---------------------------~~i~~~L---  205 (285)
T d1wdya_         160 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDS---DV---------------------------EAITHLL---  205 (285)
T ss_dssp             CHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTT---TH---------------------------HHHHHHH---
T ss_pred             CHHHHHHHHhccCCCc-ccccCCCCcccccccccccch---HH---------------------------HHHHHHH---
Confidence            99999999976 5555 788999999988876654210   00                           1233333   


Q ss_pred             HHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328          246 VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM-YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL  323 (570)
Q Consensus       246 ~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~  323 (570)
                        ...+++++.+|..|.||||.|++.|+.+++++|++. |.+ ++.+|.+|+||||+|+++|+.+++++|+++|||+|.
T Consensus       206 --i~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         206 --LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             --HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             --HHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence              344888999999999999999999999999999985 667 678899999999999999999999999999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4e-37  Score=298.37  Aligned_cols=256  Identities=18%  Similarity=0.179  Sum_probs=167.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHc------cCcccccccccCCChHH
Q 008328           19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNL------MTPEDLALRNKVGNTAL   92 (570)
Q Consensus        19 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~------~~~~~~~~~d~~g~TpL   92 (570)
                      .||||++++.+..+.+..+|.+.+.  +...+.+|+||||+||..|+.++|+.|+..      ..|+|+|.+|.+|+|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~--n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTT--TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCC--CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            4899977776554444455554433  333245799999999999999988877542      16789999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc---CCccccccchhhHHHHHHHhCcHH
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT---KEEDLKEEDRIELLVAVIDAGLYD  169 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~  169 (570)
                      |+|++.|+.+++++|+++|++++ .+|.+|.|||++|+..++.++++.+...+   ..++..+..+.++.+.+...+..+
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             ccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            99999999999999999999987 68999999999999999999999888765   345566667777777777665433


Q ss_pred             ---HHHHHHhhCccc-------ccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHH
Q 008328          170 ---VALDLIQHHPQL-------AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELV  239 (570)
Q Consensus       170 ---~~~~Ll~~~~~~-------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~  239 (570)
                         .++.+.+.....       .+..+..|+||||+++..++       .                           +..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~-------~---------------------------~~~  203 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-------M---------------------------PIV  203 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-------H---------------------------HHH
T ss_pred             ccccccccccccccccccccccccccccCCCCcccccccccc-------c---------------------------ccc
Confidence               333333332111       12334455555555555543       1                           111


Q ss_pred             HHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328          240 KRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE  316 (570)
Q Consensus       240 ~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  316 (570)
                      +.    .+...+.+.+.+|..|.||||+|++.|+.++|++|+++|++ ++.+|.+|+||||+|+++|+.++|++|++
T Consensus       204 ~~----~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         204 KY----LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HH----HHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cc----ccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            11    11223444455555555666666666666666666666555 34455556666666666666666655553

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=278.49  Aligned_cols=208  Identities=17%  Similarity=0.189  Sum_probs=185.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328           53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL  132 (570)
Q Consensus        53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~  132 (570)
                      +++.|+.+|..|+.+.++.+++. .+.+++.+|.+|+||||+|+..|+.+++++|++.+.+.. ..+..+.++++.|+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~-~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHh-CCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-cccccccccccccccc
Confidence            46899999999999999888875 789999999999999999999999999999999998876 5778899999999999


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhh
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW  212 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  212 (570)
                      |+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|.++ +.+|.+|                       
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~-----------------------  136 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYE-----------------------  136 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTS-----------------------
T ss_pred             cccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCC-----------------------
Confidence            9999999999999999999999999999999999999999999888766 3444444                       


Q ss_pred             hhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccccccc
Q 008328          213 RRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVD  292 (570)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d  292 (570)
                                                                       .||||.|+..++.+++++|++.+.+ ++.+|
T Consensus       137 -------------------------------------------------~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d  166 (223)
T d1uoha_         137 -------------------------------------------------ATAMHRAAAKGNLKMIHILLYYKAS-TNIQD  166 (223)
T ss_dssp             -------------------------------------------------CCHHHHHHHTTCHHHHHHHHHTTCC-SCCCC
T ss_pred             -------------------------------------------------CccchhhhhcCCcchhhhhccccce-eeecc
Confidence                                                             4555555566667888999999999 67889


Q ss_pred             CCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhh
Q 008328          293 DHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAG  340 (570)
Q Consensus       293 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~  340 (570)
                      .+|+||||+|+..|+.+++++|+++|++++.    +|.+|+||||+|.
T Consensus       167 ~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~----~d~~g~tpl~~A~  210 (223)
T d1uoha_         167 TEGNTPLHLACDEERVEEAKLLVSQGASIYI----ENKEEKTPLQVAK  210 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHCC
T ss_pred             CCCCceeccccccCcHHHHHHHHHCCCCCCC----CCCCCCCHHHHHH
Confidence            9999999999999999999999999999985    9999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-35  Score=278.11  Aligned_cols=223  Identities=15%  Similarity=0.140  Sum_probs=169.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc---ccccCCChHHHHH
Q 008328           19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA---LRNKVGNTALCFA   95 (570)
Q Consensus        19 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~d~~g~TpLh~A   95 (570)
                      +||||+||+.|+.+.++.|++..+..++.+ |.+|+||||+|+..|+.+++++|++  .|++++   ..|..|.||+|++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHT--TCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccchhhh--hhcccccccccccccccccccc
Confidence            478888888888888888887777777666 7888888888888888888888888  677765   3456777888888


Q ss_pred             HHcCcHHHHHHHHhcCCCCC-CcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328           96 AVSGVTKIAEVMVNKNRELP-SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~-~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      +..+..++++.++..+.... ...+..+.||++.++..++.+++++|++.|.+.+..+.+|.||||+|+..|+.++++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            88888888888777766432 23567778888888888888888888888877777777777777777777777777777


Q ss_pred             HhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccch
Q 008328          175 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  254 (570)
Q Consensus       175 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~  254 (570)
                      ++.++...+.+                                                                     
T Consensus       158 l~~~~~~in~~---------------------------------------------------------------------  168 (229)
T d1ixva_         158 CGLGKSAVNWQ---------------------------------------------------------------------  168 (229)
T ss_dssp             HTTTCCCSCCC---------------------------------------------------------------------
T ss_pred             ccccccccccc---------------------------------------------------------------------
Confidence            77654433334                                                                     


Q ss_pred             hhhccCCChHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCch
Q 008328          255 GELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  320 (570)
Q Consensus       255 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~  320 (570)
                         |.+|.||||+|+..|+.+++++|++ .|++ ++.+|.+|+||||+|+.   .+++++|+++|+|
T Consensus       169 ---d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         169 ---DKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             ---CTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ---ccccCCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence               4445566666666677888999886 4888 56779999999999883   5788999999886

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.3e-36  Score=295.34  Aligned_cols=261  Identities=16%  Similarity=0.112  Sum_probs=207.9

Q ss_pred             HcCCHHHHHHHHhcCccchh-------hccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           27 LKGDWDFARNFFNLNPEAVC-------VRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        27 ~~g~~~~v~~ll~~~~~~~~-------~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      +....+.++.++........       .+.+.++.||||.||+.|+.++|++||+  .|+|+|.+|.+|.||||+|+..|
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~--~Gadvn~~d~~G~T~L~~A~~~g   84 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQACIDD   84 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHHHTT
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcHHHHHHhcC
Confidence            33445666666654322110       1112346799999999999999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCc
Q 008328          100 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP  179 (570)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  179 (570)
                      +.+++++|+++|++.. ..+..+.|||+.|+..++.++++.|+++|++.+..+.++.+++++|+..++.+.++.++....
T Consensus        85 ~~eiv~~Ll~~~~~~~-~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~  163 (291)
T d1s70b_          85 NVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (291)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             Cceeeeeecccccccc-cccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccc
Confidence            9999999999999876 678899999999999999999999999999999999999999999999999999888886533


Q ss_pred             ccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhcc
Q 008328          180 QLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR  259 (570)
Q Consensus       180 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~  259 (570)
                      .........+..+.+.                                              .....+.....+....+.
T Consensus       164 ~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         164 VDIEAARKEEERIMLR----------------------------------------------DARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CCHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHTCCCCCCCTT
T ss_pred             cccccccccccccccc----------------------------------------------cchhhhcccccccccccC
Confidence            2211111111111110                                              011111222344455677


Q ss_pred             CCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHh
Q 008328          260 KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLA  339 (570)
Q Consensus       260 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A  339 (570)
                      .|.||||.|+..|+.++++.|++.|++ ++.+|..|+||||+|+..|+.++|++|+++|+|++.    +|++|+||||+|
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~----~d~~G~TaL~~A  272 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAFDVA  272 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTTTSC
T ss_pred             CCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHH
Confidence            899999999999999999999999999 677899999999999999999999999999999985    999999999999


Q ss_pred             hh
Q 008328          340 GK  341 (570)
Q Consensus       340 ~~  341 (570)
                      ++
T Consensus       273 ~e  274 (291)
T d1s70b_         273 DE  274 (291)
T ss_dssp             CS
T ss_pred             HH
Confidence            75

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-36  Score=295.07  Aligned_cols=258  Identities=14%  Similarity=0.148  Sum_probs=205.0

Q ss_pred             CcHHHHHHh-cCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcHHHHHHH--------HhcCCCCCCcCCCCCC
Q 008328           54 DTALHIAAG-ARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVTKIAEVM--------VNKNRELPSIRGNKGA  123 (570)
Q Consensus        54 ~TpLh~A~~-~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~L--------l~~~~~~~~~~~~~g~  123 (570)
                      +||||+|++ .|+.++++.|.+  .+.  |..| ++|+||||+||..|+.++++.|        +++|++++ .+|.+|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~--~~~--n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~   75 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITR--ESV--NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDEN   75 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCST--TTT--TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSC
T ss_pred             CChHHHHHHhCCCHHHHHHHHh--cCC--CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-ccCCCCC
Confidence            489997665 466666666655  444  4444 4699999999999999988776        56789998 6899999


Q ss_pred             cHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc--cccccCCCCCcHHHHHHcCCC
Q 008328          124 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ--LAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       124 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      ||||+|+..|+.+++++|+++|++++.++.+|.||++.|+..++.++.+.+......  ..+..+..+.++.+.+...+.
T Consensus        76 TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
T d2fo1e1          76 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG  155 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS
T ss_pred             eeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999988776432  224678889999999887763


Q ss_pred             ccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHH
Q 008328          202 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLI  281 (570)
Q Consensus       202 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  281 (570)
                      ..    ....++.+.....                        ..........+..+..|.||||.++..++.++++.++
T Consensus       156 ~~----~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l  207 (277)
T d2fo1e1         156 RD----QVASAKLLVEKGA------------------------KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  207 (277)
T ss_dssp             TT----HHHHHHHHHHHTC------------------------CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             cc----ccccccccccccc------------------------cccccccccccccccCCCCcccccccccccccccccc
Confidence            21    1111111111000                        0001123445566778999999999999999999988


Q ss_pred             HhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc
Q 008328          282 QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL  348 (570)
Q Consensus       282 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~  348 (570)
                      .......+.+|..|+||||+|+..|+.+++++|+++|+|++.    +|.+|+||||+|++.|+.+.+
T Consensus       208 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~----~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         208 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----CCSSSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC----cCCCCCCHHHHHHHcCCHHHH
Confidence            766665778899999999999999999999999999999884    999999999999999986543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-34  Score=269.08  Aligned_cols=211  Identities=19%  Similarity=0.224  Sum_probs=175.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCC--cCCCCCCcHHHHHHH
Q 008328           54 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS--IRGNKGATPLCMAAL  131 (570)
Q Consensus        54 ~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~g~TpLh~A~~  131 (570)
                      +||||+||+.|+.++++.|++. .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++.  ..+..|.+|+|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH-CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            5899999999999999999986 6789999999999999999999999999999999988752  467889999999999


Q ss_pred             cCCHHHHHHHhhccCCcc--ccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328          132 LGHKEMIWYLYSVTKEED--LKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL  209 (570)
Q Consensus       132 ~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~  209 (570)
                      .+..++++.++..+.+.+  ..+..+.++++.++..++.++++.|++.+.+.                            
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~----------------------------  131 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV----------------------------  131 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS----------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc----------------------------
Confidence            999999999888886543  34455666666666666666666666655443                            


Q ss_pred             hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328          210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW  289 (570)
Q Consensus       210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  289 (570)
                                                                   +..|..|+||||.|+..|+.++++.|++.+++.++
T Consensus       132 ---------------------------------------------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in  166 (229)
T d1ixva_         132 ---------------------------------------------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN  166 (229)
T ss_dssp             ---------------------------------------------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSC
T ss_pred             ---------------------------------------------cccCCCCCCccchhhhccccccccccccccccccc
Confidence                                                         23344566777777788889999999999987788


Q ss_pred             cccCCCCchhHHHHHhCchHHHHHHHH-hCchhhhhhhhcccCCCcHHHHhhhh
Q 008328          290 KVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHLAGKL  342 (570)
Q Consensus       290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~  342 (570)
                      .+|.+|+||||+|+.+|+.+++++|++ .|++++.    +|.+|+||||+|++.
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~----~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALNE  216 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----CCTTSCCTGGGCSCH
T ss_pred             ccccccCCchhhhcccccHHHHHHHHHhcCCCCCC----cCCCCCCHHHHHhhH
Confidence            899999999999999999999999997 5999985    999999999999854

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=274.61  Aligned_cols=259  Identities=17%  Similarity=0.151  Sum_probs=220.6

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA  130 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~  130 (570)
                      +++|+||.|+++|+.++|++|++  .|+++|.++ ..|.||||+|+..|+.+++++|++.++... ..+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~--~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHH--CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-ccccccchhhHHHh
Confidence            46799999999999999999999  899999775 479999999999999999999999999877 57889999999999


Q ss_pred             HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccc---------cccCCCCCcHHHHHHcCCC
Q 008328          131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA---------MARDGNGETALHVLARKPS  201 (570)
Q Consensus       131 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~~~  201 (570)
                      ..+..+.....+++..+....+..+.++++.|+..++...++.+++...+..         ...+..|.||||+|++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC
Confidence            9999999999999998888888999999999999999999999988755431         3456779999999999875


Q ss_pred             ccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHH----cCcHHHH
Q 008328          202 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVE----LGNVEFL  277 (570)
Q Consensus       202 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v  277 (570)
                             .                           +.++.++    ...+.+++..+..|.++++.+..    .+..+++
T Consensus       161 -------~---------------------------~~~~~Ll----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (285)
T d1wdya_         161 -------V---------------------------EVLKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEAIT  202 (285)
T ss_dssp             -------H---------------------------HHHHHHH----HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHH
T ss_pred             -------H---------------------------HHHHHHH----hccCCCcccccCCCCcccccccccccchHHHHHH
Confidence                   2                           3333332    23578889999999988877655    3356799


Q ss_pred             HHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh-CchhhhhhhhcccCCCcHHHHhhhhCCCCcc--ccCCch
Q 008328          278 MVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHKDLIASYKDENNNNMLHLAGKLAPPDRL--KIDSGA  354 (570)
Q Consensus       278 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga  354 (570)
                      ++|+++|++ ++.+|..|+||||.|++.|+.+++++|++. |++++    .+|.+|+||||+|++.++.+.+  ++..||
T Consensus       203 ~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din----~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA  277 (285)
T d1wdya_         203 HLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT----CCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc----CCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999 567899999999999999999999999985 88887    4999999999999999987743  334555


Q ss_pred             hh
Q 008328          355 AL  356 (570)
Q Consensus       355 ~~  356 (570)
                      ++
T Consensus       278 d~  279 (285)
T d1wdya_         278 ST  279 (285)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.7e-33  Score=274.90  Aligned_cols=250  Identities=20%  Similarity=0.182  Sum_probs=204.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328           16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA   95 (570)
Q Consensus        16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A   95 (570)
                      .+|.||||.||..|+.++|++||++ +.+++.+ |.+|.||||+|+.+|+.+++++|++  ++.+.+..+..+.||||+|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~--~~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVE--NGANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCcHHHHHHhcCCceeeeeecc--ccccccccccccccccccc
Confidence            4467999999999999999999986 5678877 9999999999999999999999999  8999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc-cCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328           96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV-TKEEDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      +..|+.++++.|+++|.... ..|..|.+|+++|+..++.+.++.++.. +.++......+..+.+..       ....+
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~  185 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD-------ARQWL  185 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-------HHHHH
T ss_pred             ccccccchhhcccccCcccc-cccccCccccccccccccchhcccccccccccccccccccccccccc-------chhhh
Confidence            99999999999999998876 6899999999999999999999999864 444433333333333222       22233


Q ss_pred             HhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccch
Q 008328          175 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI  254 (570)
Q Consensus       175 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~  254 (570)
                      ....... ...+.+|.||||.|+..++       .+                           .++.+     ...++++
T Consensus       186 ~~~~~~~-~~~~~~g~t~L~~a~~~~~-------~~---------------------------~~~~L-----l~~g~di  225 (291)
T d1s70b_         186 NSGHIND-VRHAKSGGTALHVAAAKGY-------TE---------------------------VLKLL-----IQARYDV  225 (291)
T ss_dssp             HHTCCCC-CCCTTTCCCHHHHHHHHTC-------HH---------------------------HHHHH-----HTTTCCT
T ss_pred             ccccccc-ccccCCCCChhhHHHHcCC-------hh---------------------------hhccc-----ccceecc
Confidence            3333333 5778899999999999875       22                           23222     3458889


Q ss_pred             hhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          255 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       255 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                      +.++.+|.||||+|++.|+.++|++|+++|+| ++.+|.+|+||||+|++    +++++|.+.....|
T Consensus       226 n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEELQKKQN  288 (291)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHHHHHHHTT
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999 67889999999999975    68888877654433

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=248.83  Aligned_cols=218  Identities=19%  Similarity=0.205  Sum_probs=151.2

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcc--CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328           52 NQDTALHIAAGARRTLFVQELVNLM--TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA  129 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A  129 (570)
                      +|+||||+||+.|+.++++.|++..  .|++++.+|.+|+||||+|+..|+.++++.|+++|++.+ ..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccc-ccccccccccccc
Confidence            5788888888888888877776421  577888888888888888888888888888888888776 5777788888888


Q ss_pred             HHcCCHHHHHHHhhccCC----ccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCcccc
Q 008328          130 ALLGHKEMIWYLYSVTKE----EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFAS  205 (570)
Q Consensus       130 ~~~g~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~  205 (570)
                      ...++.++++.+......    .+.......++++.+.........+.|.....+..                       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-----------------------  137 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-----------------------  137 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-----------------------
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccc-----------------------
Confidence            888888777776654332    12222333344444444444433333333332221                       


Q ss_pred             CCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCC
Q 008328          206 GSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYP  285 (570)
Q Consensus       206 ~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  285 (570)
                                                                       ...+..|.+||+.|+..+..++++.+++.|.
T Consensus       138 -------------------------------------------------~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  168 (228)
T d1k1aa_         138 -------------------------------------------------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGA  168 (228)
T ss_dssp             -------------------------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             -------------------------------------------------cccccchhhHHHHHHHhhhhhhhhhhhhhcc
Confidence                                                             2233446677777777777788888888877


Q ss_pred             cccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328          286 NLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR  347 (570)
Q Consensus       286 ~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (570)
                      + .+.+|..|+||||+|+.+|+.+++++|+++|+|++.    +|.+|+||||+|+++++.+.
T Consensus       169 ~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~----~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         169 N-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             C-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHH
T ss_pred             c-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhCCCccc
Confidence            7 556688888888888888888888888888888774    78888888888887776543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=246.85  Aligned_cols=200  Identities=20%  Similarity=0.141  Sum_probs=161.8

Q ss_pred             cCCChHHHHHHHcCcHHHHHHHHh----cCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHH
Q 008328           86 KVGNTALCFAAVSGVTKIAEVMVN----KNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA  161 (570)
Q Consensus        86 ~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  161 (570)
                      ++|+||||+||..|+.++++.|++    .|++++ .+|..|+||||+|+..|+.+++++|+++|++.+..+..+.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            368999999999999998888874    678876 688899999999999999999999999998888888888888888


Q ss_pred             HHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHH
Q 008328          162 VIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKR  241 (570)
Q Consensus       162 A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~  241 (570)
                      |...++.++++..........                                                           
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  100 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGT-----------------------------------------------------------  100 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTS-----------------------------------------------------------
T ss_pred             ccccccccchhhhhhcccccc-----------------------------------------------------------
Confidence            888888877776665433211                                                           


Q ss_pred             HHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchh
Q 008328          242 LWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHK  321 (570)
Q Consensus       242 l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~  321 (570)
                                ...+.......+|||.+.........+.|.....+.....+..|.++||.|+..+..++++.+++.|.+.
T Consensus       101 ----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  170 (228)
T d1k1aa_         101 ----------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV  170 (228)
T ss_dssp             ----------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ----------ccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc
Confidence                      0111122335678888888888888999999888877778889999999999999999999999999988


Q ss_pred             hhhhhhcccCCCcHHHHhhhhCCCC--ccccCCchhhhhh
Q 008328          322 DLIASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQLR  359 (570)
Q Consensus       322 ~~~~n~~d~~G~TpLh~A~~~~~~~--~~~~~~ga~~~~~  359 (570)
                      +    .+|..|+||||+|++.|+.+  +.++..|++++.+
T Consensus       171 ~----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         171 N----AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             T----CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             c----cccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            7    49999999999999999987  3455667766654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-31  Score=250.08  Aligned_cols=198  Identities=21%  Similarity=0.265  Sum_probs=135.0

Q ss_pred             CCCcHHHHHHhcCCHHHH----HHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328           52 NQDTALHIAAGARRTLFV----QELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC  127 (570)
Q Consensus        52 ~g~TpLh~A~~~g~~~~v----~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh  127 (570)
                      +|+||||+|+..|+.+++    +.+..  .++++|.+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~--~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHh--CCCCcccCCCCCCcccccccccccccccccccccccccc-ccccccccccc
Confidence            477888888888875444    34444  577788888888888888888888888888888888876 57888888888


Q ss_pred             HHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCC
Q 008328          128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS  207 (570)
Q Consensus       128 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~  207 (570)
                      +|+..|+.++++.|++.+.+.....                            .......+|.||||.|+..++      
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~~~~~~~~~~t~l~~a~~~~~------  123 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHS----------------------------ILKATNYNGHTCLHLASIHGY------  123 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSC----------------------------GGGCCCTTCCCHHHHHHHTTC------
T ss_pred             cccccccccccchhhhhcccccccc----------------------------cccccccccchhhhHHhhcCC------
Confidence            8888888888888887765432211                            112333445555555555442      


Q ss_pred             chhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhh-ccCCChHHHHHHHcCcHHHHHHHHHhCCc
Q 008328          208 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGEL-LRKPSRLLFTAVELGNVEFLMVLIQMYPN  286 (570)
Q Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  286 (570)
                       .+.                           ++.++.     .+..++.. +.+|.||||+|++.|+.+++++|+++|+|
T Consensus       124 -~~~---------------------------~~~l~~-----~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad  170 (221)
T d1iknd_         124 -LGI---------------------------VELLVS-----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD  170 (221)
T ss_dssp             -HHH---------------------------HHHHHH-----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             -hhh---------------------------eeeecc-----cCcccccccccCCCCccccccccccHHHHHHHHhcCCc
Confidence             111                           111111     12222222 23477788888888888999999999998


Q ss_pred             ccccccCCCCchhHHHHHhCchHHHHHHHHhCch
Q 008328          287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH  320 (570)
Q Consensus       287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~  320 (570)
                       ++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       171 -~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         171 -VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             -SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             -ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence             677899999999999999999999999888655

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-31  Score=246.29  Aligned_cols=188  Identities=15%  Similarity=0.131  Sum_probs=160.2

Q ss_pred             CCChHHHHHHHcCcHH----HHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHH
Q 008328           87 VGNTALCFAAVSGVTK----IAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus        87 ~g~TpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      +|+||||+|+..|+.+    +++.+..++++++ .+|.+|+||||+|+..|+.+++++|+++|++++..|.+|.|||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            6999999999999864    4556667788887 6899999999999999999999999999999999999999999999


Q ss_pred             HHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHH
Q 008328          163 IDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRL  242 (570)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l  242 (570)
                      +..++.++++.|++.+.....                                                           
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~-----------------------------------------------------------  100 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHL-----------------------------------------------------------  100 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS-----------------------------------------------------------
T ss_pred             cccccccccchhhhhcccccc-----------------------------------------------------------
Confidence            999999999999887654310                                                           


Q ss_pred             HHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328          243 WEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD  322 (570)
Q Consensus       243 ~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~  322 (570)
                              ..........|.||||.|+..++.+++++|++.|++.....+.+|+||||+|+..|+.+++++|+++|+|++
T Consensus       101 --------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~  172 (221)
T d1iknd_         101 --------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN  172 (221)
T ss_dssp             --------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             --------cccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc
Confidence                    111222334588999999999999999999999999777777889999999999999999999999999998


Q ss_pred             hhhhhcccCCCcHHHHhhhhCCCC
Q 008328          323 LIASYKDENNNNMLHLAGKLAPPD  346 (570)
Q Consensus       323 ~~~n~~d~~G~TpLh~A~~~~~~~  346 (570)
                      .    +|.+|+||||+|++.++.+
T Consensus       173 ~----~~~~G~tpl~~A~~~~~~~  192 (221)
T d1iknd_         173 R----VTYQGYSPYQLTWGRPSTR  192 (221)
T ss_dssp             C----CCTTCCCGGGGCTTSSCHH
T ss_pred             c----cCCCCCCHHHHHHHCCCHH
Confidence            5    9999999999999988654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.97  E-value=2.2e-33  Score=280.30  Aligned_cols=238  Identities=13%  Similarity=0.029  Sum_probs=159.3

Q ss_pred             hhhccCCCCCcHHHHHHhcCCHHHHHH---HHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCc-CCC
Q 008328           45 VCVRISRNQDTALHIAAGARRTLFVQE---LVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSI-RGN  120 (570)
Q Consensus        45 ~~~~~~~~g~TpLh~A~~~g~~~~v~~---Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~  120 (570)
                      ++.+ +..|.||||+||++|+.+++++   |++  .|++++.+|.+|.||||+||++|+.++|++|+++|++++.. .+.
T Consensus        83 ~~~~-~~~~~t~L~~Aa~~g~~~~~~~~~~L~~--~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~  159 (346)
T d2ajaa1          83 AHKK-GIKSEVICFVAAITGCSSALDTLCLLLT--SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA  159 (346)
T ss_dssp             HHHH-TCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred             HHhc-cCCCCcHHHHHHHhCCHHHHHHHHHHHh--CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc
Confidence            3444 7788899999999998877665   666  78888888888899999999999999999999988887632 234


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhhccCCc---cccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHH
Q 008328          121 KGATPLCMAALLGHKEMIWYLYSVTKEE---DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLA  197 (570)
Q Consensus       121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~  197 (570)
                      +|.||||+|+.+||.++|++|++.|++.   +..+.++.||++.|+++|+.+++++|++.|++..        +|.+.+.
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~--------~~~~~~~  231 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--------YAEIHEF  231 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH--------HHHHCTT
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc--------hHHHHHH
Confidence            6888999999999999999999888754   3445667788888888899999999988877652        2333333


Q ss_pred             cCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhc-Ccc-------chhhhccCCChHHHHHH
Q 008328          198 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLL-DDS-------KIGELLRKPSRLLFTAV  269 (570)
Q Consensus       198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~-~~~-------~~~~~d~~g~tpLh~A~  269 (570)
                      ..++       .++.+.+                 .............+... .+.       +.......+.++++.|+
T Consensus       232 ~~~~-------~~~~~~~-----------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~  287 (346)
T d2ajaa1         232 EYGE-------KYVNPFI-----------------ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN  287 (346)
T ss_dssp             TTTT-------TTHHHHH-----------------HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HcCc-------HhhhHHH-----------------HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHh
Confidence            3221       1111111                 00000000000000000 000       00111122457899999


Q ss_pred             HcCcHHHHHHHHHhCCccc----ccccCCCCchhHHHHHhCchHHHHHHHHh
Q 008328          270 ELGNVEFLMVLIQMYPNLI----WKVDDHSRSMFHIAVVHRQEKIFNLIYEL  317 (570)
Q Consensus       270 ~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  317 (570)
                      ..|+.+++++|++.+....    ...+.+|+||||+|++.|+.++|++|++.
T Consensus       288 ~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            9999999999998776422    23456799999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.1e-29  Score=232.93  Aligned_cols=204  Identities=22%  Similarity=0.238  Sum_probs=120.4

Q ss_pred             HHHHHHHHccCcccccc-cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc
Q 008328           67 LFVQELVNLMTPEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT  145 (570)
Q Consensus        67 ~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g  145 (570)
                      |+|++|++  +|+|++. .|.+|+||||+||+.|+.+++++|++.|++++ .++..+.++++.++..++.+.........
T Consensus         3 ~~v~~Ll~--~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHH--CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-ccccccccccccccccccccccccccccc
Confidence            45555555  4555554 34555555555555555555555555555544 34555555555555555544444433332


Q ss_pred             C-CccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchh
Q 008328          146 K-EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRA  224 (570)
Q Consensus       146 ~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~  224 (570)
                      . ........+.++.+.+.........+.|.+.+.++ +.++..|+|||+.++..+.       .+              
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~-------~~--------------  137 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNN-------TE--------------  137 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC-------HH--------------
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCc-------ce--------------
Confidence            2 12223333444555555555555555555555544 3455556666666655542       11              


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHH
Q 008328          225 ILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVV  304 (570)
Q Consensus       225 ~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (570)
                                   .++.     +...+.+++..|.+|.||||+|+..|+.++++.|+++|+| ++.+|.+|+||||+|++
T Consensus       138 -------------~~~~-----l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~  198 (209)
T d1ot8a_         138 -------------AVNI-----LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASE  198 (209)
T ss_dssp             -------------HHHH-----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             -------------eeee-----eccccccccccccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence                         1111     1122444555666778888888888889999999999999 56779999999999999


Q ss_pred             hCchHHHHHH
Q 008328          305 HRQEKIFNLI  314 (570)
Q Consensus       305 ~~~~~iv~~L  314 (570)
                      +|+.++|++|
T Consensus       199 ~~~~~iv~lL  208 (209)
T d1ot8a_         199 RLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHhhc
Confidence            9999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.7e-30  Score=238.02  Aligned_cols=204  Identities=19%  Similarity=0.188  Sum_probs=178.6

Q ss_pred             HHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328          101 TKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ  180 (570)
Q Consensus       101 ~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  180 (570)
                      .|+|++|+++|++++...|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++.+...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            58999999999998755689999999999999999999999999999999999999999999999999888877777666


Q ss_pred             cccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccC
Q 008328          181 LAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRK  260 (570)
Q Consensus       181 ~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~  260 (570)
                      .....+..|.++.+.+......       .                           ..     ..+...+.+++..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~-------~---------------------------~~-----~~L~~~~~~~~~~~~~  122 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIE-------G---------------------------MV-----EDLITADADINAADNS  122 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCT-------T---------------------------HH-----HHHHHTTCCTTCBCTT
T ss_pred             ccccccccccccccccccccch-------h---------------------------hh-----hhhhhhcccccccCCC
Confidence            6566777888998888776531       1                           11     2233457888889999


Q ss_pred             CChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhh
Q 008328          261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAG  340 (570)
Q Consensus       261 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~  340 (570)
                      |.|||+.++..+..++++.+++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+|++.    +|.+|+||||+|+
T Consensus       123 ~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~----~d~~g~Tpl~~A~  197 (209)
T d1ot8a_         123 GKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFANREI----TDHMDRLPRDVAS  197 (209)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHH
T ss_pred             CCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCCCCCC----cCCCCCCHHHHHH
Confidence            99999999999999999999999999 567799999999999999999999999999999884    9999999999999


Q ss_pred             hhCCCCcc
Q 008328          341 KLAPPDRL  348 (570)
Q Consensus       341 ~~~~~~~~  348 (570)
                      +.|+.+.+
T Consensus       198 ~~~~~~iv  205 (209)
T d1ot8a_         198 ERLHHDIV  205 (209)
T ss_dssp             HTTCHHHH
T ss_pred             HcCCHHHH
Confidence            99987544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=5.5e-31  Score=262.80  Aligned_cols=239  Identities=12%  Similarity=0.020  Sum_probs=173.7

Q ss_pred             ccccccccCCChHHHHHHHcCcHHHHHH---HHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc--c
Q 008328           79 EDLALRNKVGNTALCFAAVSGVTKIAEV---MVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--E  153 (570)
Q Consensus        79 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~---Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~--~  153 (570)
                      .+++.+|..|.||||+|+++|+.+++++   |++.|++++ .+|.+|.||||+||++||.++|++|+++|++++..+  .
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~  159 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA  159 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc
Confidence            4556678899999999999999887765   789999988 689999999999999999999999999999998876  4


Q ss_pred             chhhHHHHHHHhCcHHHHHHHHhhCcccc--cccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhh
Q 008328          154 DRIELLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLM  231 (570)
Q Consensus       154 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  231 (570)
                      +|.||||+|+++|+.+++++|++.+++..  +..+.+|.||+|.|+++|       +.++++.|++.+.+....     .
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g-------~~~iv~~Ll~~ga~~~~~-----~  227 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG-------HHNVINFLLDCPVMLAYA-----E  227 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC-------CHHHHHHHTTSHHHHHHH-----H
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcC-------HHHHHHHHHhCCCCcchH-----H
Confidence            69999999999999999999999997652  344566788889999888       477888877654322100     0


Q ss_pred             HHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccc-ccc-------cCCCCchhHHHH
Q 008328          232 HLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI-WKV-------DDHSRSMFHIAV  303 (570)
Q Consensus       232 h~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~-------d~~g~t~Lh~A~  303 (570)
                                          .........+.++++.++..+..+....+....++.. ...       ...+.++++.|+
T Consensus       228 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~  287 (346)
T d2ajaa1         228 --------------------IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN  287 (346)
T ss_dssp             --------------------HCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC
T ss_pred             --------------------HHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHh
Confidence                                0000112234466777666666665555544333211 111       122457899999


Q ss_pred             HhCchHHHHHHHHhCchhhhh-hhhcccCCCcHHHHhhhhCCCCcccc
Q 008328          304 VHRQEKIFNLIYELGAHKDLI-ASYKDENNNNMLHLAGKLAPPDRLKI  350 (570)
Q Consensus       304 ~~~~~~iv~~Ll~~g~~~~~~-~n~~d~~G~TpLh~A~~~~~~~~~~~  350 (570)
                      ..++.+++++|++.+...... .+..+.+|+||||+|++.|+.+.+.+
T Consensus       288 ~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~l  335 (346)
T d2ajaa1         288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL  335 (346)
T ss_dssp             CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHH
T ss_pred             cCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHH
Confidence            999999999999987654321 12355789999999999999885543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-28  Score=210.71  Aligned_cols=152  Identities=20%  Similarity=0.257  Sum_probs=143.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      +.||.||..|+.++|++||++++.+++.+ |..|+||||+|+ .|+.+++++|++  .+.+++.++..|.+|++.++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~--~~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLK--QGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-cccccccccccc--ccccccccccccccccccccccc
Confidence            45999999999999999999888888887 999999999987 588999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328          100 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH  177 (570)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  177 (570)
                      +.++++.++++|++++ .+|..|.||||+|+..|+.+++++|+ .|++++.+|.+|.||||+|++.|+.+++++|+++
T Consensus        80 ~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999987 68999999999999999999999887 6899999999999999999999999999999975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=209.52  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=144.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      +|||+||..|+.++|+.|+++ +.+++.+ |.+|+||||+|+ .|+.+++++|++  .+++++.++..|.+||+.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~--~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCcc-CCcccccccccc-cccccccccccc--cccccccccccCccccccccccc
Confidence            899999999999999999986 5678877 999999999886 799999999999  89999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC-CccccccchhhHHHHHHHhCcHHHHHHHHhhC
Q 008328          100 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK-EEDLKEEDRIELLVAVIDAGLYDVALDLIQHH  178 (570)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  178 (570)
                      +.+.++.|++++.+++ ..+..|.+|||+|+..++.+++++|+++++ +.+.+|.+|.||||+|++.++.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999987 689999999999999999999999999996 88999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=204.04  Aligned_cols=153  Identities=17%  Similarity=0.145  Sum_probs=143.0

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      +|||+||..|+.++|+.|++  +|+|++.+|.+|.||||+|+ .|+.|++++|+++|+++. .++..|.+||+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~--~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH--CCCCcCccCCcccccccccc-cccccccccccccccccc-cccccCcccccccccccc
Confidence            89999999999999999999  89999999999999999886 799999999999999987 689999999999999999


Q ss_pred             HHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhh
Q 008328          135 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR  214 (570)
Q Consensus       135 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~  214 (570)
                      .+.++.|++.+.+++..+..|.+|+|.|+..++.++++.|+++++...+.+|.+|+||||+|++.++       .++++.
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~-------~~iv~~  151 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR-------NEVVSL  151 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC-------HHHHHH
Confidence            9999999999999999999999999999999999999999999986668999999999999999985       566666


Q ss_pred             hhhc
Q 008328          215 CIYS  218 (570)
Q Consensus       215 l~~~  218 (570)
                      |+..
T Consensus       152 Ll~~  155 (156)
T d1ihba_         152 MQAN  155 (156)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            6543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.1e-26  Score=199.50  Aligned_cols=150  Identities=23%  Similarity=0.164  Sum_probs=139.0

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHc
Q 008328           19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS   98 (570)
Q Consensus        19 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~   98 (570)
                      .||||.||+.|+.++|+.||+.+ .+++ . |..|+||||+|+..++.++++.++.  .+......+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~g-a~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANG-APFT-T-DWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHT-CCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcC-CCcc-c-ccCCCcccccccccccccccccccc--cccccccccccccccccccccc
Confidence            49999999999999999999875 4444 3 8999999999999999999999998  6677777888899999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328           99 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL  174 (570)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  174 (570)
                      .+.++++++.+++.+.. .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+.|++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999987 6899999999999999999999999999999999999999999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.5e-26  Score=226.07  Aligned_cols=189  Identities=12%  Similarity=0.060  Sum_probs=96.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcH---HHHHHHHhhCcccccccCCCCCcHHHH
Q 008328          119 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLY---DVALDLIQHHPQLAMARDGNGETALHV  195 (570)
Q Consensus       119 ~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~---~~~~~Ll~~~~~~~~~~d~~g~tpLh~  195 (570)
                      |.+|+||||+||..|+.++|++|+++|++++.+|..|.||||.|+..++.   +.++.+++...+....+|..|+||||+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            44444444444444444444444444444444444444444444433321   111122222122235678899999998


Q ss_pred             HHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHH
Q 008328          196 LARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVE  275 (570)
Q Consensus       196 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~  275 (570)
                      ++..+....   .....+                       .....++..+..............+.++++.+.......
T Consensus       184 ~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
T d1sw6a_         184 IIITSGMTG---CSAAAK-----------------------YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  237 (301)
T ss_dssp             HHHHHTSTT---CHHHHH-----------------------HHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             HHHHhCccc---cHHHHH-----------------------HHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHH
Confidence            886543110   011111                       111222222222333333444445556666655544433


Q ss_pred             HHH-----HHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhh
Q 008328          276 FLM-----VLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAG  340 (570)
Q Consensus       276 ~v~-----~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~  340 (570)
                      .++     .++...   ++.+|.+|+||||+|+++|+.++|++|+++|+++++    +|++|+||||+|+
T Consensus       238 ~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~----~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         238 ILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----ANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC----CCTTSCCGGGGTC
T ss_pred             HHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHcC
Confidence            332     233332   457799999999999999999999999999999986    9999999999997

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.6e-26  Score=198.50  Aligned_cols=151  Identities=19%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      +.||.||..|+.++|+.|++. .+++++.+|..|+||||+|+. |+.+++++|++++.+++ ..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~-~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHh-CCCCCCccCCCCCcccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            459999999999999999985 688999999999999999874 88999999999999987 688899999999999999


Q ss_pred             HHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhh
Q 008328          135 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR  214 (570)
Q Consensus       135 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~  214 (570)
                      .+++++++++|++++.+|.+|.||||+|+..|+.+++++|+ .++++ +.+|.+|+||||+|++.|+       .++++.
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~-------~~iv~~  151 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGA-------QDLVDI  151 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCC-------HHHHHH
T ss_pred             ccccccccccccccccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCC-------HHHHHH
Confidence            99999999999999999999999999999999999999887 57777 6899999999999999985       666766


Q ss_pred             hhh
Q 008328          215 CIY  217 (570)
Q Consensus       215 l~~  217 (570)
                      |+.
T Consensus       152 Ll~  154 (156)
T d1bd8a_         152 LQG  154 (156)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.4e-25  Score=194.57  Aligned_cols=143  Identities=21%  Similarity=0.183  Sum_probs=135.7

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcC
Q 008328           54 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG  133 (570)
Q Consensus        54 ~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g  133 (570)
                      .||||.||+.|+.++|++||+  +|++++ .|..|+||||+|+..++.++++.++....... ..+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~--~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHH--cCCCcc-cccCCCcccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            499999999999999999999  788887 69999999999999999999999999888776 57888999999999999


Q ss_pred             CHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328          134 HKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS  201 (570)
Q Consensus       134 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~  201 (570)
                      +.++++++++++++.+.++.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+.+|+
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999998 6899999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.5e-26  Score=221.16  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=123.9

Q ss_pred             Cccccccc-ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH-------HHHHHHhhccCCc
Q 008328           77 TPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK-------EMIWYLYSVTKEE  148 (570)
Q Consensus        77 ~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~-------~~v~~Ll~~g~~~  148 (570)
                      .+.++|.. |.+|+||||+||..|+.++|++|+++|++++ .+|..|+||||.||..++.       ++++++.   .+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~  170 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCL  170 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhh
Confidence            45677755 8889999999999999999999999999887 6888899999999886652       3444443   345


Q ss_pred             cccccchhhHHHHHHHhCcH------------HHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhh
Q 008328          149 DLKEEDRIELLVAVIDAGLY------------DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCI  216 (570)
Q Consensus       149 ~~~~~~g~t~L~~A~~~~~~------------~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~  216 (570)
                      +..|..|+||||.++..+..            .++..+.+.+..........+.++++.+......       ...+.  
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--  241 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD-------SILEN--  241 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C-------HHHHH--
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchH-------HHHHH--
Confidence            66777888999887765431            2344555655555455566666776666544320       00000  


Q ss_pred             hcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCC
Q 008328          217 YSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR  296 (570)
Q Consensus       217 ~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  296 (570)
                                          ......+       ...+|.+|.+|+||||+|+++|+.++|++|+++|++ ++.+|..|+
T Consensus       242 --------------------~~~~~~~-------~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd-~~~~n~~G~  293 (301)
T d1sw6a_         242 --------------------LDLKWII-------ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGL  293 (301)
T ss_dssp             --------------------CSHHHHH-------HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             --------------------HhhHHHH-------hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence                                0011111       223678899999999999999999999999999999 678899999


Q ss_pred             chhHHHH
Q 008328          297 SMFHIAV  303 (570)
Q Consensus       297 t~Lh~A~  303 (570)
                      ||||+|+
T Consensus       294 Tpl~~A~  300 (301)
T d1sw6a_         294 RPVDFGA  300 (301)
T ss_dssp             CGGGGTC
T ss_pred             CHHHHcC
Confidence            9999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-25  Score=186.23  Aligned_cols=118  Identities=19%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCC-CcHHHHHHHc
Q 008328           54 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG-ATPLCMAALL  132 (570)
Q Consensus        54 ~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~TpLh~A~~~  132 (570)
                      .++||+|++.|+.++|++|++  +|++++.+|.+|.||||.|+ .|+.+++++|+++|++++ .++..| .||||+|++.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~--~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDAARE   79 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHH--cCCccccccccccccccccc-cccccccccccccccccc-ccccccccccccccccc
Confidence            455666666666666666665  55666666666666665443 456666666666666555 233333 3466666666


Q ss_pred             CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHH
Q 008328          133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI  175 (570)
Q Consensus       133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  175 (570)
                      |+.+++++|+++|++++.+|.+|.||||+|+++|+.|++++|+
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666666666666666666666666666666666666665554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=9.4e-26  Score=187.42  Aligned_cols=106  Identities=25%  Similarity=0.256  Sum_probs=83.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcC
Q 008328           54 DTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLG  133 (570)
Q Consensus        54 ~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g  133 (570)
                      +|||++|++.|+.++|++|++  .|++++.+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~--~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT--TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHH--hhhccccccccccccccccccccccccccccccccceee-ecccccccchhhhhhcC
Confidence            477888888888888888887  677888888888888888888888888888888887776 57777888888888888


Q ss_pred             CHHHHHHHhhccCCccccccchhhHHHHH
Q 008328          134 HKEMIWYLYSVTKEEDLKEEDRIELLVAV  162 (570)
Q Consensus       134 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  162 (570)
                      +.+++++|+++|+|++.+|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            88888888888877777777777777766

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-24  Score=180.71  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=111.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC-hHHHHHH
Q 008328           18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN-TALCFAA   96 (570)
Q Consensus        18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~-TpLh~A~   96 (570)
                      +.++||.||+.|+.++|++|+++ +.+++.+ |..|.||||+|+ .|+.+++++|++  .|++++.+|..|. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~--~ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc-CCccccc-cccccccccccc-cccccccccccc--ccccccccccccccccccccc
Confidence            56899999999999999999985 5778877 899999999775 799999999999  8999999999876 6999999


Q ss_pred             HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhh
Q 008328           97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS  143 (570)
Q Consensus        97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~  143 (570)
                      +.|+.+++++|+++|++++ .+|..|+||||+|+++|+.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccc-cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999988 799999999999999999999999976

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-24  Score=181.56  Aligned_cols=120  Identities=21%  Similarity=0.144  Sum_probs=64.4

Q ss_pred             cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328           55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH  134 (570)
Q Consensus        55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~  134 (570)
                      ++||.||..|+.++|+.|++  .|+|++.+|.+|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|+.+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~--~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH--cCCCccccccccccccccccccccccccccccccccccc-cccccCcccccccchhhH
Confidence            34555555555555555555  455555555555555555555555555555555555554 355555555555555555


Q ss_pred             HHHHHHHhhccCCcccccc-chhhHHHHH--HHhCcHHHHHHHHhh
Q 008328          135 KEMIWYLYSVTKEEDLKEE-DRIELLVAV--IDAGLYDVALDLIQH  177 (570)
Q Consensus       135 ~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A--~~~~~~~~~~~Ll~~  177 (570)
                      .+++++|+++|++++..+. ++.|+++++  ++.|+.+++++|++.
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            5555555555555554432 344443333  344555555555543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1e-24  Score=181.10  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=104.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHc
Q 008328           19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVS   98 (570)
Q Consensus        19 ~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~   98 (570)
                      .|||++|++.|+.++|+.|++. +.+++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|.+|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~--~g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHH--SSCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccc-ccccccccccccccccccccccccc--ccceeeecccccccchhhhhhc
Confidence            4899999999999999999986 5677777 8999999999999999999999999  8999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHh
Q 008328           99 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLY  142 (570)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll  142 (570)
                      |+.+++++|+++|++++ .+|.+|.||||+|.    .+.++.||
T Consensus        79 ~~~~~v~~Ll~~Gad~~-~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          79 GHVSCVKLLLSKGADKT-VKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             TCCHHHHHHHTTCCCSS-SSSSSTCCCCCTCS----STTTGGGG
T ss_pred             Cchhhhhhhhcccccce-eeCCCCCCHHHHHh----HHHHHHhc
Confidence            99999999999999987 79999999999983    24455554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.5e-24  Score=179.07  Aligned_cols=122  Identities=21%  Similarity=0.200  Sum_probs=110.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328           20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG   99 (570)
Q Consensus        20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g   99 (570)
                      ++||.||..|+.++|+.|+++ +.+++.+ |.+|+||||+|+..|+.+++++|++  .|++++.+|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~--~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccc-ccccccccccccccccccccccccc--cccccccccccCcccccccchhh
Confidence            789999999999999999985 5678877 8999999999999999999999999  79999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCCcCCCCCCcHHHHH--HHcCCHHHHHHHhhcc
Q 008328          100 VTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYSVT  145 (570)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A--~~~g~~~~v~~Ll~~g  145 (570)
                      +.+++++|+++|++++...+..|+||++++  +..|+.+++++|++.+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999999855556789987765  5779999999998754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=7.4e-22  Score=171.14  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=79.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccchhhc-----cCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccccccCCChHH
Q 008328           21 PLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGNTAL   92 (570)
Q Consensus        21 ~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL   92 (570)
                      .|+.|++.++...+..++..+ .++..+     .+..|+||||+|++.   |+.+++++|++  .|++++.+|.+|+|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadin~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcC-CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH--cCCChhhhhhhhcccc
Confidence            344666777777766666542 333222     134566777777753   45667777776  5667777777777777


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC
Q 008328           93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK  146 (570)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~  146 (570)
                      |+|+..|+.+++++|+++|++++ .+|..|+||||+|++.|+.+++++|++.++
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccCcccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            77777777777777777777665 567777777777777777777777766554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=7.3e-22  Score=171.17  Aligned_cols=127  Identities=19%  Similarity=0.102  Sum_probs=115.8

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHccCccccccc------ccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCCc
Q 008328           54 DTALHIAAGARRTLFVQELVNLMTPEDLALR------NKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGAT  124 (570)
Q Consensus        54 ~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~T  124 (570)
                      -..|+.|++.++...+..++.  .|.|++.+      +..|+||||+|++.   |+.+++++|+++|++++ .+|..|+|
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g~T   83 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGST   83 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHH--cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhhcc
Confidence            357999999999999999998  77776654      77899999999975   67899999999999987 69999999


Q ss_pred             HHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccccc
Q 008328          125 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAM  183 (570)
Q Consensus       125 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  183 (570)
                      |||+|+..|+.+++++|+++|++++.+|.+|.||||+|++.|+.+++++|++.+....+
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999998765543