Citrus Sinensis ID: 008356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINVRIPIHSVIVCGHT
Secondary Structure (PSIPRED)
cccccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEEccccccEEEEEEcccccEEEEcccccccEEEEccccccEEEcccccccEEEcccccEEEEEcccccEEEEEcccccEEEEccccccccccEEEccccccEEEcccccccccccEEEEEcccccccEEcccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEEccccccEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEEcccccccEccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHcccHHHcccccccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
mynckdehlASISLSGDLILHNLasgakaaelkdpneqVLRVLDYSRNSRHLLVtagddgtlhlwdttgrspkvswlkqhsaptagisfssdDKIIAsvgldkklytydpgsrrpsscityeapfsslafidddwiltagtsngrvvfydirgkpqpltvLRACSSSEAVSSLCWqrakpvfidettCKAETALlggavgdsilmpdplpsvttssvSLSTavsgsrpnsrsgpsaeassltvggtgeetpqrsylrpggplarlhaprssynfkddmevfsplvdvqpitpsldklwdghegakkdhlpidkkpssmlfpsssrrfpyaedgsnehsvfdwkssstskqddarsfallgstpspssksedssitppeawggeklsdkFALLrqplnmpsrygmstssgltsssmysglqdvslsqtsissltdsnlsrenmrtkdvtsyqetsslgfpehlsssfpslslgtkgilgsgnldssrpssltlthreprrtyaeristtsgtslsvgspktkktgAETKEELLSNFlsrsdtsavvepgippainvripihsVIVCGHT
Flexible Loop (DISEMBL)
MYNCKDEHLASISLSGDLILHNLASGAkaaelkdpnEQVLRVLDYSRNSRHLLvtagddgtlhLWDTTGRSPKVSWLKQHSaptagisfssddKIIASVgldkklytydpgsrrpssCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVsgsrpnsrsgpsaeassltvggtgeetpqrsylrpggpLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEgakkdhlpidkkpssmlfpSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLgstpspssksedssITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSltdsnlsrenmrtKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILgsgnldssrpssltlthreprrtyaeristtsgtslsvgspktkktgaeTKEELLsnflsrsdtsavvepgippainvripihSVIVCGHT
Low Complexity Region (SEG)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPsvttssvslstavsgsrpnsrsgpsAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGstpspssksedssitppEAWGGEKLSDKFALLRQPLNMPSRygmstssgltsssmysglQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERIsttsgtslsvgsPktkktgaetkeeLLSNFLSRSDTSAVVEPGIPPAINVRIPIHSVIVCGHT
Disordered region (IsUnstruct)
***********ISLSGDLILHNLASG***********QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL*************************************************************************MEVFSPLVDVQPITPSLDKLW*****************************************************************************************************************************************************************************************************************************************************VVEPGIPPAINVRIPIHSVIVCG**
Disordered Region (DISOPRED)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDH**I*KKPSSMLFPSS**********SNEHSVFDWKS******************************TPPEAWGGEKLSDKFALLRQPLNMPSRYG********************************NLSRENMRT****************************************************************************************************************************
Disordered Region (DISEMBL)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA*********LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS*******************************************YLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPY***********************ARSFALL*****************PEAWGGEKLSDKFALLRQPLNMPSRY**************SGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERI*******************AETKEELLSNFLSRSDTSAVVEPGIPPAINVRIPIHSVIVCGHT
Disordered Region (DISPRO)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA************************************************************************************************KDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYA******************************************************************N********************GL*D************************************************************************************************************EL***FLSRSDTSAVVEPGIPPAINVRIPIHSVIVC***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINVRIPIHSVIVCGHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	568	2.2.26 [Sep-21-2011]
Q3B7M6	659	Protein NEDD1 OS=Bos taur	yes	no	0.304	0.262	0.323	2e-21
Q8NHV4	660	Protein NEDD1 OS=Homo sap	no	no	0.369	0.318	0.280	2e-20
P33215	660	Protein NEDD1 OS=Mus musc	yes	no	0.304	0.262	0.301	2e-19
Q54S59	299	WD repeat-containing prot	yes	no	0.25	0.474	0.313	3e-08
Q55563	1693	Uncharacterized WD repeat	N/A	no	0.220	0.073	0.297	5e-05
B6GZA1	673	Probable E3 ubiquitin lig	yes	no	0.253	0.213	0.298	7e-05
P90917	412	Probable histone-binding	yes	no	0.197	0.271	0.277	0.0002
P29829	346	Guanine nucleotide-bindin	no	no	0.184	0.303	0.295	0.0002
Q9VAT2	621	DDB1- and CUL4-associated	no	no	0.121	0.111	0.347	0.0002
P78706	604	Transcriptional repressor	N/A	no	0.232	0.218	0.230	0.0006

>sp|Q3B7M6|NEDD1_BOVIN Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 3/176 (1%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
           YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSIRHLKYSLFKKSLLGSVSDNGI 186

Query: 62  LHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           + LWD   +SP  ++   H AP +GI FS  ++ +  +VGLDK++  YD  S++    + 
Sbjct: 187 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTVGLDKRIILYDTSSKKLVKTLV 246

Query: 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            +AP +++ F+ D   L  G+S G++  YD+R    P+  + A  +S  V  + +Q
Sbjct: 247 ADAPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPIKTISAHKTS--VQCIAFQ 300

Required for mitosis progression. Promotes the nucleation of microtubules from the spindle.
Bos taurus (taxid: 9913)

>sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 18/228 (7%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
           YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186

Query: 62  LHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           + LWD   +SP  ++   H AP +GI FS  ++ +  ++GLDK++  YD  S++    + 
Sbjct: 187 VTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query: 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA-- 178
            + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S  V  + +Q +  
Sbjct: 247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS--VQCIAFQYSTV 304

Query: 179 ------------KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214
                       KP  +++ +     A  GG     I+   P  S+ T
Sbjct: 305 LTKSSLNKGCSNKPTTVNKRSVNVNAA-SGGVQNSGIVREAPATSIAT 351

Required for mitosis progression. Promotes the nucleation of microtubules from the spindle.

Homo sapiens (taxid: 9606)

>sp|P33215|NEDD1_MOUSE Protein NEDD1 OS=Mus musculus GN=Nedd1 PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 3/176 (1%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
           YN  D ++AS SLSG++ILH++ +   +      ++Q +R + YS   + LL +  D+G 
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGV 186

Query: 62  LHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           + LWD   +S   ++   H AP +GI FS  ++ +  ++GLDK++  YD  S++    + 
Sbjct: 187 VTLWDVNSQSSYHTFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query: 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S  V  + +Q
Sbjct: 247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS--VQCIAFQ 300

Required for mitosis progression. Promotes the nucleation of microtubules from the spindle (By similarity). May play an important role during the embryonic development and differentiation of the central nervous system.

Mus musculus (taxid: 10090)

>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 86/150 (57%), Gaps = 8/150 (5%)

Query: 7   EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66
            +L S+S SG++ ++++ +G K   + + N+QVL  +  S N+  + V AG DGT+  +D
Sbjct: 111 NNLVSVSESGNISIYSVETGEKLRSISNTNKQVL-TMAISPNNEQIAV-AGLDGTVLCYD 168

Query: 67  T-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCITYEA 123
             +GR  +VS +K H  P   + FSSD K I +   D ++  +DP S  P  +S + + +
Sbjct: 169 VESGR--RVSEIKAHGVPIRSLCFSSDSKTIFTGAEDSQIRLHDPNSSNPYIASLLGHSS 226

Query: 124 -PFSSLAFIDDDWILTAGTSNGRVVFYDIR 152
             FS +A  + D + ++G+ + +V  +DI+
Sbjct: 227 FIFSLVASSNGDLLASSGSIDRKVCIWDIK 256

Dictyostelium discoideum (taxid: 44689)

>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 26   GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85
            G K   L+   + VL V  +S +S+++ VTA  DGT  +W+ TGR   V  L+ +     
Sbjct: 1414 GKKLTVLRGHQDAVLNV-RFSPDSQYI-VTASKDGTARVWNNTGRELAV--LRHYEKNIF 1469

Query: 86   GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAF-IDDDWILTAGTSNG 144
               FS+D + I +   D     ++   R    C  +E P     F  D  +ILTA   N 
Sbjct: 1470 AAEFSADGQFIVTASDDNTAGIWEIVGREVGICRGHEGPVYFAQFSADSRYILTASVDNT 1529

Query: 145  RVVFYDIRGKP 155
              + +D  G+P
Sbjct: 1530 ARI-WDFLGRP 1539

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B6GZA1|SCONB_PENCW Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=sconB PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 17/161 (10%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN---SRHLLVTAG 57
           + +C+++H+ + S  GD IL  L+   +A     PN       D  ++   S   ++T+G
Sbjct: 522 LADCENDHVGTSSQGGDNILSTLSPLLEATSPSHPNSPFGSSFDQDQDRIESPRYILTSG 581

Query: 58  DDGTLHLWDT-TGRSPKVSWLKQHSAPTAGI-SFSSDDKIIASVGLDKKLYTYDPGSRRP 115
            D T+ LW+T TGR      L+       GI + S+D   IAS G+D+ +  +DP  R P
Sbjct: 582 VDTTIRLWETSTGRC-----LRTFFGHLEGIWALSADTLRIASGGMDRMVKIWDP--RIP 634

Query: 116 SSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153
           +   TYE   A  + +   D  +I   G  + +V  YD R 
Sbjct: 635 TGQDTYEGHSAAVNCIGLSDSRFI--TGGDDYQVRMYDFRA 673

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485)

>sp|P90917|RBA1_CAEEL Probable histone-binding protein rba-1 OS=Caenorhabditis elegans GN=rba-1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 25/137 (18%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWD------TTGRSPKVSWLKQHSAPTAGISFSS-DDKI 95
           + +S      L+TAGDDG +  WD       +G+    S  K HS+    +SF +  + +
Sbjct: 177 MSWSNTREGHLLTAGDDGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHNFV 236

Query: 96  IASVGLDKKLYTYDPGSRRPS----------SCITYEAPFSSLAFIDDDWILTAGTSNGR 145
             SVG D+KL  +D    +P           +CIT+  PFS       ++IL  G+ +  
Sbjct: 237 FGSVGDDRKLNLWDLRQSKPQLTAVGHTAEVNCITFN-PFS-------EYILATGSVDKT 288

Query: 146 VVFYDIRGKPQPLTVLR 162
           V  +D+R   + +  L+
Sbjct: 289 VALWDMRNMRKKMYTLK 305

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA (By similarity). Required to repress the induction of vulval development by Ras signaling.

Caenorhabditis elegans (taxid: 6239)

>sp|P29829|GBB2_DROME Guanine nucleotide-binding protein subunit beta-2 OS=Drosophila melanogaster GN=Gbeta76C PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 45  YSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK 104
           ++ +SRH  VT   DG L +WDT   + KV  +   SA    ++FS     +A  G+D +
Sbjct: 67  FAGDSRHC-VTGSLDGKLIIWDTW-TANKVQIIPLRSAWVMTVAFSPSGNFVACGGMDNQ 124

Query: 105 LYTYDPGSRRPSSC-------ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152
              YD  +R  S         + YE   SS  F+DD  ++T G+ + ++  +D+ 
Sbjct: 125 CTVYDVNNRDASGVAKMVKELMGYEGFLSSCRFLDDGHLIT-GSGDMKICHWDLE 178

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Drosophila melanogaster (taxid: 7227)

>sp|Q9VAT2|DCA10_DROME DDB1- and CUL4-associated factor 10 homolog OS=Drosophila melanogaster GN=CG1523 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%)

Query: 52  LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111
           L  T  DD T+ LWD      K+  L  HS     I +SS DK++ S G D  ++T+D  
Sbjct: 104 LFATGSDDFTVALWDLRNMKQKLRVLHGHSNWVKNIEYSSKDKLLVSSGFDGSIFTWDIN 163

Query: 112 SRRPSSCIT 120
           S+     I+
Sbjct: 164 SQTEQGLIS 172

Drosophila melanogaster (taxid: 7227)

>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rco-1 PE=4 SV=2

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 20  LHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74
           ++++ +G K   L+D N     +  +R + +S + ++L  T  +D  + +WD   R+ + 
Sbjct: 322 IYDVETGEKLCILQDENIDLTGDLYIRSVCFSPDGKYL-ATGAEDKLIRVWDIQSRTIRN 380

Query: 75  SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
           +    H      + FS D + IAS   D+ +  +D  + + +S ++ E   +++A   D 
Sbjct: 381 T-FHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDK 439

Query: 135 WILTAGTSNGRVVFYDIRG 153
             + AG+ +  V  +D+RG
Sbjct: 440 QFVAAGSLDKSVRVWDMRG 458

Represses transcription by RNA polymerase II. May be involved at several stages of conidiation and other growth and development processes. Appears to regulate genes that are expressed in asexual and sexual spore pathways.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
359486608	805	PREDICTED: uncharacterized protein LOC10	0.966	0.681	0.739	0.0
296086168	779	unnamed protein product [Vitis vinifera]	0.941	0.686	0.735	0.0
224101047	785	predicted protein [Populus trichocarpa]	0.952	0.689	0.710	0.0
224109450	777	predicted protein [Populus trichocarpa]	0.943	0.689	0.693	0.0
449441356	799	PREDICTED: protein NEDD1-like [Cucumis s	0.957	0.680	0.716	0.0
356499133	795	PREDICTED: protein NEDD1-like [Glycine m	0.945	0.675	0.671	0.0
356553817	846	PREDICTED: protein NEDD1-like [Glycine m	0.941	0.632	0.663	0.0
357492447	819	Protein NEDD1 [Medicago truncatula] gi|3	0.950	0.659	0.660	0.0
225459552	785	PREDICTED: protein NEDD1-like [Vitis vin	0.947	0.685	0.652	0.0
255566510	799	protein with unknown function [Ricinus c	0.957	0.680	0.690	1e-179

>gi|359486608|ref|XP_002277667.2| PREDICTED: uncharacterized protein LOC100246247 [Vitis vinifera]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/575 (73%), Positives = 480/575 (83%), Gaps = 26/575 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISL+GDLILHNLASGA+AAELKDPNEQV RVLDYSR SRHLLVTAGDDG
Sbjct: 141 MYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVSRVLDYSRISRHLLVTAGDDG 200

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++H+WDTTGRSPKVSWLKQHSAPTAG+SFS S+DKIIA+VGLDKKLYT+D GSRRPSSCI
Sbjct: 201 SIHMWDTTGRSPKVSWLKQHSAPTAGVSFSPSNDKIIATVGLDKKLYTFDTGSRRPSSCI 260

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YEAPFSSLAF DD  IL AGTSNGRVVFYD+RGKPQP TVLRA SSSEAV+SLCWQR+K
Sbjct: 261 PYEAPFSSLAFRDDGLILAAGTSNGRVVFYDVRGKPQPFTVLRAYSSSEAVTSLCWQRSK 320

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C  ETALLGGAV DSILMPDPLPSVT+SS+SLSTA+  SR   RSGPS E S
Sbjct: 321 PVIVNESNCTPETALLGGAVEDSILMPDPLPSVTSSSLSLSTAIPASRNPGRSGPSTETS 380

Query: 240 SLTVG-----------GTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SLT              T EETPQ+++LRPGG LARLHAPRS+YNFKDDMEVFSPLVD+Q
Sbjct: 381 SLTAASGGSVSSSLYLSTEEETPQKNHLRPGGTLARLHAPRSNYNFKDDMEVFSPLVDIQ 440

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           PITPSLDKLWD HE AKKDHLP+DKKPSS+LFPSSSRRFP+ +DG+ +H +FDWKSSSTS
Sbjct: 441 PITPSLDKLWDNHEAAKKDHLPVDKKPSSLLFPSSSRRFPFVDDGAIDHPIFDWKSSSTS 500

Query: 349 KQDDAR-SFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTS 407
           +QDD R S +LLGSTP+PSSKS + SITPPEAWGGE+LSDKFA  RQ  N+PSR+GM T+
Sbjct: 501 RQDDTRASLSLLGSTPAPSSKSGEDSITPPEAWGGERLSDKFAHHRQSANLPSRFGMLTT 560

Query: 408 SGLTSSSMYSGLQD--VSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSS 465
           SGLTS SM SGLQD  VS SQTS+SSL++SNL   N+R KDV+S QET SLGF EH+  S
Sbjct: 561 SGLTSGSMLSGLQDLSVSTSQTSMSSLSNSNLGYANLRPKDVSSSQET-SLGFSEHVPFS 619

Query: 466 FPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPK 519
             S+SLGTKG+ G  NL+   P+SL L    PRR  TYAERI TTS    G SLS+GSPK
Sbjct: 620 SISMSLGTKGVTGQTNLELPGPTSLNL----PRRFSTYAERIGTTSSFSDGISLSMGSPK 675

Query: 520 TKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAIN 554
           TKK+GAET+EELL + LSR+D S  +EPGI P+IN
Sbjct: 676 TKKSGAETREELLHSLLSRTDISTAMEPGILPSIN 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086168|emb|CBI31609.3| unnamed protein product [Vitis vinifera]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/564 (73%), Positives = 467/564 (82%), Gaps = 29/564 (5%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISL+GDLILHNLASGA+AAELKDPNEQV RVLDYSR SRHLLVTAGDDG
Sbjct: 140 MYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVSRVLDYSRISRHLLVTAGDDG 199

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++H+WDTTGRSPKVSWLKQHSAPTAG+SFS S+DKIIA+VGLDKKLYT+D GSRRPSSCI
Sbjct: 200 SIHMWDTTGRSPKVSWLKQHSAPTAGVSFSPSNDKIIATVGLDKKLYTFDTGSRRPSSCI 259

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YEAPFSSLAF DD  IL AGTSNGRVVFYD+RGKPQP TVLRA SSSEAV+SLCWQR+K
Sbjct: 260 PYEAPFSSLAFRDDGLILAAGTSNGRVVFYDVRGKPQPFTVLRAYSSSEAVTSLCWQRSK 319

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C  ETALLGGAV DSILMPDPLPSVT+SS+SLSTA+  SR   RSGPS E S
Sbjct: 320 PVIVNESNCTPETALLGGAVEDSILMPDPLPSVTSSSLSLSTAIPASRNPGRSGPSTETS 379

Query: 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
           SLT                 G LARLHAPRS+YNFKDDMEVFSPLVD+QPITPSLDKLWD
Sbjct: 380 SLTAA--------------SGTLARLHAPRSNYNFKDDMEVFSPLVDIQPITPSLDKLWD 425

Query: 300 GHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDAR-SFAL 358
            HE AKKDHLP+DKKPSS+LFPSSSRRFP+ +DG+ +H +FDWKSSSTS+QDD R S +L
Sbjct: 426 NHEAAKKDHLPVDKKPSSLLFPSSSRRFPFVDDGAIDHPIFDWKSSSTSRQDDTRASLSL 485

Query: 359 LGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSG 418
           LGSTP+PSSKS + SITPPEAWGGE+LSDKFA  RQ  N+PSR+GM T+SGLTS SM SG
Sbjct: 486 LGSTPAPSSKSGEDSITPPEAWGGERLSDKFAHHRQSANLPSRFGMLTTSGLTSGSMLSG 545

Query: 419 LQD--VSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGI 476
           LQD  VS SQTS+SSL++SNL   N+R KDV+S QET SLGF EH+  S  S+SLGTKG+
Sbjct: 546 LQDLSVSTSQTSMSSLSNSNLGYANLRPKDVSSSQET-SLGFSEHVPFSSISMSLGTKGV 604

Query: 477 LGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPKTKKTGAETKEE 530
            G  NL+   P+SL L    PRR  TYAERI TTS    G SLS+GSPKTKK+GAET+EE
Sbjct: 605 TGQTNLELPGPTSLNL----PRRFSTYAERIGTTSSFSDGISLSMGSPKTKKSGAETREE 660

Query: 531 LLSNFLSRSDTSAVVEPGIPPAIN 554
           LL + LSR+D S  +EPGI P+IN
Sbjct: 661 LLHSLLSRTDISTAMEPGILPSIN 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101047|ref|XP_002312120.1| predicted protein [Populus trichocarpa] gi|222851940|gb|EEE89487.1| predicted protein [Populus trichocarpa]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/564 (71%), Positives = 462/564 (81%), Gaps = 23/564 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASGA+A ELKDPN+QVLRVLDYSR SRHLLVTAGDDG
Sbjct: 141 MYNCKDEHLASISLSGDLILHNLASGARATELKDPNKQVLRVLDYSRVSRHLLVTAGDDG 200

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWDTTGRSPKVSW KQHSAPTAGISFS S+DKIIASVGLDKKLYTYD GSRR +S I
Sbjct: 201 SVHLWDTTGRSPKVSWSKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDSGSRRHTSLI 260

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSL+F DD W+L AGTS+GRVVFYD+RGKPQP TVLRA  SSEAV+ LCWQR+K
Sbjct: 261 SYEAPFSSLSFRDDGWVLAAGTSSGRVVFYDVRGKPQPFTVLRAYGSSEAVTGLCWQRSK 320

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C AE ALLGGAV DSILMPDPLPSVT+SSV+LS+    +   +  GP++   
Sbjct: 321 PVIVNESNCTAEIALLGGAVDDSILMPDPLPSVTSSSVALSSVSGSA---TVGGPASSIP 377

Query: 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
           +L++    EETP RS+L P G L RL+ PRSSYNFKD+MEVFSPLVDVQPITPSLDK W 
Sbjct: 378 NLSL---AEETPHRSHLWP-GTLTRLNPPRSSYNFKDEMEVFSPLVDVQPITPSLDKFWT 433

Query: 300 GHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSF-AL 358
            HEG KKD+LP+DKKPSS+LFPSSSRRFP+AEDG+N+H +FDWKSSSTS+QDD +SF +L
Sbjct: 434 DHEGLKKDNLPVDKKPSSLLFPSSSRRFPFAEDGTNDHPIFDWKSSSTSRQDDTQSFTSL 493

Query: 359 LGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSG 418
            GSTP+PSSKSEDSSITPPEAWGGE+LSDK A LRQPLN+P R+   TS   TS SM+S 
Sbjct: 494 GGSTPTPSSKSEDSSITPPEAWGGERLSDKIAHLRQPLNLPPRF-GMTSGSSTSGSMFSS 552

Query: 419 LQDVSLSQTSISSLTDSNLSR--ENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGI 476
           LQD+  S +  S  + ++ SR   N+R +DV+  QET S+GFPEH+SSS   LSLG KGI
Sbjct: 553 LQDLPSSTSQSSMSSLTSSSRGFSNLRARDVSLTQET-SVGFPEHISSSSMFLSLGAKGI 611

Query: 477 LGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPKTKKTGAETKEE 530
            G  NL++S P+SL L    PRR  TYAERISTTS    GTSLSVGSPKTKKTG ET+EE
Sbjct: 612 TGPANLETSGPASLNL----PRRFSTYAERISTTSSFSDGTSLSVGSPKTKKTGVETREE 667

Query: 531 LLSNFLSRSDTSAVVEPGIPPAIN 554
           LL++ L RSD  AV EPGI PA+N
Sbjct: 668 LLNSLLLRSDALAVTEPGIVPAMN 691

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109450|ref|XP_002315198.1| predicted protein [Populus trichocarpa] gi|222864238|gb|EEF01369.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/568 (69%), Positives = 455/568 (80%), Gaps = 32/568 (5%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASGA+A ELKDP+EQVLRVLDYSR SRHLLVTAGDDG
Sbjct: 141 MYNCKDEHLASISLSGDLILHNLASGARATELKDPHEQVLRVLDYSRVSRHLLVTAGDDG 200

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWD T RSPKVSWLKQHSAPT GISFS S+DKIIASVGLDKKLYTY+ GSRR +S I
Sbjct: 201 SVHLWDITSRSPKVSWLKQHSAPTVGISFSPSNDKIIASVGLDKKLYTYESGSRRHTSLI 260

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD  IL AGTS+GRVVFYD+RGKPQP TVL A  SSEAV+SLCWQR+K
Sbjct: 261 SYEAPFSSLAFRDDGLILAAGTSSGRVVFYDVRGKPQPFTVLHAYGSSEAVTSLCWQRSK 320

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVT----TSSVSLSTAVSGSRPNSRSGPS 235
           PV ++E+TC  E ALLGGAV DSILMPDPLPSVT    +   S  TA++       SGP+
Sbjct: 321 PVIVNESTCTPEIALLGGAVDDSILMPDPLPSVTSSSLSIESSSLTAIT-------SGPA 373

Query: 236 AEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLD 295
           +  S+LT+    EETP +S+L P G L +L+ PRSSYNFKD+MEVFSPL DVQPITPSLD
Sbjct: 374 STMSNLTL---AEETPHQSHLWP-GTLMKLN-PRSSYNFKDEMEVFSPLADVQPITPSLD 428

Query: 296 KLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARS 355
           K WD  EG KKD+L +DKKPSS+LFPSS RRFP+ EDG N+H +FDWKSSSTS+QD+ARS
Sbjct: 429 KFWDDQEGLKKDNLSVDKKPSSLLFPSSIRRFPFQEDGINDHPIFDWKSSSTSRQDEARS 488

Query: 356 FAL-LGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSS 414
           F L  GSTPSPSSKSEDSSITPPEAWGGE+LSD  A L QPLN+PSR+ M++ S  T  S
Sbjct: 489 FTLPGGSTPSPSSKSEDSSITPPEAWGGERLSDSIAHLPQPLNLPSRFAMTSGSS-TLGS 547

Query: 415 MYSGLQDVSLS--QTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLG 472
           M+S LQD+S S  QT  SSL +S+ S  N+ T+DV+  QET S+GFPEH+SSS  SLSLG
Sbjct: 548 MFSSLQDLSSSTNQTGTSSLNNSSCSFSNLHTRDVSLNQET-SMGFPEHISSSSMSLSLG 606

Query: 473 TKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSPKTKKTGAE 526
           TK I    +L++S P+SL     +PRR  T+AERI+TT+    GTSLSV SPKTKKTG E
Sbjct: 607 TKHITELASLEASGPASL----NQPRRFSTFAERINTTASFSDGTSLSVVSPKTKKTGVE 662

Query: 527 TKEELLSNFLSRSDTSAVVEPGIPPAIN 554
           T+EELL++ LSRSD  AV EPGI PA+N
Sbjct: 663 TREELLNSILSRSDALAVTEPGILPAMN 690

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441356|ref|XP_004138448.1| PREDICTED: protein NEDD1-like [Cucumis sativus] gi|449495290|ref|XP_004159790.1| PREDICTED: protein NEDD1-like [Cucumis sativus]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/571 (71%), Positives = 461/571 (80%), Gaps = 27/571 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASGA+AAELKDPNEQVLRVLDYSR SRHLLVTAGDDG
Sbjct: 143 MYNCKDEHLASISLSGDLILHNLASGARAAELKDPNEQVLRVLDYSRTSRHLLVTAGDDG 202

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGR+PK+SW KQHSAPTAGI FS S+DK  ASVGLDKKLYTYD GSRRPSS I
Sbjct: 203 TVHLWDTTGRNPKISWQKQHSAPTAGIGFSPSNDKSFASVGLDKKLYTYDSGSRRPSSFI 262

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YEAPFSS+AF DD  IL AGTSNGRVVFYD+RGKP+P  VLRA SSSEAV+SL WQR K
Sbjct: 263 AYEAPFSSMAFRDDGLILAAGTSNGRVVFYDVRGKPEPYIVLRAYSSSEAVTSLSWQRLK 322

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV ++E+ C AE ALLGGA+ DSILMPDPLPSVTTS+  LS A SGSR   RSG + EAS
Sbjct: 323 PVIVNESNCTAEVALLGGAIEDSILMPDPLPSVTTSTGPLS-ATSGSRNPGRSGSTFEAS 381

Query: 240 SLTVG---GTGEETPQRSYLRPGG--PLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL 294
                    T EETP RS+LR GG   LARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL
Sbjct: 382 LTETSSSFSTAEETPLRSHLRSGGSLALARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL 441

Query: 295 DKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDAR 354
           DKLWD H G+KKD+ P DKKP SMLFPSSSRRF   EDG+++H +F+WKSSS SKQDD R
Sbjct: 442 DKLWDDHNGSKKDN-PFDKKPLSMLFPSSSRRFSSIEDGASDHPIFNWKSSS-SKQDDIR 499

Query: 355 SFA-LLGSTPSPS--SKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGM--STSSG 409
           S +  LGSTP+P+  SK+EDSSITPPEAWGGEKLS+KFA LRQP+ +PSR+GM  S+SS 
Sbjct: 500 SSSGQLGSTPAPTVNSKNEDSSITPPEAWGGEKLSEKFAQLRQPMTLPSRFGMLASSSSS 559

Query: 410 LTSSSMYSGLQD--VSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFP 467
            TSSSM SGLQD   S+SQ+SI+SLT+ N S  N+RTKD TS QE  SL  PEH S++  
Sbjct: 560 QTSSSMISGLQDPSSSISQSSITSLTNLNFSYPNLRTKDATS-QEV-SLSIPEHFSTTAA 617

Query: 468 SLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTSGTS--LSVGSPKTKKT 523
           SLSLGT+  +G  N DS RPS++TL    PRR  TYAER+STTS  S  L  GSPKTKK 
Sbjct: 618 SLSLGTRVNIGLSNTDSPRPSTMTL----PRRFSTYAERLSTTSSFSDGLPAGSPKTKKL 673

Query: 524 GAETKEELLSNFLSRSDTSAVVEPGIPPAIN 554
           G+ET+EE+L+N L++ DT +V E GIPPA+N
Sbjct: 674 GSETREEVLNN-LAKFDTLSVTESGIPPAMN 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499133|ref|XP_003518397.1| PREDICTED: protein NEDD1-like [Glycine max]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/575 (67%), Positives = 446/575 (77%), Gaps = 38/575 (6%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDL+LHNLASG KAAELKDPN+Q+LRVLDYSR SRHLL+TAGDDG
Sbjct: 140 MYNCKDEHLASISLSGDLMLHNLASGQKAAELKDPNQQMLRVLDYSRVSRHLLLTAGDDG 199

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGRSPKVSW+KQHSAPTAGISFS S+DKIIASVGLDKK+Y YD GSRRPSS I
Sbjct: 200 TVHLWDTTGRSPKVSWIKQHSAPTAGISFSPSNDKIIASVGLDKKMYIYDSGSRRPSSYI 259

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD W+L AGTSNGRV FYD+RGKPQP+ VL A  SSEAV+SLCWQR+K
Sbjct: 260 SYEAPFSSLAFRDDGWMLAAGTSNGRVAFYDVRGKPQPVAVLHAYGSSEAVTSLCWQRSK 319

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE  C AETAL+G  V DSILMPDPLPS T+S+ SLST+VS +R + R G S + S
Sbjct: 320 PVVVDERNCSAETALVGDTVEDSILMPDPLPSATSSNNSLSTSVSSTRNSGRLGASFDGS 379

Query: 240 SLTVGGTG-----------EETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SLT  G+G           EETPQR++L PGG L+RLHAPR+SYNFKDDMEVFSPLVDVQ
Sbjct: 380 SLTASGSGFTSNILNVSTAEETPQRNHLWPGGTLSRLHAPRASYNFKDDMEVFSPLVDVQ 439

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           P+ PS   LWD   G KKD+L  D+KP  +LFPSSSRRF  +ED +++H V DWKS ST+
Sbjct: 440 PLAPS---LWD-ENGIKKDNLFADRKP--LLFPSSSRRFSNSEDVTSDHPVSDWKSGSTA 493

Query: 349 KQDDAR-SFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTS 407
           KQD A+ SF L+GSTP PSSK+EDSSITPPEAWGGE+LSDK+A  RQP+N PSR+GM  S
Sbjct: 494 KQDIAQSSFPLVGSTPPPSSKNEDSSITPPEAWGGERLSDKYAYTRQPVNAPSRFGMLAS 553

Query: 408 SGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFP 467
           +G T+ SM SGLQD S S   +SS T S+LS  N+R KD +S QET SLGF +H+ S+  
Sbjct: 554 AGQTAGSMLSGLQDTS-SSVGVSSYTSSSLSFANLRAKDASSSQET-SLGFTDHMFSTSL 611

Query: 468 SLSLGTKGILGSG-----NLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVG 516
            +S+ TK  LG        LDS R SS        RR  TYAERISTTS    G SLSVG
Sbjct: 612 PMSINTKTSLGQAIDSPKILDSPRMSSFN------RRFSTYAERISTTSTLSDGVSLSVG 665

Query: 517 SPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPP 551
           SPK KK+GAET+EELL++ L +SD SA +E G  P
Sbjct: 666 SPKIKKSGAETREELLNSLLLKSDISAPIESGSLP 700

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553817|ref|XP_003545248.1| PREDICTED: protein NEDD1-like [Glycine max]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/576 (66%), Positives = 444/576 (77%), Gaps = 41/576 (7%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDL+LHNLASG KAAELKDPN+Q+LRVLDYSR SRHLLVTAGDDG
Sbjct: 192 MYNCKDEHLASISLSGDLMLHNLASGQKAAELKDPNQQMLRVLDYSRVSRHLLVTAGDDG 251

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGRSPKVSW+K HSAPTAGISFS S+DKIIASVGLDKK+Y YD GSRRPSS I
Sbjct: 252 TVHLWDTTGRSPKVSWIKPHSAPTAGISFSPSNDKIIASVGLDKKMYIYDSGSRRPSSYI 311

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD W+L AGTSNGRV FYD+RGKPQP+ VL A  SSEAV+SLCWQR+K
Sbjct: 312 SYEAPFSSLAFRDDGWMLAAGTSNGRVAFYDVRGKPQPVAVLHAYGSSEAVTSLCWQRSK 371

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE  C AETAL+G  V DSILMPDPLPS T+S+ SLST+V+ +R +   G S + S
Sbjct: 372 PVVVDERNCSAETALVGDTVEDSILMPDPLPSATSSNNSLSTSVASTRNSGWLGASFDGS 431

Query: 240 SLTVGGTG-----------EETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SL   G+G           EETPQR++L PGG L+RLHAPR+SYNFKDDMEVFSPLVDVQ
Sbjct: 432 SLMASGSGFTSSILNASTAEETPQRNHLWPGGTLSRLHAPRASYNFKDDMEVFSPLVDVQ 491

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           P+TPS   LWD   G KKD+L  D+KP  +LFPSSSRRF  +EDG+++H + DWKS ST+
Sbjct: 492 PLTPS---LWD-ENGIKKDNLFSDRKP--LLFPSSSRRFSNSEDGTSDHPISDWKSGSTT 545

Query: 349 KQDDAR-SFALLGST-PSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMST 406
           KQD  + SF L+GST P PSSK+EDSSITPPEAWGGE+LSDK+A  RQP+N PSR+G+  
Sbjct: 546 KQDITQSSFPLVGSTPPPPSSKNEDSSITPPEAWGGERLSDKYAYTRQPVNAPSRFGVLA 605

Query: 407 SSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSF 466
           S+G T+ SM SGLQD S S   +SS T S+LS  N+R KD +S QET SLGF +H+ S+ 
Sbjct: 606 SAGQTAGSMLSGLQDTS-SSVGVSSYTSSSLSFANLRAKDASSSQET-SLGFTDHMFSA- 662

Query: 467 PSLSLGTKGILGSG-----NLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSV 515
             +S+ TK  LG        LDS R SS        RR  TYAERISTTS    G SLSV
Sbjct: 663 -PMSINTKTSLGQAIDSPKILDSPRMSSFN------RRFSTYAERISTTSTLSDGVSLSV 715

Query: 516 GSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPP 551
           GSPK KK+GAET+EELL++ L +SD SA +E G  P
Sbjct: 716 GSPKIKKSGAETREELLNSLLLKSDISAPIESGSLP 751

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492447|ref|XP_003616512.1| Protein NEDD1 [Medicago truncatula] gi|355517847|gb|AES99470.1| Protein NEDD1 [Medicago truncatula]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/565 (66%), Positives = 432/565 (76%), Gaps = 25/565 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYNCKDEHLASISLSGDLILHNLASG +AAELKDPN+Q+LRVLDYSR SRHLL TAGDDG
Sbjct: 142 MYNCKDEHLASISLSGDLILHNLASGQRAAELKDPNQQMLRVLDYSRVSRHLLTTAGDDG 201

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T+HLWDTTGRSPKVSWLKQHSAPTAGISFS S+DKIIASVGLDKKLYTYD GSRRP+SCI
Sbjct: 202 TVHLWDTTGRSPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDSGSRRPTSCI 261

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           + EAPFSSLAF DD W+L AGTSNGRV FYD+RGKPQP  VL A  SSEAV+SLCWQR+K
Sbjct: 262 SCEAPFSSLAFRDDGWMLAAGTSNGRVAFYDVRGKPQPFGVLHAYGSSEAVTSLCWQRSK 321

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE  C AE AL+G +V DSILMPDPLPS T+SS+S ST+VS +  + R   S + S
Sbjct: 322 PVIVDERNCTAEIALVGDSVEDSILMPDPLPSATSSSISQSTSVSSTWNSGRLSTSIDTS 381

Query: 240 SLTV--GG---------TGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
           SL    GG         TGEETP R++L PGG L+RLHAPR SYNFKDDMEVFSP+VDV 
Sbjct: 382 SLATSSGGFITSLQNVSTGEETPLRNHLWPGGTLSRLHAPRGSYNFKDDMEVFSPIVDVT 441

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           P+TPS   LWD   G KKD L  D+KP  MLFPS+SRRFP +ED S++HS+ DWKS  T+
Sbjct: 442 PLTPS---LWD-ENGVKKDSLFSDRKP--MLFPSASRRFPSSEDVSSDHSIADWKSGPTA 495

Query: 349 KQDDAR-SFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTS 407
           KQD  + SF L+G TP  S+KSE+SSITPPEAWGGEKL DK+   RQP+N PSR+GM  S
Sbjct: 496 KQDITQSSFPLVGLTPPASAKSEESSITPPEAWGGEKLPDKYTYTRQPVNAPSRFGMLAS 555

Query: 408 SGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFP 467
           SG T+ SM SGLQD + S + ISS T S+L+  N+RTKDV++ QET SLGF +HL S+  
Sbjct: 556 SGQTAGSMISGLQD-TFSSSGISSYTSSSLNFSNLRTKDVSTGQET-SLGFTDHLFSTSM 613

Query: 468 SLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS--GTSLSVGSPKTKKT 523
            LS+ TK  LG  N+DS + S         +R  +YAERI T S  G   SVGSPK KK+
Sbjct: 614 PLSISTKTSLGQANIDSPKISDSPRMSSFSKRISSYAERIGTASSFGDGASVGSPKIKKS 673

Query: 524 GAETKEELLSNFLSRSDTSAVVEPG 548
           GAET+EELL++ L +SD S   E G
Sbjct: 674 GAETREELLNSLLLKSDVSIPTESG 698

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459552|ref|XP_002284487.1| PREDICTED: protein NEDD1-like [Vitis vinifera]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/564 (65%), Positives = 425/564 (75%), Gaps = 26/564 (4%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           MYN KDEHLASISL+G LILHNLASGAK AELKDPN+QVLRVLDYSR SRHLLVTAGDDG
Sbjct: 143 MYNYKDEHLASISLNGVLILHNLASGAKVAELKDPNQQVLRVLDYSRISRHLLVTAGDDG 202

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWDTTG SPKVSWLKQHSAPTAG++FS S+DK+IASVGLDKKLYT+D GSRRPS CI
Sbjct: 203 SIHLWDTTGHSPKVSWLKQHSAPTAGVTFSPSNDKMIASVGLDKKLYTFDRGSRRPSFCI 262

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
            YE PFSSLAF DD W L AGTS+G+VVFYD+RGKPQP ++L A  +SEAV+SLCWQR+K
Sbjct: 263 PYEMPFSSLAFRDDGWTLAAGTSHGQVVFYDVRGKPQPFSILCAYGNSEAVTSLCWQRSK 322

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEAS 239
           PV +DE+ C  E AL+GGA  DS+++PDPLPSVT+SS+SLS A+ GS+   R GPS EAS
Sbjct: 323 PVIVDESNCSPEIALMGGATEDSVIIPDPLPSVTSSSLSLSMALPGSQNPGRIGPSTEAS 382

Query: 240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
           SLT      ETP RS+LR GG LA+L AP S Y FKDDMEVFSPLVDVQP+TP+LDKLWD
Sbjct: 383 SLT------ETPSRSHLRLGGTLAKLRAPHSGYTFKDDMEVFSPLVDVQPLTPTLDKLWD 436

Query: 300 GHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALL 359
            HEGAKKD+LP DKKPSS LF S SRR   AE   N H +F+WKS+STS+QD   S    
Sbjct: 437 DHEGAKKDYLPFDKKPSS-LFSSPSRRSSIAEGEGNNHPIFNWKSNSTSRQDTHASLTAP 495

Query: 360 GSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGL 419
           GS+ + S KSEDSSITPP+AWGGE+ SDKF   RQP    SR+GM  +SGL S SM+SGL
Sbjct: 496 GSSTTSSFKSEDSSITPPKAWGGERFSDKFTHHRQP--TLSRFGMLAASGLASGSMFSGL 553

Query: 420 QDV--SLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGIL 477
           Q++  S S  S SS ++ NL+  N+R KD +  QET  LG PE+  S   SL L TK + 
Sbjct: 554 QELWSSTSHMSGSSSSNQNLTFGNLRAKDFSFNQET-PLGVPENFPSISVSLPLDTKAVT 612

Query: 478 GSGNLD-SSRPSSLTLTHREPRR--TYAERISTT----SGTSLSVGSPKTKKTGAETKEE 530
              NL+    P+SLTL    PRR  TYAERISTT     GTS  VGSPK KKTGAET+ E
Sbjct: 613 RQANLELPGSPASLTL----PRRFSTYAERISTTLSSSDGTS-PVGSPKIKKTGAETRAE 667

Query: 531 LLSNFLSRSDTSAVVEPGIPPAIN 554
           +L N L  S TSA  E G  P +N
Sbjct: 668 IL-NGLFNSVTSAASEAGTHPMVN 690

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566510|ref|XP_002524240.1| protein with unknown function [Ricinus communis] gi|223536517|gb|EEF38164.1| protein with unknown function [Ricinus communis]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 398/576 (69%), Positives = 456/576 (79%), Gaps = 32/576 (5%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           +YNCKDEHLASISL+GDLILHNLASGA+AAELKDPNEQVLRVLDYSR SRHLLVTAGDDG
Sbjct: 140 LYNCKDEHLASISLNGDLILHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDG 199

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           ++HLWDTTGR+PKVSWLKQHSAPTAGISFS S+DKIIASVGLDKKLYT+D GSRRPSSCI
Sbjct: 200 SVHLWDTTGRNPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTFDAGSRRPSSCI 259

Query: 120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
           +YEAPFSSLAF DD  IL AGTS+GRVVFYD+RGKPQP  VLRA SSSEAV+SLCWQR+K
Sbjct: 260 SYEAPFSSLAFRDDGLILAAGTSSGRVVFYDVRGKPQPFNVLRAFSSSEAVTSLCWQRSK 319

Query: 180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSR-------- 231
           PV ++E+ C AETALLGGA+ DSILMPDPLPSVT SSVSLST VS SR   R        
Sbjct: 320 PVVVNESNCTAETALLGGAIEDSILMPDPLPSVTLSSVSLSTVVSSSRNTGRSSLSIESS 379

Query: 232 ---SGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288
              S  S  ASS+      EETP R++L  GG L+RL+APRSSYNFKDDM+VFSP+VDVQ
Sbjct: 380 SLTSTSSGSASSIASLSLAEETPHRNHLWLGGTLSRLNAPRSSYNFKDDMDVFSPVVDVQ 439

Query: 289 PITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348
           PITPSLDKLW  +EGAKKD+L +DKKPSS+   SSSRRFP++EDG+N+H +FDWK+SSTS
Sbjct: 440 PITPSLDKLWGDNEGAKKDNLSVDKKPSSLF-SSSSRRFPFSEDGANDHPIFDWKTSSTS 498

Query: 349 KQDDAR-SFALL-GSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMST 406
           +QD+ R S +LL GSTPSPSS SE+SSITPPEAWGGE+LSDK A  RQPL   SR+GM  
Sbjct: 499 RQDETRSSLSLLGGSTPSPSSNSEESSITPPEAWGGERLSDKLAHQRQPL---SRFGMLA 555

Query: 407 SSGLTSSSMYSGLQDV--SLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSS 464
           S GLTS S++SGLQD+  S SQT +SSL  S  S  N+RTKD++  QET + G PE+ +S
Sbjct: 556 SGGLTSGSLFSGLQDLSSSTSQTIMSSLASSYFSFPNIRTKDISINQETLT-GLPENNTS 614

Query: 465 SFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRR--TYAERISTTS----GTSLSVGSP 518
           S  S SLGTK  +G  + D   P   TL    PR+  +YAER ST S    GTS +V SP
Sbjct: 615 SI-SQSLGTKSNIGPADADLPGPGIFTL----PRKLSSYAERTSTVSSFGDGTSPAVNSP 669

Query: 519 KTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAIN 554
           K KKTGAET+EELLS+ LSRSDT A  E G  P +N
Sbjct: 670 KMKKTGAETREELLSSLLSRSDTLAGTESGNLPIMN 705

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
TAIR|locus:2153629	782	NEDD1 "AT5G05970" [Arabidopsis	0.933	0.677	0.497	2.5e-129
UNIPROTKB|F1SQR9	390	NEDD1 "Uncharacterized protein	0.292	0.425	0.323	9.4e-20
UNIPROTKB|Q3B7M6	659	NEDD1 "Protein NEDD1" [Bos tau	0.292	0.251	0.329	1.9e-19
UNIPROTKB|E2R5C6	734	NEDD1 "Uncharacterized protein	0.292	0.226	0.317	1.5e-18
UNIPROTKB|Q8NHV4	660	NEDD1 "Protein NEDD1" [Homo sa	0.292	0.251	0.317	1.5e-18
UNIPROTKB|G3V3F1	667	NEDD1 "Neural cell expressed,	0.292	0.248	0.317	1.6e-18
UNIPROTKB|F1P0W9	671	NEDD1 "Uncharacterized protein	0.281	0.238	0.333	5.7e-18
MGI|MGI:97293	660	Nedd1 "neural precursor cell e	0.292	0.251	0.305	7.2e-18
RGD|1307750	659	Nedd1 "neural precursor cell e	0.292	0.251	0.305	9.2e-18
ZFIN|ZDB-GENE-040426-2906	677	nedd1 "neural precursor cell e	0.290	0.243	0.327	9.8e-16

TAIR|locus:2153629 NEDD1 "AT5G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 284/571 (49%), Positives = 347/571 (60%)

Query:     1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
             MYNCKDEHLAS+S+ GDLI+HNLASGA+A ELKDPN QVLR+LDYSR+SRHLLVTAGDDG
Sbjct:   142 MYNCKDEHLASVSVGGDLIVHNLASGARATELKDPNGQVLRLLDYSRSSRHLLVTAGDDG 201

Query:    61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
             T+HLWDTTGRSPK+SWLKQHSAPTAG+ FS S++KIIASVG+DKKLYTYD GSRR SSCI
Sbjct:   202 TVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCI 261

Query:   120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179
              YEAPFSSLAF D+ +IL AGTSNGRVVFYDIRGKPQP+TVL A S+SE V+SL WQ +K
Sbjct:   262 AYEAPFSSLAFGDNGYILVAGTSNGRVVFYDIRGKPQPVTVLHAFSNSEDVTSLSWQTSK 321

Query:   180 PVFIDETTCKAETALLGGAVGDSILMPDPLPXXXXXXXXXXXXXXXXXXXXXXXXXAEAS 239
             PV ++E    +E ALLG  V DS+++PDPLP                           AS
Sbjct:   322 PVIVNEKNYTSEMALLGSTVEDSVVIPDPLPSTTPSASQSAMAPGSRGVSAST---VNAS 378

Query:   240 SLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWD 299
             S+      E+TP R++L P GPL RLHA R++ ++ DDM VFSP++DV     S++K W 
Sbjct:   379 SV------EQTPNRNHLWPSGPLGRLHALRANDSYNDDMGVFSPIIDVS----SVEK-WA 427

Query:   300 GHEGAK-KDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARS-FA 357
               EG   KDHL +D KPSS+LFPSSS+ + + ++GS EH +FDWK SSTSKQDD R+ F+
Sbjct:   428 DSEGYNNKDHLVVDNKPSSLLFPSSSKGYSFGDNGSKEHPIFDWKPSSTSKQDDPRAAFS 487

Query:   358 LLGXXXXXXXXXXXXXXXXX-EAWGGEKLSDKFALLRQP--------LNMPSRXXXXXXX 408
               G                  EAWGG+K S+KF  L           L+ PSR       
Sbjct:   488 SFGSITPTASSKSEDSALTPPEAWGGDKFSEKFNQLANEKFSDKFSHLHAPSRLAVSSTG 547

Query:   409 XXXXXXXXXXXQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPS 468
                        +D  LS    +    +N S E  R +D +S  ETSS        ++ PS
Sbjct:   548 ASTSGSMFSSSRDFPLSHGQTNF---ANASLEFPRIRDFSSTFETSST----QTDNNLPS 600

Query:   469 LSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERIXXXXXXXXXXX-----XPXXXXX 523
               L TKGI   GN+DS R S    T R    TYAERI                 P     
Sbjct:   601 SPLFTKGITAPGNIDSLRLSP-NFTRRFS--TYAERISTTSSFSDGASLSLGGSPKIKKT 657

Query:   524 XXXXXXXLLSNFLSRSDTSAVVEPGIPPAIN 554
                    +L++ L+R +T    E G  P +N
Sbjct:   658 GSETREEVLNHLLARPETVVATEAGAMPLMN 688

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000919 "cell plate assembly" evidence=IMP

GO:0005828 "kinetochore microtubule" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0032467 "positive regulation of cytokinesis" evidence=IMP

GO:0060236 "regulation of mitotic spindle organization" evidence=IMP

GO:2000694 "regulation of phragmoplast microtubule organization" evidence=IMP

UNIPROTKB|F1SQR9 NEDD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 256 (95.2 bits), Expect = 9.4e-20, P = 9.4e-20
 Identities = 54/167 (32%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  S+   H AP + I FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSPYHSFDSAHKAPASAIGFSPVNELLFVTIGLDKRIILYDTSSKKIVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              +AP +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADAPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0045177 "apical part of cell" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

UNIPROTKB|Q3B7M6 NEDD1 "Protein NEDD1" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 55/167 (32%), Positives = 95/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSIRHLKYSLFKKSLLGSVSDNGI 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  +VGLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTVGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              +AP +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADAPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPIKTISAHKTS 293

GO:0045177 "apical part of cell" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|E2R5C6 NEDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 53/167 (31%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   203 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 262

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   263 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 322

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   323 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 369

GO:0045177 "apical part of cell" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000242 "pericentriolar material" evidence=IEA

UNIPROTKB|Q8NHV4 NEDD1 "Protein NEDD1" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 53/167 (31%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|G3V3F1 NEDD1 "Neural cell expressed, developmentally down-regulated 1, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 53/167 (31%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D+G 
Sbjct:   134 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 193

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +SP  ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   194 VTLWDVNSQSPYHNFDSVHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 253

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   254 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 300

GO:0000242 "pericentriolar material" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

UNIPROTKB|F1P0W9 NEDD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 54/162 (33%), Positives = 93/162 (57%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      + Q +R L YS   + LL +  D G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGYNSSQPIRHLKYSSFKKSLLGSVSDSGN 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   ++P  ++   H AP + I FS  ++ ++ +VGLDK++  YD  S++  + I 
Sbjct:   187 VTLWDVNTQNPYRNFENTHKAPASEICFSPVNELLLVTVGLDKRINLYDTSSKKLLTTIV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVL 161
              + P +++ F+ D   LT G+S G++  YD+R    P+ TV+
Sbjct:   247 ADHPLTTVNFMPDGTTLTIGSSRGKICQYDLRRLTSPVKTVI 288

GO:0000242 "pericentriolar material" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005814 "centriole" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

MGI|MGI:97293 Nedd1 "neural precursor cell expressed, developmentally down-regulated gene 1" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 7.2e-18, P = 7.2e-18
 Identities = 51/167 (30%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      ++Q +R + YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGV 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +S   ++   H AP +GI FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSSYHTFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0000242 "pericentriolar material" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0000924 "gamma-tubulin ring complex, centrosomal" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005814 "centriole" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0007019 "microtubule depolymerization" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031109 "microtubule polymerization or depolymerization" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0070201 "regulation of establishment of protein localization" evidence=ISO

RGD|1307750 Nedd1 "neural precursor cell expressed, developmentally down-regulated 1" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 9.2e-18, P = 9.2e-18
 Identities = 51/167 (30%), Positives = 94/167 (56%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
             YN  D ++AS SLSG++ILH++ +   +      ++Q +R + YS   + LL +  D+G 
Sbjct:   127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPVRHIKYSLFRKSLLGSVSDNGV 186

Query:    62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT 120
             + LWD   +S   S+   H AP +G+ FS  ++++  ++GLDK++  YD  S++    + 
Sbjct:   187 VTLWDVNSQSAYHSFDSTHKAPASGLCFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLV 246

Query:   121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
              + P +++ F+ D   L  G+S G++  YD+R    P+  + A  +S
Sbjct:   247 ADTPLTAVDFMPDGASLAIGSSRGKIYQYDLRMLKSPVKTISAHKTS 293

GO:0000242 "pericentriolar material" evidence=IEA;ISO

GO:0000922 "spindle pole" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=IEA;ISO

GO:0005932 "microtubule basal body" evidence=IEA;ISO

GO:0045177 "apical part of cell" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-2906 nedd1 "neural precursor cell expressed, developmentally down-regulated 1" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 55/168 (32%), Positives = 88/168 (52%)

Query:     2 YNCKDEHLASISLSGDLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
             +N  D ++AS S SGD+ILH++ +   +      PN  +   L YS   R LL T  D G
Sbjct:   127 FNGGDSYIASGSTSGDIILHSITTNLSSKPFGHGPNVPI-HDLRYSLVKRSLLGTVSDSG 185

Query:    61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
             ++ LWD   +     +   H AP +G++FS ++D +  +VGLDKK+  YD  S+      
Sbjct:   186 SVALWDANTQKELHLFEGAHKAPCSGLAFSPANDLLFVTVGLDKKIVCYDTSSKIVFRNK 245

Query:   120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
               E+P +++ F  D   L  G++ GR+  YD+R    P+ +  A  +S
Sbjct:   246 QVESPLTAIDFTPDGAGLVVGSTQGRIYLYDLRNLSAPVKINTAHKTS 293

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=IDA

GO:0071539 "protein localization to centrosome" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_VIII000230 hypothetical protein (785 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	568
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 41  RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG 100
             + +S + + LL T   DGT+ +WD        + LK H+ P   ++ S+D   +AS  
Sbjct: 13  TCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-LKGHTGPVRDVAASADGTYLASGS 70

Query: 101 LDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159
            DK +  +D  +      +T + +  SS+AF  D  IL++ + +  +  +D+    + LT
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLT 129

Query: 160 VLRACSSSEAVSSLCW 175
            LR  +    V+S+ +
Sbjct: 130 TLRGHTDW--VNSVAF 143

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 36/168 (21%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 9   LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68
           L+S S    + + ++ +G     L+   + V   + +S +    + ++  DGT+ LWD  
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NSVAFSPDGT-FVASSSQDGTIKLWDLR 165

Query: 69  GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFSS 127
                 + L  H+     ++FS D + + S   D  +  +D  + +    +   E   +S
Sbjct: 166 TGKCVAT-LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
           +AF  D ++L +G+ +G +  +D+R   + +  L     + +V+SL W
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTLSG--HTNSVTSLAW 269

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 13/179 (7%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
             +    +LAS S    + L +L +G     L      V  V  +S     +L ++  D 
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-AFS-PDGRILSSSSRDK 115

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           T+ +WD        + L+ H+     ++FS D   +AS   D  +  +D  +     C+ 
Sbjct: 116 TIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVA 171

Query: 121 ----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW 175
               +    +S+AF  D   L + +S+G +  +D+    + L  LR       V+S+ +
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLR--GHENGVNSVAF 227

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 9   LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68
           +AS S  G + L +L +G   A L     +V  V  +S +   LL ++  DGT+ LWD +
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV-AFSPDGEKLL-SSSSDGTIKLWDLS 207

Query: 69  GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSS 127
                +  L+ H      ++FS D  ++AS   D  +  +D  +      ++ +    +S
Sbjct: 208 TGK-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266

Query: 128 LAFIDDDWILTAGTSNGRVVFYD 150
           LA+  D   L +G+++G +  +D
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 3e-08
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 5/250 (2%)

Query: 9   LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68
            +  SL G + L +L +G   + L    + V   L +S +   L+ +   DGT+ LWD +
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV-SSLAFSPDGGLLIASGSSDGTIRLWDLS 229

Query: 69  GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFS 126
                 S L  HS      SFS D  ++AS   D  +  +D  S            +   
Sbjct: 230 TGKLLRSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 127 SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186
           S+AF  D  +L +G+S+G V  +D+    + L+ L        VSSL +     + +   
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347

Query: 187 TCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGT 246
           +      L     G  +   +   +V + S S    V  S     +    + S+ ++   
Sbjct: 348 SDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407

Query: 247 GEETPQRSYL 256
            +    R   
Sbjct: 408 LDGHTSRVTS 417

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 8   HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67
            +AS S  G + L +L++G         +   + V  +S +   LL +   DGT+ LWD 
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDL 270

Query: 68  TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD---PGSRRPSSCITYEAP 124
              S  +  L  HS+    ++FS D K++AS   D  +  +D          +   +E P
Sbjct: 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330

Query: 125 FSSLAF-IDDDWILTAGTSNGRVVFYDIRGKPQPLT 159
            SSL+F  D   +++ G+ +G +  +D+R      T
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGD- 58
           ++   E L S S  G + L +L +G K   +     +  V ++   S +   +L+ +   
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 59  DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS 117
           DGT+ LWD +     +  L+ HS     ++FS D K++AS   LD  +  +D  + +P S
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 118 CIT-YEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRACSSS 167
            +  +  P SSLAF  D  +L A  S +G +  +D+       + L   S S
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	568
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0286	343	consensus G-protein beta subunit [General function	99.92
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.91
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.9
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0286	343	consensus G-protein beta subunit [General function	99.9
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.9
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.9
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.89
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0266	456	consensus WD40 repeat-containing protein [General	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.89
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.88
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.87
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.87
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.87
KOG0645	312	consensus WD40 repeat protein [General function pr	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
PTZ00420	568	coronin; Provisional	99.87
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.86
PTZ00420	568	coronin; Provisional	99.86
PTZ00421	493	coronin; Provisional	99.85
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.85
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.85
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.85
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.85
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.85
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.84
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.84
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.83
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.83
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.83
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.83
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.82
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.82
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.82
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.82
KOG0645	312	consensus WD40 repeat protein [General function pr	99.82
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.82
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.82
KOG0643	327	consensus Translation initiation factor 3, subunit	99.81
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.81
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.81
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.81
KOG0289	506	consensus mRNA splicing factor [General function p	99.81
KOG0296	399	consensus Angio-associated migratory cell protein	99.8
KOG0646	476	consensus WD40 repeat protein [General function pr	99.8
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.8
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.8
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.79
KOG0296	399	consensus Angio-associated migratory cell protein	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.78
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.78
KOG0639	705	consensus Transducin-like enhancer of split protei	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.78
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.78
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.78
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.77
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.77
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.77
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.77
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.77
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.77
KOG0267	825	consensus Microtubule severing protein katanin p80	99.76
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.76
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.75
KOG0289	506	consensus mRNA splicing factor [General function p	99.75
KOG0641	350	consensus WD40 repeat protein [General function pr	99.74
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.74
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.74
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.73
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.73
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.73
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.73
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.72
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.72
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.71
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.71
KOG0643	327	consensus Translation initiation factor 3, subunit	99.71
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.71
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.7
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.69
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.69
KOG1274	933	consensus WD40 repeat protein [General function pr	99.68
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.68
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.68
KOG0641	350	consensus WD40 repeat protein [General function pr	99.68
KOG0267	825	consensus Microtubule severing protein katanin p80	99.68
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.68
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.67
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.67
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.65
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.64
KOG2096	420	consensus WD40 repeat protein [General function pr	99.64
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.63
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.63
KOG1273	405	consensus WD40 repeat protein [General function pr	99.62
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.62
KOG1188	376	consensus WD40 repeat protein [General function pr	99.62
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.61
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.6
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.6
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.6
KOG1539	910	consensus WD repeat protein [General function pred	99.6
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.6
KOG2055	514	consensus WD40 repeat protein [General function pr	99.59
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.59
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG4328	498	consensus WD40 protein [Function unknown]	99.58
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.58
KOG2055	514	consensus WD40 repeat protein [General function pr	99.58
KOG2048	691	consensus WD40 repeat protein [General function pr	99.58
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.58
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.57
KOG1274	933	consensus WD40 repeat protein [General function pr	99.57
KOG2096	420	consensus WD40 repeat protein [General function pr	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
KOG0639	705	consensus Transducin-like enhancer of split protei	99.56
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.55
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.55
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.54
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.53
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.53
KOG0649	325	consensus WD40 repeat protein [General function pr	99.52
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.51
KOG1539	910	consensus WD repeat protein [General function pred	99.51
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.51
KOG1273	405	consensus WD40 repeat protein [General function pr	99.5
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.5
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.5
KOG0646	476	consensus WD40 repeat protein [General function pr	99.5
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.49
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.48
COG2319	466	FOG: WD40 repeat [General function prediction only	99.48
KOG4328	498	consensus WD40 protein [Function unknown]	99.47
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.47
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.47
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.47
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.45
KOG2048	691	consensus WD40 repeat protein [General function pr	99.45
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.44
COG2319	466	FOG: WD40 repeat [General function prediction only	99.43
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.41
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.37
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.37
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.36
KOG1188	376	consensus WD40 repeat protein [General function pr	99.36
PRK01742	429	tolB translocation protein TolB; Provisional	99.35
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.35
KOG4227	609	consensus WD40 repeat protein [General function pr	99.34
KOG1310	758	consensus WD40 repeat protein [General function pr	99.33
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.33
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.33
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.32
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.32
KOG4227	609	consensus WD40 repeat protein [General function pr	99.31
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.31
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.3
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.29
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.29
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.28
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG1310	758	consensus WD40 repeat protein [General function pr	99.25
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.21
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.21
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.21
PRK01742	429	tolB translocation protein TolB; Provisional	99.2
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.19
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.18
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.16
KOG0649	325	consensus WD40 repeat protein [General function pr	99.15
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.14
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.13
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.13
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.13
KOG4547	541	consensus WD40 repeat-containing protein [General	99.12
PRK03629	429	tolB translocation protein TolB; Provisional	99.1
PRK05137	435	tolB translocation protein TolB; Provisional	99.1
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.08
KOG2321	703	consensus WD40 repeat protein [General function pr	99.05
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.05
PRK04922	433	tolB translocation protein TolB; Provisional	99.04
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.03
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.02
KOG1963	792	consensus WD40 repeat protein [General function pr	99.01
PRK01029	428	tolB translocation protein TolB; Provisional	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.98
PRK02889	427	tolB translocation protein TolB; Provisional	98.98
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.96
PRK01029	428	tolB translocation protein TolB; Provisional	98.96
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.96
KOG2321	703	consensus WD40 repeat protein [General function pr	98.92
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.91
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.91
KOG1334	559	consensus WD40 repeat protein [General function pr	98.89
KOG1963	792	consensus WD40 repeat protein [General function pr	98.89
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.89
KOG2139	445	consensus WD40 repeat protein [General function pr	98.88
PRK00178	430	tolB translocation protein TolB; Provisional	98.87
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.85
PRK04792	448	tolB translocation protein TolB; Provisional	98.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.78
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.77
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.73
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.72
KOG2315	566	consensus Predicted translation initiation factor	98.71
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.69
COG4946	668	Uncharacterized protein related to the periplasmic	98.67
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.65
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.61
KOG4547	541	consensus WD40 repeat-containing protein [General	98.6
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.6
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.55
KOG1334	559	consensus WD40 repeat protein [General function pr	98.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.5
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.49
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.48
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.45
COG4946	668	Uncharacterized protein related to the periplasmic	98.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.4
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.34
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.33
KOG2315	566	consensus Predicted translation initiation factor	98.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.22
PRK04043	419	tolB translocation protein TolB; Provisional	98.2
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.2
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.18
KOG2695	425	consensus WD40 repeat protein [General function pr	98.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.18
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.16
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.15
KOG2695	425	consensus WD40 repeat protein [General function pr	98.12
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.09
KOG2314	698	consensus Translation initiation factor 3, subunit	98.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.03
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.01
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.99
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.91
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.9
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.83
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.83
PRK02888	635	nitrous-oxide reductase; Validated	97.81
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.77
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.72
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.69
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.66
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.63
KOG2314	698	consensus Translation initiation factor 3, subunit	97.62
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.61
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.59
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.55
KOG3621	726	consensus WD40 repeat-containing protein [General	97.42
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.4
COG3391	381	Uncharacterized conserved protein [Function unknow	97.36
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.33
PRK02888	635	nitrous-oxide reductase; Validated	97.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.24
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.16
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.09
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.07
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.06
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.05
KOG3621	726	consensus WD40 repeat-containing protein [General	97.02
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.01
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.96
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.88
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.83
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.8
COG3391	381	Uncharacterized conserved protein [Function unknow	96.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.79
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.77
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.51
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.5
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.44
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.4
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.4
KOG2395	644	consensus Protein involved in vacuole import and d	96.34
PRK13616	591	lipoprotein LpqB; Provisional	96.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.21
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.17
PRK13616	591	lipoprotein LpqB; Provisional	96.12
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.01
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.88
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.87
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.83
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.73
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.63
PHA02713	557	hypothetical protein; Provisional	95.63
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.55
KOG2444	238	consensus WD40 repeat protein [General function pr	95.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.31
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.16
KOG2395	644	consensus Protein involved in vacuole import and d	95.14
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.04
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.02
KOG2444	238	consensus WD40 repeat protein [General function pr	94.93
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.87
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.28
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.23
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.22
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.17
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.13
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.0
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.98
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.85
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.73
PHA03098	534	kelch-like protein; Provisional	93.64
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.6
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.5
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.48
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.42
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.37
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.95
PRK10115	686	protease 2; Provisional	92.92
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.91
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.47
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.38
COG5276	370	Uncharacterized conserved protein [Function unknow	92.38
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.22
KOG2247	615	consensus WD40 repeat-containing protein [General	92.19
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.87
PHA02713	557	hypothetical protein; Provisional	91.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.22
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.57
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.52
PHA02790	480	Kelch-like protein; Provisional	90.46
PLN02153	341	epithiospecifier protein	90.22
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.19
PHA03098	534	kelch-like protein; Provisional	89.96
PRK10115	686	protease 2; Provisional	89.92
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.58
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.41
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.81
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.64
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.43
PRK13684	334	Ycf48-like protein; Provisional	88.41
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	88.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.74
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.6
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.82
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.71
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.66
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.58
PLN02153	341	epithiospecifier protein	84.57
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.36
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.34
PRK13684	334	Ycf48-like protein; Provisional	84.04
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	83.75
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	83.58
COG5167	776	VID27 Protein involved in vacuole import and degra	83.17
COG5167	776	VID27 Protein involved in vacuole import and degra	83.12
PHA02790	480	Kelch-like protein; Provisional	83.03
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.96
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	82.75
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.5
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.44
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.07
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.64
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	80.99
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	80.55

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-40  Score=341.72  Aligned_cols=456  Identities=25%  Similarity=0.339  Sum_probs=368.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +||..+.|||+++..|.|.|..+.++.....|.......|+-+.|++..+++|.+++++|.|.+||+.+..+.......|
T Consensus       128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H  207 (673)
T KOG4378|consen  128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH  207 (673)
T ss_pred             EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence            47899999999999999999999999988888876688899999999999999999999999999999999888999999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ..+...|+|+| +..+|++.+.|.+|.+||++..+....+....+...++|.++|.+|++|...|.|..||+|..+.|+.
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~  287 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA  287 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence            99999999999 78899999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecC--CCcEEcCCCCCCCccccccccccccCCCCCcccCCCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV--GDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAE  237 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~--Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~  237 (568)
                      ++.  .|...|++++|.+.. .+++...      +-.|+.  ++.|              ..      +.....+.+.  
T Consensus       288 v~s--ah~~sVt~vafq~s~-tvltkss------ln~G~~~~~~~v--------------n~------~s~~~~aat~--  336 (673)
T KOG4378|consen  288 VRS--AHDASVTRVAFQPSP-TVLTKSS------LNSGDNQQNGSV--------------NS------SSNATGAATE--  336 (673)
T ss_pred             Eee--ecccceeEEEeeecc-eeeeccc------cccCccCCCcee--------------cc------ccccccccCC--
Confidence            988  788899999999853 3333211      001110  1111              00      0011111111  


Q ss_pred             CccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcc-cccccCCCCCC
Q 008356          238 ASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAK-KDHLPIDKKPS  316 (568)
Q Consensus       238 ~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~-~~~~~~~~~~~  316 (568)
                        ...+....+++| +.++|+..+...|++-+..-+..++|-+|.|++++..+-.     |-+..|.. +|++.+|-++|
T Consensus       337 --g~rNsgiVe~aP-~~~l~~s~p~~~lsa~~~~ts~~~~~~g~p~iI~~ds~~k-----~~Ds~G~n~~d~~~~d~g~S  408 (673)
T KOG4378|consen  337 --GPRNSGIVERAP-SDELRKSIPANLLSAQNQLTSLGYGVSGTPTIIRRDSFCK-----FLDSQGPNAVDRMSTDLGAS  408 (673)
T ss_pred             --CCccccchhcCc-hhhhhhccCchhhhhhccccccccCccCCCceeehhhhhh-----hhhccCCccccceeeccCcc
Confidence              123566778999 7899999999999998888888899999999999876554     87777877 78999888885


Q ss_pred             ccccCCCCcccccccCCCceeeeeeccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCcCCCccchhhhcccCCC
Q 008356          317 SMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPL  396 (568)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (568)
                                 .|....+   ||+|          |   |..  .+|    |.++.+++  |   |+++  +|..+-...
T Consensus       409 -----------S~gD~fs---PIrD----------D---~~~--~n~----K~~d~~~~--k---Gd~f--~f~p~~ns~  448 (673)
T KOG4378|consen  409 -----------SYGDSFS---PIRD----------D---WET--LNR----KPQDYETA--K---GDRF--SFCPPVNSG  448 (673)
T ss_pred             -----------cccccCC---cccc----------c---hhh--cCC----CCCchhcc--c---cCcc--ccccccccC
Confidence                       2223233   6663          2   111  122    67777777  3   5666  444444444


Q ss_pred             CCCCcccccccCCcccccccccccccCccccccccccccccccccccccccccccccCCCCCCCCcCCCCCccccccccc
Q 008356          397 NMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGI  476 (568)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (568)
                      --|.|-.+ .+++.|++.|++.|.| ....+|...+.+..+.++..+  +++.++|+.+    +++.+++   .|.||++
T Consensus       449 fsp~~n~V-~Ss~ttS~~~~spl~d-f~~s~G~~~~~n~~lt~e~~~--~~s~~~e~~s----d~~~~s~---kl~t~gv  517 (673)
T KOG4378|consen  449 FSPVDNSV-NSSTTTSLQRNSPLKD-FSNSSGDGKLMNIALTDELCE--EQSANIEVAS----DTGGGSD---KLNTPGV  517 (673)
T ss_pred             CCcccCcc-cccccchhhccCcccc-ccCCCCcchhhcccccchHHH--Hhhcceeeec----cCCCCcc---cccCCCC
Confidence            45677776 4558999999999999 788888888888888888776  9999999995    6666666   8999999


Q ss_pred             cCCCCCCCCCCCCcccCcCCCCcchhcccccccCCccccCCCcccccchhhHHHHHhhhccccccccccCCCCCCccccC
Q 008356          477 LGSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINVR  556 (568)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (568)
                      .+++|+++. |.+ +++|+  +++|++||.+++--.+-.++||+||++.|          .|+++..++|+|.+|.+|++
T Consensus       518 ~a~gn~~~~-~lS-N~TRn--s~~~~~~i~~~s~~~~L~~~p~i~ksss~----------n~p~~~~a~~ag~~s~l~~~  583 (673)
T KOG4378|consen  518 DAEGNRRLR-LLS-NATRN--STPHHANITPQSSNPLLKPQPLIAKSSSG----------NLPAQMDADWAGEFSELRDF  583 (673)
T ss_pred             CCccccccc-ccc-ccccc--CCcccccCCCcccCccccCCcccccCCCC----------CCchhhhhhhhhhhHHHHHH
Confidence            999999998 666 99999  99999999999954444599999999999          38888999999999999999


Q ss_pred             CCce
Q 008356          557 IPIH  560 (568)
Q Consensus       557 ~~~~  560 (568)
                      +.|-
T Consensus       584 v~qs  587 (673)
T KOG4378|consen  584 VDQS  587 (673)
T ss_pred             HHhh
Confidence            8763

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-27  Score=240.69  Aligned_cols=282  Identities=15%  Similarity=0.220  Sum_probs=219.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      .|+|+|.+|++|+.|.++++||+.+......+++ |...|.|++|+|||+ .|++|+.||.|++||..++++....+.+|
T Consensus       122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH  199 (480)
T KOG0271|consen  122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGH  199 (480)
T ss_pred             EecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCc
Confidence            4899999999999999999999999999999997 888999999999998 79999999999999999988888999999


Q ss_pred             CCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           81 SAPTAGISFSS-----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        81 ~~~VtslafsP-----dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ...|++++|.|     .+++|++++.||.|+|||+..++++.++ +|..+|+|++|--+ .+|++|+.|++|++|+...+
T Consensus       200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence            99999999976     5689999999999999999999988887 89999999999865 48999999999999999886


Q ss_pred             CCceEEEeecCCCCCeeEEEEccC-----------CCe---------------EEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRA-----------KPV---------------FIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspd-----------g~~---------------Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                       ...+.++  +|..+|+.++.+.+           +++               -+++  ......|++++.|.++.+|+.
T Consensus       279 -~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~--~~~~erlVSgsDd~tlflW~p  353 (480)
T KOG0271|consen  279 -KLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL--KDSGERLVSGSDDFTLFLWNP  353 (480)
T ss_pred             -hHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh--ccCcceeEEecCCceEEEecc
Confidence             3445566  89999999988743           111               0111  113357999999999999985


Q ss_pred             CCCCccccccccccccCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccc
Q 008356          209 LPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ  288 (568)
Q Consensus       209 r~~~~~~s~~~s~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~  288 (568)
                      .....                                               ++.|...+..-+    -.+.|+|  |.-
T Consensus       354 ~~~kk-----------------------------------------------pi~rmtgHq~lV----n~V~fSP--d~r  380 (480)
T KOG0271|consen  354 FKSKK-----------------------------------------------PITRMTGHQALV----NHVSFSP--DGR  380 (480)
T ss_pred             ccccc-----------------------------------------------chhhhhchhhhe----eeEEECC--Ccc
Confidence            43221                                               000000000000    1234677  433


Q ss_pred             cCCC----CcccccccCcCcccccccCCCCCCc-cccCCCCcccccccCCCceeeeeeccC
Q 008356          289 PITP----SLDKLWDGHEGAKKDHLPIDKKPSS-MLFPSSSRRFPYAEDGSNEHSVFDWKS  344 (568)
Q Consensus       289 ~~~~----s~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (568)
                      -|+.    ..+++|+..+|..+..|-+|..+.- ++| |++.|+-.+.+...---+||-++
T Consensus       381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw-saDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  381 YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW-SADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe-ccCccEEEEcCCCceEEEEEeee
Confidence            2222    2389999999999999998865543 348 88888877766666666666643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.3e-27  Score=244.30  Aligned_cols=196  Identities=17%  Similarity=0.198  Sum_probs=175.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      .|+.|+++|++|+.+|.++||+..+...++.+.+ |...+.++.|+|. ...-+++|+.||+|++|++.+.. .+..+.+
T Consensus       182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-~l~~l~g  259 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-PLQDLEG  259 (459)
T ss_pred             EeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCCc-chhhhhc
Confidence            4789999999999999999999999999999998 7778899999998 35479999999999999998866 4778999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      |...|..++|+|+|++|++++.|.+-++||++++..+... +|...|.+++|++||.++++|+.|..-+|||+|++. .+
T Consensus       260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i  338 (459)
T KOG0272|consen  260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI  338 (459)
T ss_pred             chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence            9999999999999999999999999999999998766554 899999999999999999999999999999999985 34


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .++.  +|...|.+|+|+|+|-.|+++            +.|++++|||+|....
T Consensus       339 m~L~--gH~k~I~~V~fsPNGy~lATg------------s~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  339 MFLA--GHIKEILSVAFSPNGYHLATG------------SSDNTCKVWDLRMRSE  379 (459)
T ss_pred             EEec--ccccceeeEeECCCceEEeec------------CCCCcEEEeeeccccc
Confidence            4555  899999999999976555555            6699999999998665

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=7.3e-27  Score=255.61  Aligned_cols=195  Identities=18%  Similarity=0.290  Sum_probs=176.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      .|+|+.++|++++.|++|++|.+.+..++..+++ |..+|.++.|+|.|- +|++++.|++.++|..+...+ .+.+.+|
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P-lRifagh  534 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP-LRIFAGH  534 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCce-EEEecCCCceeeeeecccCCc-hhhhccc
Confidence            4899999999999999999999999999999996 888999999999985 999999999999999988774 7889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|.|+.|+|+.+|+++|+.|.+|++||+.+|..++.| +|.++|.+++|+|+|++|++|+.||.|.+||+.++. ++.
T Consensus       535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~  613 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVK  613 (707)
T ss_pred             ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-chh
Confidence            999999999999999999999999999999999999999 799999999999999999999999999999999974 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .+.  +|.+.|.++.|+.+|..||+            ++.|.+|++||+.....
T Consensus       614 ~l~--~Ht~ti~SlsFS~dg~vLas------------gg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  614 QLK--GHTGTIYSLSFSRDGNVLAS------------GGADNSVRLWDLTKVIE  653 (707)
T ss_pred             hhh--cccCceeEEEEecCCCEEEe------------cCCCCeEEEEEchhhcc
Confidence            444  79999999999997655544            46699999999876443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.5e-26  Score=238.28  Aligned_cols=200  Identities=21%  Similarity=0.272  Sum_probs=177.2

Q ss_pred             ccCC--CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpd--G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |+|.  +..||+|+.||+|++|++.+...+..+.+ |...|..++|+|+|+ +|+|++.|.+-++||+.++.. +....+
T Consensus       225 fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~E-lL~QEG  301 (459)
T KOG0272|consen  225 FHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSE-LLLQEG  301 (459)
T ss_pred             EccCCCccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCCc-eeeecccccchhhcccccchh-hHhhcc
Confidence            7786  56899999999999999988889999997 667778899999998 899999999999999998875 556789


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      |...|.+++|++||.++++|+.|..-+|||+|+++++..+ +|-.+|..++|+|+|..||+|+.|++++|||++.... +
T Consensus       302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-l  380 (459)
T KOG0272|consen  302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-L  380 (459)
T ss_pred             cccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-c
Confidence            9999999999999999999999999999999999998888 7999999999999999999999999999999998854 3


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                      ..  ..+|..-|+.|+|.|.           .+.+|++++.|+++++|..+.+.+...+.
T Consensus       381 y~--ipAH~nlVS~Vk~~p~-----------~g~fL~TasyD~t~kiWs~~~~~~~ksLa  427 (459)
T KOG0272|consen  381 YT--IPAHSNLVSQVKYSPQ-----------EGYFLVTASYDNTVKIWSTRTWSPLKSLA  427 (459)
T ss_pred             ee--cccccchhhheEeccc-----------CCeEEEEcccCcceeeecCCCcccchhhc
Confidence            33  3489999999999984           34456666889999999988887765543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-24  Score=215.00  Aligned_cols=190  Identities=19%  Similarity=0.319  Sum_probs=163.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H   80 (568)
                      .++||++.++++.|+.+++||+++++..+.|.+ |...|.+++|+++++ .+++|+.|.+|++|++.+... ...... +
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-~t~~~~~~  147 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-YTIHEDSH  147 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE-EEEecCCC
Confidence            478999999999999999999999999999998 666778899999998 699999999999999987763 333232 3


Q ss_pred             CCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           81 SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        81 ~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      .+.|.|+.|+|+  .-+|++++.|++|++||+++.+....+ +|.+.++.++++|||.++++|+.||.+.+||++..++ 
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-  226 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-  226 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence            789999999996  789999999999999999998887776 7999999999999999999999999999999998854 


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                         +...+|...|.+++|+|+.-+|+.+             .+..|+|||+.+.
T Consensus       227 ---lysl~a~~~v~sl~fspnrywL~~a-------------t~~sIkIwdl~~~  264 (315)
T KOG0279|consen  227 ---LYSLEAFDIVNSLCFSPNRYWLCAA-------------TATSIKIWDLESK  264 (315)
T ss_pred             ---eEeccCCCeEeeEEecCCceeEeec-------------cCCceEEEeccch
Confidence               3344789999999999976555443             3566888887643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.9e-25  Score=227.76  Aligned_cols=181  Identities=15%  Similarity=0.245  Sum_probs=157.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc-----CCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-----NSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp-----dg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      +|+|||+.||+|+.||.|++||.++|+++..-...|...|.+++|.|     ..+ +|++++.||.|+|||+..+.+ +.
T Consensus       164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-~~  241 (480)
T KOG0271|consen  164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-VR  241 (480)
T ss_pred             EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE-EE
Confidence            58999999999999999999999998876543334888999999976     345 799999999999999988774 77


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEe-----------cCC---------
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI-----------DDD---------  134 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafs-----------Pdg---------  134 (568)
                      ++.+|+.+|+|+.|-. ..+|++++.|++|++|+...|.+.+.+ +|...|+.++++           |.+         
T Consensus       242 ~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  242 TLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            8999999999999984 468999999999999999999988887 799999999877           223         


Q ss_pred             ----------------CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          135 ----------------WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       135 ----------------~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                                      ..|++|+.|.++.+|+....++++..+.  +|..-|+.+.|+||++|+++++
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaS  386 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASAS  386 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEee
Confidence                            3599999999999999988877777666  9999999999999999988664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=3.6e-24  Score=234.21  Aligned_cols=200  Identities=19%  Similarity=0.290  Sum_probs=172.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      .|+++|+.|++++.++.+++|++...+  ....+.+ |...|++++|+++++ ++++++.|++|+|||+......++.++
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~  243 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK  243 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec
Confidence            379999999999999999999997777  6666654 778899999999998 899999999999999955544688899


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-  156 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~-  156 (568)
                      +|...|++++|+|+++++++|+.|++|++||+++++++..+ .|.+.|++++|++++++|++++.|+.|+|||+.+... 
T Consensus       244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            99999999999999999999999999999999999999888 6999999999999999999999999999999999853 


Q ss_pred             ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          157 PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       157 ~v~~l~~~~h~~--~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      +...+.  .+..  ++++++|+|++++++++            ..|+.+++||++.......
T Consensus       324 ~~~~~~--~~~~~~~~~~~~fsp~~~~ll~~------------~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  324 CLKLLS--GAENSAPVTSVQFSPNGKYLLSA------------SLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             eeeccc--CCCCCCceeEEEECCCCcEEEEe------------cCCCeEEEEEccCCcceee
Confidence            233333  3333  59999999977665554            5699999999987665443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.92  E-value=2.3e-23  Score=206.88  Aligned_cols=198  Identities=19%  Similarity=0.253  Sum_probs=171.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      ||+|.|+++|.|+-|+...||++.+.      +..+++.+ |.+.+.|+.|..|+  .|+|++-|.++.+||+++++ ++
T Consensus       104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-HtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~-~~  179 (343)
T KOG0286|consen  104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ-QT  179 (343)
T ss_pred             EECCCCCeEEecCcCceeEEEecccccccccceeeeeecC-ccceeEEEEEcCCC--ceEecCCCceEEEEEcccce-EE
Confidence            68999999999999999999999754      23445665 88999999999865  49999999999999999987 58


Q ss_pred             EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        75 ~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      ..+.+|.+.|.++.+.| +++.+++|+.|+..++||+|.+.+++.| +|+..|++++|.|+|.-+++|+.|+++++||+|
T Consensus       180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            88999999999999999 9999999999999999999999999998 799999999999999999999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~  215 (568)
                      ... .+.++....-..+|++++|+..|++|..            +..|..+.+||.-+.....
T Consensus       260 aD~-~~a~ys~~~~~~gitSv~FS~SGRlLfa------------gy~d~~c~vWDtlk~e~vg  309 (343)
T KOG0286|consen  260 ADQ-ELAVYSHDSIICGITSVAFSKSGRLLFA------------GYDDFTCNVWDTLKGERVG  309 (343)
T ss_pred             CCc-EEeeeccCcccCCceeEEEcccccEEEe------------eecCCceeEeeccccceEE
Confidence            873 4555554445678999999997665544            4569999999987655433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.91  E-value=6.3e-23  Score=202.72  Aligned_cols=190  Identities=18%  Similarity=0.225  Sum_probs=163.3

Q ss_pred             CCEEEEEECCCcEEEEECC-----CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            6 DEHLASISLSGDLILHNLA-----SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~-----tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      -+.|++++.|.++.+|++.     .|..++.+++ |...|..+..+++++ ++++++.|+++++||+.+++ ..+.+.+|
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~-~t~~f~GH  104 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE-STRRFVGH  104 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCc-eEEeccccceEEEEEecCCc-EEEEEEec
Confidence            4678899999999999975     3567888998 788899999999997 89999999999999999986 47889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec--CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h--~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      ...|.+++|++|.+.|++|+.|++|++||+..........+  .+.|.|++|+|+  ..+|+.++.|+.|++||+++.+ 
T Consensus       105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-  183 (315)
T KOG0279|consen  105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-  183 (315)
T ss_pred             CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-
Confidence            99999999999999999999999999999987665544433  688999999997  7899999999999999999873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ....+  .+|.+.++.++++|||..++.            ++.|+.+.+||++....
T Consensus       184 l~~~~--~gh~~~v~t~~vSpDGslcas------------Ggkdg~~~LwdL~~~k~  226 (315)
T KOG0279|consen  184 LRTTF--IGHSGYVNTVTVSPDGSLCAS------------GGKDGEAMLWDLNEGKN  226 (315)
T ss_pred             hhhcc--ccccccEEEEEECCCCCEEec------------CCCCceEEEEEccCCce
Confidence            33333  389999999999997766555            46799999999987554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.90  E-value=6.8e-23  Score=207.77  Aligned_cols=205  Identities=18%  Similarity=0.281  Sum_probs=178.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.|-++.+++|+.|++|+|||+++|++...+.+ |...|+.+++++... +++++++|+.|+.||+..++ .++...+|-
T Consensus       159 vdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nk-vIR~YhGHl  235 (460)
T KOG0285|consen  159 VDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNK-VIRHYHGHL  235 (460)
T ss_pred             eCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCc-eEEEecCCCeeEEEechhhh-hHHHhcccc
Confidence            567889999999999999999999999999997 778899999999988 89999999999999999887 477789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|+|++.+|.-+.|++|+.|.++++||+|+...+..+ +|..+|..+.+.|-...+++|+.|++|++||++.++.. . 
T Consensus       236 S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~-  313 (460)
T KOG0285|consen  236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-I-  313 (460)
T ss_pred             ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-E-
Confidence            99999999999999999999999999999999988888 69999999999998888999999999999999998532 2 


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEecc----------------------------CCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETT----------------------------CKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~----------------------------ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                       ....|...|.+++.+|....+++++.                            .+.+.++++++..|.+.+||-+...
T Consensus       314 -tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  314 -TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             -eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence             23368899999999987655554321                            2234477888888999999987643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.90  E-value=7.2e-23  Score=203.99  Aligned_cols=198  Identities=17%  Similarity=0.239  Sum_probs=173.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      .|+|+|.+||+|+.|..|.+|++. ..+....+++ |.+.|..+.|.+++. .+++++.|.+|+.||+++++. ++..+.
T Consensus        54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~-~rk~k~  130 (338)
T KOG0265|consen   54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKR-IRKHKG  130 (338)
T ss_pred             EECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCC-EEEEecCCceEEEEeccccee-eehhcc
Confidence            489999999999999999999964 4445566775 888999999999998 799999999999999999884 778899


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        80 H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      |...|+.++-.. ...++.+++.|+++++||+|+...++++..+.+++++.|..++..+.+|+-|+.|++||++... ..
T Consensus       131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~  209 (338)
T KOG0265|consen  131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GL  209 (338)
T ss_pred             ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-ce
Confidence            999999998554 4457788999999999999999999999889999999999999999999999999999999874 34


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      .++.  +|.+.|+.+..+++|.+            +++.++|.++++||+|||++..+
T Consensus       210 ~~ls--Gh~DtIt~lsls~~gs~------------llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  210 YTLS--GHADTITGLSLSRYGSF------------LLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             EEee--cccCceeeEEeccCCCc------------cccccccceEEEEEecccCCCCc
Confidence            5555  99999999999997655            45557899999999999998665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=5e-24  Score=219.02  Aligned_cols=191  Identities=19%  Similarity=0.275  Sum_probs=170.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+++|.++++|+.+|.|++|+. +.+.+..+++||.+.|++++|+|+.. .|+++++||+|+|||....++ ...+.+|.
T Consensus       146 ws~~g~wmiSgD~gG~iKyWqp-nmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e~vL~GHg  222 (464)
T KOG0284|consen  146 WSHNGTWMISGDKGGMIKYWQP-NMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-ERVLRGHG  222 (464)
T ss_pred             EccCCCEEEEcCCCceEEeccc-chhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-hheeccCC
Confidence            7899999999999999999997 45667788888889999999999876 799999999999999976653 56679999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|.+++|+|...+|++++.|..|++||.+++.++..+ .|+..|..+.|++++++|++++.|..++|||+++.+ .+..
T Consensus       223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-El~~  301 (464)
T KOG0284|consen  223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-ELFT  301 (464)
T ss_pred             CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-HHHH
Confidence            99999999999999999999999999999999998877 799999999999999999999999999999999663 2344


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ++  +|...|+++.|+|-           .+.++.+++.|+.|..|.+.
T Consensus       302 ~r--~Hkkdv~~~~WhP~-----------~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  302 YR--GHKKDVTSLTWHPL-----------NESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             hh--cchhhheeeccccc-----------cccceeeccCCCceEEEecc
Confidence            44  89999999999995           45567777889999999886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.90  E-value=2.6e-22  Score=199.39  Aligned_cols=186  Identities=17%  Similarity=0.201  Sum_probs=164.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      |+.+|++++.|.+..+||+++++.+..|.+ |.+-|.++.+.|...+.|++|+-|+..+|||++.+.+ ++.+.+|...|
T Consensus       155 dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDI  232 (343)
T KOG0286|consen  155 DDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDI  232 (343)
T ss_pred             CCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcce-eEeeccccccc
Confidence            477899999999999999999999999998 6666778999994444899999999999999998874 88999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      +++.|.|+|.-|++|++|++.++||+|..+.+..+.++   .+|++++|+..|++|++|..|..+.+||.-..+ .+..+
T Consensus       233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-~vg~L  311 (343)
T KOG0286|consen  233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-RVGVL  311 (343)
T ss_pred             ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-eEEEe
Confidence            99999999999999999999999999999998888654   579999999999999999999999999987764 33444


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      .  +|...|.++..+|||-.++++++            |..++||.
T Consensus       312 ~--GHeNRvScl~~s~DG~av~TgSW------------Ds~lriW~  343 (343)
T KOG0286|consen  312 A--GHENRVSCLGVSPDGMAVATGSW------------DSTLRIWA  343 (343)
T ss_pred             e--ccCCeeEEEEECCCCcEEEecch------------hHheeecC
Confidence            4  99999999999998766666644            99999993

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.90  E-value=6.7e-23  Score=224.71  Aligned_cols=197  Identities=14%  Similarity=0.224  Sum_probs=172.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-------------------------------eeEEeeCCCCCcEEEEEEccCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA-------------------------------KAAELKDPNEQVLRVLDYSRNSR   50 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~-------------------------------~v~~l~~~h~~~Vs~Lafspdg~   50 (568)
                      |+.|+.+||.|-.|..|++|.+...+                               ....+. .|.++|..+.|+|+.+
T Consensus       386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg~sFsPd~r  464 (707)
T KOG0263|consen  386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYGCSFSPDRR  464 (707)
T ss_pred             ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCceeeeeeccccc
Confidence            78889999999999999999986311                               112344 4888999999999988


Q ss_pred             eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEE
Q 008356           51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA  129 (568)
Q Consensus        51 ~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLa  129 (568)
                       +|+++++|++||+|.+++..+ +...++|..+|.++.|+|.|.++++++.|++-++|......+++++ +|...+.|+.
T Consensus       465 -fLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~  542 (707)
T KOG0263|consen  465 -FLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS  542 (707)
T ss_pred             -ceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence             899999999999999999886 4456799999999999999999999999999999999999999888 7999999999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |+|+.+|+++|+.|.+|++||+.++. .++++.  +|.++|.+++|+|+|++|+++            +.|+.|++||+.
T Consensus       543 FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~--GH~~~V~al~~Sp~Gr~LaSg------------~ed~~I~iWDl~  607 (707)
T KOG0263|consen  543 FHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFT--GHKGPVTALAFSPCGRYLASG------------DEDGLIKIWDLA  607 (707)
T ss_pred             ECCcccccccCCCCceEEEEEcCCCc-EEEEec--CCCCceEEEEEcCCCceEeec------------ccCCcEEEEEcC
Confidence            99999999999999999999999984 567776  899999999999988887766            569999999998


Q ss_pred             CCCcccc
Q 008356          210 PSVTTSS  216 (568)
Q Consensus       210 ~~~~~~s  216 (568)
                      .......
T Consensus       608 ~~~~v~~  614 (707)
T KOG0263|consen  608 NGSLVKQ  614 (707)
T ss_pred             CCcchhh
Confidence            7554433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.90  E-value=2.1e-22  Score=210.10  Aligned_cols=199  Identities=16%  Similarity=0.263  Sum_probs=169.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------   72 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--------   72 (568)
                      +||.+|..||+|..||.++||+. +|.++..+.. |+++|..++|+..|. +|++++.|+++.+||..++..        
T Consensus       242 ~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s  318 (524)
T KOG0273|consen  242 DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHS  318 (524)
T ss_pred             EecCCCCeEEEeecCcEEEEEec-Cchhhhhhhc-cCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeecc
Confidence            58999999999999999999995 7777777775 888999999999998 899999999999999744321        


Q ss_pred             --------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-
Q 008356           73 --------------------------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-  119 (568)
Q Consensus        73 --------------------------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-  119 (568)
                                                      ++..+.+|.++|+++.|+|.+.+|++++.|++++||..........+ 
T Consensus       319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~  398 (524)
T KOG0273|consen  319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ  398 (524)
T ss_pred             CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence                                            13356779999999999999999999999999999999887777666 


Q ss_pred             ecCCCeEEEEEecC---------CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          120 TYEAPFSSLAFIDD---------DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       120 ~h~~~ItsLafsPd---------g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      .|...|..+.|+|.         +..+++++.|++|++||+..+. ++..+.  .|..+|++++|+|+|+|++++     
T Consensus       399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~--kH~~pVysvafS~~g~ylAsG-----  470 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLM--KHQEPVYSVAFSPNGRYLASG-----  470 (524)
T ss_pred             hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeec--cCCCceEEEEecCCCcEEEec-----
Confidence            69999999999995         4679999999999999999884 445554  799999999999988776666     


Q ss_pred             CeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          191 ETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                             +.|+.|.+|+.+.......+
T Consensus       471 -------s~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  471 -------SLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             -------CCCCeeEeccccchheeEee
Confidence                   56999999998876654443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.90  E-value=3.8e-22  Score=194.54  Aligned_cols=195  Identities=11%  Similarity=0.153  Sum_probs=166.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |..+|+.+++|++||+++|||++...+.+.++  +...|+++..+|+.. -|++|.++|.|++||+....+....+....
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCC
Confidence            78899999999999999999999877777776  568999999999876 689999999999999988866556666777


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~------v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ..|.++...|||.+++.+...|.+++|++-+.+.      +..+ .|.+.|..+.++|++++|++++.|.+|+||+.++.
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            8899999999999999999999999999976532      2233 58889999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      -+....+.  +|..++...+|+-+|.||+++            +.|..+++||+.....
T Consensus       248 ~kle~~l~--gh~rWvWdc~FS~dg~YlvTa------------ssd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  248 FKLELVLT--GHQRWVWDCAFSADGEYLVTA------------SSDHTARLWDLSAGKE  292 (311)
T ss_pred             eeeEEEee--cCCceEEeeeeccCccEEEec------------CCCCceeecccccCce
Confidence            33334444  899999999999977766665            5599999999877554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.89  E-value=2.2e-23  Score=214.29  Aligned_cols=194  Identities=16%  Similarity=0.249  Sum_probs=165.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |.|+|+.|++|+..|.+.+|+...-.....++ .|+..|+++.|++++. .+++|+.+|.|++|+..-+.  ++.+..|.
T Consensus       104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn--Vk~~~ahh  179 (464)
T KOG0284|consen  104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN--VKIIQAHH  179 (464)
T ss_pred             EcCCCceeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCC-EEEEcCCCceEEecccchhh--hHHhhHhh
Confidence            88999999999999999999974433333344 4899999999999998 89999999999999986654  45556655


Q ss_pred             -CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           82 -APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        82 -~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                       ..|++++|+|++..+++|++||+|+|||....+....+ +|...|.+++|+|....|++|+.|..|++||.+++.+ +.
T Consensus       180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c-l~  258 (464)
T KOG0284|consen  180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC-LA  258 (464)
T ss_pred             hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch-hh
Confidence             89999999999999999999999999999988777666 7999999999999999999999999999999999853 33


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      .+.  +|...|..+.|++++++|++            ++.|..++++|+|.....
T Consensus       259 tlh--~HKntVl~~~f~~n~N~Llt------------~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  259 TLH--GHKNTVLAVKFNPNGNWLLT------------GSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             hhh--hccceEEEEEEcCCCCeeEE------------ccCCceEEEEehhHhHHH
Confidence            333  89999999999997665544            467999999999955543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=8.4e-24  Score=220.19  Aligned_cols=249  Identities=17%  Similarity=0.187  Sum_probs=215.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+.+|++|+.|+..|+|..+|+.++++.+++.  ..+.|+++.|.++.+  +++..+...++|||-.+.+  +++++.|.
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~GtE--lHClk~~~  210 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGTE--LHCLKRHI  210 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCcE--EeehhhcC
Confidence            67899999999999999999999999999987  567899999999876  4555678999999988876  78888886


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      . |..+.|.|...+|++++..|.+++.|+.+|+.+..+ ...+.+..++-+|.+.++.+|..+|+|.+|........+++
T Consensus       211 ~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  211 R-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             c-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            5 999999999999999999999999999999999888 56788999999999999999999999999999998767777


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccccccccc---CCCCCcccCCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVS---GSRPNSRSGPSAE  237 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~---~~~sslt~sssG~  237 (568)
                      ++   |.++|.+|+++++|+|+++.            +.|+.|+|||+|.+....++.+..+..   -++..+.+.+.|.
T Consensus       290 Lc---H~g~V~siAv~~~G~YMaTt------------G~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~  354 (545)
T KOG1272|consen  290 LC---HRGPVSSIAVDRGGRYMATT------------GLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD  354 (545)
T ss_pred             Hh---cCCCcceEEECCCCcEEeec------------ccccceeEeeeccccccceeecCCCccccccccccceeeecCC
Confidence            75   99999999999987776665            569999999999999877766633322   2567778888888


Q ss_pred             CccCccCC----CCCCCCcccccCCCCCceeeecCCCCCCcCCccccccccccc
Q 008356          238 ASSLTVGG----TGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDV  287 (568)
Q Consensus       238 ~ss~~~~s----~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv  287 (568)
                      -+.++...    ...++||++|...+ ++..|+              |||+|||
T Consensus       355 ~v~iw~d~~~~s~~~~~pYm~H~~~~-~V~~l~--------------FcP~EDv  393 (545)
T KOG1272|consen  355 HVQIWKDALKGSGHGETPYMNHRCGG-PVEDLR--------------FCPYEDV  393 (545)
T ss_pred             eeeeehhhhcCCCCCCcchhhhccCc-ccccce--------------eccHHHe
Confidence            77777653    35789999999886 999998              9999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.1e-20  Score=183.91  Aligned_cols=193  Identities=20%  Similarity=0.312  Sum_probs=163.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|++|++.+++....+.. |...+..+.|.++++ +|++++.||.|++||+...+ ....+..|
T Consensus        16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~-~~~~~~~~   92 (289)
T cd00200          16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGE-CVRTLTGH   92 (289)
T ss_pred             EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCccc-ceEEEecc
Confidence            4789999999999999999999998887777775 666777899999986 79999999999999998765 35667789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|.++.|+++++++++++.|+.|++||+++++....+ .|...|.+++|+|++.++++++.|+.|++||++... +..
T Consensus        93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~  171 (289)
T cd00200          93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVA  171 (289)
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cce
Confidence            889999999999888888888999999999988877777 478899999999999999988889999999998663 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .+.  .|...|.+++|+++++.++++            +.|+.|++||++..
T Consensus       172 ~~~--~~~~~i~~~~~~~~~~~l~~~------------~~~~~i~i~d~~~~  209 (289)
T cd00200         172 TLT--GHTGEVNSVAFSPDGEKLLSS------------SSDGTIKLWDLSTG  209 (289)
T ss_pred             eEe--cCccccceEEECCCcCEEEEe------------cCCCcEEEEECCCC
Confidence            444  677899999999976554443            44899999998763

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.3e-21  Score=214.07  Aligned_cols=202  Identities=21%  Similarity=0.328  Sum_probs=166.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEEC-CCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl-~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+|+++++++++.|++|+|||+ ..+..++.+++ |...|++++|+|++ +++++|+.|++|+|||+++++ ....+.+
T Consensus       210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~-~~~~l~~  286 (456)
T KOG0266|consen  210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE-CVRKLKG  286 (456)
T ss_pred             EECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe-EEEeeec
Confidence            58999999999999999999999 55688899996 77788999999999 499999999999999999976 4788999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEe-ecCC--CeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI-TYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~-~h~~--~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      |...|++++|++++++|++++.|+.|++||+.++.  ++..+ .+..  .+++++|+|++.+|+++..|+.|++||++..
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999999999999999999999999999998  44444 3333  5899999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      .. ...+.  +|...+.++ |++.        ...++.++++++.|+.|++||+........+
T Consensus       367 ~~-~~~~~--~~~~~~~~~-~~~~--------~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l  417 (456)
T KOG0266|consen  367 KS-VGTYT--GHSNLVRCI-FSPT--------LSTGGKLIYSGSEDGSVYVWDSSSGGILQRL  417 (456)
T ss_pred             cc-eeeec--ccCCcceeE-eccc--------ccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence            43 34444  555543222 2221        1335667788888999999999875544433

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=1.5e-20  Score=206.84  Aligned_cols=199  Identities=15%  Similarity=0.268  Sum_probs=157.6

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +|+| ++++|++|+.||+|+|||+.++.       .+..+.+ |...|.+++|+|++.++|++++.|++|+|||+..+. 
T Consensus        82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-  159 (493)
T PTZ00421         82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-  159 (493)
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-
Confidence            4888 78999999999999999997652       3556665 778899999999876689999999999999998876 


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCC-eEEEEEecCCCEEEEEE----cCCeE
Q 008356           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGT----SNGRV  146 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~-ItsLafsPdg~~LasGs----~DG~V  146 (568)
                      ....+..|...|++++|+|++.+|++++.|++|++||+++++.+..+ .|.+. +..+.|.+++..+++++    .|+.|
T Consensus       160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V  239 (493)
T PTZ00421        160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI  239 (493)
T ss_pred             EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence            36678889999999999999999999999999999999999887766 45543 45778998877777654    47899


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ++||++....++.... ..+...+....|++++.+++           +++..|+.|++||++....
T Consensus       240 klWDlr~~~~p~~~~~-~d~~~~~~~~~~d~d~~~L~-----------lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        240 MLWDTRKMASPYSTVD-LDQSSALFIPFFDEDTNLLY-----------IGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             EEEeCCCCCCceeEec-cCCCCceEEEEEcCCCCEEE-----------EEEeCCCeEEEEEeeCCce
Confidence            9999998765555443 12334555667777654433           2333599999999987553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.89  E-value=9.3e-22  Score=191.87  Aligned_cols=174  Identities=14%  Similarity=0.245  Sum_probs=148.9

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeE
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTA   85 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l~~H~~~Vt   85 (568)
                      -+|++++.|-+|++|...+|.+...++ |.+..|+.+.+.|+++ .|++++. ..|++||+++..+ ++..+.+|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            478999999999999999999999998 4678899999999987 5666554 6799999987765 6889999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 008356           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS  165 (568)
Q Consensus        86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~  165 (568)
                      .+.|..+|+++++|++||+++|||+|...+.+.+.+..+|+++..+|+...|++|..+|.|++||++........+.  .
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--e  165 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--E  165 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC--C
Confidence            99999999999999999999999999988888899999999999999999999999999999999997633222222  3


Q ss_pred             CCCCeeEEEEccCCCeEEEe
Q 008356          166 SSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       166 h~~~VtsLafspdg~~Las~  185 (568)
                      ....|.++...|+|.+++..
T Consensus       166 ~~~~i~sl~v~~dgsml~a~  185 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAA  185 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEe
Confidence            34567777777777666543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.1e-22  Score=217.29  Aligned_cols=199  Identities=18%  Similarity=0.238  Sum_probs=158.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC--------------------------------C-----------------------
Q 008356            2 YNCKDEHLASISLSGDLILHNLAS--------------------------------G-----------------------   26 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~t--------------------------------g-----------------------   26 (568)
                      |++||+|||+||.||.|+||.+..                                .                       
T Consensus       275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~  354 (712)
T KOG0283|consen  275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA  354 (712)
T ss_pred             eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence            899999999999999999998754                                0                       


Q ss_pred             -----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEe
Q 008356           27 -----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG  100 (568)
Q Consensus        27 -----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs  100 (568)
                           ++++++++ |.+.|-+|.|+.++  +|++++.|.+|+||++....+  ..+..|...|+||+|+| |.++|++|+
T Consensus       355 f~f~ekP~~ef~G-Ht~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTcVaFnPvDDryFiSGS  429 (712)
T KOG0283|consen  355 FVFSEKPFCEFKG-HTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTCVAFNPVDDRYFISGS  429 (712)
T ss_pred             ccccccchhhhhc-cchhheecccccCC--eeEeccccccEEeecCCCcce--eeEEecCCeeEEEEecccCCCcEeecc
Confidence                 01223444 66667889999875  799999999999999987774  45677999999999999 999999999


Q ss_pred             CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC------CCCeeEEE
Q 008356          101 LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS------SEAVSSLC  174 (568)
Q Consensus       101 ~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h------~~~VtsLa  174 (568)
                      .|++|+||++...+.+.......-|++++|.|||++.++|+.+|.+++|+.+..+ .........|      ...|+.+.
T Consensus       430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~rITG~Q  508 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGKRITGLQ  508 (712)
T ss_pred             cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCceeeeeE
Confidence            9999999999998888777778999999999999999999999999999998753 2222211111      22799999


Q ss_pred             EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      |.|..          .. .++..+.|..|+|+|.+.-.....+
T Consensus       509 ~~p~~----------~~-~vLVTSnDSrIRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  509 FFPGD----------PD-EVLVTSNDSRIRIYDGRDKDLVHKF  540 (712)
T ss_pred             ecCCC----------CC-eEEEecCCCceEEEeccchhhhhhh
Confidence            99831          22 3444455999999999655444433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2e-22  Score=211.23  Aligned_cols=205  Identities=19%  Similarity=0.248  Sum_probs=177.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |-.||++|++|+..|.|+|||+.+...++.+++ |..+++.+.|+|++..+|++|++|+.+++||+.+... ...+.+|+
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ht  153 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHT  153 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCc
Confidence            667999999999999999999766556677776 7788999999999998999999999999999998874 66889999


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        82 ~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~-~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      +.|.|.+|+| ++..+++|+.||+|++||++.. ..+..+.|+.+|..+.+-|.|..+++++. ..|+|||+-++.+.+.
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence            9999999999 7778999999999999999987 77888899999999999999999998875 5799999997655433


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV  223 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~  223 (568)
                      ...  .|...|+|+++..+            +..|++++.|+.|++||+..+....++..+.+.
T Consensus       233 ~~~--~H~KtVTcL~l~s~------------~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv  282 (487)
T KOG0310|consen  233 SMF--NHNKTVTCLRLASD------------STRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV  282 (487)
T ss_pred             hhh--cccceEEEEEeecC------------CceEeecccccceEEEEccceEEEEeeecccce
Confidence            332  59999999999874            467888899999999999988887777766554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.5e-22  Score=195.31  Aligned_cols=195  Identities=21%  Similarity=0.274  Sum_probs=166.7

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKD-EHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG-~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+++. +.+++++.||.++|||+.. ..++..++. |+..|.++.|++..+..+++++.|++|++|+..-... +.++.
T Consensus        67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~  144 (311)
T KOG0277|consen   67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFN  144 (311)
T ss_pred             eecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeec
Confidence            466654 5788889999999999643 346777876 6777888999998887899999999999999976653 78899


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 008356           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt-~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      +|...|+..+|+| ..+.+++++.|+.+++||++. ++.+.+..|...|.|+.|+. +.++|++|+.|+.|++||+++.+
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence            9999999999999 889999999999999999987 45555447888999999998 67889999999999999999998


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .|+.++.  +|.-.|+.++|+|.           ...+|++++.|-++++||...
T Consensus       225 ~pl~eL~--gh~~AVRkvk~Sph-----------~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  225 TPLFELN--GHGLAVRKVKFSPH-----------HASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             ccceeec--CCceEEEEEecCcc-----------hhhHhhhccccceEEeccccc
Confidence            8888876  89999999999996           345677788899999999753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.8e-22  Score=211.12  Aligned_cols=196  Identities=16%  Similarity=0.262  Sum_probs=175.3

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      -.+.+++|++|..|+||+..+++.+..|.+ |.+.|++++.+|... +++++++|-+|++||.+..-...+.+.+|...|
T Consensus        66 RknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV  143 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV  143 (794)
T ss_pred             ccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEE
Confidence            356889999999999999999999999997 888999999999998 899999999999999988776788999999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        85 tslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ++++|+| |.+.+++++.|++|++|.+....+..++ +|...|+|+.|-+-  ..+|++|+.|..|+|||.++. .+++.
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~T  222 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQT  222 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHH
Confidence            9999999 8899999999999999999998888777 79999999999884  469999999999999999987 46677


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      +.  +|...|..++|+|.-            .++++++.||+|++|+-..+.....+
T Consensus       223 Le--GHt~Nvs~v~fhp~l------------piiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  223 LE--GHTNNVSFVFFHPEL------------PIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             hh--cccccceEEEecCCC------------cEEEEecCCccEEEecCcceehhhhh
Confidence            77  899999999999954            45666688999999998877654443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=2.9e-21  Score=210.39  Aligned_cols=198  Identities=15%  Similarity=0.256  Sum_probs=170.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|||++||+|+.||+|+|||...+-+..+|.. |...|+.+.|...++ .+++.+-||+|+.||+.....-.......
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCC
Confidence            4899999999999999999999999999999997 778899999999997 89999999999999997665422222334


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DG-tV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      .....|++..|.|.+++.|+.|. .|++|++++|+.+..+ +|+++|.+++|+|++..|++++.|.+|++||+-.....+
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence            45678899999999999999888 6999999999999888 899999999999999999999999999999998765555


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~  215 (568)
                      ..+.   +...+..++|.|+|+-++..            ..||.|.+||+.......
T Consensus       515 Etl~---i~sdvl~vsfrPdG~elaVa------------TldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  515 ETLE---IRSDVLAVSFRPDGKELAVA------------TLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             eeEe---eccceeEEEEcCCCCeEEEE------------EecceEEEEEhhhceeec
Confidence            6664   66789999999988776655            459999999987655443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=2.7e-21  Score=210.58  Aligned_cols=193  Identities=18%  Similarity=0.316  Sum_probs=169.3

Q ss_pred             CccCCCCEEEEEECC-CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~D-G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +||..|+.||.|+.. |.+.||++.....+...++ |...+.+++++|||+ ++++|++||.|+|||...+-+ ..++..
T Consensus       314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC-~vTFte  390 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC-FVTFTE  390 (893)
T ss_pred             EecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE-EEEecc
Confidence            478889999998765 8999999988888877776 777889999999998 999999999999999998876 667899


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC--CeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA--PFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQ  156 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~--~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~  156 (568)
                      |+..|+.+.|+..++.+++.+.||+|+.||+...+..+++....  ...|++..|.|.++++|+.|.. |+||+++++ +
T Consensus       391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-q  469 (893)
T KOG0291|consen  391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-Q  469 (893)
T ss_pred             CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-e
Confidence            99999999999999999999999999999999999988885444  4678899999999999998875 999999998 5


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .+.++.  +|.++|.+++|+|.+..|+++            +-|.+|++||+-..
T Consensus       470 llDiLs--GHEgPVs~l~f~~~~~~LaS~------------SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  470 LLDILS--GHEGPVSGLSFSPDGSLLASG------------SWDKTVRIWDIFSS  510 (893)
T ss_pred             eeehhc--CCCCcceeeEEccccCeEEec------------cccceEEEEEeecc
Confidence            666776  999999999999976655555            55999999998543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3e-21  Score=187.04  Aligned_cols=202  Identities=17%  Similarity=0.273  Sum_probs=171.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      ||-||+|.++++.|.+|++|+...+.+++++.+ |...|.+++.+.++. .|++|+.|..|.+||+.+++ ..+.+.+|.
T Consensus        25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~  101 (307)
T KOG0316|consen   25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGK-VDRRFRGHL  101 (307)
T ss_pred             EccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeecccccccc-ccccCCCCceEEEEEcccCe-eeeeccccc
Confidence            788999999999999999999999999999998 777788889888887 69999999999999999998 488899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~--~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      +.|+.+.|+.+...+++|+.|.+|++||.|..  ++++++ .....|.++...  +..+++|+.||+++.||+|.+..  
T Consensus       102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l--  177 (307)
T KOG0316|consen  102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL--  177 (307)
T ss_pred             ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee--
Confidence            99999999999999999999999999999874  567777 466788888887  56899999999999999998742  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEec--------------------------------cCCCCeEEEEecCCCcEEcC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDET--------------------------------TCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s--------------------------------~ssd~~~Lls~s~Dg~V~VW  206 (568)
                       ...  .-..+|++++|+++++..+.+.                                -.....++++++.||.|.+|
T Consensus       178 -~sD--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  178 -SSD--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             -ehh--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence             122  2346899999999998865332                                12244578999999999999


Q ss_pred             CCCCCCc
Q 008356          207 DPLPSVT  213 (568)
Q Consensus       207 Dlr~~~~  213 (568)
                      |+-....
T Consensus       255 dLvd~~~  261 (307)
T KOG0316|consen  255 DLVDETQ  261 (307)
T ss_pred             Eecccee
Confidence            9876443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.87  E-value=2.1e-20  Score=181.84  Aligned_cols=188  Identities=21%  Similarity=0.388  Sum_probs=160.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+++++++++++.+|.|++||+.+++....+.. |...+.+++|++++. ++++++.|+.|++||+...+. ...+..|.
T Consensus       101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~  177 (289)
T cd00200         101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC-VATLTGHT  177 (289)
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc-ceeEecCc
Confidence            677888888888899999999998888888875 677899999999976 788888899999999987663 55677888


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|.++.|+|+++.+++++.|+.|++||++.++.+..+ .+...+.+++|++++.++++++.||.|++||++... +...
T Consensus       178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~  256 (289)
T cd00200         178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQT  256 (289)
T ss_pred             cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-eEEE
Confidence            89999999999999999999999999999998888887 788899999999998898888889999999998753 3444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      +.  .|...|.+++|+++++++            ++++.|+.|++||
T Consensus       257 ~~--~~~~~i~~~~~~~~~~~l------------~~~~~d~~i~iw~  289 (289)
T cd00200         257 LS--GHTNSVTSLAWSPDGKRL------------ASGSADGTIRIWD  289 (289)
T ss_pred             cc--ccCCcEEEEEECCCCCEE------------EEecCCCeEEecC
Confidence            44  688899999999975554            4446699999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4e-21  Score=195.53  Aligned_cols=190  Identities=14%  Similarity=0.263  Sum_probs=168.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |-|.|++|++++.|.+|+.|++.++-++.++.+ |.+.|+.++.+.||. ++++++.|.+|++|-+.++++ ...++.|.
T Consensus       201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hE  277 (406)
T KOG0295|consen  201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC-KAELREHE  277 (406)
T ss_pred             EEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCee-EEEecCCCceEEEEEeccchh-hhhhhccc
Confidence            567899999999999999999999999999997 777999999999998 999999999999999998865 45688999


Q ss_pred             CCeEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           82 APTAGISFSSD---------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        82 ~~VtslafsPd---------------g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      .+|.|++|.|.               +.++.+++.|++|++||+.++.++.++ +|...|+.++|+|.|+||+++..|++
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt  357 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT  357 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence            99999999753               258999999999999999999998887 79999999999999999999999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |++||+++.. +.+.+.  .|..-|++++|+.+-.            ++++|+.|..+++|.-|
T Consensus       358 lrvwdl~~~~-cmk~~~--ah~hfvt~lDfh~~~p------------~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  358 LRVWDLKNLQ-CMKTLE--AHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVWECR  406 (406)
T ss_pred             EEEEEeccce-eeeccC--CCcceeEEEecCCCCc------------eEEeccccceeeeeecC
Confidence            9999999884 445555  7888999999998644            56666789999999754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.87  E-value=6.9e-21  Score=198.81  Aligned_cols=189  Identities=23%  Similarity=0.370  Sum_probs=160.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCcee-----------------------------------------EEeeCCCCCcE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKA-----------------------------------------AELKDPNEQVL   40 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v-----------------------------------------~~l~~~h~~~V   40 (568)
                      |+.+|+||++++.||++.+||..++...                                         ..+.+ |.+.|
T Consensus       284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V  362 (524)
T KOG0273|consen  284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEV  362 (524)
T ss_pred             EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCce
Confidence            7888999999999999999998665422                                         23344 77789


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC---------CEEEEEeCCCeEEEEECC
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD---------KIIASVGLDKKLYTYDPG  111 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg---------~~LaSgs~DGtV~IWDlr  111 (568)
                      .+|+|+|.+. +|+++++|++++||....... ...+.+|...|+.+.|+|.+         ..|++++.|++|++||+.
T Consensus       363 ~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  363 NALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             EEEEECCCCc-eEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence            9999999998 999999999999999865543 77899999999999998854         479999999999999999


Q ss_pred             CCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          112 SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       112 t~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      .+.++..+ .|..+|.+++|+|+|+++|+|+.||.|++|+++..    +.++.+...+.|..++|+.+|.+|..+     
T Consensus       441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~~~~Ifel~Wn~~G~kl~~~-----  511 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQGTGGIFELCWNAAGDKLGAC-----  511 (524)
T ss_pred             CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecCCCeEEEEEEcCCCCEEEEE-----
Confidence            99999998 89999999999999999999999999999999988    334444567789999999976655444     


Q ss_pred             CeEEEEecCCCcEEcCCCC
Q 008356          191 ETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr  209 (568)
                             ..|+.+++-|+|
T Consensus       512 -------~sd~~vcvldlr  523 (524)
T KOG0273|consen  512 -------ASDGSVCVLDLR  523 (524)
T ss_pred             -------ecCCCceEEEec
Confidence                   348889988876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.1e-20  Score=184.29  Aligned_cols=194  Identities=14%  Similarity=0.199  Sum_probs=163.3

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCC---CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 008356            1 MYNCK-DEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (568)
Q Consensus         1 afSpd-G~~LasGs~DG~V~VWDl~t---g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~   75 (568)
                      +|||- |..||+++.|..|+||+...   -.+...+...|+..|+.++|+|.|+ +|++|+.|.++.||.-...+ ..+.
T Consensus        21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~   99 (312)
T KOG0645|consen   21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVA   99 (312)
T ss_pred             EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEe
Confidence            57887 88999999999999999874   3455667777899999999999998 99999999999999875443 3377


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR---PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~---~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      .+.+|...|.|++|+++|++|++|+.|+.|-||.+..+.   +..++ .|...|..+.|+|...+|++++.|++|++|+-
T Consensus       100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence            899999999999999999999999999999999998654   34444 69999999999999999999999999999987


Q ss_pred             CCCC--CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          152 RGKP--QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       152 rt~~--~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ....  .+...+.  +|...|.+++|++.|..            |++++.|++|+||..+
T Consensus       180 ~~dddW~c~~tl~--g~~~TVW~~~F~~~G~r------------l~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  180 EDDDDWECVQTLD--GHENTVWSLAFDNIGSR------------LVSCSDDGTVSIWRLY  225 (312)
T ss_pred             cCCCCeeEEEEec--CccceEEEEEecCCCce------------EEEecCCcceEeeeec
Confidence            6322  2334444  88899999999996544            4555779999999865

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=1.9e-20  Score=217.83  Aligned_cols=192  Identities=18%  Similarity=0.287  Sum_probs=159.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----c----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG----A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg----~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +|+|+|++||+|+.|+.|+|||+...    .    .+..+.  +...+.+++|++....+|++++.||+|++||+.+.. 
T Consensus       490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-  566 (793)
T PLN00181        490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-  566 (793)
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-
Confidence            48999999999999999999997531    1    122233  345688899998755589999999999999998776 


Q ss_pred             eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEE
Q 008356           73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWD  150 (568)
                      .+..+.+|...|++++|+| ++.+|++|+.|++|++||++++..+..+.+...+.++.|.+ ++.+|++|+.||.|++||
T Consensus       567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD  646 (793)
T PLN00181        567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD  646 (793)
T ss_pred             EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            4677889999999999997 88999999999999999999998888887777899999964 799999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ++....+...+.  +|...|.++.|. ++.            .+++++.|+.|++||++.
T Consensus       647 ~~~~~~~~~~~~--~h~~~V~~v~f~-~~~------------~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        647 LRNPKLPLCTMI--GHSKTVSYVRFV-DSS------------TLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCCCCccceEec--CCCCCEEEEEEe-CCC------------EEEEEECCCEEEEEeCCC
Confidence            997654444554  799999999996 332            456667799999999875

>PTZ00420 coronin; Provisional

Probab=99.87  E-value=5.3e-20  Score=204.54  Aligned_cols=196  Identities=12%  Similarity=0.186  Sum_probs=150.1

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCCc--------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356            1 MYNCK-DEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         1 afSpd-G~~LasGs~DG~V~VWDl~tg~--------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      +|+|+ +++|++|+.||.|+|||+.++.        .+..+.+ |...|.+++|+|++..+|++++.|++|+|||+.+..
T Consensus        81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~  159 (568)
T PTZ00420         81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK  159 (568)
T ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc
Confidence            48886 7899999999999999997542        2334554 778899999999998778899999999999998876


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEE-----EEEecCCCEEEEEEcCC-
Q 008356           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS-----LAFIDDDWILTAGTSNG-  144 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~Its-----LafsPdg~~LasGs~DG-  144 (568)
                      . ...+. |...|.+++|++++.+|++++.|+.|++||+++++.+..+ .|.+.+.+     ..|++++.+|++++.|+ 
T Consensus       160 ~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~  237 (568)
T PTZ00420        160 R-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN  237 (568)
T ss_pred             E-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence            3 33333 6678999999999999999999999999999999888776 56665433     23457888999888764 


Q ss_pred             ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       145 ---~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                         .|+|||++....++..+....+.+.+.. .|.++           .+.++++|..|+.|++|++...
T Consensus       238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~-----------tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        238 NMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDES-----------TGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CccEEEEEECCCCCCceEEEEecCCccceEE-eeeCC-----------CCCEEEEEECCCeEEEEEccCC
Confidence               7999999976566665543233333322 23332           4566777788999999998653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3e-21  Score=196.35  Aligned_cols=199  Identities=15%  Similarity=0.180  Sum_probs=173.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+..|++|++++.|=.+++||.++ .++++.+.+ |+..|.+++|-|.|. ++++++.|.+|++|+++++.+ +..+.+
T Consensus       157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~c-v~t~~~  233 (406)
T KOG0295|consen  157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYC-VKTFPG  233 (406)
T ss_pred             EEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cccceeeEEEEecCC-eeeecccccceeEEeccccee-EEeccC
Confidence            3677899999999998899999876 455666665 778899999999997 799999999999999999986 788999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecC---------------CCEEEEEEcC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD---------------DWILTAGTSN  143 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPd---------------g~~LasGs~D  143 (568)
                      |...|..++.+.||.++++++.|.+|++|-+.++++...+ .|+.+|.|++|.|.               +.++.+++.|
T Consensus       234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            9999999999999999999999999999999999888777 69999999999873               3699999999


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++|++||+.++.+ +..+.  +|..+|..++|+|.|+||+++            ..|+++++||++...+....
T Consensus       314 ktIk~wdv~tg~c-L~tL~--ghdnwVr~~af~p~Gkyi~Sc------------aDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  314 KTIKIWDVSTGMC-LFTLV--GHDNWVRGVAFSPGGKYILSC------------ADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             ceEEEEeccCCeE-EEEEe--cccceeeeeEEcCCCeEEEEE------------ecCCcEEEEEeccceeeecc
Confidence            9999999999853 33333  899999999999977776665            56999999999987765544

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=7.9e-20  Score=203.13  Aligned_cols=185  Identities=15%  Similarity=0.177  Sum_probs=146.3

Q ss_pred             EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCe
Q 008356           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPT   84 (568)
Q Consensus        12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------~v~~l~~H~~~V   84 (568)
                      |+.++.|++|+......+..+.+ |...|.+++|+|+..++|++|+.||+|+|||+.....       .+..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            45678899999877777777876 7788999999998545899999999999999975321       234678899999


Q ss_pred             EEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~-LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      .+++|+|++.. |++++.|++|++||+++++.+..+.+...|.+++|+++|.+|++++.|+.|+|||+++.. .+..+. 
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~-  206 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFH-  206 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEe-
Confidence            99999998765 578999999999999999887777777889999999999999999999999999999874 344444 


Q ss_pred             cCCCCCeeEEE-----EccCCCeEEEeccCCCCeEEEEecCC----CcEEcCCCCCCC
Q 008356          164 CSSSEAVSSLC-----WQRAKPVFIDETTCKAETALLGGAVG----DSILMPDPLPSV  212 (568)
Q Consensus       164 ~~h~~~VtsLa-----fspdg~~Las~s~ssd~~~Lls~s~D----g~V~VWDlr~~~  212 (568)
                       +|.+.+....     |++++.+|            ++++.|    +.|+|||++...
T Consensus       207 -gH~g~~~s~~v~~~~fs~d~~~I------------lTtG~d~~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        207 -IHDGGKNTKNIWIDGLGGDDNYI------------LSTGFSKNNMREMKLWDLKNTT  251 (568)
T ss_pred             -cccCCceeEEEEeeeEcCCCCEE------------EEEEcCCCCccEEEEEECCCCC
Confidence             6777654433     33444444            333333    589999998643

>PTZ00421 coronin; Provisional

Probab=99.85  E-value=1.4e-19  Score=199.23  Aligned_cols=197  Identities=16%  Similarity=0.204  Sum_probs=149.8

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCcee-------------EEeeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKA-------------AELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTT   68 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v-------------~~l~~~h~~~Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~   68 (568)
                      ++++..+++++.+.....|+...+..+             ..+.+ |.+.|.+++|+| ++. +|++|+.|++|++||+.
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIP  106 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecC
Confidence            345555566655555556654332211             13444 778899999999 555 89999999999999996


Q ss_pred             CCC------ceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEE
Q 008356           69 GRS------PKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        69 t~~------~~v~~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasG  140 (568)
                      ...      ..+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+ .|...|.+++|+|++.+|+++
T Consensus       107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg  186 (493)
T PTZ00421        107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT  186 (493)
T ss_pred             CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence            542      2356788999999999999964 79999999999999999999887777 588899999999999999999


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       141 s~DG~V~VWDlrt~~~~v~~l~~~~h~~~-VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.|+.|+|||+++.. .+..+.  +|.+. +..+.|.+++..+++.+.        +.+.|+.|++||++...
T Consensus       187 s~Dg~IrIwD~rsg~-~v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~--------s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        187 SKDKKLNIIDPRDGT-IVSSVE--AHASAKSQRCLWAKRKDLIITLGC--------SKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             cCCCEEEEEECCCCc-EEEEEe--cCCCCcceEEEEcCCCCeEEEEec--------CCCCCCeEEEEeCCCCC
Confidence            999999999999874 344444  56554 456778887655554421        12348999999998754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.85  E-value=7.9e-21  Score=198.99  Aligned_cols=190  Identities=17%  Similarity=0.294  Sum_probs=161.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+.+|..+++++.|+.|++||+++|+++..+.  ....+.|+.|.|++.++|++|+.|+.|+.||++.++ .++....|
T Consensus       265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~h  341 (503)
T KOG0282|consen  265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRH  341 (503)
T ss_pred             hccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhh
Confidence            589999999999999999999999999998887  567889999999998899999999999999999998 47778889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--------------------------------e--------
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--------------------------------T--------  120 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--------------------------------~--------  120 (568)
                      -+.|..+.|-++++++++.++|+.|+||+.+.+-++..+                                .        
T Consensus       342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence            999999999999999999999999999998654332211                                0        


Q ss_pred             ---------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 008356          121 ---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE  191 (568)
Q Consensus       121 ---------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~  191 (568)
                               ..+.-..+.|+|||.+|++|..||.|.+||.++.+ .+..+.  .|.+.+..+.|+|.           ..
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k-l~~~lk--ah~~~ci~v~wHP~-----------e~  487 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK-LVSKLK--AHDQPCIGVDWHPV-----------EP  487 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh-hhhccc--cCCcceEEEEecCC-----------Cc
Confidence                     01234468899999999999999999999999873 445555  78899999999996           33


Q ss_pred             eEEEEecCCCcEEcCC
Q 008356          192 TALLGGAVGDSILMPD  207 (568)
Q Consensus       192 ~~Lls~s~Dg~V~VWD  207 (568)
                      ..+++++-||.|++||
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            4566667799999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.85  E-value=1.8e-19  Score=190.35  Aligned_cols=182  Identities=20%  Similarity=0.338  Sum_probs=148.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~--~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~------   73 (568)
                      |+|||+++++++.||+|.|||-.+|+.+.++..  .|++.|.++.|+||+. .|++++.|.+++|||+.+.+..      
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecC
Confidence            899999999999999999999999999999872  4788999999999998 6999999999999998654311      


Q ss_pred             ------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 008356           74 ------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS  117 (568)
Q Consensus        74 ------------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~  117 (568)
                                                          ...+.+|...|+++..++++++|++|+.||.|.-||+.++..-+
T Consensus       277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence                                                12467899999999999999999999999999999985432110


Q ss_pred             E-------------------------------e------------------------------------------e----
Q 008356          118 C-------------------------------I------------------------------------------T----  120 (568)
Q Consensus       118 ~-------------------------------~------------------------------------------~----  120 (568)
                      .                               +                                          .    
T Consensus       357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~  436 (603)
T KOG0318|consen  357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK  436 (603)
T ss_pred             cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence            0                               0                                          0    


Q ss_pred             -----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          121 -----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       121 -----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                           ......+++++|++..+++|++|+.|+||.+..... ........|.++|++++|+|++.||+++
T Consensus       437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~  505 (603)
T KOG0318|consen  437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAG  505 (603)
T ss_pred             ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEe
Confidence                 001133678899999999999999999999988542 2222334799999999999999988855

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.4e-20  Score=205.68  Aligned_cols=198  Identities=16%  Similarity=0.199  Sum_probs=171.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|||.+.++++||+|-+|+||+..+.+++..+.+ |-+.|+.+.|++.-. .|+++++|.+|+||+.++..+ +..+.+|
T Consensus        58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~-iavltGH  134 (1202)
T KOG0292|consen   58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC-IAVLTGH  134 (1202)
T ss_pred             eecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce-EEEEecC
Confidence            4899999999999999999999999999999997 778899999999988 799999999999999999885 8889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------ee-eEe-ecCCCeEEEEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------------------PS-SCI-TYEAPFSSLAF  130 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~----------------------------~v-~~~-~h~~~ItsLaf  130 (568)
                      ...|+|..|+|....|++++.|.+|++||+..-+                            .+ .++ +|+..|+-++|
T Consensus       135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf  214 (1202)
T KOG0292|consen  135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF  214 (1202)
T ss_pred             ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence            9999999999999999999999999999984210                            01 112 58889999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       131 sPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +|.-.++++|+.|+.|++|.+...+ ...+-...+|.+.|.++-|+|.            ..++++.+.|+.|+|||+..
T Consensus       215 hpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~------------q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  215 HPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPH------------QDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCc------------cceeEecCCCccEEEEeccc
Confidence            9999999999999999999998653 3444444599999999999994            45677778899999999976


Q ss_pred             CCcc
Q 008356          211 SVTT  214 (568)
Q Consensus       211 ~~~~  214 (568)
                      ....
T Consensus       282 Rt~v  285 (1202)
T KOG0292|consen  282 RTSV  285 (1202)
T ss_pred             ccce
Confidence            5543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.7e-20  Score=205.27  Aligned_cols=194  Identities=16%  Similarity=0.208  Sum_probs=170.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|||..-.|+++-..|.|++||.+-+.++..|.. |+++|+.++|+|... +|++|++|-.|+||+.....+ +..+.+|
T Consensus        16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc-lftL~GH   92 (1202)
T KOG0292|consen   16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC-LFTLLGH   92 (1202)
T ss_pred             ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCC-eEEecCCccEEEEEeccccee-hhhhccc
Confidence            6999999999999999999999998999999987 889999999999998 999999999999999998875 6678999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC----
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP----  155 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~----  155 (568)
                      .+.|..+.|++.--+|++++.|.+|+||+..+++++.++ +|...|.|..|+|....+++++-|-+|+|||+..-.    
T Consensus        93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~  172 (1202)
T KOG0292|consen   93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK  172 (1202)
T ss_pred             cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence            999999999999999999999999999999999999888 799999999999999999999999999999996311    


Q ss_pred             Cc----------------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          156 QP----------------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       156 ~~----------------------v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .+                      +-..-..+|...|+-++|+|.-            .++++++.|+.|++|...
T Consensus       173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl------------pliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL------------PLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc------------ceEEecCCcceeeEEEec
Confidence            00                      1111123899999999999954            455666779999999753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.85  E-value=2.8e-19  Score=208.08  Aligned_cols=190  Identities=19%  Similarity=0.342  Sum_probs=154.7

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |++ ++.+|++++.||.|+|||+.+++.+..+.+ |...|.+++|++....+|++|+.||.|++||+..... +..+..+
T Consensus       540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~  617 (793)
T PLN00181        540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK  617 (793)
T ss_pred             eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC
Confidence            554 468999999999999999999998888886 7788999999974334899999999999999987763 4445444


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--
Q 008356           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP--  155 (568)
Q Consensus        81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~--  155 (568)
                       ..|.++.|++ ++.+|++|+.|+.|++||+++.+ ++..+ .|...|.+++|. ++.+|++++.|+.|+|||++...  
T Consensus       618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence             5799999965 79999999999999999998865 34333 788999999997 67899999999999999998531  


Q ss_pred             ---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          156 ---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       156 ---~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                         .++..+.  +|...+..++|++++++|+++            +.|+.|++|+..
T Consensus       696 ~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasg------------s~D~~v~iw~~~  738 (793)
T PLN00181        696 INETPLHSFM--GHTNVKNFVGLSVSDGYIATG------------SETNEVFVYHKA  738 (793)
T ss_pred             cCCcceEEEc--CCCCCeeEEEEcCCCCEEEEE------------eCCCEEEEEECC
Confidence               3344444  788999999999976655544            568889999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.85  E-value=2.4e-21  Score=195.81  Aligned_cols=182  Identities=19%  Similarity=0.304  Sum_probs=158.4

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS   81 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~   81 (568)
                      .+.+.|++|+.|.+|+|||+++++++..+.. |.+.|-.+.|+..   ++++++.|.++.+||+....  ...+.+.+|.
T Consensus       245 yd~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             ccceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence            3567899999999999999999999988875 6667777888842   89999999999999997654  2255688999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|+.+.|+  .++|++++.|++|++|++.+++.++++ +|...|.|+.+.  ++++++|+.|.+|++||+..+ .++.+
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G-~cLRv  395 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRV  395 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc-HHHHH
Confidence            999999997  679999999999999999999999988 799999998886  889999999999999999988 45667


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.  +|..-|.++.|+.              ..+++|+.||+|++||+..
T Consensus       396 Le--GHEeLvRciRFd~--------------krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  396 LE--GHEELVRCIRFDN--------------KRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             Hh--chHHhhhheeecC--------------ceeeeccccceEEEEeccc
Confidence            76  8999999999964              4688889999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.85  E-value=5.2e-20  Score=186.95  Aligned_cols=170  Identities=17%  Similarity=0.227  Sum_probs=149.3

Q ss_pred             eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356           29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (568)
Q Consensus        29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IW  108 (568)
                      .+.+++ |.+.|+|+++.|-++ .|++|+.|++++|||+.+++ +...+.+|...|..+++++..-|+++++.|+.|++|
T Consensus       144 ~rVi~g-HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  144 YRVISG-HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhhh-ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            344554 888999999999876 89999999999999999998 466789999999999999999999999999999999


Q ss_pred             ECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          109 DPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       109 Dlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      |++..+.++.+ +|-..|.|++.+|.-..|++|+.|..++|||+|+.. .+.++.  +|..+|..+.+.|-         
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~--GH~~~V~~V~~~~~---------  288 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLS--GHTNPVASVMCQPT---------  288 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEec--CCCCcceeEEeecC---------
Confidence            99999988776 799999999999999999999999999999999984 455555  89999999999874         


Q ss_pred             CCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          188 CKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       188 ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                         +..+++++.|++|++||++...+...
T Consensus       289 ---dpqvit~S~D~tvrlWDl~agkt~~t  314 (460)
T KOG0285|consen  289 ---DPQVITGSHDSTVRLWDLRAGKTMIT  314 (460)
T ss_pred             ---CCceEEecCCceEEEeeeccCceeEe
Confidence               34567778899999999998665433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.84  E-value=5.9e-20  Score=187.85  Aligned_cols=192  Identities=17%  Similarity=0.270  Sum_probs=166.0

Q ss_pred             CEEEEEECCCcEEEEECCCCcee----EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------------
Q 008356            7 EHLASISLSGDLILHNLASGAKA----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR------------   70 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v----~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~------------   70 (568)
                      ..|++++.|.++++|..+.++.+    ...+ +|+..|.++...+++. .+++|+.|.+|+||+....            
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence            46999999999999998876632    2223 4888899999999997 8999999999999993110            


Q ss_pred             ------------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEE
Q 008356           71 ------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        71 ------------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~La  138 (568)
                                  ..++..+.+|.++|.++.|++ ...+++++.|.+|+.||+.++..+..+.....+.|+.++|..++|+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence                        022567889999999999997 7889999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +|+.|..+++||+|++.-.+......+|.+.|.++.|+|.           +..+|++++.|+++++||+|...
T Consensus       317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----------~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----------NEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------CceEEEEEecCCeEEEEEeccCC
Confidence            9999999999999987665555666699999999999996           56678889999999999999755

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.84  E-value=1.3e-20  Score=197.44  Aligned_cols=210  Identities=17%  Similarity=0.190  Sum_probs=167.3

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |.| .+.+|++++.|+.|+||++.. +++++.+.+ |...|++++|+.+|. .|++++.|+.|++||++++.+..+  ..
T Consensus       222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~--f~  297 (503)
T KOG0282|consen  222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSR--FH  297 (503)
T ss_pred             hccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCC-eeeeeecceeeeeeccccceEEEE--Ee
Confidence            445 678999999999999999976 889999997 788899999999998 799999999999999999984332  23


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           80 HSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        80 H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      -...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+ .|-+.|..+.|-++|+.+++.+.|+.|+||+.+..- +
T Consensus       298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~  376 (503)
T KOG0282|consen  298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-P  376 (503)
T ss_pred             cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-c
Confidence            34568999999966 89999999999999999999998888 588999999999999999999999999999998652 2


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEec-----------------------------------cCCCCeEEEEecCCCc
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDET-----------------------------------TCKAETALLGGAVGDS  202 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s-----------------------------------~ssd~~~Lls~s~Dg~  202 (568)
                      ++.+. ..+.-...++..+|+++++++.+                                   -+.++.+|++|..||.
T Consensus       377 ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  377 IKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             chhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence            22211 12333445566666666554211                                   2446677888888999


Q ss_pred             EEcCCCCCCCccccc
Q 008356          203 ILMPDPLPSVTTSSV  217 (568)
Q Consensus       203 V~VWDlr~~~~~~s~  217 (568)
                      +.+||-++-.....+
T Consensus       456 v~~wdwkt~kl~~~l  470 (503)
T KOG0282|consen  456 VNFWDWKTTKLVSKL  470 (503)
T ss_pred             EEEeechhhhhhhcc
Confidence            999998875544433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.84  E-value=7.5e-20  Score=190.65  Aligned_cols=197  Identities=20%  Similarity=0.300  Sum_probs=159.5

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCCCce-------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CC
Q 008356            1 MYNCKD-EHLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RS   71 (568)
Q Consensus         1 afSpdG-~~LasGs~DG~V~VWDl~tg~~-------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~   71 (568)
                      +||+.. .+|++++.|+.|.+||+.....       ...+.+ |...|.+++|++....+|+++++|+.+.|||++. ..
T Consensus       184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~  262 (422)
T KOG0264|consen  184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS  262 (422)
T ss_pred             ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence            366654 4789999999999999964322       234454 8899999999999888999999999999999985 33


Q ss_pred             ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 008356           72 PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVV  147 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~  147 (568)
                      ...+...+|.++|+|++|+| ++..||+|+.|++|++||+|+-+ ++..+ .|+..|.++.|+|+ ..+||+.+.|+.+.
T Consensus       263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            34677889999999999999 88899999999999999999854 44445 79999999999996 57888999999999


Q ss_pred             EEECCCCCC-----------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          148 FYDIRGKPQ-----------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       148 VWDlrt~~~-----------~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |||+..-..           +.-.+.--||...|..+.|+|+.+++           +++.+.|+.+.||++.
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQMA  404 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE-----------EEEecCCceEEEeecc
Confidence            999974211           12223334899999999999986654           5556779999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.84  E-value=5.8e-20  Score=191.47  Aligned_cols=196  Identities=22%  Similarity=0.381  Sum_probs=160.5

Q ss_pred             CCC-CEEEEEECCCcEEEEECCCCc----------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-
Q 008356            4 CKD-EHLASISLSGDLILHNLASGA----------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-   71 (568)
Q Consensus         4 pdG-~~LasGs~DG~V~VWDl~tg~----------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-   71 (568)
                      |+. ..||+++..+.|+|||..+..          .-..+.+|++ .-..+.|++.....|++++.|++|++||+.... 
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~  212 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK  212 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEeeccCCCcEEEEecccccc
Confidence            444 567778889999999976422          1125677555 346699999988889999999999999995432 


Q ss_pred             -----ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC--CceeeEe-ecCCCeEEEEEec-CCCEEEEEE
Q 008356           72 -----PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS--RRPSSCI-TYEAPFSSLAFID-DDWILTAGT  141 (568)
Q Consensus        72 -----~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt--~~~v~~~-~h~~~ItsLafsP-dg~~LasGs  141 (568)
                           .....+.+|...|..++|++ +..+|++++.|+.+.|||+|+  .++.... .|.+.|.|++|+| ++.+||+|+
T Consensus       213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S  292 (422)
T KOG0264|consen  213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS  292 (422)
T ss_pred             CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence                 23567889999999999999 888999999999999999995  4444443 6999999999999 577899999


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .|++|.|||+|+..+++..+.  +|...|.+|.|+|.           .+.+|++++.|+.+.|||+.....
T Consensus       293 ~D~tV~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh-----------~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  293 ADKTVALWDLRNLNKPLHTFE--GHEDEVFQVEWSPH-----------NETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             CCCcEEEeechhcccCceecc--CCCcceEEEEeCCC-----------CCceeEecccCCcEEEEecccccc
Confidence            999999999999887776666  89999999999996           567788888899999999866443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.4e-19  Score=177.10  Aligned_cols=186  Identities=17%  Similarity=0.269  Sum_probs=160.1

Q ss_pred             CCCcEEEEECCCCceeEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-
Q 008356           14 LSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-   91 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-   91 (568)
                      ..|.+.|.++..++.+.++..- ..+.+.+++|+++.++.+++++.||.++|||+.....+++.++.|..+|.++.|++ 
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence            3689999999766655554421 36778999999999989999999999999998777767899999999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 008356           92 DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA  169 (568)
Q Consensus        92 dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~  169 (568)
                      +.+.+++++.|++|++||...++.+.++ +|...|...+|+| ..+++++++.|+.+++||++...+... +.  .|...
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~--ah~~E  192 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE--AHNSE  192 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE--eccce
Confidence            7788899999999999999988888888 7999999999999 578999999999999999998755444 33  68889


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       170 VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      |.++.|+.-           +..++++++.|+.|+.||+|+...
T Consensus       193 il~cdw~ky-----------~~~vl~Tg~vd~~vr~wDir~~r~  225 (311)
T KOG0277|consen  193 ILCCDWSKY-----------NHNVLATGGVDNLVRGWDIRNLRT  225 (311)
T ss_pred             eEeeccccc-----------CCcEEEecCCCceEEEEehhhccc
Confidence            999999874           566788888999999999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=8.7e-20  Score=198.82  Aligned_cols=199  Identities=19%  Similarity=0.231  Sum_probs=166.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----ceeE
Q 008356            4 CKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----PKVS   75 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~----~~v~   75 (568)
                      .+|.+|++|++|.++++|.++++.    ++....+ |...|.+++++..+..+|++++.|+++++|++...+    +...
T Consensus       375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~  453 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL  453 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence            356799999999999999885433    2344444 778899999999888899999999999999996522    1122


Q ss_pred             ----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           76 ----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        76 ----~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                          ....|...|+|++++|+.++|+||+.|++.++|+++..+...++ +|...+.|+.|++..+.+++++.|++|+||.
T Consensus       454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence                34579999999999999999999999999999999988888887 7999999999999999999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                      +.+.. +.+.+.  +|...|..+.|-.+++.            |++++.||-|++|++....+..++-
T Consensus       534 is~fS-ClkT~e--GH~~aVlra~F~~~~~q------------liS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  534 ISTFS-CLKTFE--GHTSAVLRASFIRNGKQ------------LISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             eccce-eeeeec--CccceeEeeeeeeCCcE------------EEeccCCCcEEEEeccchhhhhhhh
Confidence            99984 456666  89999999999886554            4555669999999999877765553

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.5e-20  Score=203.82  Aligned_cols=197  Identities=18%  Similarity=0.292  Sum_probs=159.7

Q ss_pred             CCCEEEEEECCCcEEEEECCC---CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            5 KDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~t---g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.++||+++..|.|.+||+..   .+.+..|.. |...+++++|++...++|++|++||.|++||++.... ...+....
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nS  176 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNS  176 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccc
Confidence            357899999999999999976   344455664 7888999999999999999999999999999988774 55667788


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 008356           82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP  157 (568)
Q Consensus        82 ~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~-~~~  157 (568)
                      ..|.+|.|+| .+++++++.+.|.|++||+|... +...+ .|.++|.|+.|+|++.+||+|+.|+.|+|||+... ..+
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            8899999999 88999999999999999999754 33333 79999999999999999999999999999999854 333


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCe-EEEeccCCCCeEEEEecCCCcEEcCCCC-CCCcccc
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPV-FIDETTCKAETALLGGAVGDSILMPDPL-PSVTTSS  216 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~-Las~s~ssd~~~Lls~s~Dg~V~VWDlr-~~~~~~s  216 (568)
                      ..++.   -..+|.+|.|-|..++ |++++          -..|-.|+|||+| |+-+-..
T Consensus       257 ~~tIn---Tiapv~rVkWRP~~~~hLAtcs----------mv~dtsV~VWDvrRPYIP~~t  304 (839)
T KOG0269|consen  257 KHTIN---TIAPVGRVKWRPARSYHLATCS----------MVVDTSVHVWDVRRPYIPYAT  304 (839)
T ss_pred             eeEEe---ecceeeeeeeccCccchhhhhh----------ccccceEEEEeecccccccee
Confidence            44443   4578999999997654 23331          1238899999996 5554333

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.8e-19  Score=194.45  Aligned_cols=176  Identities=20%  Similarity=0.333  Sum_probs=147.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      .|+++|.+|++|..+|.|.|||..+.+.+..+.++|...|.+++|+.   +.+.+|+.|+.|..+|++..+.....+.+|
T Consensus       224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H  300 (484)
T KOG0305|consen  224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGH  300 (484)
T ss_pred             EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence            37899999999999999999999999999999988899999999993   379999999999999998877655568899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec-CCCEEEEEE--cCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGT--SNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP-dg~~LasGs--~DG~V~VWDlrt~~~  156 (568)
                      ...|..+.|++|++++++|+.|+.|.|||....+++..+ .|...|.+++|+| ...+||+|+  .|+.|++||..++..
T Consensus       301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR  380 (484)
T ss_pred             cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence            999999999999999999999999999999776666555 8999999999999 467888854  699999999997632


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~La  183 (568)
                          +....-...|.+|.|++..+-|+
T Consensus       381 ----i~~vdtgsQVcsL~Wsk~~kEi~  403 (484)
T KOG0305|consen  381 ----IDSVDTGSQVCSLIWSKKYKELL  403 (484)
T ss_pred             ----ecccccCCceeeEEEcCCCCEEE
Confidence                22223445566666666554443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2.6e-19  Score=191.96  Aligned_cols=200  Identities=15%  Similarity=0.184  Sum_probs=178.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |||..-.++++-.+|.|.|||.++...++.+.. .+.+|++.+|-...+ .+++|++|..|+||+..+.+ +++.+..|.
T Consensus        21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e-kV~~FeAH~   97 (794)
T KOG0276|consen   21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE-KVKTFEAHS   97 (794)
T ss_pred             cCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccc-eEEEecCCceEEEEecccce-eeEEeeccc
Confidence            788889999999999999999999999999886 677889999998766 89999999999999999987 589999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      +.|.|++.+|..-++++++.|-+|++||-+.+ .+.+++ +|...|.+++|+| |.+.+++++-|++|+||.+... .+.
T Consensus        98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n  176 (794)
T KOG0276|consen   98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN  176 (794)
T ss_pred             cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence            99999999999999999999999999999875 556666 7999999999999 6789999999999999999876 455


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ..+.  +|...|+|++|-+.          .+..+|++++.|..|+|||...-.+..++
T Consensus       177 fTl~--gHekGVN~Vdyy~~----------gdkpylIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  177 FTLE--GHEKGVNCVDYYTG----------GDKPYLISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             eeee--ccccCcceEEeccC----------CCcceEEecCCCceEEEeecchHHHHHHh
Confidence            6666  89999999999883          47888999999999999999876665544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.7e-18  Score=172.64  Aligned_cols=213  Identities=15%  Similarity=0.195  Sum_probs=174.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--DGtV~VWDl~t~~~~v~~l~   78 (568)
                      .|+.+|++|++++.|..|+|||..+++.++.+.. ++..+..++|..... .++.++.  |.+|+..++.+++ .++.+.
T Consensus        21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dNk-ylRYF~   97 (311)
T KOG1446|consen   21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDNK-YLRYFP   97 (311)
T ss_pred             EecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecCc-eEEEcC
Confidence            3889999999999999999999999999999886 555677889987776 4555554  8899999998887 488999


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP  157 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~-~~~  157 (568)
                      +|...|+.++.+|-+..+++++.|++|++||+|..++...+... .-..++|+|+|-++|++.....|+|||+|.. +.|
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP  176 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP  176 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence            99999999999998899999999999999999988877666433 3345899999999999999889999999975 456


Q ss_pred             eEEEeec-CCCCCeeEEEEccCCCeEEEec---------------------------------cCCCCeEEEEecCCCcE
Q 008356          158 LTVLRAC-SSSEAVSSLCWQRAKPVFIDET---------------------------------TCKAETALLGGAVGDSI  203 (568)
Q Consensus       158 v~~l~~~-~h~~~VtsLafspdg~~Las~s---------------------------------~ssd~~~Lls~s~Dg~V  203 (568)
                      ...+... +.....+.|.|+|+|++|+...                                 -..++..+++++.||.|
T Consensus       177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i  256 (311)
T KOG1446|consen  177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI  256 (311)
T ss_pred             ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence            5655532 4456789999999999976322                                 13577789999999999


Q ss_pred             EcCCCCCCCccccc
Q 008356          204 LMPDPLPSVTTSSV  217 (568)
Q Consensus       204 ~VWDlr~~~~~~s~  217 (568)
                      .+|+++.......+
T Consensus       257 ~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  257 HVWNLETGKKVAVL  270 (311)
T ss_pred             EEEEcCCCcEeeEe
Confidence            99999776654443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=9.1e-20  Score=187.89  Aligned_cols=194  Identities=20%  Similarity=0.310  Sum_probs=154.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-   79 (568)
                      +|+||+++|++++.|..+.+||+.+|.....+...+...+.+++|.|||. .|++|+.|+.+..||++++.  ...+++ 
T Consensus       276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv  352 (519)
T KOG0293|consen  276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV  352 (519)
T ss_pred             EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence            59999999999999999999999999998888766677888999999998 69999999999999998876  333333 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEE------------------------------
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLA------------------------------  129 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLa------------------------------  129 (568)
                      ....|.+++..+||+++++.+.|..|++|+.++......+....+|+++.                              
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k  432 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK  432 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence            34679999999999999999999988888876543332222222333222                              


Q ss_pred             --------------Eec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 008356          130 --------------FID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL  194 (568)
Q Consensus       130 --------------fsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~L  194 (568)
                                    |-- +..++++|++|+.|+||+...+ +++.++.  +|...|++++|+|.           +...+
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~Ls--GHs~~vNcVswNP~-----------~p~m~  498 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLS--GHSKTVNCVSWNPA-----------DPEMF  498 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeec--CCcceeeEEecCCC-----------CHHHh
Confidence                          222 3467889999999999998887 5677777  99999999999996           44456


Q ss_pred             EEecCCCcEEcCCCCCC
Q 008356          195 LGGAVGDSILMPDPLPS  211 (568)
Q Consensus       195 ls~s~Dg~V~VWDlr~~  211 (568)
                      ++++.||+|++|-+.++
T Consensus       499 ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  499 ASASDDGTIRIWGPSDN  515 (519)
T ss_pred             hccCCCCeEEEecCCcc
Confidence            77788999999987655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.82  E-value=2.2e-20  Score=187.51  Aligned_cols=175  Identities=19%  Similarity=0.278  Sum_probs=155.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      |+|||++|++|+.||.|.|||..+|+..+.++-       -++..|.|+.|+.|.+ .+++|+.||.|++|.+.++.+..
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClR  299 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLR  299 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHH
Confidence            899999999999999999999999986554432       1467899999999998 89999999999999999999877


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      +.-+.|...|+|+.|+.|+..|++++.|.++++.-+..|+++..+ +|...|+...|.++|..+++++.||+|+||+..+
T Consensus       300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence            777799999999999999999999999999999999999999888 7999999999999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccC
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspd  178 (568)
                      .+ ++..++..+...+|.++-.-|.
T Consensus       380 te-C~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  380 TE-CLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             hh-hhhhccCCCCcccceeEEEcCC
Confidence            74 4455555566678888888774

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.8e-18  Score=170.70  Aligned_cols=196  Identities=16%  Similarity=0.277  Sum_probs=157.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~   76 (568)
                      +|+|.|++|++|+.|.++.||.-..+  +++..+.+ |+..|.+++|+++|. +|+++++|+.|-||.++...  .....
T Consensus        68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            68999999999999999999986644  46777887 778899999999998 99999999999999997443  23667


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      +..|...|..+.|+|...+|++++.|.+|++|+-..   -.++..+ .|...+.+++|++.|..|++++.|++|+||-..
T Consensus       146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            899999999999999999999999999999998763   2456666 578899999999999999999999999999843


Q ss_pred             CCC-----C-------------------ceEEEe----------------ecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356          153 GKP-----Q-------------------PLTVLR----------------ACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (568)
Q Consensus       153 t~~-----~-------------------~v~~l~----------------~~~h~~~VtsLafspdg~~Las~s~ssd~~  192 (568)
                      ..-     .                   .+.+++                ...|...|++++|.|.           ...
T Consensus       226 ~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-----------~~~  294 (312)
T KOG0645|consen  226 TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-----------VSN  294 (312)
T ss_pred             cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-----------CCC
Confidence            210     0                   011111                0136667777887773           345


Q ss_pred             EEEEecCCCcEEcCCCC
Q 008356          193 ALLGGAVGDSILMPDPL  209 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWDlr  209 (568)
                      +|++++.||.|++|.+.
T Consensus       295 ~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  295 RLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceeecCCCceEEEEEec
Confidence            67777889999999753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.82  E-value=1.4e-18  Score=192.47  Aligned_cols=268  Identities=20%  Similarity=0.233  Sum_probs=203.3

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      +++++++..+++|++||..++..+.. +.+ |.+.|.++++..-+ .++++|+.|.++++||..++++ .+.+.+|...|
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C-~~~l~gh~stv  294 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGEC-THSLQGHTSSV  294 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcE-EEEecCCCceE
Confidence            56788999999999999999998887 776 78889999998744 4899999999999999988885 77889999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      .++...  ..++++|+.|.+|++||+.++..+.++. |.++|+++.++  +.++++|+.|+.|+|||+++. ++++.+. 
T Consensus       295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~-  368 (537)
T KOG0274|consen  295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLS-  368 (537)
T ss_pred             EEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeec-
Confidence            998876  5678889999999999999999999996 99999999998  789999999999999999976 5667777 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC-CccccccccccccCCCCCcccCCCCCCccCc
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS-VTTSSVSLSTAVSGSRPNSRSGPSAEASSLT  242 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~-~~~~s~~~s~~~~~~~sslt~sssG~~ss~~  242 (568)
                       +|...|+++.+...             .++++++.|+.|++||++.. .+...+......                   
T Consensus       369 -gH~~~V~sl~~~~~-------------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~-------------------  415 (537)
T KOG0274|consen  369 -GHTGRVYSLIVDSE-------------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL-------------------  415 (537)
T ss_pred             -CCcceEEEEEecCc-------------ceEEeeeeccceEeecCCchhhhhhhhcCCccc-------------------
Confidence             89999999987651             57888899999999999887 444443221110                   


Q ss_pred             cCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCC-CCCCccccC
Q 008356          243 VGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPID-KKPSSMLFP  321 (568)
Q Consensus       243 ~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~-~~~~~~~~~  321 (568)
                                         +..+. .+.++..       +--.|      ..+++||+.++.++..+... .-....+  
T Consensus       416 -------------------v~~l~-~~~~~Lv-------s~~aD------~~Ik~WD~~~~~~~~~~~~~~~~~v~~l--  460 (537)
T KOG0274|consen  416 -------------------VSSLL-LRDNFLV-------SSSAD------GTIKLWDAEEGECLRTLEGRHVGGVSAL--  460 (537)
T ss_pred             -------------------ccccc-cccceeE-------ecccc------ccEEEeecccCceeeeeccCCcccEEEe--
Confidence                               01111 1111111       11112      35899999999999998873 3322222  


Q ss_pred             CCCcccccccCCCceeeeeeccCCCCccc
Q 008356          322 SSSRRFPYAEDGSNEHSVFDWKSSSTSKQ  350 (568)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (568)
                      ....-.-+......--.|||..++...++
T Consensus       461 ~~~~~~il~s~~~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  461 ALGKEEILCSSDDGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             ecCcceEEEEecCCeeEEEecccCchhhh
Confidence            11122333334444557889988887773

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.82  E-value=2.1e-19  Score=189.26  Aligned_cols=200  Identities=15%  Similarity=0.193  Sum_probs=153.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~---   73 (568)
                      ++.|.|.+|++|+.|-+|++||+...    +..++++......|+.+.|++.+. .|++.+.....+|+|-++.+..   
T Consensus       174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeeeee
Confidence            35789999999999999999998632    234455544567899999999998 5666667788999998765421   


Q ss_pred             --------eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEee------cCCCeEEEEEecCCCEE
Q 008356           74 --------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCIT------YEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        74 --------v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~~------h~~~ItsLafsPdg~~L  137 (568)
                              ...-++|...++|.+|+| +...+++++.||++++||+...+ ...++.      ..-.++.++|+++|++|
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence                    223467999999999999 66789999999999999998643 344443      23358899999999999


Q ss_pred             EEEEcCCeEEEEECCCCCC-ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          138 TAGTSNGRVVFYDIRGKPQ-PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~-~v~~l~~~~h~~--~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      |+|+.||.|.+|+.+.... +...++ -.|..  .|+||.|+++|++|++-            +.|+.+++||+|.+...
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk-~AH~~g~~Itsi~FS~dg~~LlSR------------g~D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVK-DAHLPGQDITSISFSYDGNYLLSR------------GFDDTLKVWDLRQFKKP  399 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEee-eccCCCCceeEEEeccccchhhhc------------cCCCceeeeeccccccc
Confidence            9999999999999865422 222222 25655  89999999987766554            56999999999988753

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-18  Score=170.89  Aligned_cols=204  Identities=18%  Similarity=0.217  Sum_probs=173.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      ||.+|.+|.++++|.++.||-..+|+.+.++.+ |.+.|.|++.+.+.+ .+++|+.|.++++||+.+++++  ..-...
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~l--a~~k~~   93 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQL--ATWKTN   93 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEE--EEeecC
Confidence            789999999999999999999989999999998 888899999999887 7999999999999999999843  233456


Q ss_pred             CCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCC-------CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           82 APTAGISFSSDDKIIASVGL-----DKKLYTYDPGS-------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~-----DGtV~IWDlrt-------~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      .+|..+.|+.++++++.+.+     .+.|.++|++.       .+++..+ .++..++.+.|.|-+++|++|.+||.|.+
T Consensus        94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~  173 (327)
T KOG0643|consen   94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI  173 (327)
T ss_pred             CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence            78999999999999887754     45799999983       4445444 67889999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccc
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV  223 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~  223 (568)
                      ||++++.+.+....  .|...|+.++++++            ..++++++.|.+-++||++.+....++....|.
T Consensus       174 ~da~~g~~~v~s~~--~h~~~Ind~q~s~d------------~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv  234 (327)
T KOG0643|consen  174 YDARTGKELVDSDE--EHSSKINDLQFSRD------------RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV  234 (327)
T ss_pred             EEcccCceeeechh--hhccccccccccCC------------cceEEecccCccceeeeccceeeEEEeeecccc
Confidence            99999866555544  68889999999995            456677788999999999998887777665553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.81  E-value=1.4e-19  Score=180.96  Aligned_cols=202  Identities=13%  Similarity=0.198  Sum_probs=160.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC------------C------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS------------G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL   62 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t------------g------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV   62 (568)
                      +|+|||.++++|+.|..|+|+|++.            +      -.++.+.. |-+.|+++.|+|... +|++|+.|++|
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~-ILiS~srD~tv  196 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRET-ILISGSRDNTV  196 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhh-eEEeccCCCeE
Confidence            5999999999999999999999872            1      12445554 667889999999986 99999999999


Q ss_pred             EEEECCCCCce-eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEE
Q 008356           63 HLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        63 ~VWDl~t~~~~-v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~L  137 (568)
                      ++||+.....+ .........+|.++.|+|.|.+|+.|.+.-++++||+.+.++...-    +|.+.|+++.+++.+++.
T Consensus       197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence            99999654321 1122334578999999999999999999999999999998876543    588999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++++.||.|+|||--...+ +..+........|.+..|..+|+|+            ++.++|..|++|++....+...+
T Consensus       277 vTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~kyi------------LsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKYI------------LSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeEE------------eecCCcceeeeeeecCCceEEEE
Confidence            9999999999999877643 3333322234579999999976665            44567999999999776655544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.81  E-value=2e-19  Score=189.52  Aligned_cols=212  Identities=20%  Similarity=0.333  Sum_probs=168.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEe-eC-----------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL-KD-----------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l-~~-----------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~   68 (568)
                      .|++.|+.|++.+.....+|+|- .|..+.++ ++           +|-..++|.+|+|..+..|++++.||+++|||+.
T Consensus       221 ~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  221 QYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN  299 (641)
T ss_pred             eecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence            48899999999988899999995 45443332 21           3667789999999999899999999999999997


Q ss_pred             CCCceeEEecc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEe--ecCC--CeEEEEEecCCCEE
Q 008356           69 GRSPKVSWLKQ-----HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI--TYEA--PFSSLAFIDDDWIL  137 (568)
Q Consensus        69 t~~~~v~~l~~-----H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~--~h~~--~ItsLafsPdg~~L  137 (568)
                      ..+.....++.     ..-+++.++|++++++|++|+.||.|.+||.+...  +...+  .|..  .|+||.|+++|++|
T Consensus       300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L  379 (641)
T KOG0772|consen  300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL  379 (641)
T ss_pred             CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence            66544444332     23468999999999999999999999999986532  33333  4655  89999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++-+.|+.++|||+|+.++++.+........+-+.++|+|+.++|+++...      .-+...+.+++||...+.....+
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~------~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA------PNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc------cCCCCCceEEEEeccceeeEEEe
Confidence            999999999999999998888776655555677889999999999888542      22334678999999888876665


Q ss_pred             cc
Q 008356          218 SL  219 (568)
Q Consensus       218 ~~  219 (568)
                      ..
T Consensus       454 ~i  455 (641)
T KOG0772|consen  454 DI  455 (641)
T ss_pred             cC
Confidence            54

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.81  E-value=6.5e-19  Score=175.89  Aligned_cols=194  Identities=15%  Similarity=0.249  Sum_probs=161.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |++|+++|++++.|.+|+.||+++|++++.+++ |...|+.+.-+..|..++.++++||+++|||++.... ++ .....
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~-t~~~k  174 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IK-TFENK  174 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hh-ccccc
Confidence            788999999999999999999999999999997 7788998887778888899999999999999998763 22 33446


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCc
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQP  157 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~---~~~  157 (568)
                      .+++++.|..++..+.+|+-|+.|++||++.+....+. +|.+.|+.+..+++|.++.+-+-|.+|++||++-.   .++
T Consensus       175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            67999999999999999999999999999999888877 79999999999999999999999999999999853   233


Q ss_pred             eEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          158 LTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       158 v~~l~~~~h~~~V--tsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.++....|.-.+  ...+|+|++.            .+-+++.|+.+++||...
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~------------~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGT------------KITAGSADRFVYVWDTTS  297 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCC------------ccccccccceEEEeeccc
Confidence            5555544444333  3445666544            445556699999999654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.81  E-value=7.6e-19  Score=182.13  Aligned_cols=196  Identities=17%  Similarity=0.262  Sum_probs=169.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      ...+++|+.|..+.++|...++.+..+++ |...|..+.++++.. .+++++.|..|+||....... ......|..+|+
T Consensus       231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~  307 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE-PTSSRPHEEPVT  307 (506)
T ss_pred             CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchh-heeecCCcceEEeeccccccC-ccccccccccce
Confidence            46789999999999999999999999998 667788899999988 799999999999999976653 556788999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus        86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~  162 (568)
                      .+..+|.+.||++++.|++..+.|++++..+....++   -.+++.+|+|||.+|.+|..|+.|+|||+..+. .+..+ 
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~F-  385 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKF-  385 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccC-
Confidence            9999999999999999999999999999988777654   348999999999999999999999999999875 23333 


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       163 ~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                       .+|.++|..++|+.+|-||++            ++.|+.|++||+|+.....++..
T Consensus       386 -pght~~vk~i~FsENGY~Lat------------~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  386 -PGHTGPVKAISFSENGYWLAT------------AADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             -CCCCCceeEEEeccCceEEEE------------EecCCeEEEEEehhhcccceeec
Confidence             489999999999997655544            46699999999998775555443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.80  E-value=3.6e-18  Score=174.21  Aligned_cols=190  Identities=17%  Similarity=0.295  Sum_probs=156.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+.+|.+||+|+.+|.|+||+..++.....+.. .-..|.-++|+|.+. +|+.|+.||.|.+|.+..+. ..+.+.+|
T Consensus       113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~Gh  189 (399)
T KOG0296|consen  113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSGH  189 (399)
T ss_pred             EEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecCC
Confidence            5899999999999999999999999998888864 334455599999886 89999999999999998864 47789999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----------------------------------------
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----------------------------------------  119 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-----------------------------------------  119 (568)
                      ..++++=.|.|+|+.++++..||+|++||+.+++++..+                                         
T Consensus       190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            999999999999999999999999999999776554321                                         


Q ss_pred             -------------------------------------------------------ecCCCeEEEEEecCCCEEEEEEcCC
Q 008356          120 -------------------------------------------------------TYEAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus       120 -------------------------------------------------------~h~~~ItsLafsPdg~~LasGs~DG  144 (568)
                                                                             .|+..|..+.|.+ ..+|++++.||
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence                                                                   1334455666766 57889999999


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .|+.||.|++ +....+.  +|...|.++++.|+++.            +++.+.|++.+||++.
T Consensus       349 ~v~~wDaRtG-~l~~~y~--GH~~~Il~f~ls~~~~~------------vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  349 KVRQWDARTG-QLKFTYT--GHQMGILDFALSPQKRL------------VVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEeeecccc-ceEEEEe--cCchheeEEEEcCCCcE------------EEEecCCCeEEEEecC
Confidence            9999999998 4445555  99999999999996555            4555668888888763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2e-18  Score=180.53  Aligned_cols=201  Identities=17%  Similarity=0.243  Sum_probs=168.2

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------CCcee
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------RSPKV   74 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--------~~~~v   74 (568)
                      +|+|.+|+.|+..|.|++|.+.+|+++..+.+ |-..|+|+.|+.|+. +|++|+.||.|.+|++..        ...+.
T Consensus        90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen   90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             CCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccce
Confidence            57888898888999999999999999988865 778899999999998 899999999999998721        22347


Q ss_pred             EEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           75 SWLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      +.+..|.-+|+++...+.  ..+|++++.|.++++||+..+..+..+.....|.+++++|-+..+++|+.+|.|.+.++.
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence            788999999999998873  468999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCC-------------CceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          153 GKP-------------QPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       153 t~~-------------~~v~~l~~~~h~~--~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      +-.             ...+.....+|.+  .|+|++++-            ++.+|++|+.||.|+|||+.......++
T Consensus       248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------DGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             cCCcccccccccccccccceeeeeccccCCcceeEEEEec------------CccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            432             0111222237777  899999887            4566777788999999999876654444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=5.2e-19  Score=192.81  Aligned_cols=184  Identities=17%  Similarity=0.247  Sum_probs=159.5

Q ss_pred             CEEEEEECCCcEEEEECCCCce---eEE-----eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            7 EHLASISLSGDLILHNLASGAK---AAE-----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~---v~~-----l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      .+|++++.|++|++|++...+.   ...     ....|+..|++++++|+.. +++||++|.+.+||++.... ....+.
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~vLs  502 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLGVLS  502 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEEEee
Confidence            5789999999999999865221   111     2234788899999999987 99999999999999999554 578899


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      +|...|.|+.|++..+.+++++.|++|+||.+.+..++.++ +|...|..+.|-.++..|++++.||.|+||++.+.. +
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-C  581 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-C  581 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-h
Confidence            99999999999999999999999999999999999999999 599999999999999999999999999999999984 4


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      ...+.  .|.+.|+++..++...            .+++++.|+.|.+|.
T Consensus       582 ~~tlD--~H~DrvWaL~~~~~~~------------~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  582 EMTLD--AHNDRVWALSVSPLLD------------MFVTGGGDGRIIFWK  617 (775)
T ss_pred             hhhhh--hccceeEEEeecCccc------------eeEecCCCeEEEEee
Confidence            45565  7999999999888543            456667799999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.80  E-value=3.1e-18  Score=181.05  Aligned_cols=200  Identities=15%  Similarity=0.213  Sum_probs=155.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeC-C--CeEEEEECCCCCceeEE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGD-D--GTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-D--GtV~VWDl~t~~~~v~~   76 (568)
                      |+|.|.++|+|...|+|+|||....+.  ..+++. -.+.|.+|.|+.+++.++++|-- +  |.+.+||--+.   +-.
T Consensus        67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v-~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---vGe  142 (603)
T KOG0318|consen   67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV-LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---VGE  142 (603)
T ss_pred             eCCCceEEeecCCcCcEEEEeccCcceeeeeeeee-cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---cce
Confidence            799999999999999999999865332  234443 56789999999999854444432 2  45777775432   456


Q ss_pred             eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           77 LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        77 l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      +.+|...|++++|-| ....+++|++|++|.+|+=.--+-...+ .|..-|.|+.|+|||.++++.+.||+|.+||=.++
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            899999999999999 6788999999999999984433333333 47788999999999999999999999999999988


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++.-.+-...+|.+.|.+++|+||+.            .+++.+.|.+++|||+.......++
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~------------~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDST------------QFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCc------------eEEEecCCceEEEEEeeccceEEEe
Confidence            64333322457999999999999654            4555567999999999776554444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.9e-18  Score=178.26  Aligned_cols=282  Identities=15%  Similarity=0.169  Sum_probs=206.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      .|+++|++||+++.|.+..+|++....   ...++.+ |...|.-+.|+||.+ +|++++.|..+.+||+.++......-
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhcc
Confidence            389999999999999999999976443   3566776 555677799999998 78888888889999999988544444


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      .+|...+.+++|.||+..+++|+.|+.+..||+.....-..-+ ....|.++++.+||+++++.+.|..|++|+......
T Consensus       309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d  388 (519)
T KOG0293|consen  309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD  388 (519)
T ss_pred             cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence            4556889999999999999999999999999997644222222 335699999999999999999999999999987632


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSA  236 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG  236 (568)
                       ...+   ....+|++++.+.++++++..            -.+..+.+||+....-...+..                 
T Consensus       389 -r~li---se~~~its~~iS~d~k~~Lvn------------L~~qei~LWDl~e~~lv~kY~G-----------------  435 (519)
T KOG0293|consen  389 -RGLI---SEEQPITSFSISKDGKLALVN------------LQDQEIHLWDLEENKLVRKYFG-----------------  435 (519)
T ss_pred             -hccc---cccCceeEEEEcCCCcEEEEE------------cccCeeEEeecchhhHHHHhhc-----------------
Confidence             1222   345789999999977664433            3489999999974333333211                 


Q ss_pred             CCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCCCCCC
Q 008356          237 EASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPS  316 (568)
Q Consensus       237 ~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~~~~~  316 (568)
                                             .+...+- -|+=|.+.+|.-+-+.-||      +.+|+|+...|..+..|.+|.|..
T Consensus       436 -----------------------hkq~~fi-IrSCFgg~~~~fiaSGSED------~kvyIWhr~sgkll~~LsGHs~~v  485 (519)
T KOG0293|consen  436 -----------------------HKQGHFI-IRSCFGGGNDKFIASGSED------SKVYIWHRISGKLLAVLSGHSKTV  485 (519)
T ss_pred             -----------------------ccccceE-EEeccCCCCcceEEecCCC------ceEEEEEccCCceeEeecCCccee
Confidence                                   1111111 2233556666777788889      779999999999999999998775


Q ss_pred             ccc-cCCCCccccc-ccCCCceeeeeeccCCCCccc
Q 008356          317 SML-FPSSSRRFPY-AEDGSNEHSVFDWKSSSTSKQ  350 (568)
Q Consensus       317 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  350 (568)
                      -.. | .+  .-|. +-++++|-.|==|+.+..-||
T Consensus       486 NcVsw-NP--~~p~m~ASasDDgtIRIWg~~~~~rq  518 (519)
T KOG0293|consen  486 NCVSW-NP--ADPEMFASASDDGTIRIWGPSDNNRQ  518 (519)
T ss_pred             eEEec-CC--CCHHHhhccCCCCeEEEecCCccccC
Confidence            443 4 22  1222 234556667777887766555

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=2.2e-18  Score=176.34  Aligned_cols=190  Identities=18%  Similarity=0.260  Sum_probs=152.5

Q ss_pred             CEEEEEECCCcEEEEECCC----------------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            7 EHLASISLSGDLILHNLAS----------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~t----------------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      .+.++-+..|.|+|||+..                .+.+..+.+ |+..=..|+|+|-....|++|..-+.|++|...++
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g  244 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG  244 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccCccccceEeeeeccC
Confidence            3556667889999999753                124556666 55556789999954445889988899999999776


Q ss_pred             Cce--eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---ceeeEeecCCCeEEEEEecCCCEEEEEEcCC
Q 008356           71 SPK--VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus        71 ~~~--v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~---~~v~~~~h~~~ItsLafsPdg~~LasGs~DG  144 (568)
                      .-.  ..-+.+|...|-.++|+| ....|++|+.||+|+|||+|.+   .++....|...|+.|.|+.+-.+||+|+.||
T Consensus       245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG  324 (440)
T KOG0302|consen  245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG  324 (440)
T ss_pred             ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence            532  234567999999999999 6788999999999999999998   3444457999999999999888999999999


Q ss_pred             eEEEEECCCC--CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          145 RVVFYDIRGK--PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       145 ~V~VWDlrt~--~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +++|||+|+.  .+|+..+.  .|..+|++|.|+|.           +...++.++.|.+|.+||+.-
T Consensus       325 t~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~-----------e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  325 TLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPH-----------EDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eEEEEEhhhccCCCcceeEE--eccCCeeEEEeccc-----------cCceEEeccCCCcEEEEEeec
Confidence            9999999963  35677777  69999999999996           445566666799999999854

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=6.6e-18  Score=168.85  Aligned_cols=219  Identities=17%  Similarity=0.213  Sum_probs=159.3

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+| ...+|+.++.||+|++|+++. |..+......|.+.|.+++|+.+|. .+++|+.|+.+++||+.+++  +..+.
T Consensus        34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q--~~~v~  110 (347)
T KOG0647|consen   34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQ--VSQVA  110 (347)
T ss_pred             EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCC--eeeee
Confidence            5889 456677899999999999976 5665555545788999999999997 79999999999999999986  77889


Q ss_pred             cCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeEeec-----------------------------------
Q 008356           79 QHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCITY-----------------------------------  121 (568)
Q Consensus        79 ~H~~~VtslafsPdg~--~LaSgs~DGtV~IWDlrt~~~v~~~~h-----------------------------------  121 (568)
                      .|.++|..+.|-+...  .|++|+.|++|++||+|...++..+..                                   
T Consensus       111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~  190 (347)
T KOG0647|consen  111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF  190 (347)
T ss_pred             ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh
Confidence            9999999999988544  899999999999999998665543221                                   


Q ss_pred             -------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-ceEEEeecCC-------CCCeeEEEEccCCCeEEEec
Q 008356          122 -------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-PLTVLRACSS-------SEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       122 -------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~-~v~~l~~~~h-------~~~VtsLafspdg~~Las~s  186 (568)
                             +-.++|++...|....+.|+-+|+|.|..++...+ .--.++.+..       -..|++|+|+|....     
T Consensus       191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-----  265 (347)
T KOG0647|consen  191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-----  265 (347)
T ss_pred             hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-----
Confidence                   22367888888877778899899988888876421 1122232211       125788999995443     


Q ss_pred             cCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCCCCC
Q 008356          187 TCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAE  237 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~  237 (568)
                             |++.+.||.+.+||-..   +..+..+...+...+...+...|.
T Consensus       266 -------lvTaGsDGtf~FWDkda---r~kLk~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  266 -------LVTAGSDGTFSFWDKDA---RTKLKTSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             -------EEEecCCceEEEecchh---hhhhhccCcCCCccceeEecCCCC
Confidence                   45556699999999654   334444333333334444555554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.79  E-value=2.7e-17  Score=167.81  Aligned_cols=199  Identities=13%  Similarity=0.213  Sum_probs=162.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      .+|+.+++++|+.|..-+||++.++....++.+ |++.|.++.|+.+|. +|+||+-+|.|+||+..++.. ...+..-.
T Consensus        72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~-~~~~~~e~  148 (399)
T KOG0296|consen   72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGE-QWKLDQEV  148 (399)
T ss_pred             eCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCce-EEEecCCCccEEEEEcccCce-EEEeeccc
Confidence            578899999999999999999999999889987 888899999999998 999999999999999998874 33444455


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|.-+.|+|.+..|+.|+.||.|.+|.+.++...+++ +|..++++=.|.|+|+.++++..||+|++||+.+.. ++..
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~  227 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHK  227 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc-eeEE
Confidence            66888999999999999999999999999997666666 799999999999999999999999999999999984 4444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW  206 (568)
                      +.. .......++.++..+..++.| ......+++..+....|.+.
T Consensus       228 ~~~-~e~~~~~~~~~~~~~~~~~~g-~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  228 ITQ-AEGLELPCISLNLAGSTLTKG-NSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             ecc-cccCcCCccccccccceeEec-cCCccEEEEccccceEEEec
Confidence            442 224567888888888888777 33333344444433333333

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.3e-17  Score=167.16  Aligned_cols=239  Identities=15%  Similarity=0.175  Sum_probs=172.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+|.++.|+++++||.+++||+........++  |..++.+++|.++.  .+++|+-||.|+++|+.++.  ...+-.|.
T Consensus        21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~--~~~igth~   94 (323)
T KOG1036|consen   21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN--EDQIGTHD   94 (323)
T ss_pred             EcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCc--ceeeccCC
Confidence            67888889999999999999998877666676  77889999999864  49999999999999999887  56788899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      ..|.||.+.+....+++|+.|++|++||.+....+..+.....|.++...  ++.|++|+.|..|.+||+|+...+.+. 
T Consensus        95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~-  171 (323)
T KOG1036|consen   95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR-  171 (323)
T ss_pred             CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-
Confidence            99999999998889999999999999999987777677666788888776  789999999999999999986544311 


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEecc-------------------------------------------CCCCeEEEEec
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETT-------------------------------------------CKAETALLGGA  198 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~-------------------------------------------ssd~~~Lls~s  198 (568)
                      +...-.-.++++++-|++.-.+.++-                                           ..-...+++++
T Consensus       172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG  251 (323)
T KOG1036|consen  172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG  251 (323)
T ss_pred             ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence            11122233444444443222111100                                           00122467778


Q ss_pred             CCCcEEcCCCCCCCccccccccccccCCCCCcccCCCCCCccCccCCCCCCCCc
Q 008356          199 VGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQ  252 (568)
Q Consensus       199 ~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~  252 (568)
                      .||.|.+||+.+......+   +.-+.+..++..+-.|...++......+..+.
T Consensus       252 sDG~V~~Wd~~~rKrl~q~---~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~  302 (323)
T KOG1036|consen  252 SDGIVNIWDLFNRKRLKQL---AKYETSISSLSFSMDGSLLAIASSYQYERADT  302 (323)
T ss_pred             CCceEEEccCcchhhhhhc---cCCCCceEEEEeccCCCeEEEEechhhhcCCC
Confidence            8999999998775543322   22233455666777777666665544444433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.78  E-value=3.5e-18  Score=167.98  Aligned_cols=200  Identities=18%  Similarity=0.306  Sum_probs=162.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEE--eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-----
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-----   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-----   73 (568)
                      +|+++|..|++|+.|+++.||+++..+....  .++ |.+.|..++|.|....+|++++.|.+|++||++..++.     
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~  105 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET  105 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec
Confidence            5899999999999999999999987765543  344 55566778999888779999999999999997654321     


Q ss_pred             ----------------------------------------------------------------------------eEEe
Q 008356           74 ----------------------------------------------------------------------------VSWL   77 (568)
Q Consensus        74 ----------------------------------------------------------------------------v~~l   77 (568)
                                                                                                  +..+
T Consensus       106 ~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si  185 (313)
T KOG1407|consen  106 KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI  185 (313)
T ss_pred             cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence                                                                                        1126


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      +.|...+.||.|+|+|++|++|+.|..+.+||+..--+++.+ .++-+|+.+.|+.+|++||+|++|..|-|=+++++.+
T Consensus       186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence            678888999999999999999999999999999998888888 6899999999999999999999999999999999965


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      ..++    .+.++...|+|+|....|+.+.+..++.   ..-..+.|++|-+
T Consensus       266 ~~eI----~~~~~t~tVAWHPk~~LLAyA~ddk~~d---~~reag~vKiFG~  310 (313)
T KOG1407|consen  266 VWEI----PCEGPTFTVAWHPKRPLLAYACDDKDGD---SNREAGTVKIFGL  310 (313)
T ss_pred             EEEe----eccCCceeEEecCCCceeeEEecCCCCc---cccccceeEEecC
Confidence            4333    4778999999999988887664433331   1122466777643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.78  E-value=1.3e-18  Score=170.12  Aligned_cols=195  Identities=15%  Similarity=0.195  Sum_probs=162.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+.|.++|++|+.+..++|||++..+ ...++.+ |.+.|+.+.|+...+ .|++..+|++||+||.+++.. ++.+ .
T Consensus       107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~-v~sL-~  182 (334)
T KOG0278|consen  107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTE-VQSL-E  182 (334)
T ss_pred             EecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcE-EEEE-e
Confidence            588899999999999999999998665 4556776 778889999998876 688889999999999999873 3333 3


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...+|+++.++++|++|.++ ..+.|.+||..+-.++..+.....|.+..++|+..++++|++|..++.||..++.....
T Consensus       183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence            55679999999999876655 45679999999999888888888999999999999999999999999999999864333


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      .  ..+|.++|.|+.|+|+|.            .+.+++.||+|++|...+..+.
T Consensus       262 ~--nkgh~gpVhcVrFSPdGE------------~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  262 Y--NKGHFGPVHCVRFSPDGE------------LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             c--ccCCCCceEEEEECCCCc------------eeeccCCCceEEEEEecCCCch
Confidence            2  238999999999999654            4555678999999988765543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.78  E-value=4.5e-18  Score=188.37  Aligned_cols=190  Identities=19%  Similarity=0.300  Sum_probs=163.5

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      -+++|++|+.|.+++|||..+|++...+.+ |...+.++...+.   ++++|+.|.+|++|+++++.. +..+.+|..+|
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V  334 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPV  334 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEccCc---eEeeccCCceEEEEeccCcce-EEEeccccccE
Confidence            367899999999999999999999999997 7888888876643   788899999999999998873 67777899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      +++..+  +.++++|+.|++|++||+++++++..+ +|..+|.++.+... .+++.|+.|+.|++||+++..+++..+. 
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-  410 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-  410 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-
Confidence            999998  899999999999999999999999888 79999999988765 8999999999999999999844555565 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                       +|..-|..+.+.              ..+|++++.|+.|++||.........+.
T Consensus       411 -~h~~~v~~l~~~--------------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  411 -GHTSLVSSLLLR--------------DNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             -CCcccccccccc--------------cceeEeccccccEEEeecccCceeeeec
Confidence             788878666543              3467888889999999998877665543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.78  E-value=8.6e-19  Score=184.06  Aligned_cols=188  Identities=18%  Similarity=0.212  Sum_probs=161.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +.|||+.|++|+.-.+|.|||+.....  ..++.. ....+.+++.+||.+ +.+++..||.|.|||+.+.. +++.+.+
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~VrqfqG  549 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQG  549 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeecccC
Confidence            468999999999999999999976543  333332 345678899999997 89999999999999998876 6899999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |.+.+.||.+++||..|.+|+-|.+|+.||+++++.+........|.++.++|++.+|++|.+++.|.|.......+   
T Consensus       550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---  626 (705)
T KOG0639|consen  550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---  626 (705)
T ss_pred             CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc---
Confidence            99999999999999999999999999999999999888888889999999999999999999999999998877632   


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                       +..+.|...|.++.|.+.|+|+++.            +.|+.+..|..
T Consensus       627 -yqlhlheScVLSlKFa~cGkwfvSt------------GkDnlLnawrt  662 (705)
T KOG0639|consen  627 -YQLHLHESCVLSLKFAYCGKWFVST------------GKDNLLNAWRT  662 (705)
T ss_pred             -eeecccccEEEEEEecccCceeeec------------CchhhhhhccC
Confidence             3344789999999999999887765            34666666654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.8e-18  Score=189.39  Aligned_cols=195  Identities=19%  Similarity=0.299  Sum_probs=166.0

Q ss_pred             ccCC-CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCK-DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      ||+- -.+|++|+.||.|++||++..+-...+.+ ..+.|++|+|+|...+.|+++.+.|.|++||++........+.+|
T Consensus       141 fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH  219 (839)
T KOG0269|consen  141 FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH  219 (839)
T ss_pred             eccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence            4443 36899999999999999998888888876 778899999999888899999999999999998776567788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEeecCCCeEEEEEecCCC-EEEEEE--cCCeEEEEECCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCITYEAPFSSLAFIDDDW-ILTAGT--SNGRVVFYDIRGKP  155 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~~h~~~ItsLafsPdg~-~LasGs--~DG~V~VWDlrt~~  155 (568)
                      .++|.|+.|+|++.+|++||.|+.|+|||..+.+  .+.++....++.+++|.|... .|++++  .|-.|+|||++...
T Consensus       220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            9999999999999999999999999999998654  456667889999999999754 455544  47789999999988


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      -|..++.  .|...++.++|..           .+...+++++.|+.|....++.
T Consensus       300 IP~~t~~--eH~~~vt~i~W~~-----------~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  300 IPYATFL--EHTDSVTGIAWDS-----------GDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ccceeee--ccCccccceeccC-----------CCceeeEeecCccHHHHhhhhc
Confidence            8888877  7999999999975           2667788888899888766553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.78  E-value=5.2e-19  Score=179.06  Aligned_cols=186  Identities=19%  Similarity=0.301  Sum_probs=156.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      ++.++++++.|..|+|||+.....   ...+.+ |...|+.+.|+.  + ++++++.|.+|++|++.+.+. ++.+.+|.
T Consensus       286 ~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~ef-vRtl~gHk  360 (499)
T KOG0281|consen  286 SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTCEF-VRTLNGHK  360 (499)
T ss_pred             eCCEEEEecCCceeEEEeccCchHHHHHHHHhh-hhhheeeecccc--c-eEEEecCCceEEEEeccceee-ehhhhccc
Confidence            356899999999999999976552   234444 778899998874  3 899999999999999999884 88899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce--
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL--  158 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v--  158 (568)
                      ..|.|+.+.  ++++++|+.|.+|++||+..|.+++.+ +|+.-|.|+.|+  .+.+++|..||+|+|||+.....+.  
T Consensus       361 RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~  436 (499)
T KOG0281|consen  361 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAP  436 (499)
T ss_pred             ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccc
Confidence            999998886  899999999999999999999999888 799999999997  6789999999999999998765441  


Q ss_pred             ----EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          159 ----TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       159 ----~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                          .......|.+.|..+.|.              +..+++++.|.+|.+||...+.+
T Consensus       437 ~~~~Cl~~lv~hsgRVFrLQFD--------------~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  437 ASTLCLRTLVEHSGRVFRLQFD--------------EFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ccchHHHhhhhccceeEEEeec--------------ceEEEeccCCCeEEEEEcCCCCc
Confidence                112223688899999885              45788888899999999877554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=5.7e-18  Score=164.44  Aligned_cols=255  Identities=19%  Similarity=0.254  Sum_probs=182.3

Q ss_pred             eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356           29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (568)
Q Consensus        29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IW  108 (568)
                      ...+.. +++.|+++.|+-+|+ +.++++.|.+|++|+...+. .++...+|...|.+++.+.|...|++|+.|+.|.+|
T Consensus        10 ~~~l~~-~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~-liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   10 LSILDC-AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGA-LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             ceeecc-cccceEEEEEccCCC-EEEEcCCCceEEeecccccc-eeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            344554 778999999999998 89999999999999997776 488899999999999999999999999999999999


Q ss_pred             ECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          109 DPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       109 Dlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~-~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      |+.+|+.++.+ +|.+.|+.++|+.+...+++|+.|..|++||.|.. ..|++++.  .....|.++....         
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild--ea~D~V~Si~v~~---------  155 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD--EAKDGVSSIDVAE---------  155 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh--hhcCceeEEEecc---------
Confidence            99999999988 79999999999999999999999999999999974 35667666  4567788887654         


Q ss_pred             cCCCCeEEEEecCCCcEEcCCCCCCCccccccccccc-----cCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCC
Q 008356          187 TCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV-----SGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGP  261 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~-----~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~  261 (568)
                           ..+++++.||+++.||+|......-+. +.++     +.......+++.++......-.+++-    -....|..
T Consensus       156 -----heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl----L~sYkGhk  225 (307)
T KOG0316|consen  156 -----HEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL----LKSYKGHK  225 (307)
T ss_pred             -----cEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHH----HHHhcccc
Confidence                 468888899999999999765433221 1111     11111111211111111110000000    00001111


Q ss_pred             ceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCCCCC
Q 008356          262 LARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKP  315 (568)
Q Consensus       262 ~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~~~~  315 (568)
                      ....+. +--+ ...|.-||+--||      -.+++||--+++.+..|++..++
T Consensus       226 n~eykl-dc~l-~qsdthV~sgSED------G~Vy~wdLvd~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  226 NMEYKL-DCCL-NQSDTHVFSGSED------GKVYFWDLVDETQISKLSVVSTV  271 (307)
T ss_pred             cceeee-eeee-cccceeEEeccCC------ceEEEEEeccceeeeeeccCCce
Confidence            111110 0001 1234567888888      66999999999999999988887

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.1e-17  Score=185.28  Aligned_cols=194  Identities=12%  Similarity=0.161  Sum_probs=155.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+. .++|++++.|.+|+||++...++++.|.  |.+.|+||+|+|.++++|++|+-||.|+||++...+  +..+..-.
T Consensus       377 WSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~  451 (712)
T KOG0283|consen  377 WSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLR  451 (712)
T ss_pred             ccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhh
Confidence            553 5689999999999999999999999998  899999999999988899999999999999998876  44555555


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsPd-g~~LasGs~DG~V~VWDl  151 (568)
                      .-|++++|.|||+..+.|+.+|.+++|+++..+.+..+.         ....|+.+.|.|. ...|++.+.|.+|+|||.
T Consensus       452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            889999999999999999999999999998876654331         1237999999984 446888899999999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +.. .++..++.+.....-....|..+|++|++            ++.|..|++|+...+..
T Consensus       532 ~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs------------~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  532 RDK-DLVHKFKGFRNTSSQISASFSSDGKHIVS------------ASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             cch-hhhhhhcccccCCcceeeeEccCCCEEEE------------eecCceEEEEeCCCCcc
Confidence            775 34455553333333445677776665544            46799999999866553

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.4e-17  Score=167.29  Aligned_cols=193  Identities=18%  Similarity=0.210  Sum_probs=153.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      ..++.++|+|+.|-+|+|||+.....+..+.. |.+.|+++.|.++-. ..|++|++||.|.+|+...-. .+..+++|.
T Consensus        50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~  127 (362)
T KOG0294|consen   50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHK  127 (362)
T ss_pred             EecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccc
Confidence            35789999999999999999988888877775 788999999998752 248899999999999998775 588999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---------------------------------------
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---------------------------------------  122 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---------------------------------------  122 (568)
                      +.|+.++.+|.+++-++.+.|+.+++||+-+|+.-.+....                                       
T Consensus       128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~  207 (362)
T KOG0294|consen  128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN  207 (362)
T ss_pred             cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc
Confidence            99999999999999999999999999999776543322111                                       


Q ss_pred             -CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356          123 -APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (568)
Q Consensus       123 -~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg  201 (568)
                       ..+.|+.|. ++.+|++|..|+.|.+||.+.. .+...+.  +|...|..+.+--          .....+|++.+.||
T Consensus       208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~--AH~~RVK~i~~~~----------~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFL--AHENRVKDIASYT----------NPEHEYLVTASSDG  273 (362)
T ss_pred             cccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeee--cchhheeeeEEEe----------cCCceEEEEeccCc
Confidence             123333333 4567888888999999998874 3444444  7999999988543          23557788888899


Q ss_pred             cEEcCCCCCC
Q 008356          202 SILMPDPLPS  211 (568)
Q Consensus       202 ~V~VWDlr~~  211 (568)
                      .|+|||++.-
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999999764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.4e-18  Score=187.19  Aligned_cols=197  Identities=18%  Similarity=0.258  Sum_probs=161.8

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 008356            4 CKDEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW   76 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~~   76 (568)
                      |++++|++||.||.|++|+.....      .+..++ +|.+.|+++..+.+++ .|++++.|-+|++|+..... ....+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence            567889999999999999986332      244555 4888999999999987 79999999999999996552 23667


Q ss_pred             eccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc--eeeEe----------ecCCCeEEEEEecCCCEEEEEEcC
Q 008356           77 LKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRR--PSSCI----------TYEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        77 l~~H~~~Vtslaf-sPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~----------~h~~~ItsLafsPdg~~LasGs~D  143 (568)
                      +..|.+.|.|+++ -++..++++||.|+.|.+||+.++.  .+..+          ++...|.+++.++.|..|+.|+.+
T Consensus       113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte  192 (735)
T KOG0308|consen  113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE  192 (735)
T ss_pred             hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence            8899999999999 6788999999999999999999772  22221          467789999999999999999999


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      +.+++||+++.++..+ ++  +|..-|..+..+.+|            ..+++++.|++|++||++-..+..++
T Consensus       193 k~lr~wDprt~~kimk-Lr--GHTdNVr~ll~~dDG------------t~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMK-LR--GHTDNVRVLLVNDDG------------TRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             cceEEeccccccceee-ee--ccccceEEEEEcCCC------------CeEeecCCCceEEeeeccccceeeeE
Confidence            9999999999864333 33  899999999988854            45666677999999999877665554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=1.8e-18  Score=176.13  Aligned_cols=197  Identities=19%  Similarity=0.320  Sum_probs=159.7

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------------
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---------------   71 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---------------   71 (568)
                      ..+++|+.||.|+|||+.+..+...+++ |.+.|+.|++.. +  .++++++|.+|+.|.++..-               
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh  155 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH  155 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc-c--ceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence            4578999999999999999999999997 888999999987 2  58999999999999743210               


Q ss_pred             -----------c-----------eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEE
Q 008356           72 -----------P-----------KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSL  128 (568)
Q Consensus        72 -----------~-----------~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsL  128 (568)
                                 .           ++..+.-....|.++.|+| ....|++|+.|+.|.+||+++..++..+-....-+.|
T Consensus       156 ~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I  235 (433)
T KOG0268|consen  156 HRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI  235 (433)
T ss_pred             ccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence                       0           0111222334578888899 6677888889999999999999999888888888999


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec----------------------
Q 008356          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET----------------------  186 (568)
Q Consensus       129 afsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s----------------------  186 (568)
                      +|+|++..+++|.+|..++.||++....++.+..  +|...|.+++|+|.|+-+++++                      
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk  313 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK  313 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence            9999988999999999999999999888888887  8999999999999988777654                      


Q ss_pred             ---------cCCCCeEEEEecCCCcEEcCCCC
Q 008356          187 ---------TCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       187 ---------~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                               ++.|..++++|+.|+.|++|.-.
T Consensus       314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence                     23355566777777777777543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=2.8e-17  Score=172.71  Aligned_cols=177  Identities=20%  Similarity=0.257  Sum_probs=148.1

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |+|++ ..|++|++|+.+++||+.+.....++.+ |.+.|+|.+|+|..++++++|+.||.|++||.+.... ......|
T Consensus       118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnh  195 (487)
T KOG0310|consen  118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNH  195 (487)
T ss_pred             ecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecC
Confidence            66765 5677888899999999988876557776 8899999999999999999999999999999987753 3344569


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ..+|..+.+.|.|..|++++.. .|++||+.+|. .+... .|...|+|+++..++..|++|+-|+.|++||+.+.    
T Consensus       196 g~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----  270 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----  270 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----
Confidence            9999999999999999998855 59999999654 44444 59999999999999999999999999999997655    


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ++.....-.++|.+++.+|+++.++.+
T Consensus       271 Kvv~s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  271 KVVHSWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEEEeeecccceeeEEecCCCceEEEe
Confidence            445555678999999999976666555

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=3.5e-18  Score=171.44  Aligned_cols=189  Identities=14%  Similarity=0.244  Sum_probs=166.3

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC------CCC-----------
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT------TGR-----------   70 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl------~t~-----------   70 (568)
                      .+.+++.|.+.+||.+++++++..+.+ |.+.|++|+|++.+. ++++++.|++.+||..      ..+           
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecc-cccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            567888999999999999999999998 778899999999887 9999999999999972      100           


Q ss_pred             ----------------------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEE
Q 008356           71 ----------------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS  127 (568)
Q Consensus        71 ----------------------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~Its  127 (568)
                                            ..++..+.+|...|.+..|...++.+++++.|++-.+||+++++++..+ +|+...+.
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH  319 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH  319 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence                                  0124457889999999999999999999999999999999999999888 79999999


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       128 LafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      ++-+|..+++++.+.|-+.++||.+..-+.+.+++  +|...|+++.|..+             ..+++++.|++|++||
T Consensus       320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtdtVTS~vF~~d-------------d~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTDTVTSVVFNTD-------------DRVVSGSDDRTVKVWD  384 (481)
T ss_pred             cccCCcceEEEEeccCceeEeccchhhcceeeeec--ccccceeEEEEecC-------------CceeecCCCceEEEee
Confidence            99999999999999999999999997766667777  99999999999874             3467888899999999


Q ss_pred             CCCCCc
Q 008356          208 PLPSVT  213 (568)
Q Consensus       208 lr~~~~  213 (568)
                      ++++..
T Consensus       385 LrNMRs  390 (481)
T KOG0300|consen  385 LRNMRS  390 (481)
T ss_pred             eccccC
Confidence            998764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=3.7e-19  Score=193.46  Aligned_cols=194  Identities=19%  Similarity=0.235  Sum_probs=169.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      .++.+++|+.|-.+-+|.+.....+..+.+ |...|.+|.|+.... +|++|..+|+|++||+...+ .++.+.+|...+
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~  115 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNI  115 (825)
T ss_pred             cceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhh-hhhhhhccccCc
Confidence            357788999999999999887777777886 888999999999987 89999999999999998776 478999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      ..++|+|-+.+++.|+.|..+++||++...+...+ .|...+.+++|.|+|++++.|++|..|+|||+..++ ....+. 
T Consensus       116 ~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~-  193 (825)
T KOG0267|consen  116 TSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFK-  193 (825)
T ss_pred             ceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccc-
Confidence            99999999999999999999999999987787777 588889999999999999999999999999998873 334444 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                       .|.+.|..+.|+|.            +.++..++.|+.|++||++.|....+
T Consensus       194 -~~e~~v~sle~hp~------------e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  194 -SHEGKVQSLEFHPL------------EVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             -cccccccccccCch------------hhhhccCCCCceeeeeccceeEEeec
Confidence             69999999999994            45566667799999999998775443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.76  E-value=2.6e-17  Score=168.65  Aligned_cols=189  Identities=19%  Similarity=0.299  Sum_probs=153.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCC-------------------------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEe
Q 008356            3 NCKDEHLASISLSGDLILHNLASG-------------------------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAG   57 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg-------------------------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs   57 (568)
                      .++|.++++|+.|..|.||+.++.                         ..+..+.+ |.+.|.++.|++.+  .+++++
T Consensus       202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w~d~~--v~yS~S  278 (423)
T KOG0313|consen  202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVWSDAT--VIYSVS  278 (423)
T ss_pred             cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEEcCCC--ceEeec
Confidence            578999999999999999993210                         12334454 88899999999844  699999


Q ss_pred             CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ee--eEeecCCCeEEEEEecC
Q 008356           58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PS--SCITYEAPFSSLAFIDD  133 (568)
Q Consensus        58 ~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v--~~~~h~~~ItsLafsPd  133 (568)
                      +|.+|+.||+.++.. ...+ .....++|++++|..++|++|+.|..|++||.|++.  .+  ..++|...|.++.|+|.
T Consensus       279 wDHTIk~WDletg~~-~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  279 WDHTIKVWDLETGGL-KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             ccceEEEEEeecccc-eeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence            999999999988874 3333 345669999999999999999999999999999864  22  23379999999999995


Q ss_pred             -CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          134 -DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       134 -g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                       ...|++|+.|+++++||+|....++..+.  +|...|.++.|..             +..+++|+.|.+|+++.-.++
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~~-------------~~~IvSGGaD~~l~i~~~~~~  420 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWNE-------------GGLIVSGGADNKLRIFKGSPI  420 (423)
T ss_pred             CceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEeccC-------------CceEEeccCcceEEEeccccc
Confidence             56788899999999999999877777666  8999999999975             346777788999999875543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=2.3e-17  Score=180.15  Aligned_cols=191  Identities=15%  Similarity=0.153  Sum_probs=161.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECC---C--CceeEEeeCC------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLA---S--GAKAAELKDP------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~---t--g~~v~~l~~~------h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      .+||++.+++|+.|.+|++||..   .  +...+.+.-+      -.+.|.|+.++||++ +|+.+--|.+|+||-+++.
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl  540 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL  540 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce
Confidence            47999999999999999999964   1  2211112211      246788999999998 8999999999999999998


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                      +. ...+.+|.-+|.|++.+||+++|+||+.|+.|++|-+.-|.+-..+ .|++.|.++.|.|....+.+++.|+.|+-|
T Consensus       541 KF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  541 KF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             ee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence            73 6679999999999999999999999999999999999998877655 899999999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |-.... .+..+.  +|...|+|++..|+|.+++++            +.|..|++|.-.
T Consensus       620 Dg~kFe-~iq~L~--~H~~ev~cLav~~~G~~vvs~------------shD~sIRlwE~t  664 (888)
T KOG0306|consen  620 DGEKFE-EIQKLD--GHHSEVWCLAVSPNGSFVVSS------------SHDKSIRLWERT  664 (888)
T ss_pred             chhhhh-hheeec--cchheeeeeEEcCCCCeEEec------------cCCceeEeeecc
Confidence            988764 334444  899999999999987776665            558899999754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=2.6e-17  Score=171.33  Aligned_cols=194  Identities=16%  Similarity=0.253  Sum_probs=159.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCcee---EEe-----------------eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356            5 KDEHLASISLSGDLILHNLASGAKA---AEL-----------------KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL   64 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v---~~l-----------------~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~V   64 (568)
                      .|+++|.|..|..|.|||+.--..+   ..+                 ..+|.+.|-.+.|+.+-+++|++|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4789999999999999998522110   000                 11466777789999999999999999999999


Q ss_pred             EECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEeecCCCeEEEEEecC-CCEEEEEE
Q 008356           65 WDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDD-DWILTAGT  141 (568)
Q Consensus        65 WDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~~h~~~ItsLafsPd-g~~LasGs  141 (568)
                      ||+.++++ ...+..|...|.+++|+| ...+|++|+.|++|.+.|+|... .-..+...+.|-.++|+|. ...++++.
T Consensus       271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            99999986 566778999999999999 78899999999999999999533 3344567889999999996 46777888


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .||+|+-+|+|...+++..++  .|.+.|.+|+++..-           ..++.+++.|+.|++|++..-.
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~~-----------p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQT-----------PGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             CCceEEeeecCCCCCceeEEE--eccCCcceEEecCCC-----------CcceeeccccceEEEEeecCCC
Confidence            999999999999888887777  799999999998853           3356667789999999976533

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.75  E-value=1.8e-17  Score=173.05  Aligned_cols=194  Identities=17%  Similarity=0.217  Sum_probs=159.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |.++||++||+|+.|..|.||+..+.+.+..+++ |.+.|.+++|-.... -+++++.|+.|++|+++... .+..+.+|
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s-~vetlyGH  285 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLS-YVETLYGH  285 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCcc-ceeeeecCCceEEEehhHhH-HHHHHhCC
Confidence            4689999999999999999999999999999887 778889999986554 79999999999999998876 47789999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ...|.+|......+.+.+|+.|+++++|++.....+...++.+.+.|++|-.+ ..+++|+.||.|.+|++...+ |+.+
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk-plf~  363 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK-PLFT  363 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC-ceeE
Confidence            99999999988888888888999999999976665555578889999999865 678999999999999998764 4433


Q ss_pred             Eee-c---------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          161 LRA-C---------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       161 l~~-~---------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .+. +         .+..+|++++..|            ...++++++.+|+|++|-+...
T Consensus       364 ~~~AHgv~~~~~~~~~~~Witsla~i~------------~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  364 SRLAHGVIPELDPVNGNFWITSLAVIP------------GSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eeccccccCCccccccccceeeeEecc------------cCceEEecCCCCceEEEEecCC
Confidence            321 1         1222677777766            4456666677999999987654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.75  E-value=5.6e-17  Score=168.41  Aligned_cols=180  Identities=14%  Similarity=0.232  Sum_probs=152.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H   80 (568)
                      |+++...+++++.|-.|+||............. |++.|+.+..+|.|+ +|++++.|++..+.|++.+........ ..
T Consensus       269 ~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~-h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s  346 (506)
T KOG0289|consen  269 FHKDLDTVITASADEIIRVWSVPLSSEPTSSRP-HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETS  346 (506)
T ss_pred             eccchhheeecCCcceEEeeccccccCcccccc-ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccc
Confidence            678888999999999999999876665555554 888999999999999 899999999999999998875433222 23


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      .-.+++.+|+|||.+|.+|..|+.|++||+..+..+..| +|.++|..++|+.+|.||+++..|+.|++||+|..+ .++
T Consensus       347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-n~k  425 (506)
T KOG0289|consen  347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-NFK  425 (506)
T ss_pred             cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-ccc
Confidence            345899999999999999999999999999999888777 699999999999999999999999999999999874 334


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .+.. .....|.+++|++.|.+|+.+
T Consensus       426 t~~l-~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  426 TIQL-DEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             eeec-cccccceeEEEcCCCCeEEee
Confidence            4432 233479999999998888776

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2e-16  Score=152.86  Aligned_cols=194  Identities=14%  Similarity=0.182  Sum_probs=146.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC------CC--------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA------SG--------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~------tg--------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD   66 (568)
                      +|+|.|.+.++|+...+++|....      .+        ..++.-..||++.|.|.+|+|+|+ +|++|+.|.+|++..
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~  117 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLP  117 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEe
Confidence            589999999999999998886432      11        122333457899999999999998 999999999999987


Q ss_pred             CCCCCce----eEEeccCCCCeEEEEEcC----------------------------------------------CCCEE
Q 008356           67 TTGRSPK----VSWLKQHSAPTAGISFSS----------------------------------------------DDKII   96 (568)
Q Consensus        67 l~t~~~~----v~~l~~H~~~VtslafsP----------------------------------------------dg~~L   96 (568)
                      ++...+.    ...+.-|.+.|..++|..                                              ++-.|
T Consensus       118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~  197 (350)
T KOG0641|consen  118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMF  197 (350)
T ss_pred             cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEE
Confidence            6432211    112333444444444321                                              35567


Q ss_pred             EEEeCCCeEEEEECCCCceeeEee---c-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC
Q 008356           97 ASVGLDKKLYTYDPGSRRPSSCIT---Y-----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        97 aSgs~DGtV~IWDlrt~~~v~~~~---h-----~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      ++|+.|.+|++||++-..++.++.   |     ...|.+++..|.|++|++|..|....+||++.+. +++.+.  .|..
T Consensus       198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~--phsa  274 (350)
T KOG0641|consen  198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFH--PHSA  274 (350)
T ss_pred             EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeC--CCcc
Confidence            789999999999999988888773   2     2468999999999999999999999999999883 444444  8999


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .|+++.|+|.            ..++++++.|..|++-|+.-
T Consensus       275 dir~vrfsp~------------a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  275 DIRCVRFSPG------------AHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             ceeEEEeCCC------------ceEEEEecccceEEEeeccc
Confidence            9999999994            45566667899999988753

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=6.2e-17  Score=174.70  Aligned_cols=194  Identities=20%  Similarity=0.264  Sum_probs=160.7

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 008356            3 NCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSP-------   72 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Laf-spdg~~lLaTgs~DGtV~VWDl~t~~~-------   72 (568)
                      ..+++.|++++.|-+|++|+...+.  ++..+.. |.+.|.|+++ .++.. ++++|+-|+.|+|||+..+..       
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n  159 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN  159 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhhc-ccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc
Confidence            4577899999999999999998763  4555654 8899999999 55554 899999999999999986521       


Q ss_pred             --eeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           73 --KVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        73 --~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                        ....+. ++...|++++.++.+..|++|+..+.|++||.++++.+..+ +|...|.++..++||..+++++.||+|++
T Consensus       160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl  239 (735)
T KOG0308|consen  160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL  239 (735)
T ss_pred             ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence              122333 78899999999999999999999999999999998766554 89999999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ||+..+.+ +..+.  .|...|+++..+|+            -..+++|+.|+.|..-|++.+..
T Consensus       240 WdLgqQrC-l~T~~--vH~e~VWaL~~~~s------------f~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  240 WDLGQQRC-LATYI--VHKEGVWALQSSPS------------FTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             eeccccce-eeeEE--eccCceEEEeeCCC------------cceEEecCCCCcEEecccCCchh
Confidence            99998854 44444  68888999988774            34566777799999999988653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=3.2e-17  Score=159.97  Aligned_cols=193  Identities=15%  Similarity=0.224  Sum_probs=156.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCC---ceeEEeeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC-ceeEEec
Q 008356            5 KDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK   78 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg---~~v~~l~~~h~~~Vs~Lafsp--dg~~lLaTgs~DGtV~VWDl~t~~-~~v~~l~   78 (568)
                      -|++||+++.|++|+||.++..   +++.++.+ |.++|..++|.+  .|. +|++++.||.|.||.-.++. .+.....
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e~~   99 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYEHA   99 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhhhh
Confidence            4789999999999999998753   46778887 788889999987  676 99999999999999987664 2244566


Q ss_pred             cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-c-ee--eEeecCCCeEEEEEecC---C-----------CEEE
Q 008356           79 QHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-R-PS--SCITYEAPFSSLAFIDD---D-----------WILT  138 (568)
Q Consensus        79 ~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~-~-~v--~~~~h~~~ItsLafsPd---g-----------~~La  138 (568)
                      .|...|++++|.|  .|-.|++++.||.|.|.+.+.. . ..  ....|.-.|++++|.|-   |           +.|+
T Consensus       100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv  179 (299)
T KOG1332|consen  100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV  179 (299)
T ss_pred             hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence            7999999999999  5678899999999999998764 2 11  22368889999999985   4           6799


Q ss_pred             EEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          139 AGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +|+.|..|+||+.....-.. ..+.  +|.+.|+.++|.|.-        ......+++++.||.|.||-.+
T Consensus       180 SgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~--------gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  180 SGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSV--------GLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhcccc--------CCCceeeEEecCCCcEEEEEec
Confidence            99999999999998752111 2244  899999999999963        2355678999999999999766

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.73  E-value=1.1e-16  Score=181.05  Aligned_cols=180  Identities=12%  Similarity=0.236  Sum_probs=143.0

Q ss_pred             ccCCCCEEEEEE--CCCcEEEEECCC------------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356            2 YNCKDEHLASIS--LSGDLILHNLAS------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT   67 (568)
Q Consensus         2 fSpdG~~LasGs--~DG~V~VWDl~t------------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl   67 (568)
                      .+|||..+++|+  .||.++||+.+.            .+.++.+.. |.+.|+|+.|++||+ +||+|++|+.|.||+.
T Consensus        21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSDDRLVMIWER   98 (942)
T ss_pred             ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccCcceEEEeee
Confidence            479999999999  899999998642            223445554 788999999999998 8999999999999998


Q ss_pred             CC-----------CC------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEE
Q 008356           68 TG-----------RS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA  129 (568)
Q Consensus        68 ~t-----------~~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLa  129 (568)
                      ..           +.      ..+..+.+|...|.+++|+|++.+|++++.|++|.+||.++.+.+..+ .|...|..+.
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs  178 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS  178 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence            62           00      125568899999999999999999999999999999999999887777 7999999999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEEE
Q 008356          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~----~h~~~VtsLafspdg~~Las  184 (568)
                      |+|-|+|||+-+.|++|+||++..- ...+.+...    ....-.+.+.|+|||++|++
T Consensus       179 ~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las  236 (942)
T KOG0973|consen  179 WDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS  236 (942)
T ss_pred             ECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence            9999999999999999999996642 112222110    11223556666666666653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.73  E-value=1e-16  Score=175.09  Aligned_cols=200  Identities=16%  Similarity=0.189  Sum_probs=166.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---C--C-CceeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---G--R-SPKVS   75 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---t--~-~~~v~   75 (568)
                      |-|.++++++|...|.+.|||+.....+..+++ |.+.|..++..|++. .+++|+.|.+|++||..   .  + +.++.
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~l  497 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRA-HDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVL  497 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehhhhhhhhhc-cccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceee
Confidence            678889999999999999999999888888885 889999999999998 79999999999999972   1  1 11111


Q ss_pred             -----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eEeecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           76 -----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        76 -----~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v-~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                           ..-.-...|.|+.++||+++|+.+--|.+|++|-+.+-+.. ..++|.=+|.|+.++||++.+++|+.|..|+||
T Consensus       498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence                 11223567999999999999999999999999999987654 444899999999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                      -++-+.+- +.+  ++|...|.++.|.|.            ...+++++.|+.|+.||-.+|.....+.
T Consensus       578 GLdFGDCH-KS~--fAHdDSvm~V~F~P~------------~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  578 GLDFGDCH-KSF--FAHDDSVMSVQFLPK------------THLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             ccccchhh-hhh--hcccCceeEEEEccc------------ceeEEEecCcceEEeechhhhhhheeec
Confidence            99877542 323  379999999999994            4456667889999999999888765553

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.2e-16  Score=172.65  Aligned_cols=195  Identities=16%  Similarity=0.260  Sum_probs=157.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H   80 (568)
                      |+ ..+.|++|. ...|++|+..+++....... +.+.|+++.|+++|. +|++|..+|.|.|||....+. +..+.. |
T Consensus       185 Ws-s~n~laVal-g~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~-~~~~~~~h  259 (484)
T KOG0305|consen  185 WS-SANVLAVAL-GQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK-TRTLRGSH  259 (484)
T ss_pred             cc-cCCeEEEEe-cceEEEEecCCCceEEeEec-CCCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc-cccccCCc
Confidence            45 345666664 45799999998886655554 378899999999998 799999999999999987763 666777 9


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ...|.+++|+  ...+.+|+.|+.|..+|++..+.... + .|...|..++|++|+++||+|+.|+.|.|||...... .
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-~  336 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-K  336 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-c
Confidence            9999999999  78899999999999999998765544 3 6999999999999999999999999999999966543 3


Q ss_pred             EEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~-~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      ..+.  .|.+.|..++|+|..+ .||+++          |+.|++|++||+........
T Consensus       337 ~~~~--~H~aAVKA~awcP~q~~lLAsGG----------Gs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  337 FTFT--EHTAAVKALAWCPWQSGLLATGG----------GSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             EEEe--ccceeeeEeeeCCCccCceEEcC----------CCcccEEEEEEcCCCcEecc
Confidence            3333  7999999999999643 334442          24599999999885544333

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.73  E-value=6.1e-17  Score=165.78  Aligned_cols=176  Identities=18%  Similarity=0.334  Sum_probs=139.3

Q ss_pred             ccCC-CCEEEEEECCCcEEEEECCCCcee---EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 008356            2 YNCK-DEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW   76 (568)
Q Consensus         2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v---~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~~   76 (568)
                      |+|- ...|++|..-+.|++|...++.-.   ..+.+ |...|.+++|+|..+.+|++|+.||+|+|||++.+. .....
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~  297 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS  297 (440)
T ss_pred             cccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence            6662 235888888899999999887632   23455 788899999999999999999999999999998763 22334


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---~~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDl  151 (568)
                      .+.|...|+.|.|+.+-.+|++|+.||+++|||+|.   ++++..+ .|..+|+++.|+|. ...|++++.|..|.|||+
T Consensus       298 ~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  298 TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            589999999999999777999999999999999986   5667777 59999999999995 578888999999999999


Q ss_pred             CCCCC---------------ceEEEeecCCCCCeeEEEEccC
Q 008356          152 RGKPQ---------------PLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       152 rt~~~---------------~v~~l~~~~h~~~VtsLafspd  178 (568)
                      .....               |.+.+-.+..+..|..+.|++.
T Consensus       378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ  419 (440)
T ss_pred             eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence            64211               1222222233456888999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.72  E-value=1.4e-16  Score=180.41  Aligned_cols=191  Identities=16%  Similarity=0.245  Sum_probs=153.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC------------------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 008356            2 YNCKDEHLASISLSGDLILHNLAS------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~t------------------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~   63 (568)
                      |++||++||+|++|+.|.||+...                  .+.+..+.+ |...|.+++|+|++. +|++++.|++|.
T Consensus        77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~-~lvS~s~DnsVi  154 (942)
T KOG0973|consen   77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDS-LLVSVSLDNSVI  154 (942)
T ss_pred             ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCcc-EEEEecccceEE
Confidence            899999999999999999999762                  124566776 777788899999987 999999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------------------
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP----------------------------  115 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~----------------------------  115 (568)
                      |||..+.+ .+..+++|...|..+.|.|-|++|++-+.|++|+||++.+-..                            
T Consensus       155 iwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  155 IWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             EEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence            99999884 6889999999999999999999999999999999999632110                            


Q ss_pred             -------------------------eeEeecCCCeEEEEEecC-----CC------------EEEEEEcCCeEEEEECCC
Q 008356          116 -------------------------SSCITYEAPFSSLAFIDD-----DW------------ILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       116 -------------------------v~~~~h~~~ItsLafsPd-----g~------------~LasGs~DG~V~VWDlrt  153 (568)
                                               +..++|.+++.+++|+|.     .+            ++|+|+.|+.|.||....
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence                                     011358889999999982     12            788899999999999866


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      . +|+.+... --...|..++|+|||-.            |+.++.||+|.+..+.
T Consensus       314 ~-RPl~vi~~-lf~~SI~DmsWspdG~~------------LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  314 P-RPLFVIHN-LFNKSIVDMSWSPDGFS------------LFACSLDGTVALIHFE  355 (942)
T ss_pred             C-Cchhhhhh-hhcCceeeeeEcCCCCe------------EEEEecCCeEEEEEcc
Confidence            5 44443332 23467999999997654            4555668888877764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.72  E-value=3.4e-15  Score=150.20  Aligned_cols=191  Identities=13%  Similarity=0.107  Sum_probs=143.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      ++.+++++.|+.|++||+.+++.+..+.. +. .+..++|+++++.+++++..++.|++||..+.+. ...+..+.. +.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~-~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPD-PE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEEC-CC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCC-cc
Confidence            45788999999999999999998888875 33 3567999999985557778899999999987763 334444433 57


Q ss_pred             EEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCCCceEEEee
Q 008356           86 GISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        86 slafsPdg~~LaSg-s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG-~V~VWDlrt~~~~v~~l~~  163 (568)
                      .++|+|+++.++++ ..|+.|++||+++.+.+..+.....+.+++|+|++.+++++..++ .+.+||.++... ...+. 
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-
Confidence            78999999877654 568999999999988777776666678999999999999988765 577789887632 22221 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~  215 (568)
                        ....+..++|++++++++           +++..++.|++||+.......
T Consensus       155 --~~~~~~~~~~s~dg~~l~-----------~~~~~~~~v~i~d~~~~~~~~  193 (300)
T TIGR03866       155 --VDQRPRFAEFTADGKELW-----------VSSEIGGTVSVIDVATRKVIK  193 (300)
T ss_pred             --cCCCccEEEECCCCCEEE-----------EEcCCCCEEEEEEcCcceeee
Confidence              233457789999766543           333457889999998765433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.71  E-value=1.9e-16  Score=157.89  Aligned_cols=193  Identities=16%  Similarity=0.222  Sum_probs=152.5

Q ss_pred             CCCEEEEEECCCcEEEEECCCCc----------eeEEe----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            5 KDEHLASISLSGDLILHNLASGA----------KAAEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~----------~v~~l----~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      .|+++++|+.||.|.|||+++-.          .++.+    ...|+-.|..+.|-|-..-+|.+++.|.+++|||..+.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            57899999999999999997532          12212    22366778999999987778999999999999999887


Q ss_pred             CceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCe
Q 008356           71 SPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGR  145 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~  145 (568)
                      +  .......++.|++-+|+|   ...+|++|..|-+|++.|+..|...+.+ +|.+.|.++.|+|.. .+|++|+.||.
T Consensus       135 Q--~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  135 Q--EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             e--eeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            6  334455677899999998   4667888889999999999999998888 799999999999964 56788999999


Q ss_pred             EEEEECCCCCCceEEEe------------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          146 VVFYDIRGKPQPLTVLR------------ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~------------~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      |++||+|...-++.++.            ...|.+.|..++|..++.+++.+            +.|..+++|+....
T Consensus       213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~------------gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC------------GTDDRIRVWNMESG  278 (397)
T ss_pred             EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc------------cCccceEEeecccC
Confidence            99999986432333332            23577889999998876665555            56999999986543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.71  E-value=1.5e-17  Score=167.30  Aligned_cols=190  Identities=14%  Similarity=0.156  Sum_probs=157.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      .|+.|.+.||+|+.||.|+||.+.+|++++.|...|...|+|+.|+.|+. .+++++.|.+++|.-+..++. +..+++|
T Consensus       270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~-LKEfrGH  347 (508)
T KOG0275|consen  270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKC-LKEFRGH  347 (508)
T ss_pred             eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchh-HHHhcCc
Confidence            48899999999999999999999999999999977888999999999998 588999999999999998884 6789999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee----------------------------------------
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----------------------------------------  120 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~----------------------------------------  120 (568)
                      ...|+...|.++|.+|++++.||+|++|+..+.+++.++.                                        
T Consensus       348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV  427 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV  427 (508)
T ss_pred             cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence            9999999999999999999999999999987765543321                                        


Q ss_pred             --------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356          121 --------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (568)
Q Consensus       121 --------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~  192 (568)
                              ..+.+.+++++|.|.++++.++|+.++.|....+. ....+.  .|...|..++-+|..+.           
T Consensus       428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~-LE~tl~--VhEkdvIGl~HHPHqNl-----------  493 (508)
T KOG0275|consen  428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK-LERTLP--VHEKDVIGLTHHPHQNL-----------  493 (508)
T ss_pred             eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc-eeeeee--cccccccccccCcccch-----------
Confidence                    12334566778888888888888888888887763 334444  57777888888885444           


Q ss_pred             EEEEecCCCcEEcCC
Q 008356          193 ALLGGAVGDSILMPD  207 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWD  207 (568)
                       +++-+.|+.+++|.
T Consensus       494 -lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  494 -LASYSEDGLLKLWK  507 (508)
T ss_pred             -hhhhcccchhhhcC
Confidence             44446799999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.71  E-value=7.2e-16  Score=152.19  Aligned_cols=148  Identities=15%  Similarity=0.211  Sum_probs=126.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCC------C
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGR------S   71 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-----DGtV~VWDl~t~------~   71 (568)
                      +.+.++|++|+.|.+++|||+++|+.+..++  ....|..+.|+.+|. +++...+     .+.|.++|++..      +
T Consensus        61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   61 DWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             cCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            3456789999999999999999999999988  567889999999997 4544443     367999999632      2


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                      .+...+..+...++.+.|.|-+++|++|..||.|.+||+++++.+...  .|...|+.+.+++|..++++++.|.+-++|
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV  217 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence            236667778899999999999999999999999999999998655443  588899999999999999999999999999


Q ss_pred             ECCC
Q 008356          150 DIRG  153 (568)
Q Consensus       150 Dlrt  153 (568)
                      |.++
T Consensus       218 D~~t  221 (327)
T KOG0643|consen  218 DVRT  221 (327)
T ss_pred             eccc
Confidence            9985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.71  E-value=1.5e-16  Score=159.57  Aligned_cols=165  Identities=16%  Similarity=0.251  Sum_probs=139.4

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-----------------CCceeEEeccCCCCeEEEEEcCCCCEEE
Q 008356           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-----------------RSPKVSWLKQHSAPTAGISFSSDDKIIA   97 (568)
Q Consensus        35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-----------------~~~~v~~l~~H~~~VtslafsPdg~~La   97 (568)
                      .|+.++++.+|++||. ++++|+.|..|+|.|+..                 ..+.++.+..|.++|+++.|+|....|+
T Consensus       110 ~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             ecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence            4888999999999998 999999999999999851                 1145788999999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCc---eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEE
Q 008356           98 SVGLDKKLYTYDPGSRR---PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC  174 (568)
Q Consensus        98 Sgs~DGtV~IWDlrt~~---~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLa  174 (568)
                      +++.|++|++||+....   ....+....++.++.|+|.|.+|++|.....+++||+++.++-+.......|.+.|+++.
T Consensus       189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~  268 (430)
T KOG0640|consen  189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR  268 (430)
T ss_pred             eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence            99999999999998643   334556778999999999999999999999999999998754444334447999999999


Q ss_pred             EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +++.+            .++++++.||.|++||=-...
T Consensus       269 Ys~t~------------~lYvTaSkDG~IklwDGVS~r  294 (430)
T KOG0640|consen  269 YSSTG------------SLYVTASKDGAIKLWDGVSNR  294 (430)
T ss_pred             ecCCc------------cEEEEeccCCcEEeeccccHH
Confidence            99854            466777889999999954433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.70  E-value=1.6e-16  Score=164.17  Aligned_cols=189  Identities=17%  Similarity=0.270  Sum_probs=148.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---------   72 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---------   72 (568)
                      |.++++++++++.|+.+++|++...+...++.+ |.+.|+++.|..... .+++|+.|.+|++||+....+         
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~  304 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQ  304 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccccc
Confidence            678899999999999999999999999999998 777888888876544 367777777777777643221         


Q ss_pred             -----------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---
Q 008356           73 -----------------------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---  120 (568)
Q Consensus        73 -----------------------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---  120 (568)
                                                   .......+ +.|+++..++++..|++++.|.++.++|+++.+....+.   
T Consensus       305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g  383 (459)
T KOG0288|consen  305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG  383 (459)
T ss_pred             ccceEecceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence                                         01122222 368999999999999999999999999999988877763   


Q ss_pred             --cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356          121 --YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (568)
Q Consensus       121 --h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s  198 (568)
                        .....+.+.|+|++.|+++|+.||.|+||++.+.+ +.+.+........|++++|+|.|.+++.+            +
T Consensus       384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsa------------d  450 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSA------------D  450 (459)
T ss_pred             cccccccceeEECCCCceeeeccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhcc------------c
Confidence              34458899999999999999999999999999884 55666543333379999999977665554            5


Q ss_pred             CCCcEEcC
Q 008356          199 VGDSILMP  206 (568)
Q Consensus       199 ~Dg~V~VW  206 (568)
                      .++.+.+|
T Consensus       451 k~~~v~lW  458 (459)
T KOG0288|consen  451 KQKAVTLW  458 (459)
T ss_pred             CCcceEec
Confidence            58888888

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.69  E-value=1.6e-16  Score=172.41  Aligned_cols=192  Identities=19%  Similarity=0.232  Sum_probs=158.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      .+|+|++||+|...|.|+||++..-+....+.. |+..|.|+.|+..  +..+|++++.|..|+|||+..+..++..+.+
T Consensus       467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~  545 (1080)
T KOG1408|consen  467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG  545 (1080)
T ss_pred             ECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence            589999999999999999999988888888886 7788899999853  3458999999999999998544433444444


Q ss_pred             CCCC-------------------------------------------------eEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 008356           80 HSAP-------------------------------------------------TAGISFSSDDKIIASVGLDKKLYTYDP  110 (568)
Q Consensus        80 H~~~-------------------------------------------------VtslafsPdg~~LaSgs~DGtV~IWDl  110 (568)
                      |...                                                 +++++..|..+++++++.|+.|+|||+
T Consensus       546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i  625 (1080)
T KOG1408|consen  546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI  625 (1080)
T ss_pred             cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEec
Confidence            4433                                                 455666677788899999999999999


Q ss_pred             CCCceeeEee----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          111 GSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       111 rt~~~v~~~~----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      +.++.++.|+    |++....+...|.|.||++.+.|.++.+||.-.+++.   -+.++|...|+.+.|.+|.+      
T Consensus       626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv---A~m~GHsE~VTG~kF~nDCk------  696 (1080)
T KOG1408|consen  626 ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV---AQMTGHSEAVTGVKFLNDCK------  696 (1080)
T ss_pred             cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh---hhhcCcchheeeeeecccch------
Confidence            9999999883    6678889999999999999999999999999998543   23348999999999999644      


Q ss_pred             cCCCCeEEEEecCCCcEEcCCCC
Q 008356          187 TCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                            .|++.+.|++|.||.+.
T Consensus       697 ------HlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  697 ------HLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ------hheeecCCceEEEEECc
Confidence                  45555679999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.69  E-value=4.1e-17  Score=168.59  Aligned_cols=207  Identities=14%  Similarity=0.181  Sum_probs=163.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |-++...|++|+.|..|++|++...+  .+..+.+ ..+.|+.++|.+++. .+++++.|+.+++|+++... ...++.+
T Consensus       183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r-~~~TLsG  259 (459)
T KOG0288|consen  183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLR-LRHTLSG  259 (459)
T ss_pred             EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCc-eEEeecCCCceeeeeccchh-hhhhhcc
Confidence            34556789999999999999987655  4555655 556789999999998 57788999999999998877 4778999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |.+.|+++.|......+++|+.|.+|++||+....+...+-....+..|+..  ...+++|+.|++|++||.+.... ..
T Consensus       260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~  336 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TR  336 (459)
T ss_pred             cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCce-ee
Confidence            9999999999986666999999999999999998888887667777777776  56889999999999999998743 22


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEec----------------------------------cCCCCeEEEEecCCCcEEc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDET----------------------------------TCKAETALLGGAVGDSILM  205 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s----------------------------------~ssd~~~Lls~s~Dg~V~V  205 (568)
                      .+.   -.+.|+++..+++|..+.+++                                  -++++.++++|+.||.|+|
T Consensus       337 sv~---~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i  413 (459)
T KOG0288|consen  337 SVP---LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI  413 (459)
T ss_pred             Eee---cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence            222   335788888877776655332                                  1346667888888999999


Q ss_pred             CCCCCCCccccc
Q 008356          206 PDPLPSVTTSSV  217 (568)
Q Consensus       206 WDlr~~~~~~s~  217 (568)
                      |++........+
T Consensus       414 W~v~tgKlE~~l  425 (459)
T KOG0288|consen  414 WSVFTGKLEKVL  425 (459)
T ss_pred             EEccCceEEEEe
Confidence            988765554433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=169.78  Aligned_cols=192  Identities=20%  Similarity=0.260  Sum_probs=158.4

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      ..+.++|++|+.+++|.+|....++.-..+.. ..-.+++++|+.+|. +++.|++|-.|++-++.... ....+++|.+
T Consensus        63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a  139 (933)
T KOG1274|consen   63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA  139 (933)
T ss_pred             eecccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCc-EEEeecCceeEEEEeccccc-hheeecccCC
Confidence            45677999999999999999887765433332 446789999999998 89999999999999997766 3778999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      +|.++.|+|++++|++.+.||.|++||+.++.+...+.         ....+..++|+|++..|++...|+.|++|+..+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            99999999999999999999999999999987765552         134577899999998999999999999999988


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ..... .++...+...+..+.|+|+|+||+++            ..|+.|.|||+..
T Consensus       220 we~~f-~Lr~~~~ss~~~~~~wsPnG~YiAAs------------~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  220 WELQF-KLRDKLSSSKFSDLQWSPNGKYIAAS------------TLDGQILVWNVDT  263 (933)
T ss_pred             ceehe-eecccccccceEEEEEcCCCcEEeee------------ccCCcEEEEeccc
Confidence            75433 34433344559999999998887766            5699999999873

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=4.7e-16  Score=167.02  Aligned_cols=200  Identities=16%  Similarity=0.242  Sum_probs=153.1

Q ss_pred             ccCCCCEEEE--EECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 008356            2 YNCKDEHLAS--ISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---   71 (568)
Q Consensus         2 fSpdG~~Las--Gs~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---   71 (568)
                      |+++.+++|+  .+..|.|.||++.....     +..+.  +...|+++.|+|...+.|+.+++||.|++|.+..+.   
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence            5666777765  45679999999975332     22233  456789999999888899999999999999995432   


Q ss_pred             ---ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           72 ---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        72 ---~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                         .....+..|...|+.+.|+| -.+.|++++.|.+|++||+++.+....+ +|.+.|..++|+|+|+.+++.+.||+|
T Consensus       665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~  744 (1012)
T KOG1445|consen  665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL  744 (1012)
T ss_pred             ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence               22567889999999999999 7789999999999999999998766555 899999999999999999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +||+.+..++++..-.... ...-..|.|.-+|+++++.+.        .-...+.|.+||.....
T Consensus       745 rVy~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~Gf--------dk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  745 RVYEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVVGF--------DKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             EEeCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEecc--------cccchhhhhhhhhhhcc
Confidence            9999999887665543221 133345778878777655421        11225667777765443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.68  E-value=9e-16  Score=153.66  Aligned_cols=167  Identities=21%  Similarity=0.305  Sum_probs=135.9

Q ss_pred             eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008356           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLY  106 (568)
Q Consensus        28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~  106 (568)
                      ...++....++.|.+|+|+|....+++++++||+||+|+++.. ...-+....|.++|.+++|+.||..+++|+.|+.++
T Consensus        18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k   97 (347)
T KOG0647|consen   18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK   97 (347)
T ss_pred             cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence            3445666678899999999976668889999999999999763 333355677999999999999999999999999999


Q ss_pred             EEECCCCceeeEeecCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356          107 TYDPGSRRPSSCITYEAPFSSLAFIDDDW--ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       107 IWDlrt~~~v~~~~h~~~ItsLafsPdg~--~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      +||+.+++...+-.|.++|.++.|-+...  +|++|+.|.+|++||+|.. .++..+.   -.+.++++..-.       
T Consensus        98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~---LPeRvYa~Dv~~-------  166 (347)
T KOG0647|consen   98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ---LPERVYAADVLY-------  166 (347)
T ss_pred             EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee---ccceeeehhccC-------
Confidence            99999998887778999999999998665  8999999999999999976 4555554   446677665432       


Q ss_pred             eccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          185 ETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                             .+++.+..++.|.+|+++...
T Consensus       167 -------pm~vVata~r~i~vynL~n~~  187 (347)
T KOG0647|consen  167 -------PMAVVATAERHIAVYNLENPP  187 (347)
T ss_pred             -------ceeEEEecCCcEEEEEcCCCc
Confidence                   244455559999999996543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=7.4e-16  Score=154.81  Aligned_cols=195  Identities=17%  Similarity=0.270  Sum_probs=162.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |-..|+.+++++.|.+..+||++++..+..+.+ |+...+.++-+|..+ ++++.+.|.+.++||++..-..+..+.+|.
T Consensus       280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt  357 (481)
T KOG0300|consen  280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT  357 (481)
T ss_pred             hhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence            344688999999999999999999999999998 555566667788776 899999999999999997766688999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|+++.|.- +..+++|+.|.+|++||+++. .++..+....+++.++.+..+.+++.-..+..|++||+..... ..+
T Consensus       358 dtVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRl  435 (481)
T KOG0300|consen  358 DTVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARL  435 (481)
T ss_pred             cceeEEEEec-CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccC
Confidence            9999999995 456899999999999999985 4778888999999999999889999999999999999987532 111


Q ss_pred             E--eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          161 L--RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       161 l--~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      -  ...+|..-|+|++|..+...          .-|++++-|+.+.-|.+..
T Consensus       436 PrtsRqgHrRMV~c~AW~eehp~----------cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  436 PRTSRQGHRRMVTCCAWLEEHPA----------CNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             CcccccccceeeeeeeccccCcc----------cccccccccceeeeeEecc
Confidence            1  22378899999999875322          2367777899999998753

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=4.9e-15  Score=143.26  Aligned_cols=192  Identities=16%  Similarity=0.251  Sum_probs=147.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--Cce---eEEeeCCCCCcEEEEEEcc----------------------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS--GAK---AAELKDPNEQVLRVLDYSR----------------------------   47 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t--g~~---v~~l~~~h~~~Vs~Lafsp----------------------------   47 (568)
                      +|+|+|++|++|+.|.+|++...+.  .+.   -.++.- |++.|++++|-.                            
T Consensus        96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen   96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             EecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence            5999999999999999999875532  211   112221 444555555432                            


Q ss_pred             ------------------CCCeEEEEEeCCCeEEEEECCCCCceeEEecc--C-----CCCeEEEEEcCCCCEEEEEeCC
Q 008356           48 ------------------NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ--H-----SAPTAGISFSSDDKIIASVGLD  102 (568)
Q Consensus        48 ------------------dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~--H-----~~~VtslafsPdg~~LaSgs~D  102 (568)
                                        ++- +|++|++|.+|++||++-+.+ +..+..  |     ...|.+++..|.|++|++|-.|
T Consensus       175 ~~~a~sghtghilalyswn~~-m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d  252 (350)
T KOG0641|consen  175 GFHALSGHTGHILALYSWNGA-MFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD  252 (350)
T ss_pred             cceeecCCcccEEEEEEecCc-EEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence                              222 578899999999999976653 333221  2     2569999999999999999999


Q ss_pred             CeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCceEEEeecCCCCCeeEEEEccC
Q 008356          103 KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQPLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       103 GtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~---~~~v~~l~~~~h~~~VtsLafspd  178 (568)
                      ....+||++.+++++.+ .|...|+|+.|+|...++++++.|..|++-|++..   +.++.++.  .|...+..+.|+|.
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQ  330 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCc
Confidence            99999999999999888 79999999999999999999999999999999863   22333333  68888889999994


Q ss_pred             CCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          179 KPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       179 g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                                  +.-+++.+.|+++.+|-+.
T Consensus       331 ------------d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 ------------DFSFISSSADKTATLWALN  349 (350)
T ss_pred             ------------cceeeeccCcceEEEeccC
Confidence                        4456677779999999653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=4e-17  Score=177.81  Aligned_cols=178  Identities=20%  Similarity=0.316  Sum_probs=155.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+++..+|++|..+|+|++||++.++.++.+.+ |...+..+.|+|.+. +++.|+.|+.+++||++...+ .....+|.
T Consensus        78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~  154 (825)
T KOG0267|consen   78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-SHTYKSHT  154 (825)
T ss_pred             cCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceE-EeccccccccceehhhhccCc-eeeecCCc
Confidence            667778899999999999999999999999998 555556689999998 789999999999999986554 67788899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|.++.|.|+|++++++++|.+++|||+..|+....|. |.+.+..+.|+|..-.++.|+.|+.|++||+++.. .+..
T Consensus       155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~I~s  233 (825)
T KOG0267|consen  155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-VISS  233 (825)
T ss_pred             ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-Eeec
Confidence            999999999999999999999999999999999999985 99999999999999999999999999999999762 1111


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEe
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ..  .....|.++.|+++++.+.++
T Consensus       234 ~~--~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  234 GK--PETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             cC--CccCCceeeeecCCceeeecC
Confidence            11  345789999999999888776

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.8e-15  Score=157.76  Aligned_cols=195  Identities=13%  Similarity=0.158  Sum_probs=150.8

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      .+.||+|+.|.+|++||+.++++...+. +|.+.|.+++|++....+|++|+.|++|.++|++.....-..+ ...+.|-
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VE  333 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVE  333 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceE
Confidence            3578999999999999999999998888 5889999999999998899999999999999998533222222 2456799


Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           86 GISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        86 slafsP-dg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      .++|+| ....++++..||+|+.+|+|.. +++..+ .|.++|.+++++.. ..+|++++.|+.|++|++..... ..+.
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~  412 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVK  412 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccc
Confidence            999999 6677888899999999999985 777777 69999999999985 56888999999999999986532 1111


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      ...-.-+...|+++.|+-           ...|+.++..+.++|||+....+.
T Consensus       413 ~~~~~~~rl~c~~~~~~~-----------a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  413 EHSFKLGRLHCFALDPDV-----------AFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccccccceeecccCCCc-----------ceEEEecCccceEEEeecccChhH
Confidence            100112335666666653           234445555678999998765543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.67  E-value=1.2e-16  Score=156.38  Aligned_cols=193  Identities=18%  Similarity=0.247  Sum_probs=163.8

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~   83 (568)
                      .+..+-|++..|=+-+|||.-+|..+..+.  |+..|..++|+.|.. .|++|+.+..++|||++..+.+...+.+|.+.
T Consensus        69 ~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   69 KNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             chhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence            344456778888889999999999999988  788999999999987 79999999999999998887777889999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      |..+.|....+.|++...|++||+||.+++..++.+.....++++.++++|++|.++. .+.|.+||..... +++.+  
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~-~lKs~--  221 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG-LLKSY--  221 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecccccc-ceeec--
Confidence            9999999988999999999999999999999999999999999999999999887765 4779999999873 33333  


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                       .-...|.+..++|+.            ..+++++.|..++.||.........
T Consensus       222 -k~P~nV~SASL~P~k------------~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  222 -KMPCNVESASLHPKK------------EFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             -cCccccccccccCCC------------ceEEecCcceEEEEEeccCCceeee
Confidence             345678899999954            4556667799999999876554443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.67  E-value=1.1e-15  Score=159.85  Aligned_cols=199  Identities=15%  Similarity=0.261  Sum_probs=165.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE-Eee----------------CCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAA-ELK----------------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~-~l~----------------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~   63 (568)
                      +++++++++++++.+|+|.=|++.+++... .+.                ..|...+.+++.++|++ +|++|+.|..|.
T Consensus       149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~  227 (479)
T KOG0299|consen  149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQ  227 (479)
T ss_pred             EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EEEecCCCceEE
Confidence            367899999999999999999998887431 111                03556678899999998 899999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~  142 (568)
                      |||.++.+. +..+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++ +|...|..|....-++.+.+|+.
T Consensus       228 Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr  306 (479)
T KOG0299|consen  228 IWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR  306 (479)
T ss_pred             EecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccc
Confidence            999999884 7778999999999999988889999999999999999887666544 89999999998888889999999


Q ss_pred             CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       143 DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                      |+++++|++....+  .++.  +|.+.+-|++|-.             +..+++|+.+|.|.+|++....+.....
T Consensus       307 DrT~rlwKi~eesq--lifr--g~~~sidcv~~In-------------~~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  307 DRTVRLWKIPEESQ--LIFR--GGEGSIDCVAFIN-------------DEHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             cceeEEEeccccce--eeee--CCCCCeeeEEEec-------------ccceeeccCCceEEEeeecccCceeEee
Confidence            99999999955432  3344  7888999999864             3567888999999999998766654443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.2e-16  Score=179.52  Aligned_cols=197  Identities=20%  Similarity=0.300  Sum_probs=155.1

Q ss_pred             ccCCCCE----EEEEECCCcEEEEECCC---Cc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356            2 YNCKDEH----LASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         2 fSpdG~~----LasGs~DG~V~VWDl~t---g~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      |.+.|..    ||.|..||.|.+||...   +.   .+..+.. |.+.|..++|++...++|++|+.||.|.|||+...+
T Consensus        72 W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~  150 (1049)
T KOG0307|consen   72 WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE  150 (1049)
T ss_pred             ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence            5555544    88888999999999864   22   2334444 778889999999998899999999999999997755


Q ss_pred             ceeEE-eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCC-CEEEEEEcCC-
Q 008356           72 PKVSW-LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDD-WILTAGTSNG-  144 (568)
Q Consensus        72 ~~v~~-l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg-~~LasGs~DG-  144 (568)
                      ..... -....+.|.++.|+. ....|++++.+|++.|||+|..+++..+...   ..+..++|+|+. ..|++++.|. 
T Consensus       151 tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~  230 (1049)
T KOG0307|consen  151 TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS  230 (1049)
T ss_pred             CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence            33322 222467899999998 6677899999999999999998877666432   348899999975 4566665543 


Q ss_pred             --eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          145 --RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       145 --~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                        .|.+||+|....+++++.  +|...|.++.|++.           |..++++++.|+.|.+|+.....
T Consensus       231 ~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~-----------D~~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  231 APVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQ-----------DPRLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             CceeEeecccccCCchhhhc--ccccceeeeccCCC-----------CchhhhcccCCCCeeEecCCCce
Confidence              499999999888888886  89999999999985           55677778889999999987644

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.65  E-value=3.7e-14  Score=142.69  Aligned_cols=199  Identities=14%  Similarity=0.124  Sum_probs=141.6

Q ss_pred             CccCCCCEEEEE-ECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasG-s~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|+++.++++ ..++.|++||+.+++.+..+..  ...+.+++|+|++. +++++..++ .+++||..+... .....
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~-~~~~~  154 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEI-VDNVL  154 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeE-EEEEE
Confidence            378999877655 4689999999998887777763  23357799999998 677776654 577889877653 22222


Q ss_pred             cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeEeecC------C--CeEEEEEecCCCEEEEE-EcCCeEEE
Q 008356           79 QHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYE------A--PFSSLAFIDDDWILTAG-TSNGRVVF  148 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt~~~v~~~~h~------~--~ItsLafsPdg~~LasG-s~DG~V~V  148 (568)
                       ....+.+++|++++++|+.+ ..++.|++||+++++.+..+...      .  ....++|+|++++++++ ..++.|.+
T Consensus       155 -~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       155 -VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             -cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence             23456789999999988554 46999999999998876655311      1  23468899999986554 45678999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                      ||+++.+ ....+   .+...+.+++|+|+|++|+++           ...++.|++||++......+...
T Consensus       234 ~d~~~~~-~~~~~---~~~~~~~~~~~~~~g~~l~~~-----------~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       234 VDAKTYE-VLDYL---LVGQRVWQLAFTPDEKYLLTT-----------NGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             EECCCCc-EEEEE---EeCCCcceEEECCCCCEEEEE-----------cCCCCeEEEEECCCCcEEEEEEc
Confidence            9998763 22322   234578999999987655433           24588999999998776555543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.7e-14  Score=145.46  Aligned_cols=178  Identities=18%  Similarity=0.242  Sum_probs=139.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEec--
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLK--   78 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~~~v~~l~--   78 (568)
                      .+|-++.+++++.|++|++||++..++...+.... ..  .++|.|+|- ++|++.....|++||++.- +.+...+.  
T Consensus       108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~p--i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~  183 (311)
T KOG1446|consen  108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RP--IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT  183 (311)
T ss_pred             ecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-Cc--ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC
Confidence            46888999999999999999999888777666422 22  368999997 7888887779999999643 22233332  


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cC--C-CeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YE--A-PFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        79 -~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~--~-~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                       ....+.+.|.|+|||++|+.+...+.+++.|--+|..+..+. +.  . ---..+|.||++++++|..||+|++|++++
T Consensus       184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence             346779999999999999999999999999999998877773 22  1 125788999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +. .+..++. .+.+++.++.|+|.-..++++
T Consensus       264 g~-~v~~~~~-~~~~~~~~~~fnP~~~mf~sa  293 (311)
T KOG1446|consen  264 GK-KVAVLRG-PNGGPVSCVRFNPRYAMFVSA  293 (311)
T ss_pred             Cc-EeeEecC-CCCCCccccccCCceeeeeec
Confidence            85 3444442 278899999999965444444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=5.7e-15  Score=148.78  Aligned_cols=196  Identities=13%  Similarity=0.147  Sum_probs=149.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce--eEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ce-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK--AAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PK-   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---~~-   73 (568)
                      +|+.||++|++++.|+.|+||++.+-..  -+.++.. ..+.-+.+.|.||.+.+++..-...++++|.+...+   .. 
T Consensus        93 ~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~  172 (420)
T KOG2096|consen   93 AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH  172 (420)
T ss_pred             EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc
Confidence            5899999999999999999999875321  1111110 112345689999998788888888899999874321   11 


Q ss_pred             -------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           74 -------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        74 -------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                             ...-+.|...|..+-...++.+|++++.|.+|.+||++ |+.+..+ .....-...+.+|+|++|++++..-.
T Consensus       173 ~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD  251 (420)
T KOG2096|consen  173 HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD  251 (420)
T ss_pred             ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC
Confidence                   22344577778888888889999999999999999999 7777777 44556778899999999999999999


Q ss_pred             EEEEECCC-----CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          146 VVFYDIRG-----KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       146 V~VWDlrt-----~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |+||.+--     .+...+.+...+|...|..++|+++            ...+++.+.||++++||..
T Consensus       252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------------S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------------STRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------------cceeEEEecCCcEEEeecc
Confidence            99998742     1223445555699999999999995            4566777889999999975

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.63  E-value=1.1e-14  Score=150.20  Aligned_cols=198  Identities=19%  Similarity=0.276  Sum_probs=156.2

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +|+| +++.||+|+.|.+|.||++-.+.       .+..+.+ |...|..++|+|...++|++++.|.+|.+||+.+++.
T Consensus        88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea  166 (472)
T KOG0303|consen   88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA  166 (472)
T ss_pred             ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence            3676 45789999999999999986543       3566776 7778888999999999999999999999999999985


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCC-CeEEEEEecCCCEEEEEE---cCCeEE
Q 008356           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGT---SNGRVV  147 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~-~ItsLafsPdg~~LasGs---~DG~V~  147 (568)
                      .+. +. |.+.|+++.|+.||.+|++.+.|++|+|||.++++.+..- .|.+ .-..+.|-.++.++.+|.   .+..+-
T Consensus       167 li~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~a  244 (472)
T KOG0303|consen  167 LIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIA  244 (472)
T ss_pred             eee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccccee
Confidence            443 44 9999999999999999999999999999999999988776 5544 455677888888666664   377899


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      |||..+-..++.... ......|.---|+++           ...++++|-.|+.|+.|++.+-.+
T Consensus       245 Lwdp~nl~eP~~~~e-lDtSnGvl~PFyD~d-----------t~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  245 LWDPNNLEEPIALQE-LDTSNGVLLPFYDPD-----------TSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ccCcccccCcceeEE-eccCCceEEeeecCC-----------CCEEEEEecCCcceEEEEecCCCc
Confidence            999998776644433 234444554455554           455667777799999999876554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=7.8e-15  Score=147.36  Aligned_cols=161  Identities=21%  Similarity=0.309  Sum_probs=130.9

Q ss_pred             EeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 008356           31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP  110 (568)
Q Consensus        31 ~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDl  110 (568)
                      ++..+..+.|..|.|++.+. .|+++++||++++||+....  ......|..++.+++|.+ ...+++|+.||+|+.+|+
T Consensus         7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence            45555578899999998877 57777899999999998875  455667999999999995 778999999999999999


Q ss_pred             CCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       111 rt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      .+++....-.|..+|.|+.+.+....+++|+.|++|++||.|... ....+   .....|.++...-             
T Consensus        83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~---d~~kkVy~~~v~g-------------  145 (323)
T KOG1036|consen   83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF---DQGKKVYCMDVSG-------------  145 (323)
T ss_pred             cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc---ccCceEEEEeccC-------------
Confidence            999988888999999999999988999999999999999999742 22222   2345677776432             


Q ss_pred             CeEEEEecCCCcEEcCCCCCCCc
Q 008356          191 ETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       ..|+.++.|+.|.+||+|....
T Consensus       146 -~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  146 -NRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             -CEEEEeecCceEEEEEcccccc
Confidence             3455555699999999997664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=8.9e-15  Score=147.23  Aligned_cols=202  Identities=17%  Similarity=0.220  Sum_probs=143.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe----
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL----   77 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l----   77 (568)
                      ||+.|.+||+|+.||.|.|||+.+....+.+.+ |-.+|.+++|+++|+ .|++++.|..|.+||+..+.+..+..    
T Consensus        31 Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rirf~sp  108 (405)
T KOG1273|consen   31 FSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIRFDSP  108 (405)
T ss_pred             eccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEEccCc
Confidence            899999999999999999999998886666665 778899999999998 89999999999999997665321110    


Q ss_pred             ----ccCCC---------------------C----------------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 008356           78 ----KQHSA---------------------P----------------TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS  116 (568)
Q Consensus        78 ----~~H~~---------------------~----------------VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v  116 (568)
                          .-|..                     +                ..+..|.+.|++|++|...|.+.+||..+.+++
T Consensus       109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV  188 (405)
T ss_pred             cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence                00100                     0                112236667899999999999999999999888


Q ss_pred             eEee--cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC--------ceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          117 SCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ--------PLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       117 ~~~~--h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~--------~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      ..+.  ....|..+.++..|++|+.-+.|+.|+.|+++.-..        +...+...-....-.+++|+.+|.|++.++
T Consensus       189 as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  189 ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence            7774  346899999999999999999999999999873110        111111111122335677888888877764


Q ss_pred             cCCCCeEEEEecCCCcEEc
Q 008356          187 TCKAETALLGGAVGDSILM  205 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~V  205 (568)
                      ......+++-.+....|++
T Consensus       269 ~~aHaLYIWE~~~GsLVKI  287 (405)
T KOG1273|consen  269 ARAHALYIWEKSIGSLVKI  287 (405)
T ss_pred             ccceeEEEEecCCcceeee
Confidence            3333333333333334443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=6.3e-15  Score=144.09  Aligned_cols=188  Identities=15%  Similarity=0.206  Sum_probs=146.3

Q ss_pred             CCCEEEEEECCCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCC--CceeEEecc
Q 008356            5 KDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGR--SPKVSWLKQ   79 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~--~~~v~~l~~   79 (568)
                      -|++||+++.||+|.||.-++++-  ..+... |...|++++|.|.+- .+|++++.||.|.|.+.+..  -...+....
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence            588999999999999999877752  334444 788899999998752 36889999999999998654  222445678


Q ss_pred             CCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCcee--eEe-ecCCCeEEEEEecC----CCEEE
Q 008356           80 HSAPTAGISFSSD---D-----------KIIASVGLDKKLYTYDPGSRRPS--SCI-TYEAPFSSLAFIDD----DWILT  138 (568)
Q Consensus        80 H~~~VtslafsPd---g-----------~~LaSgs~DGtV~IWDlrt~~~v--~~~-~h~~~ItsLafsPd----g~~La  138 (568)
                      |.-.|+++.|.|.   |           +.|++|+.|..|+||+...++-+  ..+ .|.+.++.++|.|.    ..+||
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            9999999999984   4           67999999999999999886422  223 69999999999995    36899


Q ss_pred             EEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          139 AGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v--~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      +++.||+|.||..+....+.  +.+.  .....+..+.|+..|..|+..            +.|+.|.+|.
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~--~f~~~~w~vSWS~sGn~LaVs------------~GdNkvtlwk  284 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLE--EFPDVVWRVSWSLSGNILAVS------------GGDNKVTLWK  284 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccc--cCCcceEEEEEeccccEEEEe------------cCCcEEEEEE
Confidence            99999999999887542322  3333  345789999999987776655            3377777774

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.2e-14  Score=147.72  Aligned_cols=195  Identities=17%  Similarity=0.257  Sum_probs=153.9

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCce-eEEeccCC-CC
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHS-AP   83 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-g~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~H~-~~   83 (568)
                      ..+|++...|.|++||..+++.+.++++ +...++.++|..+ +.+.+.+|+.||+|++||++..... +.....|. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            4688899999999999999999999997 6667788888775 6678999999999999999866533 33445555 57


Q ss_pred             eEEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eeEe--ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 008356           84 TAGISFSSDDKIIASVG----LDKKLYTYDPGSRRP-SSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        84 VtslafsPdg~~LaSgs----~DGtV~IWDlrt~~~-v~~~--~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ..|++.+-.++.|++|.    .|-.|.+||+|..+. +..+  .|...|++++|+| +.++|++|+.||.|.|||+....
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            78888777788888875    466899999998765 5555  6999999999999 56899999999999999998764


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ..-..+....|...|.++.|..++           ...+++-+..+...+|++....+
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~-----------ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKK-----------YKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCC-----------cceEEEEEccCceeEEEccCCCh
Confidence            433344445688889999998753           22345555688899999876654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=6e-14  Score=141.00  Aligned_cols=199  Identities=12%  Similarity=0.214  Sum_probs=148.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----ceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC---
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS---   71 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg----~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~---   71 (568)
                      .|.+.|+++|+|+.|++|+|||....    .+....+. |.+.|..|.|.+-  |+ ++++++.|+++.||.-....   
T Consensus        20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~   97 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEA   97 (361)
T ss_pred             eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccc-eEEEEecCCceeeeeeccccccc
Confidence            47888999999999999999996533    35566776 5666666888653  54 89999999999999863211   


Q ss_pred             -----ceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCc------eeeEee--------cCCCeEEEEE
Q 008356           72 -----PKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRR------PSSCIT--------YEAPFSSLAF  130 (568)
Q Consensus        72 -----~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~------~v~~~~--------h~~~ItsLaf  130 (568)
                           .....+......|++|.|.|  -|-.+++++.||.||||+.-..-      ....+.        +..+..|+.|
T Consensus        98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW  177 (361)
T KOG2445|consen   98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW  177 (361)
T ss_pred             ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence                 12345566778899999999  67889999999999999865422      222222        5677889999


Q ss_pred             ecC---CCEEEEEEcC-----CeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356          131 IDD---DWILTAGTSN-----GRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (568)
Q Consensus       131 sPd---g~~LasGs~D-----G~V~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg  201 (568)
                      +|.   ..+||+|+.+     +.++||...... +..++-...+|..+|+.++|.|+        ......+|+.++.||
T Consensus       178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn--------~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN--------IGRSYHLLAVATKDG  249 (361)
T ss_pred             ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--------cCCceeeEEEeecCc
Confidence            983   5788888876     478999876544 33333344589999999999996        233456677778899


Q ss_pred             cEEcCCCCC
Q 008356          202 SILMPDPLP  210 (568)
Q Consensus       202 ~V~VWDlr~  210 (568)
                       |+||.++.
T Consensus       250 -v~I~~v~~  257 (361)
T KOG2445|consen  250 -VRIFKVKV  257 (361)
T ss_pred             -EEEEEEee
Confidence             99999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.60  E-value=2.2e-14  Score=141.48  Aligned_cols=170  Identities=14%  Similarity=0.206  Sum_probs=135.9

Q ss_pred             EeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 008356           31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTY  108 (568)
Q Consensus        31 ~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IW  108 (568)
                      ++++ |...+..|+|+-+|. .|++|+.|+++.+|++..... .....++|.+.|-.++|+| +...+++++.|.+|++|
T Consensus        15 ~~~~-~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   15 ELQG-HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             Hhhh-hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            3444 667789999999998 799999999999999965532 1334678999999999999 88899999999999999


Q ss_pred             ECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-----------------------------ceE
Q 008356          109 DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-----------------------------PLT  159 (568)
Q Consensus       109 Dlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~-----------------------------~v~  159 (568)
                      |++.++++..+...+.-.-+.|+|+|.+++++..|..|.+.|.++.+.                             .+.
T Consensus        93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            999999999987777777799999999999999999999999985321                             011


Q ss_pred             EEe---------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          160 VLR---------ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       160 ~l~---------~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      ++.         ...|.....||.|+|+|+|++++            +.|..+-+||+....+.
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G------------sADAlvSLWD~~ELiC~  224 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG------------SADALVSLWDVDELICE  224 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeec------------cccceeeccChhHhhhh
Confidence            111         11466677788888877777666            55999999999876653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.60  E-value=1.2e-14  Score=158.11  Aligned_cols=179  Identities=15%  Similarity=0.211  Sum_probs=148.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      ++.+|++|+.|..|.+|.+.+......+++ |+..|.++....++.  +++|++|.++++|....-   ...+.+|...|
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l---~~~l~gH~asV  143 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL---VYSLQGHTASV  143 (745)
T ss_pred             cCcceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc--eEecccccceEEecchhh---hcccCCcchhe
Confidence            455789999999999999999999999998 667778888776664  899999999999987543   34489999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      +++...|++ .+++|+.|.+|++|.-  ++.++++ +|.+.|+.+++-+++ .+++++.||.|++|++...    .++..
T Consensus       144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge----~l~~~  215 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE----VLLEM  215 (745)
T ss_pred             eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc----eeeee
Confidence            999999977 8999999999999975  6667777 799999999999875 5678899999999999654    34555


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ++|..-|+++....++.            .+++++.|+++++|+..
T Consensus       216 ~ghtn~vYsis~~~~~~------------~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSDG------------LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eccceEEEEEEecCCCC------------eEEEecCCceEEEeecC
Confidence            69999999999655433            45555678888888765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.60  E-value=1.2e-14  Score=145.11  Aligned_cols=196  Identities=21%  Similarity=0.261  Sum_probs=151.2

Q ss_pred             ccCCC-----CEEEEEECCCcEEEEECCC--Ccee--EEe----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356            2 YNCKD-----EHLASISLSGDLILHNLAS--GAKA--AEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (568)
Q Consensus         2 fSpdG-----~~LasGs~DG~V~VWDl~t--g~~v--~~l----~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~   68 (568)
                      |.|+.     ++||+.+  ..+++|.+..  .+..  ..+    ..++...++++.|+.-..+++.+.+-|-++.|||+.
T Consensus       104 wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie  181 (364)
T KOG0290|consen  104 WIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE  181 (364)
T ss_pred             ecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence            55654     3455543  4799999863  2211  111    223457889999999888899999999999999998


Q ss_pred             CCCc--eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe---ec-CCCeEEEEEecC-CCEEEEE
Q 008356           69 GRSP--KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI---TY-EAPFSSLAFIDD-DWILTAG  140 (568)
Q Consensus        69 t~~~--~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h-~~~ItsLafsPd-g~~LasG  140 (568)
                      .+..  ....+..|..+|.+++|.. .-+.+++++.||.|++||+|..+.-.++   .. ..+...++|+++ -+++|+-
T Consensus       182 ~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf  261 (364)
T KOG0290|consen  182 TGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF  261 (364)
T ss_pred             eccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence            7632  3567889999999999998 4568899999999999999987655554   22 557889999984 5677774


Q ss_pred             E-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          141 T-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       141 s-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      . ....|.|.|+|....++..++  +|.+.|+.++|.|.           ....+.+++.|..+.+||+....
T Consensus       262 ~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPh-----------S~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  262 AMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPH-----------SSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             hcCCceEEEEEecCCCcceehhh--cCcccccceEecCC-----------CCceeeecCCcceEEEEeccccc
Confidence            4 456799999999988888777  89999999999996           34566677779999999986543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.60  E-value=2.3e-14  Score=158.51  Aligned_cols=179  Identities=17%  Similarity=0.207  Sum_probs=152.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEee--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      .++.|++.+.|...|+|-+||+..|.....+-  ..|+..|+.++...-++ ++++++.+|.+++||...... ...++ 
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l-~~~l~-  532 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL-KKSLR-  532 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce-eeeec-
Confidence            36778999999999999999999999888882  34888999999988877 899999999999999988762 33333 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      -...+.++..+.....++.+..|-.|+++|..+.+.++.+ +|...|++++|+|||++|++++.|++|++||+-++. .+
T Consensus       533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~-lI  611 (910)
T KOG1539|consen  533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT-LI  611 (910)
T ss_pred             cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-ee
Confidence            3456888888888888999999999999999999999888 699999999999999999999999999999999983 33


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      ..+   .-..+.+++.|+|+|.+|++...
T Consensus       612 D~~---~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  612 DGL---LVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             eeE---ecCCcceeeEECCCCCEEEEEEe
Confidence            333   35678999999999999888744

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.60  E-value=1e-14  Score=150.25  Aligned_cols=168  Identities=13%  Similarity=0.179  Sum_probs=139.3

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 008356           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYT  107 (568)
Q Consensus        35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~------~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~I  107 (568)
                      +|...|.+++|+|.+++.|++|++|.+|.||++..+.      ..+..+.+|...|.-++|+| -.+.|++++.|.+|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            4888899999999999999999999999999995432      34778999999999999999 6788999999999999


Q ss_pred             EECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEec
Q 008356          108 YDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDET  186 (568)
Q Consensus       108 WDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~-VtsLafspdg~~Las~s  186 (568)
                      ||+.+++.+..+.|.+.|.++.|+.||.+|++.+.|..|+|||.+.+. ++..-.  +|.+. -..+.|-.+|.++.++ 
T Consensus       159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~--~heG~k~~Raifl~~g~i~tTG-  234 (472)
T KOG0303|consen  159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGV--AHEGAKPARAIFLASGKIFTTG-  234 (472)
T ss_pred             EeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeeecc--cccCCCcceeEEeccCceeeec-
Confidence            999999988888999999999999999999999999999999999984 333332  45442 3455677777744444 


Q ss_pred             cCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          187 TCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                              ++-..++++-+||......+
T Consensus       235 --------fsr~seRq~aLwdp~nl~eP  254 (472)
T KOG0303|consen  235 --------FSRMSERQIALWDPNNLEEP  254 (472)
T ss_pred             --------cccccccceeccCcccccCc
Confidence                    22234899999999887754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=6.9e-14  Score=146.59  Aligned_cols=192  Identities=16%  Similarity=0.203  Sum_probs=153.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t--g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l   77 (568)
                      .|||....|++++.||.++||.+..  ...+..+.- ...+|.+.+|.|+|...+++++....++.||+.+.+. ++...
T Consensus       220 ~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~  298 (514)
T KOG2055|consen  220 QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP  298 (514)
T ss_pred             EecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence            3899999999999999999999842  223444432 4678999999999987899999999999999977652 23334


Q ss_pred             ccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           78 KQHS-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        78 ~~H~-~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      .++. ..+....+++++++|+..+..|.|.+....+++.+..+...+.|..++|+.+++.|++.+.+|.|.+||++....
T Consensus       299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~  378 (514)
T KOG2055|consen  299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC  378 (514)
T ss_pred             CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence            4444 346778899999999999999999999999999999999999999999999999999999999999999998843


Q ss_pred             ceEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          157 PLTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       157 ~v~~l~~~~h~~~V--tsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                       +..+.   ..+.|  +++|.++++.|++++            +..|.|.|||..
T Consensus       379 -~~rf~---D~G~v~gts~~~S~ng~ylA~G------------S~~GiVNIYd~~  417 (514)
T KOG2055|consen  379 -LHRFV---DDGSVHGTSLCISLNGSYLATG------------SDSGIVNIYDGN  417 (514)
T ss_pred             -EEEEe---ecCccceeeeeecCCCceEEec------------cCcceEEEeccc
Confidence             33332   33444  556666776665555            568999999964

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.59  E-value=2.2e-14  Score=145.19  Aligned_cols=189  Identities=19%  Similarity=0.273  Sum_probs=144.6

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--EEeccCCCCe
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SWLKQHSAPT   84 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v--~~l~~H~~~V   84 (568)
                      -+||+||.-|.|+|.|+.+++....+.+ |...|+.|++.|+..+++++++.|..|++|++++..+..  --..+|.+.|
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            4788899999999999999999999987 888999999999998899999999999999999887532  1245799999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------------------------eeEe----ec--------------
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRP-------------------------SSCI----TY--------------  121 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~-------------------------v~~~----~h--------------  121 (568)
                      .+++|++++.+|++++.|..|++|++...+.                         +..+    -|              
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i  264 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI  264 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence            9999999999999999999999999862110                         0000    00              


Q ss_pred             -----CCC-----------------------------------eE--EEEEecCCCEEEEEEcCCeEEEEECCCCCCc-e
Q 008356          122 -----EAP-----------------------------------FS--SLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-L  158 (568)
Q Consensus       122 -----~~~-----------------------------------It--sLafsPdg~~LasGs~DG~V~VWDlrt~~~~-v  158 (568)
                           +..                                   |.  ..+|++.+++||.|.+.|.|.+||++..+.+ .
T Consensus       265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~  344 (385)
T KOG1034|consen  265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC  344 (385)
T ss_pred             eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence                 011                                   11  2234455788999999999999999986542 2


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      ..+........|+..+|+.++..|            +..+.|+.|.-||.
T Consensus       345 ttl~~s~~~~tVRQ~sfS~dgs~l------------v~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  345 TTLTHSKSGSTVRQTSFSRDGSIL------------VLVCDDGTVWRWDR  382 (385)
T ss_pred             ceEEeccccceeeeeeecccCcEE------------EEEeCCCcEEEEEe
Confidence            223322345678889998865544            44466999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-14  Score=151.05  Aligned_cols=188  Identities=14%  Similarity=0.202  Sum_probs=150.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-CCCCe
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSAPT   84 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~~V   84 (568)
                      ..++++||..+.|+|||+....+.+.+++ |...|+++.++-... +|++++..|.|.|..+.++.. ...+.. ....|
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkd-h~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsv  167 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKD-HQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSV  167 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccC-CcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc-ccceecCCCCeE
Confidence            46899999999999999986556666676 668999999998887 899999999999999987763 223332 24556


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        85 tslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      .-+.|++ ...+|.+++.+|.|.+||+....++..+  .|..++..|+|+| +..+|++.+.|.+|.+||.+... ....
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~  246 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDR  246 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccce
Confidence            7899999 4556788999999999999988887666  6999999999999 46788889999999999999763 3333


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.   ...+...++|.++|-+|+.+            ...|.|..||+|...
T Consensus       247 l~---y~~Plstvaf~~~G~~L~aG------------~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  247 LT---YSHPLSTVAFSECGTYLCAG------------NSKGELIAYDMRSTK  283 (673)
T ss_pred             ee---ecCCcceeeecCCceEEEee------------cCCceEEEEecccCC
Confidence            43   45678999999977665555            558999999998644

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.58  E-value=1.7e-14  Score=150.92  Aligned_cols=196  Identities=16%  Similarity=0.201  Sum_probs=151.3

Q ss_pred             CccCCC--CEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e
Q 008356            1 MYNCKD--EHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K   73 (568)
Q Consensus         1 afSpdG--~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~   73 (568)
                      +|+|..  +.+|+|...|.|-+||+.+.+    .+..+. .|...|.+|.|+|.+...+++.+.||+|++-|+.+... .
T Consensus       193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~  271 (498)
T KOG4328|consen  193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE  271 (498)
T ss_pred             EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence            477765  478889999999999995222    233344 47889999999999888899999999999999977642 1


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEE
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD  150 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~-v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWD  150 (568)
                      +..+......+..++|+.+...++.+..=|.+.+||++++.. ...+ -|+..|+.++++|. ..+|++++.|++++|||
T Consensus       272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD  351 (498)
T KOG4328|consen  272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD  351 (498)
T ss_pred             HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence            222333445677888888778888888888999999998754 2222 47779999999994 67899999999999999


Q ss_pred             CCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          151 IRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       151 lrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +|...... -++....|...|.++.|+|.+           +. |++.+.|..|+|||..
T Consensus       352 ~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----------gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  352 LRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----------GT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hhhhcCCCCcceecccccceeeeeEEcCCC-----------Cc-eEeeccCCceEEeecc
Confidence            99742211 146666899999999999963           33 6777889999999974

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.58  E-value=2.8e-14  Score=142.58  Aligned_cols=166  Identities=18%  Similarity=0.269  Sum_probs=138.0

Q ss_pred             eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------ceeE------EeccCCCCeEEEEEcC-CCCEE
Q 008356           32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------PKVS------WLKQHSAPTAGISFSS-DDKII   96 (568)
Q Consensus        32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--------~~v~------~l~~H~~~VtslafsP-dg~~L   96 (568)
                      +...|.+.|+.+.+.+....++++|+.||.|.|||++...        .+..      .-.+|.-.|..+.|-| |...+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            4456889999999998776799999999999999996432        0111      1235778899999999 88889


Q ss_pred             EEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE
Q 008356           97 ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL  173 (568)
Q Consensus        97 aSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd---g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsL  173 (568)
                      .+++.|.++++||..+-+....|..++.|.+-+++|-   --++|+|..|-.|++.|+..+. ....+.  +|.+.|.++
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~Ls--GHr~~vlaV  194 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLS--GHRDGVLAV  194 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeec--cccCceEEE
Confidence            9999999999999999999999999999999999983   3467778888999999999884 345565  999999999


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       174 afspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .|+|.           .+.+|++++.|+.|++||+|..
T Consensus       195 ~Wsp~-----------~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  195 EWSPS-----------SEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             EeccC-----------ceeEEEecCCCceEEEEEeecc
Confidence            99997           4456777788999999999865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2e-14  Score=150.57  Aligned_cols=219  Identities=16%  Similarity=0.238  Sum_probs=165.2

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDE-HLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      .|.|+|. .+++++....++.||+++.+..  ....+.....+..+..+++++ +|+..+..|.|+|....+++. +..+
T Consensus       264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el-i~s~  341 (514)
T KOG2055|consen  264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL-ITSF  341 (514)
T ss_pred             eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh-hhee
Confidence            4789998 8999999999999999887743  334444456788889999998 899999999999998887763 3333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCe--EEEEEecCCCEEEEEEcCCeEEEEECCC--
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF--SSLAFIDDDWILTAGTSNGRVVFYDIRG--  153 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~I--tsLafsPdg~~LasGs~DG~V~VWDlrt--  153 (568)
                       .-.+.|..++|+.+++.|+.++.+|.|++||++...+++.+..++.|  +++|.++++.+||+|+..|.|.|||.++  
T Consensus       342 -KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  342 -KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             -eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence             34677999999999999999999999999999999999988777665  4667778999999999999999999763  


Q ss_pred             ---CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCc
Q 008356          154 ---KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNS  230 (568)
Q Consensus       154 ---~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~ssl  230 (568)
                         ..+|++.+.  .-...|+++.|+++.+.|+.++.          ..+..+++-.+.....-..+..+....+-..++
T Consensus       421 ~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~----------~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  421 ASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASR----------VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             ccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhh----------ccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence               335555554  45678999999999999887744          235556665554443333333322222234455


Q ss_pred             ccCC
Q 008356          231 RSGP  234 (568)
Q Consensus       231 t~ss  234 (568)
                      .+++
T Consensus       489 aFSP  492 (514)
T KOG2055|consen  489 AFSP  492 (514)
T ss_pred             EecC
Confidence            5554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.7e-13  Score=149.08  Aligned_cols=195  Identities=16%  Similarity=0.295  Sum_probs=156.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC-ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg-~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      ||+.+.+.||++-.+|.|.||++..+ -+...+.++.+..|..++|++.++  |++.+-+|.|.-||+.+.++ ...+..
T Consensus        32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~-~~~~d~  108 (691)
T KOG2048|consen   32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQ-KYNIDS  108 (691)
T ss_pred             EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEecccCce-eEEecC
Confidence            57888899999999999999999754 455677887889999999997664  88999999999999998874 556777


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      ..+.|++++.+|.+..++.|++||.++.+++..++.....   ..++++.++.|+|++..|+.|+.||.|++||...+..
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence            8889999999999999999999998888888877765433   4568999999999999999999999999999998753


Q ss_pred             ceEEEee-c-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          157 PLTVLRA-C-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       157 ~v~~l~~-~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .. .... .     .....|+++.|-.+             ..++++..-|.|.+||.....
T Consensus       189 ~~-~~~~~~d~l~k~~~~iVWSv~~Lrd-------------~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  189 LH-IITMQLDRLSKREPTIVWSVLFLRD-------------STIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             EE-EeeecccccccCCceEEEEEEEeec-------------CcEEEecCCceEEEEcccCcc
Confidence            32 1111 0     12234566665543             256777778999999986544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.58  E-value=6.5e-14  Score=151.36  Aligned_cols=192  Identities=17%  Similarity=0.185  Sum_probs=136.3

Q ss_pred             CEEEEEECCCcEEEEECCCCcee------EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 008356            7 EHLASISLSGDLILHNLASGAKA------AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v------~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~   79 (568)
                      ..|+.+.+||.|.++|.......      .... .|...|.++.|.| ++.+|++++.|.++++||+.+.... ...+.+
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence            46888999999999997643321      2333 3788899999999 6668999999999999999877632 234789


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--------------------eeE--------eecCCCeEE---
Q 008356           80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRP--------------------SSC--------ITYEAPFSS---  127 (568)
Q Consensus        80 H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~--------------------v~~--------~~h~~~Its---  127 (568)
                      |...|.+++|.| +...|++|+.||.|.|||++....                    ...        ..+...|..   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence            999999999999 788999999999999999975320                    000        012233444   


Q ss_pred             EEEecCCCEEEEEEc-CCeEEEEECCCCCCc-----eEEEeecCC---CCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356          128 LAFIDDDWILTAGTS-NGRVVFYDIRGKPQP-----LTVLRACSS---SEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (568)
Q Consensus       128 LafsPdg~~LasGs~-DG~V~VWDlrt~~~~-----v~~l~~~~h---~~~VtsLafspdg~~Las~s~ssd~~~Lls~s  198 (568)
                      +.+..|...||+++. |+.|+|||++.....     ........|   .-.+.++..+.            .+.+|++.+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs------------sGt~L~AsC  290 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS------------SGTYLFASC  290 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC------------CCCeEEEEe
Confidence            555567778888776 999999999975432     222221123   22344454443            345566666


Q ss_pred             CCCcEEcCCCCCCC
Q 008356          199 VGDSILMPDPLPSV  212 (568)
Q Consensus       199 ~Dg~V~VWDlr~~~  212 (568)
                      .|+.|++|+++...
T Consensus       291 tD~sIy~ynm~s~s  304 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLS  304 (720)
T ss_pred             cCCcEEEEeccccC
Confidence            79999999998654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.57  E-value=3.2e-14  Score=153.65  Aligned_cols=151  Identities=17%  Similarity=0.226  Sum_probs=112.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEE--eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------   72 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------   72 (568)
                      |-|...+|++++.|.++++||+++.+++..  +.+ |...|..++|.+.+..+|++|+.||.|.|||++....       
T Consensus       108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~  186 (720)
T KOG0321|consen  108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD  186 (720)
T ss_pred             cCCCceeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence            556556789999999999999999887765  665 8888999999999999999999999999999853320       


Q ss_pred             -------------------eeEEeccCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEe---------e
Q 008356           73 -------------------KVSWLKQHSAPTAG---ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---------T  120 (568)
Q Consensus        73 -------------------~v~~l~~H~~~Vts---lafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~---------~  120 (568)
                                         .+...+.+...|.+   +.+..|...|++++. |+.|+|||++........         .
T Consensus       187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t  266 (720)
T KOG0321|consen  187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT  266 (720)
T ss_pred             hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence                               01223334444555   555568899999987 999999999875433221         1


Q ss_pred             c---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356          121 Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       121 h---~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      +   ...+.++..+..|.+|++.+.|+.|++|++..
T Consensus       267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            2   23466677776777877777788888888874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=6.8e-14  Score=156.29  Aligned_cols=172  Identities=16%  Similarity=0.253  Sum_probs=144.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-   79 (568)
                      +|+-+|+++|.|+.|-.|++-++.+......+++ |+..|.+|.|+|++. +|++.+-||.|++||++++... ..+.+ 
T Consensus       103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~-~tl~~v  179 (933)
T KOG1274|consen  103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILS-KTLTGV  179 (933)
T ss_pred             EEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhh-hhcccC
Confidence            4678899999999999999999999888888887 888999999999998 8999999999999999877632 22211 


Q ss_pred             -------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           80 -------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        80 -------H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                             ....+..++|+|++..++....|+.|++|+..+......+.   +...+.++.|+|+|+|||+++.||.|.||
T Consensus       180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW  259 (933)
T KOG1274|consen  180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW  259 (933)
T ss_pred             CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence                   14567889999998899999999999999999988776662   44459999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeE
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~L  182 (568)
                      |.++...       +.....|++++|.|+...|
T Consensus       260 nv~t~~~-------~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  260 NVDTHER-------HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             ecccchh-------ccccceeEEEecCCCCCee
Confidence            9998422       1334679999999986654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.3e-14  Score=143.30  Aligned_cols=176  Identities=15%  Similarity=0.165  Sum_probs=137.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CCC----ceeEEe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GRS----PKVSWL   77 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---t~~----~~v~~l   77 (568)
                      ++.+|++++.|.+|.||++. |+.+..+.. ........+.+|+|+ ++++++.--.|++|.+-   .+.    ..+..+
T Consensus       198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L  274 (420)
T KOG2096|consen  198 NAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL  274 (420)
T ss_pred             CceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence            46789999999999999997 888888875 333445678999999 78888888899999972   221    125578


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-------RPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-------~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      ++|...|..++|+++...+++++.||++++||+.-.       +.+...     ...+....++++|+|+.|++... ..
T Consensus       275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~  353 (420)
T KOG2096|consen  275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SD  353 (420)
T ss_pred             ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-Cc
Confidence            999999999999999999999999999999998531       222222     12344558999999999988764 57


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      +++|..+.++.....-.  .|...|.+++|+++|+++++|+
T Consensus       354 l~~~~se~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  354 LKVFASEDGKDYPELED--IHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             eEEEEcccCccchhHHH--hhcCceeeEEecCCCcEEeeec
Confidence            99999988643222222  5889999999999999999983

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=5.9e-14  Score=149.25  Aligned_cols=171  Identities=18%  Similarity=0.203  Sum_probs=133.1

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEe---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAEL---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---------   71 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l---~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---------   71 (568)
                      +++--|++|-.-|.|++.|....+..+.+   ....+..|+|++|-|.++.+|+.+-.+|.+++||.....         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            45556777888889999887652211111   112357899999999998899999999999999863110         


Q ss_pred             ------------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec
Q 008356           72 ------------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID  132 (568)
Q Consensus        72 ------------------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP  132 (568)
                                        .++..+......|+.++|+|||++|++++.||.++|+|..+.+.+..+ .+-+...|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence                              011122223457899999999999999999999999999988877666 4678899999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       133 dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ||++|++|++|.-|.||.+...+   -+-+.++|..+|..|+|+|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence            99999999999999999998763   3344569999999999995

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.56  E-value=2.8e-14  Score=150.44  Aligned_cols=188  Identities=11%  Similarity=0.079  Sum_probs=156.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +.+||.++.+++..||.|.|||+.+...++.|++ |.+.+.||.++++|. .|.+|+-|.+|+.||++++....  -...
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGt-klWTGGlDntvRcWDlregrqlq--qhdF  591 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQ--QHDF  591 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhh--hhhh
Confidence            4689999999999999999999999999999998 666779999999998 69999999999999998876321  2234


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ...|.++.++|++.+++.|=+++.|.+......+......|+.-|.++.|.+.|+++++.+.|+.+..|..-.+..   +
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas---i  668 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---I  668 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc---e
Confidence            5789999999999999999999999999888777777778999999999999999999999999999998877643   2


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +. ......|.+..++.+.+||+++            +.|....||.+
T Consensus       669 Fq-skE~SsVlsCDIS~ddkyIVTG------------SGdkkATVYeV  703 (705)
T KOG0639|consen  669 FQ-SKESSSVLSCDISFDDKYIVTG------------SGDKKATVYEV  703 (705)
T ss_pred             ee-ccccCcceeeeeccCceEEEec------------CCCcceEEEEE
Confidence            22 1356789999988876666665            44666555543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.55  E-value=7.8e-14  Score=140.91  Aligned_cols=196  Identities=17%  Similarity=0.216  Sum_probs=148.6

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCC-C---CcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeEEe
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPN-E---QVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVSWL   77 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-~---~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl-~t~~-~~v~~l   77 (568)
                      |+..++++.+.+.-|++||.-+|+..+.+.+.. .   ..-.+++|+|||.+ |++ +.+..|++||+ +.+. +.+...
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfa-GykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFA-GYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eee-cccceEEEeeccCCCCCCcchhh
Confidence            677889999999999999999999888776421 1   23457999999994 443 67799999999 3332 222222


Q ss_pred             -----ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 008356           78 -----KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS-NGRVVFY  149 (568)
Q Consensus        78 -----~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~-DG~V~VW  149 (568)
                           .+..+.|.|++|+| +.+.++.++....+-||.-..+.++..+ +|++.|+.++|.++|+.|.+|.. |-.|.+|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence                 23467899999999 7779999999999999988888888777 79999999999999999999874 7889999


Q ss_pred             ECCCCCCceEEEeecCCCC-CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          150 DIRGKPQPLTVLRACSSSE-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~-~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      |+|....++-.+.  .|.+ .-..|-|.-          ...+.+|++++.||.|++||++....
T Consensus       279 DiR~~~~pv~~L~--rhv~~TNQRI~FDl----------d~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  279 DIRYSRDPVYALE--RHVGDTNQRILFDL----------DPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             eehhccchhhhhh--hhccCccceEEEec----------CCCCceeeccCCCccEEEEecCCCCC
Confidence            9998877665555  4443 223344432          12445566667799999999987654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=4.9e-13  Score=134.89  Aligned_cols=168  Identities=12%  Similarity=0.167  Sum_probs=133.3

Q ss_pred             EEEEEECCCcEEEEECCCCc------e------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            8 HLASISLSGDLILHNLASGA------K------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~------~------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      .|++|+....|.-+++.-..      +      +..+. .|...|++++.+  ++ ++++|+.|-+|+|||++.... ..
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~q-lg   77 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQ-LG   77 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhh-hc
Confidence            47888888888888764222      1      22233 377889999886  45 899999999999999988764 66


Q ss_pred             EeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           76 WLKQHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~--~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      .+..|.+.|+++.|.+.-.  +|++|+.||.|.+|+.....++..+ .|.+.|+.++++|.+++.++.+.|+.+++||+-
T Consensus        78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            6778999999999998554  8999999999999999999888887 699999999999999999999999999999998


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      .++.. .+++ ..+  .-+.+.|+|.|.+++.
T Consensus       158 ~Gr~a-~v~~-L~~--~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  158 RGRVA-FVLN-LKN--KATLVSWSPQGDHFVV  185 (362)
T ss_pred             cCccc-eeec-cCC--cceeeEEcCCCCEEEE
Confidence            76432 2222 122  2344899999886553

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.54  E-value=1.2e-13  Score=150.53  Aligned_cols=175  Identities=13%  Similarity=0.103  Sum_probs=142.4

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl   87 (568)
                      .|++|+.|.+++||..  +++...+++ |...|.+++..|++  .++||+.|.+|++|.-.+   .++.+.+|.+.|+.+
T Consensus       114 ~~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~---~l~tf~gHtD~VRgL  185 (745)
T KOG0301|consen  114 TLISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSADKTIKLWKGGT---LLKTFSGHTDCVRGL  185 (745)
T ss_pred             ceEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccCcceeeeccCCc---hhhhhccchhheeee
Confidence            3899999999999986  556666776 77888899999886  599999999999998632   367899999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC
Q 008356           88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS  167 (568)
Q Consensus        88 afsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~  167 (568)
                      ++.++ ..|++|+.||.|++||+.........+|..-+.++....++..++++++|++++||+..   .+.+.+.   |.
T Consensus       186 ~vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~---lP  258 (745)
T KOG0301|consen  186 AVLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVIT---LP  258 (745)
T ss_pred             EEecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEEe---cC
Confidence            99954 46899999999999999555555556899999999988888999999999999999987   3445554   43


Q ss_pred             -CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          168 -EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       168 -~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                       ..|+++++-++|..             +.++.||.|+||-.++
T Consensus       259 ttsiWsa~~L~NgDI-------------vvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  259 TTSIWSAKVLLNGDI-------------VVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ccceEEEEEeeCCCE-------------EEeccCceEEEEEecc
Confidence             47888888876543             3344599999997764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=7.5e-14  Score=145.17  Aligned_cols=204  Identities=20%  Similarity=0.207  Sum_probs=150.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-cc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-KQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l-~~   79 (568)
                      +|+.+|..|++|+.||+++||++.+...+..... |...|.++.|+||++ +|++-+.| ..+||+.+++......- ..
T Consensus       151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            5889999999999999999999877777666665 556789999999998 88888888 99999998875322211 22


Q ss_pred             CCCCeEEEEEcCCC---CE--EEEEeCCCeEEEEECCCCce------eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           80 HSAPTAGISFSSDD---KI--IASVGLDKKLYTYDPGSRRP------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        80 H~~~VtslafsPdg---~~--LaSgs~DGtV~IWDlrt~~~------v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      .+.....+.|..+.   .+  ++....-+.|+.||+.....      ...+.....|.+++.+++|++++.|+.||.|.|
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai  307 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI  307 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence            33446667777655   22  23333455677777653221      112234568999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      |+....+.. .... ..|...|+.+.|+|+.++++.. ....+..++.-..|..+.+-.++.
T Consensus       308 ~~~~~lq~~-~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l~vd~~~~~~~~~~  366 (398)
T KOG0771|consen  308 YDAKSLQRL-QYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKLAVDKTMQLHRLPK  366 (398)
T ss_pred             EEeceeeee-Eeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEEEEeeccccccccccc
Confidence            999887432 2222 3789999999999999998875 455667777777777777665543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.53  E-value=1.6e-13  Score=149.52  Aligned_cols=204  Identities=19%  Similarity=0.274  Sum_probs=155.1

Q ss_pred             ccCCCCEEEEEECCC-----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 008356            2 YNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG-----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~---   73 (568)
                      .+|+|++||++++..     .|+||+..+...+..+.. |.-.|+.|+|+|+++ +|+++++|+++.+|........   
T Consensus       533 ~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~  610 (764)
T KOG1063|consen  533 ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFR  610 (764)
T ss_pred             ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhh
Confidence            478999999998754     599999998888888887 777888999999998 8999999999999998543321   


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cee---eEeecCCCeEEEEEec-----CCCEEEEEEcC
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPS---SCITYEAPFSSLAFID-----DDWILTAGTSN  143 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~--~~v---~~~~h~~~ItsLafsP-----dg~~LasGs~D  143 (568)
                      ....+.|...|.++.|+|++++++|++.|++|++|.....  +.+   ..+.+...|+.++|.|     .+..+++|.+.
T Consensus       611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~  690 (764)
T KOG1063|consen  611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK  690 (764)
T ss_pred             hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence            3457899999999999999999999999999999998876  333   2346888999999988     24588999999


Q ss_pred             CeEEEEECCCCCCce---------EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          144 GRVVFYDIRGKPQPL---------TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       144 G~V~VWDlrt~~~~v---------~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |.|.||......+..         ..-....|...|+.+.|.|....--.  ...+...|..++.|.+++++++.
T Consensus       691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~--~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWV--EDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccc--cccceeEEeeecccceeEEeecc
Confidence            999999865211111         11112257788999999985211000  01223346777779999998763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.53  E-value=3e-13  Score=135.05  Aligned_cols=196  Identities=18%  Similarity=0.280  Sum_probs=147.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce-eEEeeC----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKD----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~-v~~l~~----~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      |.|++..|++.. |..|.+|+++.+.. +.++..    .+....+.-+|+|..+.-.+....|+++..||+++..+....
T Consensus       131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI  209 (370)
T KOG1007|consen  131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI  209 (370)
T ss_pred             EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence            789999998776 88999999987765 444432    234456677899833222445567899999999988766666


Q ss_pred             eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECC
Q 008356           77 LKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        77 l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlr  152 (568)
                      -..|...|..++|+|+ ..+|++|+.||.|++||+|.. .++..+ .|...+.++.|+| ..++|++|+.|..|.+|...
T Consensus       210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            7789999999999994 557899999999999999964 456666 7999999999999 46789999999999999664


Q ss_pred             CCC-----------------------Cc-----eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          153 GKP-----------------------QP-----LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       153 t~~-----------------------~~-----v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      .-.                       ++     +..+.  .|...|++++|+...++           ++++-+.||.|.
T Consensus       290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPW-----------iFASLSYDGRvi  356 (370)
T KOG1007|consen  290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPW-----------IFASLSYDGRVI  356 (370)
T ss_pred             ccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCe-----------eEEEeccCceEE
Confidence            210                       00     11222  58899999999876554           455567788887


Q ss_pred             cCCCCCC
Q 008356          205 MPDPLPS  211 (568)
Q Consensus       205 VWDlr~~  211 (568)
                      |=.+.++
T Consensus       357 Is~V~r~  363 (370)
T KOG1007|consen  357 ISSVPRF  363 (370)
T ss_pred             eecCChh
Confidence            7666543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=9.4e-13  Score=128.90  Aligned_cols=205  Identities=15%  Similarity=0.179  Sum_probs=145.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC---------Cce-eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS---------GAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t---------g~~-v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +++|.+++|++|..+|.|.++.+..         ++. +...+ .|++.+..++|..+   +|++|++ |.|+-|..+..
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~   91 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEE   91 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhh
Confidence            5789999999999999999998753         222 23334 48889999999843   5666655 99999987543


Q ss_pred             Cc----e--e-EEeccC-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEE
Q 008356           71 SP----K--V-SWLKQH-----SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        71 ~~----~--v-~~l~~H-----~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~L  137 (568)
                      ..    +  . .....|     --.|+++-..|..+-|+.++.|+.++.||+++|+..+.+ +|.+.|.+++-......+
T Consensus        92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi  171 (325)
T KOG0649|consen   92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI  171 (325)
T ss_pred             hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence            21    0  0 011112     235899999998887888889999999999999999888 799999999996666778


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      ++|++||+++|||+++.+ .++++..+.|....+     | .|++|-+-  ..++..+++++ ...+.+|.+|...+...
T Consensus       172 lsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lR-----p~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~v  242 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLR-----PDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCV  242 (325)
T ss_pred             eecCCCccEEEEeccccc-eeEEeccccChhhcC-----cccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEE
Confidence            999999999999999984 456665444433211     1 23332221  11344455554 77899999998776555


Q ss_pred             ccc
Q 008356          217 VSL  219 (568)
Q Consensus       217 ~~~  219 (568)
                      +..
T Consensus       243 fpi  245 (325)
T KOG0649|consen  243 FPI  245 (325)
T ss_pred             Eec
Confidence            444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=2.9e-14  Score=162.38  Aligned_cols=195  Identities=15%  Similarity=0.261  Sum_probs=148.6

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCceeEEe-eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKD-EHLASISLSGDLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l-~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      ||+.. ++||+|+.||.|.|||+...+.-... .....+.|.+++|+..-.++|++++.+|.+.|||++.+++ +..+..
T Consensus       124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~  202 (1049)
T KOG0307|consen  124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSD  202 (1049)
T ss_pred             ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-cccccc
Confidence            67765 49999999999999999875543333 2123567899999999999999999999999999998875 444444


Q ss_pred             CCC--CeEEEEEcCC-CCEEEEEeCCC---eEEEEECCCC-ceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEE
Q 008356           80 HSA--PTAGISFSSD-DKIIASVGLDK---KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYD  150 (568)
Q Consensus        80 H~~--~VtslafsPd-g~~LaSgs~DG---tV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V~VWD  150 (568)
                      |..  .+..++|+|+ ...|+++++|.   .|.+||+|.- .+++++ .|...|.++.|++.+ .+|++++.|++|.+|+
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN  282 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN  282 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence            443  4788999994 45677776555   6999999974 466666 799999999999965 8999999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .++++ .+..+.  ....++..+.|.|....+           +...+-||.|-||.+...
T Consensus       283 ~~tgE-vl~~~p--~~~nW~fdv~w~pr~P~~-----------~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  283 PNTGE-VLGELP--AQGNWCFDVQWCPRNPSV-----------MAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCCce-EeeecC--CCCcceeeeeecCCCcch-----------hhhheeccceeeeeeecC
Confidence            99974 223333  456889999999975533           333344777777776543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.51  E-value=1.8e-12  Score=143.81  Aligned_cols=306  Identities=16%  Similarity=0.203  Sum_probs=189.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~   83 (568)
                      |-=+.+|.|..+|+|.|+|+..++.+..++. ..+.|+.+.|.-||..++++|+..|.+.+||++..+........|.+.
T Consensus       212 PaLDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s  290 (910)
T KOG1539|consen  212 PALDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS  290 (910)
T ss_pred             CcceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC
Confidence            4446789999999999999999999999994 358899999999999899999999999999998765333333345444


Q ss_pred             eEEEEEcCCCCEEEEEe-----------------------------------------------CCCeEEEEECC-----
Q 008356           84 TAGISFSSDDKIIASVG-----------------------------------------------LDKKLYTYDPG-----  111 (568)
Q Consensus        84 VtslafsPdg~~LaSgs-----------------------------------------------~DGtV~IWDlr-----  111 (568)
                      |....|.+....+++.+                                               .|++++.+++.     
T Consensus       291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~  370 (910)
T KOG1539|consen  291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS  370 (910)
T ss_pred             cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence            44444444444444444                                               44433333320     


Q ss_pred             ------------------------------------------------------------CCce-eeEeecC------CC
Q 008356          112 ------------------------------------------------------------SRRP-SSCITYE------AP  124 (568)
Q Consensus       112 ------------------------------------------------------------t~~~-v~~~~h~------~~  124 (568)
                                                                                  +... ...+.+.      ..
T Consensus       371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~  450 (910)
T KOG1539|consen  371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN  450 (910)
T ss_pred             HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcc
Confidence                                                                        0000 0001111      45


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          125 FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       125 ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      +.+++.++.|++.+.|...|.|-+|+++.+-......+...|.++|++++.+.-            +..+++++.+|-++
T Consensus       451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~------------n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT------------NRLLVSAGADGILK  518 (910)
T ss_pred             eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC------------CceEEEccCcceEE
Confidence            778889999999999999999999999987432222223479999999998764            34566667799999


Q ss_pred             cCCCCCCCccccccccccccCC----CCCcccCCCCCCccCccCCCCCCCCccc-ccC-CCCCceeeecCCCCCCcCCcc
Q 008356          205 MPDPLPSVTTSSVSLSTAVSGS----RPNSRSGPSAEASSLTVGGTGEETPQRS-YLR-PGGPLARLHAPRSSYNFKDDM  278 (568)
Q Consensus       205 VWDlr~~~~~~s~~~s~~~~~~----~sslt~sssG~~ss~~~~s~~e~tP~~~-~~~-~g~~~~~L~~~r~~~~~~dd~  278 (568)
                      +||.........+.....+...    .+.+.+...+. .++.-.  ...|--.. ..| -++.+..+.            
T Consensus       519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~vv--D~~t~kvvR~f~gh~nritd~~------------  583 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRVV--DVVTRKVVREFWGHGNRITDMT------------  583 (910)
T ss_pred             EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEEE--EchhhhhhHHhhccccceeeeE------------
Confidence            9999877755555554443331    11111111111 000000  01111111 122 223333222            


Q ss_pred             ccccccccc-----ccCCCCcccccccCcCcccccccCCCCCCccccCCCCcc-cccccCCCceeeeeecc
Q 008356          279 EVFSPLVDV-----QPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRR-FPYAEDGSNEHSVFDWK  343 (568)
Q Consensus       279 ~vfsP~~dv-----~~~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  343 (568)
                        |||  |-     ..|+ +-++.||-.+|.++|.|.+|+...++.| |++.- +.-.+.+.+...+|-=|
T Consensus       584 --FS~--DgrWlisasmD-~tIr~wDlpt~~lID~~~vd~~~~sls~-SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  584 --FSP--DGRWLISASMD-STIRTWDLPTGTLIDGLLVDSPCTSLSF-SPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             --eCC--CCcEEEEeecC-CcEEEEeccCcceeeeEecCCcceeeEE-CCCCCEEEEEEecCceEEEEEch
Confidence              555  22     1122 4599999999999999999998875556 44433 44445555555555433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.51  E-value=1.8e-13  Score=136.57  Aligned_cols=152  Identities=28%  Similarity=0.432  Sum_probs=128.3

Q ss_pred             CccC--CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNC--KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSp--dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|  ||+.+++. .|+++..||+++.++...+...|...|+.+.|+|+-+++|++|++||.|+|||.+..+.++..+.
T Consensus       177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~  255 (370)
T KOG1007|consen  177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP  255 (370)
T ss_pred             ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence            3666  67777766 58899999999999888898889999999999999999999999999999999998887899999


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------------------ce-----eeEe-ecCCCeEE
Q 008356           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR------------------------RP-----SSCI-TYEAPFSS  127 (568)
Q Consensus        79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~------------------------~~-----v~~~-~h~~~Its  127 (568)
                      +|...|.++.|+| ...+|++++.|..|.+|....-                        ++     +..+ .|++.|.+
T Consensus       256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~  335 (370)
T KOG1007|consen  256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA  335 (370)
T ss_pred             CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence            9999999999999 7788999999999999864210                        00     1122 48889999


Q ss_pred             EEEec-CCCEEEEEEcCCeEEEEECCC
Q 008356          128 LAFID-DDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       128 LafsP-dg~~LasGs~DG~V~VWDlrt  153 (568)
                      ++|+. |..++|+-+.||+|.|=.+..
T Consensus       336 ~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  336 LAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeeccCCCeeEEEeccCceEEeecCCh
Confidence            99997 566788889999999876643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.1e-13  Score=135.39  Aligned_cols=157  Identities=18%  Similarity=0.242  Sum_probs=123.2

Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe
Q 008356           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI  119 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~  119 (568)
                      ..|+.|++.|. +|+.|+.||.|.|||+.+.. ..+.+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            57789999998 89999999999999998877 46778999999999999999999999999999999999998877665


Q ss_pred             ecCCCeEEEE-----------------------------------------------EecCCCEEEEEEcCCeEEEEECC
Q 008356          120 TYEAPFSSLA-----------------------------------------------FIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus       120 ~h~~~ItsLa-----------------------------------------------fsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      ....+|..+.                                               |.+.|+++++|...|.+.+||..
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            4444333322                                               34457899999999999999998


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.+ ++..++. .....|..+.|+..|++++            ..+.|+.|+.|+++...
T Consensus       184 t~e-~vas~ri-ts~~~IK~I~~s~~g~~li------------iNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  184 TLE-CVASFRI-TSVQAIKQIIVSRKGRFLI------------INTSDRVIRTYEISDID  229 (405)
T ss_pred             hhe-eeeeeee-chheeeeEEEEeccCcEEE------------EecCCceEEEEehhhhc
Confidence            873 3333331 1235677788887655543            34559999999987443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.7e-13  Score=147.22  Aligned_cols=190  Identities=16%  Similarity=0.236  Sum_probs=141.9

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---------------
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT---------------   67 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl---------------   67 (568)
                      .|.|..|++|+.||+|+||.+.+|+++..+.  ..+.|.||+|+|.+...++++.....+.|-+-               
T Consensus       409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell  486 (733)
T KOG0650|consen  409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL  486 (733)
T ss_pred             cCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence            5789999999999999999999999999887  56799999999987654544444444444432               


Q ss_pred             ------------------CC---CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc---------
Q 008356           68 ------------------TG---RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRR---------  114 (568)
Q Consensus        68 ------------------~t---~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~---------  114 (568)
                                        ..   .+.-++....|...|+.|.|+..|.||+++..++   .|.|+++....         
T Consensus       487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk  566 (733)
T KOG0650|consen  487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK  566 (733)
T ss_pred             hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC
Confidence                              10   0001234456888899999999999999887543   67787774321         


Q ss_pred             --eeeE------------------------------e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356          115 --PSSC------------------------------I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus       115 --~v~~------------------------------~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                        ++..                              + .....|..++++|.|..|++|+.|+.+..||+.-..++.+.+
T Consensus       567 G~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l  646 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL  646 (733)
T ss_pred             CceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence              1110                              0 123457789999999999999999999999999888888888


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +  .|...|++|+||+.-+.++++            +.|+.+.||.-
T Consensus       647 r--~H~~avr~Va~H~ryPLfas~------------sdDgtv~Vfhg  679 (733)
T KOG0650|consen  647 R--LHEKAVRSVAFHKRYPLFASG------------SDDGTVIVFHG  679 (733)
T ss_pred             h--hhhhhhhhhhhccccceeeee------------cCCCcEEEEee
Confidence            8  789999999999965555554            55777777753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.50  E-value=2.3e-12  Score=136.39  Aligned_cols=173  Identities=15%  Similarity=0.274  Sum_probs=142.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--------   73 (568)
                      |.++|+ +++|..+|.|.||+..+.+..+... .|.+.|.+++...+|.  |++|+.|+.|..||-.-.+..        
T Consensus       254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~  329 (626)
T KOG2106|consen  254 FLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQF  329 (626)
T ss_pred             EcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhc
Confidence            566665 6789999999999998888777777 5888899999999986  677999999999994211100        


Q ss_pred             -------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC
Q 008356           74 -------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE  122 (568)
Q Consensus        74 -------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~  122 (568)
                                                     .....+|.+....++.+|+.+.+++++.|+.|++|+  ..+++......
T Consensus       330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~  407 (626)
T KOG2106|consen  330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE  407 (626)
T ss_pred             CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence                                           113456888889999999999999999999999999  66677777788


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       123 ~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .++.|+.|+|.| .+++|...|...|.|.++. ..+.+..   ...++++++|+|+|.+|+.+
T Consensus       408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~---d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT---DNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe---cCCceEEEEEcCCCCEEEEe
Confidence            999999999999 9999999999999999985 3333333   37899999999999888877

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.6e-13  Score=140.64  Aligned_cols=170  Identities=18%  Similarity=0.251  Sum_probs=134.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC---------CceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~t---------g~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      |+-||.+|++|+.||.|.+|.+.+         -+..+.+.. |.-.|+++....-+ +..+++++.|.++++||+..+.
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            678999999999999999998642         234555654 77888988887652 3379999999999999998886


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------eeeEe-ecCC--CeEEEEEec
Q 008356           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------PSSCI-TYEA--PFSSLAFID  132 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~----------------~v~~~-~h~~--~ItsLafsP  132 (568)
                      .+  .-...+..+++++.+|-++.++.|+.+|.|.+.++..-.                .+..+ +|.+  .|+|++++-
T Consensus       210 LL--lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~  287 (476)
T KOG0646|consen  210 LL--LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST  287 (476)
T ss_pred             ee--EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence            32  233456789999999999999999999999998875422                11222 4666  899999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       133 dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ||..|++|+.||.|+|||+... ++++.+.  ...++|+.+.+.|
T Consensus       288 DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~--~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  288 DGTLLLSGDEDGKVCVWDIYSK-QCIRTLQ--TSKGPVTNLQINP  329 (476)
T ss_pred             CccEEEeeCCCCCEEEEecchH-HHHHHHh--hhccccceeEeec
Confidence            9999999999999999999987 4444443  2458899999876

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.49  E-value=4.3e-13  Score=146.14  Aligned_cols=195  Identities=13%  Similarity=0.175  Sum_probs=145.9

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEee------------------------------------CCCCCcEEEEEEccCCCe
Q 008356            8 HLASISLSGDLILHNLASGAKAAELK------------------------------------DPNEQVLRVLDYSRNSRH   51 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~------------------------------------~~h~~~Vs~Lafspdg~~   51 (568)
                      .+++++.|++|++||++.+..-..+.                                    ....-.+++++.+|+++ 
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-  472 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-  472 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-
Confidence            47899999999999987522100000                                    01233589999999998 


Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ec-----
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TY-----  121 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h-----  121 (568)
                      .|++|..-|.++|||+...+. ...+..|...|.|+.|+.   ..++|++++.|+-|++||+...- ++..+ .|     
T Consensus       473 hLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT  551 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT  551 (1080)
T ss_pred             eecccCccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence            699999999999999988763 667889999999999985   45789999999999999984321 11111 11     


Q ss_pred             --------------------------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356          122 --------------------------------------------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus       122 --------------------------------------------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                                                                  +..+..++..|..+++++++.|+.|+|||+..+++.
T Consensus       552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~  631 (1080)
T KOG1408|consen  552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV  631 (1080)
T ss_pred             EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence                                                        223567777888899999999999999999998654


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      .......+|.+....+..+|.|.|++            +.+.|+++.++|.-...+...
T Consensus       632 k~FKgs~~~eG~lIKv~lDPSgiY~a------------tScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  632 KSFKGSRDHEGDLIKVILDPSGIYLA------------TSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             eeecccccCCCceEEEEECCCccEEE------------EeecCCceEEEEeccchhhhh
Confidence            44334457878888899999665554            446699999999876665443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.48  E-value=7.4e-13  Score=133.92  Aligned_cols=181  Identities=14%  Similarity=0.256  Sum_probs=140.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEEC-CCCceeE---Eee---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 008356            1 MYNCKDEHLASISLSGDLILHNL-ASGAKAA---ELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl-~tg~~v~---~l~---~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~   73 (568)
                      +|+|||.+|++| ....|+|||+ +.|+...   ++.   ....+.|.+++|+|.....++.|+.-..+-||.-....+ 
T Consensus       165 ~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-  242 (406)
T KOG2919|consen  165 QFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-  242 (406)
T ss_pred             EecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-
Confidence            489999999876 5678999998 4554321   111   124678999999998877899999999999998877774 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC-ceeeEe-ecCC-CeEE--EEEecCCCEEEEEEcCCeEE
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR-RPSSCI-TYEA-PFSS--LAFIDDDWILTAGTSNGRVV  147 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~-~~v~~~-~h~~-~Its--LafsPdg~~LasGs~DG~V~  147 (568)
                      ...+.+|.+.|+.++|.++|+.|++|. .|.+|.+||+|.- .++..+ .|.. .-..  ....|++++|++|+.||.|+
T Consensus       243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence            677889999999999999999999998 4778999999974 344333 3332 2223  44567899999999999999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +||++....++..+.  .|...|+.++++|--++++++
T Consensus       323 vwdlk~~gn~~sv~~--~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  323 VWDLKDLGNEVSVTG--NYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             EEecCCCCCcccccc--cccccccceecCcccceeeec
Confidence            999998555555554  688999999999976666665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.48  E-value=9.8e-12  Score=125.91  Aligned_cols=192  Identities=23%  Similarity=0.382  Sum_probs=148.0

Q ss_pred             cCCCC-EEEEEEC-CCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 008356            3 NCKDE-HLASISL-SGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         3 SpdG~-~LasGs~-DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-DGtV~VWDl~t~~~~v~~l~   78 (568)
                      ++++. +++..+. |+.+.+|+... ......+.. |...|.+++|++++. .++.++. |+.+++|++.... .+..+.
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~  195 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-PLSTLA  195 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc-eEEeec
Confidence            45565 4444444 89999999987 666667775 777888999999998 6777775 9999999998754 366777


Q ss_pred             cCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceee-Ee-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           79 QHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        79 ~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~-~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .|...|.+++|+|++. .+++++.|+.|++||...+..+. .+ .|.... ...|++++.++++++.|+.+++||++...
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            8999999999999887 55666999999999999777766 34 455554 33899999899999999999999999775


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .....+  ..|...|.++.|.|++..+++            ++.|+.+++||.....
T Consensus       275 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~------------~~~d~~~~~~~~~~~~  317 (466)
T COG2319         275 SLLRTL--SGHSSSVLSVAFSPDGKLLAS------------GSSDGTVRLWDLETGK  317 (466)
T ss_pred             cEEEEE--ecCCccEEEEEECCCCCEEEE------------eeCCCcEEEEEcCCCc
Confidence            523333  478899999999986444433            4446778888776544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.47  E-value=4.1e-13  Score=140.73  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=136.6

Q ss_pred             CCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 008356           36 NEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP  110 (568)
Q Consensus        36 h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~---~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDl  110 (568)
                      +.+.|.+++|+|... .++++|..-|+|-+||+.+.+   ..+..+..|..+|.++.|+| +...|++.+.||+|++-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            667899999999876 789999999999999995332   33667889999999999999 8889999999999999999


Q ss_pred             CCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          111 GSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       111 rt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      +.......+   .....+..+.|+.+...++.+..=|...+||+|+.......+.  -|...|+.|+++|..+       
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~--lh~kKI~sv~~NP~~p-------  335 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR--LHKKKITSVALNPVCP-------  335 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh--hhhcccceeecCCCCc-------
Confidence            876433222   2345678888988888888888878999999999865444444  5778999999999743       


Q ss_pred             CCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          188 CKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       188 ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                          .++++++.|++++|||+|......+
T Consensus       336 ----~~laT~s~D~T~kIWD~R~l~~K~s  360 (498)
T KOG4328|consen  336 ----WFLATASLDQTAKIWDLRQLRGKAS  360 (498)
T ss_pred             ----hheeecccCcceeeeehhhhcCCCC
Confidence                4567778899999999998776554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.2e-12  Score=140.14  Aligned_cols=195  Identities=16%  Similarity=0.191  Sum_probs=153.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--   70 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t--------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~--   70 (568)
                      +|++..-.|++++.||+|.+|+++.        -+.+.+|++ |.++|-|+++..++. .+++|+.||+|+.|++..+  
T Consensus       301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~d  378 (577)
T KOG0642|consen  301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQD  378 (577)
T ss_pred             hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCce-EEEeeccCceeeeeccCCCCC
Confidence            3677778899999999999999932        135677887 788899999999998 7999999999999976321  


Q ss_pred             -------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--------------------------
Q 008356           71 -------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--------------------------  117 (568)
Q Consensus        71 -------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~--------------------------  117 (568)
                             .....++.+|.+.|+.++++.....|++|+.||+|+.|+.....+..                          
T Consensus       379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s  458 (577)
T KOG0642|consen  379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS  458 (577)
T ss_pred             cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence                   12356788999999999999988889999999999999975543300                          


Q ss_pred             ------------------Eee--------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee
Q 008356          118 ------------------CIT--------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS  171 (568)
Q Consensus       118 ------------------~~~--------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~Vt  171 (568)
                                        ++.        ....+..+.++|.+.+.+++..|+.|+++|..++.....+.   .|...++
T Consensus       459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svt  535 (577)
T KOG0642|consen  459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AHKDSVT  535 (577)
T ss_pred             cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee---eccceec
Confidence                              000        01336678888889999999999999999999885333332   6889999


Q ss_pred             EEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          172 SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       172 sLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++++.|+|.++.++            +.|+.+++|.+..-.
T Consensus       536 slai~~ng~~l~s~------------s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  536 SLAIDPNGPYLMSG------------SHDGSVRLWKLDVKT  564 (577)
T ss_pred             ceeecCCCceEEee------------cCCceeehhhccchh
Confidence            99999987666555            569999999875433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.47  E-value=9.9e-14  Score=141.85  Aligned_cols=150  Identities=15%  Similarity=0.218  Sum_probs=127.3

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |||.. ..|++++.|+.|.|||+.++..+..+.  ..-..+.|+|+|+.- .|++|.+|..++.||++.....+....+|
T Consensus       195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             cCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCcccc-ceeeccccccceehhhhhhcccchhhccc
Confidence            67765 467777899999999999988877665  234456799999654 79999999999999999887778889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ...|.+++|+|.|+.|++|+.|.+|+||..+.+....+.  ..-..|.|+.|+-|.+++++|+.|+.|++|..+..
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            999999999999999999999999999999887654333  23456999999999999999999999999987754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.47  E-value=2.4e-12  Score=136.21  Aligned_cols=143  Identities=17%  Similarity=0.372  Sum_probs=119.6

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      |.+....++..|+.+ ++++++.|+.|++|+  ..+  ..+-+.-..++.|++|+|.+ .++.|...|...+.|.++...
T Consensus       367 h~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k--~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  367 HGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHK--LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL  440 (626)
T ss_pred             cccceeeEEcCCChh-heeeccCcceEEEcc--CCc--eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccccee
Confidence            444566788888876 799999999999999  333  45556667889999999998 999999999999999999877


Q ss_pred             eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          116 SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       116 v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +.......++++++|+|+|.+||+|+.|+.|+||-+.........+... |..+|+.+.|++|++++.+.
T Consensus       441 v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  441 VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-cCceeEEeeecCCCceEEec
Confidence            7777778999999999999999999999999999998766555554432 44899999999988777665

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.45  E-value=7.5e-13  Score=137.15  Aligned_cols=150  Identities=15%  Similarity=0.249  Sum_probs=124.8

Q ss_pred             ccCCCC-EEEEEECCCcEEEEECCCCce---------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---
Q 008356            2 YNCKDE-HLASISLSGDLILHNLASGAK---------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---   68 (568)
Q Consensus         2 fSpdG~-~LasGs~DG~V~VWDl~tg~~---------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---   68 (568)
                      |.++.. .|++|+.|..|+||.++.+..         +..+. +|...|+++.|+|+|+ +|++|+++|.|.+|...   
T Consensus        21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~   98 (434)
T KOG1009|consen   21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVR   98 (434)
T ss_pred             eccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcC
Confidence            344444 899999999999998864321         12233 5788899999999998 99999999999999875   


Q ss_pred             -----C-----C--CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC
Q 008356           69 -----G-----R--SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW  135 (568)
Q Consensus        69 -----t-----~--~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~  135 (568)
                           +     .  -.....+.+|...|+.++|+|+++++++++.|..+++||+..|+..... .|...+..++|.|.++
T Consensus        99 ~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen   99 IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence                 2     1  0124567789999999999999999999999999999999999988887 6999999999999999


Q ss_pred             EEEEEEcCCeEEEEECCC
Q 008356          136 ILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       136 ~LasGs~DG~V~VWDlrt  153 (568)
                      ++++-+.|...+++++..
T Consensus       179 yv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  179 YVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             hhhhhccCcccceeeeee
Confidence            999998888777776654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=4.4e-12  Score=138.20  Aligned_cols=178  Identities=18%  Similarity=0.211  Sum_probs=141.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~   79 (568)
                      +|. ++.+|.+.+.+|.|.-||+.+++....+.. ..+.|..++.+|.+. .++.|++||.++.++....... .+.+..
T Consensus        76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             EEc-cCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccc
Confidence            355 566788888999999999999999888885 778999999999987 7999999997777777655422 234455


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-----c----CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----Y----EAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-----h----~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      .+++|.++.|+|++..|+.|+.||.|++||...+..+..+.     .    ..-|+++.|-.+ ..|++|...|.|.+||
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence            67899999999999999999999999999999988776331     1    123667777755 5789999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ...+. .++...  .|.+.|.+++..+++..++++
T Consensus       232 ~~~gT-LiqS~~--~h~adVl~Lav~~~~d~vfsa  263 (691)
T KOG2048|consen  232 SIFGT-LIQSHS--CHDADVLALAVADNEDRVFSA  263 (691)
T ss_pred             ccCcc-hhhhhh--hhhcceeEEEEcCCCCeEEEc
Confidence            98874 233333  588999999999876666655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1e-11  Score=125.09  Aligned_cols=189  Identities=13%  Similarity=0.220  Sum_probs=134.9

Q ss_pred             CCEEEEEECCCcEEEEECCC---------CceeEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce--
Q 008356            6 DEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK--   73 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~t---------g~~v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~--   73 (568)
                      |+.+|+++.|++|.||.-..         ......+.. ....|.+|+|.|..- -.|++++.||+||||+....-..  
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            78999999999999997421         113344543 567889999998632 25889999999999997443211  


Q ss_pred             ---eEEe-------ccCCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEECCCCc-e---eeEe-ecCCCeEEEEE
Q 008356           74 ---VSWL-------KQHSAPTAGISFSS---DDKIIASVGLD-----KKLYTYDPGSRR-P---SSCI-TYEAPFSSLAF  130 (568)
Q Consensus        74 ---v~~l-------~~H~~~VtslafsP---dg~~LaSgs~D-----GtV~IWDlrt~~-~---v~~~-~h~~~ItsLaf  130 (568)
                         ...+       ..+..+..|+.|+|   ...+|+.|+.+     +.++||....+. .   +..+ .|..+|+.++|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence               1112       24667889999998   44567777755     378888765432 2   2222 68999999999


Q ss_pred             ecC----CCEEEEEEcCCeEEEEECCCCC----------------CceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCC
Q 008356          131 IDD----DWILTAGTSNGRVVFYDIRGKP----------------QPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCK  189 (568)
Q Consensus       131 sPd----g~~LasGs~DG~V~VWDlrt~~----------------~~v~~l~-~~~h~~~VtsLafspdg~~Las~s~ss  189 (568)
                      .|+    -.+||+++.|| |+||.++...                -+++.+. .-+|.+.|..+.|+-.|          
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG----------  300 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG----------  300 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee----------
Confidence            996    36799999999 9999998311                1223333 33799999999998744          


Q ss_pred             CCeEEEEecCCCcEEcCCC
Q 008356          190 AETALLGGAVGDSILMPDP  208 (568)
Q Consensus       190 d~~~Lls~s~Dg~V~VWDl  208 (568)
                        .+|.+.+.||+|++|..
T Consensus       301 --tiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  301 --TILSSTGDDGCVRLWKA  317 (361)
T ss_pred             --eEEeecCCCceeeehhh
Confidence              45666677999999974

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.43  E-value=3.8e-11  Score=121.57  Aligned_cols=196  Identities=26%  Similarity=0.401  Sum_probs=149.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEE-ccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Laf-spdg~~lLaTgs~-DGtV~VWDl~t~~~~v~~l~   78 (568)
                      |.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+. |+.+++||..........+.
T Consensus        73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  152 (466)
T COG2319          73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE  152 (466)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence            56778888889899999999998776 666666533335666676 6776634554444 99999999987233477889


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCC
Q 008356           79 QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~-~LasGs~DG~V~VWDlrt~~  155 (568)
                      .|...|.++.|+|++.+++.++. |+.+++|++..+..+..+ .|...+.+++|+|++. +++.++.|+.|++||.....
T Consensus       153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence            99999999999999998888885 999999999987777666 4789999999999988 55555899999999888542


Q ss_pred             CceE-EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          156 QPLT-VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       156 ~~v~-~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       ... .+.  .|...+ -..|++++            ..+++++.|+.+++||++....
T Consensus       233 -~~~~~~~--~~~~~~-~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         233 -LLRSTLS--GHSDSV-VSSFSPDG------------SLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             -EEeeecC--CCCcce-eEeECCCC------------CEEEEecCCCcEEEeeecCCCc
Confidence             222 233  566664 33788864            3344567799999999986554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=9.8e-12  Score=121.27  Aligned_cols=148  Identities=16%  Similarity=0.290  Sum_probs=109.8

Q ss_pred             ccCCCCEEEEEEC----------CCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCC
Q 008356            2 YNCKDEHLASISL----------SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTG   69 (568)
Q Consensus         2 fSpdG~~LasGs~----------DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaT-gs~DGtV~VWDl~t   69 (568)
                      |+++|++|++-..          -|...||.++ .+..+..+.-...+.|.+++|+|+++.++++ |..++.|.+||++.
T Consensus        13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~   92 (194)
T PF08662_consen   13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG   92 (194)
T ss_pred             ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence            8899988775433          1345566653 3334455544345579999999999865444 44678999999973


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc----
Q 008356           70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS----  142 (568)
Q Consensus        70 ~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~---DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~----  142 (568)
                      ..  +..+  +...++.+.|+|+|++|++++.   .|.|.+||+++.+.+....|.. +..++|+|+|++|+++..    
T Consensus        93 ~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen   93 KK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             cE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccce
Confidence            32  3333  3567899999999999999874   4679999999888887776654 789999999999999875    


Q ss_pred             --CCeEEEEECCCC
Q 008356          143 --NGRVVFYDIRGK  154 (568)
Q Consensus       143 --DG~V~VWDlrt~  154 (568)
                        |+.++||+..+.
T Consensus       168 ~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  168 RVDNGFKIWSFQGR  181 (194)
T ss_pred             eccccEEEEEecCe
Confidence              677999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.9e-11  Score=130.63  Aligned_cols=177  Identities=15%  Similarity=0.203  Sum_probs=126.2

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~   75 (568)
                      +|+|||+.|+..+.+   ..|++||+.+++... +.. ......++.|+|+|+.++++.+.+|  .|++||+.++.  ..
T Consensus       210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~  285 (433)
T PRK04922        210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LT  285 (433)
T ss_pred             cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eE
Confidence            489999999987643   469999998876543 222 2334456899999997777777666  59999998776  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG---~V~VW  149 (568)
                      .+..+......++|+||+++|+.++. ++  .|+++|+.+++.............++|+|+|++|+....++   .|.+|
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~  365 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM  365 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence            56666666678999999998887764 44  47788887776544433444455789999999998876443   59999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      |+.+.. . ..+.   +........|+|+|++++...
T Consensus       366 d~~~g~-~-~~Lt---~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        366 DLSTGS-V-RTLT---PGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             ECCCCC-e-EECC---CCCCCCCceECCCCCEEEEEE
Confidence            998763 2 2332   223455679999998876653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.3e-11  Score=131.12  Aligned_cols=187  Identities=17%  Similarity=0.169  Sum_probs=125.8

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeE
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl--~t~~~~v~   75 (568)
                      +|+|||+.|+..+.+   ..|++||+.+++.... .. ..+.+....|+|+|+.++++.+.+|...||.+  .++.  ..
T Consensus       202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~  277 (427)
T PRK02889        202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LR  277 (427)
T ss_pred             eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--cE
Confidence            489999999887643   3599999988875433 22 23445678999999976677888887666655  4443  44


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTY--DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IW--Dlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG---~V~VW  149 (568)
                      .+..+...+....|+||+++|+..+. ++...+|  |+.+++..............+|+|||++|+..+.++   .|.+|
T Consensus       278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~  357 (427)
T PRK02889        278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ  357 (427)
T ss_pred             ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            55556666778899999998887664 4444444  555555433333333455688999999998877654   69999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG  196 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls  196 (568)
                      |+.+...  ..+.   .......+.|+|+|+.|+......+...+..
T Consensus       358 d~~~g~~--~~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        358 DLATGQV--TALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             ECCCCCe--EEcc---CCCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence            9987632  2332   1233467899999998877654333333333

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.41  E-value=4.8e-12  Score=126.60  Aligned_cols=180  Identities=14%  Similarity=0.290  Sum_probs=137.4

Q ss_pred             CCCEEEEEECCCcEEEEECCCCce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--c
Q 008356            5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--Q   79 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~--~   79 (568)
                      +-++|.+.+-|-+..|||++++..   ..++.+ |+..|.+|+|...+..+|++.+.||.|++||++..+--.....  .
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEe-cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            347899999999999999998733   344554 8888999999998888999999999999999987652211111  1


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCC-eEEEEECCCC-ceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 008356           80 HSAPTAGISFSS-DDKIIASVGLDK-KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        80 H~~~VtslafsP-dg~~LaSgs~DG-tV~IWDlrt~-~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~  154 (568)
                      ...+...++|++ |.+++++-..|. .|.|.|+|.. .++..+ .|.+.|+.++|.|. ...|++++.|..+.+||+...
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            246788999999 778888877655 7999999975 345555 79999999999996 578999999999999999875


Q ss_pred             CC-ce-EEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 008356          155 PQ-PL-TVLRACSSSEAVSSLCWQR-AKPVFIDE  185 (568)
Q Consensus       155 ~~-~v-~~l~~~~h~~~VtsLafsp-dg~~Las~  185 (568)
                      .+ .. .-+-.+.-.+.|+.+.|++ ...+++.+
T Consensus       321 ~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  321 PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             cccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence            33 11 1111123567899999996 45666666

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.41  E-value=2.8e-12  Score=138.33  Aligned_cols=198  Identities=22%  Similarity=0.278  Sum_probs=148.7

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 008356            2 YNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~   73 (568)
                      |+| |.++||+++.||.|+||.+..+.       ....+.. |.+.|+.+.|+|-...+|++++.|-+|++||+.+... 
T Consensus       635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-  712 (1012)
T KOG1445|consen  635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-  712 (1012)
T ss_pred             cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-
Confidence            555 56789999999999999987543       3445665 7788999999998777999999999999999988873 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe--ecCCCeEEEEEecCCCEEEEEEcCC----eE
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI--TYEAPFSSLAFIDDDWILTAGTSNG----RV  146 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~--~h~~~ItsLafsPdg~~LasGs~DG----~V  146 (568)
                      ...+.+|.+.|.+++|+|+|+.+++.+.||+|++|+.+.++ ++..-  .....--.+.|.-+|+++++.+.|.    .|
T Consensus       713 ~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv  792 (1012)
T KOG1445|consen  713 YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQV  792 (1012)
T ss_pred             hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhh
Confidence            56789999999999999999999999999999999998764 33332  1234455678888999998877654    58


Q ss_pred             EEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          147 VFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       147 ~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .+||.++-. .++.          +..+...|.  .|+-..+-+.+.+++++-.|..|.+|++..-.+
T Consensus       793 ~~Y~Aq~l~~~pl~----------t~~lDvaps--~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  793 QMYDAQTLDLRPLY----------TQVLDVAPS--PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             hhhhhhhccCCcce----------eeeecccCc--cccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            889877532 1111          122233331  223223444667888888899999999876443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=1.8e-11  Score=119.48  Aligned_cols=155  Identities=17%  Similarity=0.266  Sum_probs=109.9

Q ss_pred             EEEEccCCCeEEEEEeC---------CCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEEE
Q 008356           42 VLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASV--GLDKKLYTYD  109 (568)
Q Consensus        42 ~Lafspdg~~lLaTgs~---------DGtV~VWDl~t~~~~v~~l~~-H~~~VtslafsPdg~~LaSg--s~DGtV~IWD  109 (568)
                      .+.|+++|+.+++....         -+...||.++.....+..+.- ..++|.+++|+|+++.|+++  ..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            37899999877766652         234666666444333444433 34579999999999987655  3567999999


Q ss_pred             CCCCceeeEeecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          110 PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       110 lrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      ++ ++.+..+. ...+..+.|+|+|++|++++.   .|.|.+||++..+    .+....|. .++.++|+|+|++++++.
T Consensus        90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~~~-~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFEHS-DATDVEWSPDGRYLATAT  162 (194)
T ss_pred             Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----EeeccccC-cEEEEEEcCCCCEEEEEE
Confidence            97 55555553 567889999999999999874   4679999999652    23333344 478999999999999873


Q ss_pred             cCCCCeEEEEecCCCcEEcCCCC
Q 008356          187 TCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ...      --..|..++||+..
T Consensus       163 t~~------r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  163 TSP------RLRVDNGFKIWSFQ  179 (194)
T ss_pred             ecc------ceeccccEEEEEec
Confidence            321      11248889999863

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.2e-11  Score=126.81  Aligned_cols=198  Identities=15%  Similarity=0.208  Sum_probs=150.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------   72 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--------   72 (568)
                      +||+.-..+|++..|-.|++||-.. ++...++......|.|++|-|.+...|+.|+..| |.+|.......        
T Consensus       105 aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~  182 (445)
T KOG2139|consen  105 AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMM  182 (445)
T ss_pred             eechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccc
Confidence            4666555678899999999999655 6667777656778999999999887888888755 88998743211        


Q ss_pred             -----eeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           73 -----KVSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        73 -----~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                           .+..-.+| .+|+++.|++|+..+++++ .|..|.|||..++..+... ...+.+.-+.|+||+.+|.++.-|+.
T Consensus       183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav  261 (445)
T KOG2139|consen  183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV  261 (445)
T ss_pred             cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence                 12223344 6799999999999999998 5668999999999887776 56678999999999999999999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW  206 (568)
                      .++|+........+..   -..+.|...+|+|+|++|+..  +.++..+++..-++.--+.
T Consensus       262 frlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~--~sgsp~lysl~f~~~~~~~  317 (445)
T KOG2139|consen  262 FRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFA--CSGSPRLYSLTFDGEDSVF  317 (445)
T ss_pred             eeeehhcccceeccee---ccCCceeeeeecCCCCEEEEE--EcCCceEEEEeecCCCccc
Confidence            9999766543222222   345689999999999998766  3466666666655544333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=7.6e-11  Score=128.38  Aligned_cols=178  Identities=13%  Similarity=0.140  Sum_probs=123.5

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~---DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~   75 (568)
                      +|+|||+.|+..+.   +..|++|++.+++......  ....+..++|+|+|+.++++...+|  .|++||+.++.  ..
T Consensus       205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~~  280 (429)
T PRK03629        205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR  280 (429)
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EE
Confidence            48999999987643   3579999998876433221  2223445899999996666666665  48899998776  34


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~D-G--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW  149 (568)
                      .+..+...+....|+||++.|+.++.+ +  .|+++|+.+++..............+|+|||++|+....+   ..|.+|
T Consensus       281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~  360 (429)
T PRK03629        281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  360 (429)
T ss_pred             EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence            455555678899999999998877754 3  5666688777654444444456778999999999886643   358889


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      |+.+..  ...+..   ........|+|||++|+..+.
T Consensus       361 dl~~g~--~~~Lt~---~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        361 DLATGG--VQVLTD---TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             ECCCCC--eEEeCC---CCCCCCceECCCCCEEEEEEc
Confidence            998763  233331   122346789999988877643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.38  E-value=4.9e-12  Score=134.63  Aligned_cols=189  Identities=15%  Similarity=0.230  Sum_probs=144.2

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG   86 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vts   86 (568)
                      +.|+.++.||.+.|.+ ..++....+.. |.+.+.+-.|+++|. -|+++++||.|++|.-.+.-  ...+......|+|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c  150 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC  150 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence            5688899999999988 46776667776 777888899999998 69999999999999976543  3455667788999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCC-CceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 008356           87 ISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS  165 (568)
Q Consensus        87 lafsPdg~~LaSgs~DGtV~IWDlrt-~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~  165 (568)
                      ++|.|+.+.++.|..+. +.|=-+.- .++++...|++-|.++.|++..+++++|++|-+.+|||-...    ..+....
T Consensus       151 ~~W~p~S~~vl~c~g~h-~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----~Lf~S~~  225 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGGH-ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----NLFTSAA  225 (737)
T ss_pred             EEECCCCCceEEecCCe-EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----ccccCCh
Confidence            99999887777765443 55555543 345555689999999999999999999999999999998775    2344457


Q ss_pred             CCCCeeEEEEccCCCeEEE-----------------eccCCCCeEEEEecCCCcEEc
Q 008356          166 SSEAVSSLCWQRAKPVFID-----------------ETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       166 h~~~VtsLafspdg~~Las-----------------~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      |..+|++++|+|+..|++.                 -+++.|+..+.+++..|.|.+
T Consensus       226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  226 EEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             hccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            8889999999998554431                 124556666666665555543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.38  E-value=5.9e-12  Score=134.01  Aligned_cols=178  Identities=17%  Similarity=0.234  Sum_probs=136.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |||||.-|+++|.||.|++|. ++|-+...+. .....|+|++|.|+..+++++.+  +.+.|=-+.-+. .+..++.|.
T Consensus       112 W~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~-k~i~WkAHD  186 (737)
T KOG1524|consen  112 WSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS-KIIRWRAHD  186 (737)
T ss_pred             cCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEecC--CeEEEeeccccc-ceeEEeccC
Confidence            899999999999999999999 4565444443 36788999999999988777655  445555555444 366789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      +-|.++.|++..++|++|++|-..++||-........-.|+.+|++++|+|+ ..+++++. +.+++   ..        
T Consensus       187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~--------  253 (737)
T KOG1524|consen  187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SS--------  253 (737)
T ss_pred             cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeee---cC--------
Confidence            9999999999999999999999999999775555455579999999999999 66666664 23331   11        


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCc
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS  202 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~  202 (568)
                         ...+.|..++|++||..++++  +..+.++++-.-+..
T Consensus       254 ---p~~GSifnlsWS~DGTQ~a~g--t~~G~v~~A~~ieq~  289 (737)
T KOG1524|consen  254 ---PRVGSIFNLSWSADGTQATCG--TSTGQLIVAYAIEQQ  289 (737)
T ss_pred             ---CCccceEEEEEcCCCceeecc--ccCceEEEeeeehhh
Confidence               245779999999999998877  345555555444443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=9.3e-11  Score=127.72  Aligned_cols=176  Identities=14%  Similarity=0.168  Sum_probs=128.7

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~---DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~   75 (568)
                      +|+|||+.|+..+.   +..|++||+.+++.. .+.. ..+.+...+|+|+|++++++.+.++.  |++||+.++.  ..
T Consensus       208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~  283 (435)
T PRK05137        208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT  283 (435)
T ss_pred             EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE
Confidence            48999999988764   468999999888654 3332 34456678999999977777777765  7777887765  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW  149 (568)
                      .+..+........|+||++.|+..+. ++  .|++||+..++..........+....|+|+|++|+....+   ..|.+|
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~  363 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM  363 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence            56667777788999999999887764 33  6889998877665554455567778999999999887643   368889


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      |+.+..  ...+.   ....+..+.|+|+|+.|+..
T Consensus       364 d~~~~~--~~~lt---~~~~~~~p~~spDG~~i~~~  394 (435)
T PRK05137        364 KPDGSG--ERILT---SGFLVEGPTWAPNGRVIMFF  394 (435)
T ss_pred             ECCCCc--eEecc---CCCCCCCCeECCCCCEEEEE
Confidence            986553  23332   22346788999998887665

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.38  E-value=1.5e-10  Score=120.98  Aligned_cols=197  Identities=9%  Similarity=0.031  Sum_probs=129.0

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECC-CCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 008356            1 MYNCKDEHLASIS-LSGDLILHNLA-SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K   73 (568)
Q Consensus         1 afSpdG~~LasGs-~DG~V~VWDl~-tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~   73 (568)
                      +++|++++|++++ .++.|.+|++. +++.  +....  .......+.|+|+++.++++...++.|.+||++....   .
T Consensus        41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~  118 (330)
T PRK11028         41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP  118 (330)
T ss_pred             EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence            3789999987765 47889999986 3432  22222  2234467999999985444444689999999964321   1


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceee-------EeecCCCeEEEEEecCCCEEEEEEc-CC
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-------CITYEAPFSSLAFIDDDWILTAGTS-NG  144 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~-------~~~h~~~ItsLafsPdg~~LasGs~-DG  144 (568)
                      +..+ .+...+.+++++|+++++++++ .++.|.+||+.+...+.       ..........++|+|++++|+++.. ++
T Consensus       119 ~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~  197 (330)
T PRK11028        119 IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS  197 (330)
T ss_pred             eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence            2222 2334567889999999886555 66899999997633221       1223455778999999999988876 89


Q ss_pred             eEEEEECCCCCCceEE---Eeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          145 RVVFYDIRGKPQPLTV---LRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~---l~~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .|.+||++.....++.   +...    .+......+.++|++++++++           ...++.|.+|++...
T Consensus       198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-----------~~~~~~I~v~~i~~~  260 (330)
T PRK11028        198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-----------DRTASLISVFSVSED  260 (330)
T ss_pred             EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-----------cCCCCeEEEEEEeCC
Confidence            9999999742111222   2111    112233468889987766554           234678888887543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=1.6e-10  Score=124.11  Aligned_cols=179  Identities=18%  Similarity=0.222  Sum_probs=128.7

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~   75 (568)
                      +|+|||++|+.+..+   ..|++||+.+++......  +...+.+++|+|+++.++++...++  .|++||+.++.  ..
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~  271 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LT  271 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC--EE
Confidence            489999999987654   479999998886543322  3345566899999986666666555  58888987765  44


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~D-G--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG---~V~VW  149 (568)
                      .+..+........|+|++++|+.++.. +  .|+++|+.+++......+...+..+.|+|+|++|+....++   .|.+|
T Consensus       272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~  351 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM  351 (417)
T ss_pred             ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence            455565556678999999988776643 2  68889998877655545566678889999999999988776   79999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTC  188 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~s  188 (568)
                      |+.+..  ...+.   .........|+|+|++|+.....
T Consensus       352 d~~~~~--~~~l~---~~~~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       352 DLDGGG--ERVLT---DTGLDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             eCCCCC--eEEcc---CCCCCCCceECCCCCEEEEEEeC
Confidence            988753  23333   11234556899999888766443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.37  E-value=8.2e-11  Score=122.90  Aligned_cols=196  Identities=10%  Similarity=0.076  Sum_probs=130.8

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCC-Cc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 008356            1 MYNCKDEHLASISL-SGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-   74 (568)
Q Consensus         1 afSpdG~~LasGs~-DG~V~VWDl~t-g~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v-   74 (568)
                      +|+|++++|++++. ++.|.+|++++ +.   .+..+.  .......++++|+++.++++...++.|.+||++...... 
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            47899999888764 88999999964 32   222222  223456788999998666777778999999997632111 


Q ss_pred             -----EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC--Cce--eeEee-c------CCCeEEEEEecCCCEE
Q 008356           75 -----SWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS--RRP--SSCIT-Y------EAPFSSLAFIDDDWIL  137 (568)
Q Consensus        75 -----~~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt--~~~--v~~~~-h------~~~ItsLafsPdg~~L  137 (568)
                           .... .......+.|+|++++++++.. +++|.+||+..  ++.  +..+. .      ......+.++|++++|
T Consensus       164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                 1111 2344678999999999988876 89999999973  322  22221 1      1123468899999999


Q ss_pred             EEEEc-CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          138 TAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       138 asGs~-DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +++.. ++.|.+|+++......+.+....-......+.|+|+|++|++.           ...++.|.+|++..
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va-----------~~~~~~v~v~~~~~  305 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA-----------GQKSHHISVYEIDG  305 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE-----------EccCCcEEEEEEcC
Confidence            99864 7899999997653333333321112345678999987776544           33478888887643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.37  E-value=1.9e-11  Score=133.59  Aligned_cols=196  Identities=13%  Similarity=0.174  Sum_probs=148.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-------   71 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-------   71 (568)
                      |+++++.+++-+..|-.++|...+..   ....+. +|-+.|++++|.|.|+ +|++++.|.+-|||---+.+       
T Consensus       324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS-GH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEia  401 (764)
T KOG1063|consen  324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS-GHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIA  401 (764)
T ss_pred             EcCCCCEEEEecccCcEEEEeccCccceeeccccc-cccccceeeeecCCCC-EEEEeccccceeeecccccccceeeec
Confidence            78999999999999999999933322   222334 4777889999999998 78888888777765211000       


Q ss_pred             --------------------------c-----------------------------------------------------
Q 008356           72 --------------------------P-----------------------------------------------------   72 (568)
Q Consensus        72 --------------------------~-----------------------------------------------------   72 (568)
                                                .                                                     
T Consensus       402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~  481 (764)
T KOG1063|consen  402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT  481 (764)
T ss_pred             ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence                                      0                                                     


Q ss_pred             -----------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 008356           73 -----------------------------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGS  112 (568)
Q Consensus        73 -----------------------------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DG-----tV~IWDlrt  112 (568)
                                                         .++.+.+|...|++++.+|++++|++++...     .|++|+..+
T Consensus       482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~  561 (764)
T KOG1063|consen  482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN  561 (764)
T ss_pred             ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence                                               0113678999999999999999999998654     699999998


Q ss_pred             CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          113 RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       113 ~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~-l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      -..+..+ .|.-.|+.++|+|||++|++.+.|+++.+|........... -....|...|.+..|+|+++++++      
T Consensus       562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT------  635 (764)
T KOG1063|consen  562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT------  635 (764)
T ss_pred             hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE------
Confidence            7777655 79999999999999999999999999999998643222111 112378899999999997665554      


Q ss_pred             CeEEEEecCCCcEEcCCCCCC
Q 008356          191 ETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                            ++.|.+|++|.....
T Consensus       636 ------aSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  636 ------ASRDKKVKVWEEPDL  650 (764)
T ss_pred             ------ecCCceEEEEeccCc
Confidence                  466999999987654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.36  E-value=6.4e-11  Score=121.87  Aligned_cols=146  Identities=17%  Similarity=0.254  Sum_probs=118.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCC--CCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCceeEEeccCCC
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~--h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      .++|+++-.+ .|+|||+.+.+.+..+...  +...+.++.++..+.++.+=++ ..|.|+|||..+-+ .+..+..|.+
T Consensus        97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~  174 (391)
T KOG2110|consen   97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKG  174 (391)
T ss_pred             cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCC
Confidence            4566666555 4999999999998887653  3444665666665553333333 46899999998877 4778889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           83 PTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGt-V~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .+.+++|+++|.+|+++++.|+ |||+.+.+++.+..+.   ....|.+++|++++.+|++.+..++|+||.+..
T Consensus       175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            9999999999999999999996 7899999999998884   345689999999999999999999999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=6.2e-12  Score=128.11  Aligned_cols=148  Identities=25%  Similarity=0.350  Sum_probs=123.4

Q ss_pred             eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeEe--e-cC-CC
Q 008356           51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI--T-YE-AP  124 (568)
Q Consensus        51 ~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~-h~-~~  124 (568)
                      ..++++..+|.|++||..+++ .+..++++...++.+.|..  ....+.+|+.||+|++||+|.......+  . +. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            368899999999999998865 4788999999999999987  5678999999999999999987665554  2 32 46


Q ss_pred             eEEEEEecCCCEEEEEEc----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCC
Q 008356          125 FSSLAFIDDDWILTAGTS----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG  200 (568)
Q Consensus       125 ItsLafsPdg~~LasGs~----DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~D  200 (568)
                      ..|++.+-.++++++|..    +-.|.+||+|..++++..+.. .|..-|++++|+|.           +..+|++++.|
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~-----------~pnlLlSGSvD  187 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPS-----------DPNLLLSGSVD  187 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCC-----------CCCeEEeeccc
Confidence            788888878889999865    567999999998776555542 69999999999996           56678999999


Q ss_pred             CcEEcCCCCCC
Q 008356          201 DSILMPDPLPS  211 (568)
Q Consensus       201 g~V~VWDlr~~  211 (568)
                      |.|.+||+...
T Consensus       188 GLvnlfD~~~d  198 (376)
T KOG1188|consen  188 GLVNLFDTKKD  198 (376)
T ss_pred             ceEEeeecCCC
Confidence            99999999754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=6.2e-11  Score=128.95  Aligned_cols=173  Identities=19%  Similarity=0.196  Sum_probs=116.5

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCceeE
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW--Dl~t~~~~v~   75 (568)
                      .|+|||++|+.++.+   ..|++||+.+++......  ..+....++|+|+|+.++++...+|.+.||  |+.++.  ..
T Consensus       210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~  285 (429)
T PRK01742        210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PS  285 (429)
T ss_pred             eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC--eE
Confidence            489999999987654   369999998876432211  112234589999998655556678876555  555554  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC-ceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~-~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .+..+...+..+.|+||++.|+.++ .++...+|++... .....+.+..  .++.|+|+|++|+..+.++ +.+||+.+
T Consensus       286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~  362 (429)
T PRK01742        286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTS  362 (429)
T ss_pred             eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence            5667777788999999999877655 5677777776432 2223333333  4578999999999887765 66699987


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +..  ..+.. .  .....+.|+|+|++|+..
T Consensus       363 g~~--~~lt~-~--~~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        363 GST--EVLSS-T--FLDESPSISPNGIMIIYS  389 (429)
T ss_pred             CCe--EEecC-C--CCCCCceECCCCCEEEEE
Confidence            642  22221 1  123567899988777665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.35  E-value=9.5e-12  Score=134.94  Aligned_cols=169  Identities=16%  Similarity=0.329  Sum_probs=135.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|-|||..|+.+. +..+.|||..+|..+..+++ |++.|.|++|+.+|+ +|++|+.|..|.+|.-.-..   ..-..|
T Consensus        19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG---~LkYSH   92 (1081)
T KOG1538|consen   19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG---ILKYSH   92 (1081)
T ss_pred             EECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCc-eeccCCCceeEEEecccccc---eeeecc
Confidence            5889999888775 45799999999999999998 888999999999998 89999999999999865433   224579


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      .+.|.|+.|+|-...|++|+... .-+|...... +.......+|.+++|..||++|+.|..||+|.+-+-... ..+.+
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I  169 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKI  169 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEE
Confidence            99999999999888899988554 5677655432 222234567899999999999999999999999876554 33344


Q ss_pred             EeecCCCCCeeEEEEccC
Q 008356          161 LRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       161 l~~~~h~~~VtsLafspd  178 (568)
                      -+.-+...+|.+++|+|.
T Consensus       170 ~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             eCCCCCCCCceEEEecCC
Confidence            343456789999999996

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.9e-11  Score=126.16  Aligned_cols=152  Identities=16%  Similarity=0.209  Sum_probs=125.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECC------CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLA------SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~------tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      |+.++++|++|+.|..++||+++      +.+.+.....+|..-|.|++|+-.++ .+++|..+++|.+.|+.+.+.  .
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qs--i  140 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQS--I  140 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeeccccee--e
Confidence            78889999999999999999985      34566666666778999999998776 899999999999999988773  2


Q ss_pred             EeccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe---ecCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 008356           76 WLKQHS---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI---TYEAPFSSLAFIDD-DWILTAGTSNGRVV  147 (568)
Q Consensus        76 ~l~~H~---~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~---~h~~~ItsLafsPd-g~~LasGs~DG~V~  147 (568)
                      .+..|.   +.|+.+..+|..+.|++.+.++.|.+||++..+ +...+   .....+..+.|+|. ..+|++.+..+-+.
T Consensus       141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~  220 (609)
T KOG4227|consen  141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN  220 (609)
T ss_pred             eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence            334444   489999999999999999999999999998754 33222   46677889999995 57888888899999


Q ss_pred             EEECCCCCC
Q 008356          148 FYDIRGKPQ  156 (568)
Q Consensus       148 VWDlrt~~~  156 (568)
                      |||.+....
T Consensus       221 ~~D~R~~~~  229 (609)
T KOG4227|consen  221 VFDRRMQAR  229 (609)
T ss_pred             ceeeccccc
Confidence            999997544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=1.4e-11  Score=131.43  Aligned_cols=152  Identities=16%  Similarity=0.187  Sum_probs=125.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCC---------C
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTG---------R   70 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t---------~   70 (568)
                      .|+.+|.+|++|+.|-.+.|||.-..+++..+...|..-|.+++|-|.. +.++++|..|..|++||+..         .
T Consensus        57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~  136 (758)
T KOG1310|consen   57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM  136 (758)
T ss_pred             eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence            4899999999999999999999998889999988899999999999853 34789999999999999974         2


Q ss_pred             CceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceee-------Ee----ecCCCeEEEEEecC-CCEE
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSS-------CI----TYEAPFSSLAFIDD-DWIL  137 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~-------~~----~h~~~ItsLafsPd-g~~L  137 (568)
                      +.....+..|...|..++-.|++ +.+.++++||+|+-||+|......       .+    ..--...|+.++|. ..+|
T Consensus       137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l  216 (758)
T KOG1310|consen  137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL  216 (758)
T ss_pred             cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence            23356677899999999999976 899999999999999999742111       00    12234678999994 6789


Q ss_pred             EEEEcCCeEEEEECC
Q 008356          138 TAGTSNGRVVFYDIR  152 (568)
Q Consensus       138 asGs~DG~V~VWDlr  152 (568)
                      ++|+.|-..++||.|
T Consensus       217 aVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  217 AVGGSDPFARLYDRR  231 (758)
T ss_pred             EecCCCchhhhhhhh
Confidence            999999999999965

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.33  E-value=2.5e-11  Score=122.90  Aligned_cols=195  Identities=14%  Similarity=0.223  Sum_probs=150.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl-~t~~-~~v~   75 (568)
                      ||++|+..+|++-....|.||.....+   ...+++. |...|++|+|+|..+ .|++++.|..-+||.. .++. .+..
T Consensus        17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~Wkptl   94 (361)
T KOG1523|consen   17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTL   94 (361)
T ss_pred             eecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccce
Confidence            689999999999999999999986554   5666775 788999999999987 6999999999999998 3333 2355


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-----eecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-----ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-----~~h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      .+..++..++++.|+|..+.|++|+..+.|.||-++..+--.+     ..+...|.++.|+|++-+|++|+.|+.++||.
T Consensus        95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen   95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence            6777899999999999999999999999999998876553322     24567799999999999999999999999985


Q ss_pred             CC-----CCC--------CceEEE-eec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          151 IR-----GKP--------QPLTVL-RAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       151 lr-----t~~--------~~v~~l-~~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .-     ...        .|+-.+ ... ...+.|..+.|+|+|..|+..            +.|..+.+=|..
T Consensus       175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv------------~Hds~v~~~da~  236 (361)
T KOG1523|consen  175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV------------GHDSTVSFVDAA  236 (361)
T ss_pred             EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe------------cCCCceEEeecC
Confidence            42     111        111111 111 456889999999987666554            347777766643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2.6e-11  Score=137.25  Aligned_cols=194  Identities=12%  Similarity=0.219  Sum_probs=145.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEecc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~   79 (568)
                      |.....+|+++|.-..|+|||+.....+..+.......++++.-+-.+.+++++|..||.|++||.+-..  ..+...+.
T Consensus      1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred             hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence            4444556777777889999999888888877765666777776655554599999999999999996543  35788889


Q ss_pred             CCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeE---ee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           80 HSAP--TAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSC---IT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        80 H~~~--VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~---~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      |...  |..+.+.+.|. .|++|+.||.|++||+|.......   ..   ..+..+++..+++..++|+|+. +.|+||+
T Consensus      1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred             cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence            9887  99999998554 599999999999999998422221   12   2345999999999999999998 9999999


Q ss_pred             CCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          151 IRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       151 lrt~~~~v~~l~~~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.+...  ..++.+     ...+.+.|++|||..-.            ++.|..|..|.||-..+
T Consensus      1332 ~~G~~l--~~~k~n~~F~~q~~gs~scL~FHP~~~l------------lAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1332 LSGEQL--NIIKYNPGFMGQRIGSVSCLAFHPHRLL------------LAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             cChhhh--cccccCcccccCcCCCcceeeecchhHh------------hhhccCCceEEEeecCC
Confidence            987532  112111     23456899999995433            44445688888886544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=4.2e-11  Score=135.60  Aligned_cols=197  Identities=18%  Similarity=0.257  Sum_probs=143.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC--CCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCC----Ccee
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGR----SPKV   74 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t~----~~~v   74 (568)
                      |+|=...++++...-.|.|||.+.++....|..+.  ...|+.+++. .+...++++|+.||.|+||+--..    ..++
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence            56667788888877899999999999887776533  4567777764 344558999999999999985221    1122


Q ss_pred             EEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC--CCeEEEEEec-CCCEEEEEEcCC
Q 008356           75 SWLKQ-------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE--APFSSLAFID-DDWILTAGTSNG  144 (568)
Q Consensus        75 ~~l~~-------H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~--~~ItsLafsP-dg~~LasGs~DG  144 (568)
                      .-+..       -.+.=.-++|.....+|+++|.-+.|+|||....+.+..+...  ..++++.-+- .|+++++|..||
T Consensus      1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred             EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence            22221       1111134678886667777777899999999998888777543  3455554433 479999999999


Q ss_pred             eEEEEECCCCCC--ceEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          145 RVVFYDIRGKPQ--PLTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       145 ~V~VWDlrt~~~--~v~~l~~~~h~~~--VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .|++||.|....  .+...+  .|...  |..+.+.++|           -..|++++.||.|++||+|..
T Consensus      1232 svRvyD~R~a~~ds~v~~~R--~h~~~~~Iv~~slq~~G-----------~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYR--EHNDVEPIVHLSLQRQG-----------LGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceEEeecccCCccccceeec--ccCCcccceeEEeecCC-----------CcceeeeccCCeEEEEecccC
Confidence            999999997644  455555  56666  9999998853           126888899999999999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=1.7e-10  Score=118.70  Aligned_cols=184  Identities=13%  Similarity=0.212  Sum_probs=137.2

Q ss_pred             EEEEEECC--CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCCC
Q 008356            8 HLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHSA   82 (568)
Q Consensus         8 ~LasGs~D--G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~---~H~~   82 (568)
                      ++|..+.+  +.+++++.+.+..++++.  ....|-+|.++.+   .|+++-++. |+|||+.+.+. ++.+.   .+..
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mkl-LhTI~t~~~n~~  130 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKL-LHTIETTPPNPK  130 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc---eEEEEEccc-EEEEeccccee-ehhhhccCCCcc
Confidence            44444433  458889988888888877  3456777888864   466555544 99999998874 33333   3555


Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCce
Q 008356           83 PTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPL  158 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~~v  158 (568)
                      .+.++.++..+.+++.-+  ..|.|.+||+.+-+++..+ .|++.+.+++|+++|.+||++++.|+ |+||.+..+.+..
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~  210 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY  210 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence            677777777777888654  5689999999999988888 79999999999999999999999998 8999998885444


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      +..+. .-...|.+++|++++++|++.            +.-++|.+|.+...
T Consensus       211 eFRRG-~~~~~IySL~Fs~ds~~L~~s------------S~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  211 EFRRG-TYPVSIYSLSFSPDSQFLAAS------------SNTETVHIFKLEKV  250 (391)
T ss_pred             eeeCC-ceeeEEEEEEECCCCCeEEEe------------cCCCeEEEEEeccc
Confidence            43332 224568999999987766555            44788999887653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=4.2e-11  Score=123.60  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=135.7

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC------CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t------~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD  109 (568)
                      |.+.|++|.|+.+++ +|++|++|..+++|.++.      .+++...-..|...|.|++|+...+.+++|+.+++|.+.|
T Consensus        55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            778899999999987 899999999999999842      2332222234567899999999899999999999999999


Q ss_pred             CCCCceeeEeecCC---CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          110 PGSRRPSSCITYEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       110 lrt~~~v~~~~h~~---~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      +++.+.+.++.|..   .|..+..+|..+.|++.+.++.|.+||.+....+...+...........+.|+|..+      
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P------  207 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP------  207 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc------
Confidence            99999998887655   899999999999999999999999999998876666666545566788899999643      


Q ss_pred             cCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          187 TCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                           .+|++....+-+-+||+|..+
T Consensus       208 -----~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  208 -----ALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             -----eeEEeccccCCCCceeecccc
Confidence                 345555667888999998755

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.31  E-value=2.1e-11  Score=120.69  Aligned_cols=185  Identities=16%  Similarity=0.114  Sum_probs=137.5

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------------
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------------   73 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-------------   73 (568)
                      ++|.+|...|.|++|++.+.+.+..++.++...|+.+.-.|++.  +.+-++|+.+.+|++......             
T Consensus        26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC  103 (323)
T KOG0322|consen   26 ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC  103 (323)
T ss_pred             hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence            45888999999999999999988888877888999999898854  888999999999998652100             


Q ss_pred             ----------e-EE----------------------------eccCCCCeEEEEEcC-CC--CEEEEEeCCCeEEEEECC
Q 008356           74 ----------V-SW----------------------------LKQHSAPTAGISFSS-DD--KIIASVGLDKKLYTYDPG  111 (568)
Q Consensus        74 ----------v-~~----------------------------l~~H~~~VtslafsP-dg--~~LaSgs~DGtV~IWDlr  111 (568)
                                . ..                            -....+.++|..|.. ++  -+++.|.++|.|.+||+.
T Consensus       104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S  183 (323)
T KOG0322|consen  104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS  183 (323)
T ss_pred             cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence                      0 00                            001123356666543 22  246778899999999998


Q ss_pred             CCceeeEe-----------ecC----------------------------------------------CCeEEEEEecCC
Q 008356          112 SRRPSSCI-----------TYE----------------------------------------------APFSSLAFIDDD  134 (568)
Q Consensus       112 t~~~v~~~-----------~h~----------------------------------------------~~ItsLafsPdg  134 (568)
                      ++..+..+           .|.                                              -.+..+.+.||+
T Consensus       184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~  263 (323)
T KOG0322|consen  184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG  263 (323)
T ss_pred             CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC
Confidence            75211100           111                                              124456677899


Q ss_pred             CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       135 ~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +++|+++.|++|+||..++. +++.++.  .|.+.|++++|+|+.            .+++.+++|..|-+|++
T Consensus       264 KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagvn~vAfspd~------------~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGVNAVAFSPDC------------ELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEeecccCCcEEEEEeccC-Cchhhhh--hhhcceeEEEeCCCC------------chhhhccCCceEEeeec
Confidence            99999999999999999998 6778887  688999999999964            35556678999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=9.4e-11  Score=121.34  Aligned_cols=194  Identities=19%  Similarity=0.270  Sum_probs=150.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEecc
Q 008356            6 DEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~   79 (568)
                      +..|++|-.+|.+.+|..+.+.    .+..+..  ...+..|.-++...+++++|+..  ..+.|||+...++ +..-+.
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKN  191 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKN  191 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccC
Confidence            3467888899999999987443    2333442  34566678888888788889998  8899999987642 221111


Q ss_pred             ---------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-ceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           80 ---------HSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSR-RPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        80 ---------H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~-~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                               -.-.++++.|.+.  ...|+++..-+.|++||.+.+ +++..+. .+.+|+++...|.++++++|..-+.+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence                     1234788899986  899999999999999999975 4677774 67889999999999999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      ..||++.+......+.  +-.+.|+++..+|.+++++.+            +.|+.|+|+|+........
T Consensus       272 ~~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las~------------GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  272 AKFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLASC------------GLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             heecccCceeeccccC--CccCCcceEEEcCCCceEEee------------ccceeEEEeecccchhhhh
Confidence            9999999854444454  677899999999977666655            5699999999987554443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.29  E-value=2.4e-11  Score=123.30  Aligned_cols=144  Identities=10%  Similarity=0.152  Sum_probs=118.2

Q ss_pred             EEEEEECCCcEEEEECCCC---ceeEEeeCC-CCCcEEEEEEccC---CCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            8 HLASISLSGDLILHNLASG---AKAAELKDP-NEQVLRVLDYSRN---SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg---~~v~~l~~~-h~~~Vs~Lafspd---g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      .+++.| .+.|.+|+....   +.+..+... +++....++|+-+   +.-+++.|+.-|.|+|.|+...+. ...+.+|
T Consensus        57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-~~~~~gh  134 (385)
T KOG1034|consen   57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-SKNYRGH  134 (385)
T ss_pred             eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-ccceecc
Confidence            455554 457888887532   233444333 5666777888754   334788899999999999988774 6778999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ...|+.+.++| +.+++++++.|..|++||+++..++.++    +|.+.|.++.|+.+|.+|++++.|..|++|++..
T Consensus       135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            99999999999 6789999999999999999999999998    4899999999999999999999999999999983

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.29  E-value=3.9e-11  Score=124.57  Aligned_cols=152  Identities=21%  Similarity=0.413  Sum_probs=124.1

Q ss_pred             eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 008356           32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------KVSWLKQHSAPTAGISFSSDDKIIASVGLDK  103 (568)
Q Consensus        32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--------~v~~l~~H~~~VtslafsPdg~~LaSgs~DG  103 (568)
                      +.-|....+..+.|.++..+.+++|+.|..|++|.+.....        .+..+..|...|+++.|+|+|.+|++|+.+|
T Consensus         8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence            33345678888999998877899999999999999843321        1345778999999999999999999999999


Q ss_pred             eEEEEECC--------C-----Cc--ee-eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 008356          104 KLYTYDPG--------S-----RR--PS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus       104 tV~IWDlr--------t-----~~--~v-~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                      .|.+|-..        +     .+  .+ ... .|...|..++|.|+++++++++-|..+++||++.+ +....+.  .|
T Consensus        88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~--dh  164 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD--DH  164 (434)
T ss_pred             eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc--cc
Confidence            99999765        2     10  11 112 58899999999999999999999999999999988 3445554  78


Q ss_pred             CCCeeEEEEccCCCeEEEec
Q 008356          167 SEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s  186 (568)
                      ...|..++|.|.++++++-+
T Consensus       165 ~~yvqgvawDpl~qyv~s~s  184 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKS  184 (434)
T ss_pred             ccccceeecchhhhhhhhhc
Confidence            89999999999999988763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.8e-11  Score=130.43  Aligned_cols=188  Identities=18%  Similarity=0.321  Sum_probs=146.4

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      .||..|+||++...+   ..|.|+++...+...-|+. ..+.|.++.|+|... +|++++. ..|+|||+.... .+..+
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe-lvKkL  603 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE-LVKKL  603 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-HHHHH
Confidence            488999999987654   4699999977666655653 467788899999987 5666554 789999997754 45666


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC---
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR---  152 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr---  152 (568)
                      ......|..++.+|.|..|+.++.|+.++.||+.-. ++.+.+ .|...++.++|++.-.++++|+.||.+.||.-+   
T Consensus       604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence            667778999999999999999999999999999754 455555 588899999999999999999999999998543   


Q ss_pred             ---CCC--CceEEEeecCCCCC----eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356          153 ---GKP--QPLTVLRACSSSEA----VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       153 ---t~~--~~v~~l~~~~h~~~----VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW  206 (568)
                         ...  .|++.++  +|...    |..+.|||...||+++            +.|+.|++|
T Consensus       684 Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsA------------GAd~tirlf  732 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSA------------GADGTIRLF  732 (733)
T ss_pred             hhhcCCceEeeeecc--CceeecccceEeecccCCCceEEec------------CCCceEEee
Confidence               221  2345555  66554    8889999977665554            558999988

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.3e-09  Score=118.22  Aligned_cols=178  Identities=15%  Similarity=0.183  Sum_probs=122.6

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~   75 (568)
                      .|+|||++|+..+.+   ..|++||+.+++......  ..+.+....|+|+|+.++++...+|  .|++||+.++.  ..
T Consensus       205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~  280 (430)
T PRK00178        205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LS  280 (430)
T ss_pred             eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eE
Confidence            489999999877643   369999998886543222  2334456899999996666776666  58888998776  44


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-C--eEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGL-D--KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~-D--GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G--~V~VW  149 (568)
                      .+..+........|+||++.|+..+. +  ..|+++|+.+++...............|+|+|++|+....+ +  .|.+|
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            55566666777899999998876654 3  36888898887754443223334567899999999887653 3  58889


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      |+.++.  .+.+..   ........|+|+|++++....
T Consensus       361 dl~tg~--~~~lt~---~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        361 DLQRGS--VRILTD---TSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             ECCCCC--EEEccC---CCCCCCceECCCCCEEEEEEe
Confidence            998763  233331   122335689999888776533

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.9e-11  Score=130.49  Aligned_cols=169  Identities=19%  Similarity=0.233  Sum_probs=129.3

Q ss_pred             eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 008356           29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLY  106 (568)
Q Consensus        29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~  106 (568)
                      ..++.+ |.+.|+|++|+.+|. +|++|++|-.+.|||.-..+.....-.+|...|.++.|-|  +.+++++|..|..|+
T Consensus        43 E~eL~G-H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   43 EAELTG-HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhcc-ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            345666 888999999999998 9999999999999999877766666789999999999999  677889999999999


Q ss_pred             EEECCCC----------ceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCceE-------EEeecCCC
Q 008356          107 TYDPGSR----------RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLT-------VLRACSSS  167 (568)
Q Consensus       107 IWDlrt~----------~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V~VWDlrt~~~~v~-------~l~~~~h~  167 (568)
                      ++|+...          .....+ .|...|..++-.|++ +.+.++++||+|+-||+|....+..       .......-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            9999741          122223 477889999999987 8999999999999999997432111       11111122


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       168 ~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      -...++..+|.           ...+|+.|+.|-..++||.|.
T Consensus       201 ielk~ltisp~-----------rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  201 IELKCLTISPS-----------RPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             heeeeeeecCC-----------CCceEEecCCCchhhhhhhhh
Confidence            23566777775           334555566699999999654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.23  E-value=1.1e-11  Score=137.47  Aligned_cols=192  Identities=18%  Similarity=0.237  Sum_probs=140.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |...|.+|++|+.|..|+||.++++.++..+.+ |.+.|++++.+.+.- ++++++.|..|++|.+..+.+ +..+.+|+
T Consensus       198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~p-vsvLrght  274 (1113)
T KOG0644|consen  198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAP-VSVLRGHT  274 (1113)
T ss_pred             eccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhh-hhhhcccCceEEEEecCCCch-HHHHhccc
Confidence            567799999999999999999999999999998 777889999998775 789999999999999998874 78899999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-----eec--------------------------CCCeEEEEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-----ITY--------------------------EAPFSSLAF  130 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-----~~h--------------------------~~~ItsLaf  130 (568)
                      +.|++++|+|-.    +.+.||++++||.+-.-.+..     +..                          ...+.+++|
T Consensus       275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~  350 (1113)
T KOG0644|consen  275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW  350 (1113)
T ss_pred             cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence            999999999944    778999999999871110000     001                          112333444


Q ss_pred             ecCCCEEE-----------EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecC
Q 008356          131 IDDDWILT-----------AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (568)
Q Consensus       131 sPdg~~La-----------sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~  199 (568)
                      ..+.-.++           ++-.+..+.+|++-.+ +....+.  +|...+..+.+||-..           .+..+++.
T Consensus       351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~--ghsd~~yvLd~Hpfn~-----------ri~msag~  416 (1113)
T KOG0644|consen  351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLM--GHSDEVYVLDVHPFNP-----------RIAMSAGY  416 (1113)
T ss_pred             hccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhc--ccccceeeeeecCCCc-----------HhhhhccC
Confidence            43332333           3334556777887776 3334444  7889999999999643           34455566


Q ss_pred             CCcEEcCCCCCCCcc
Q 008356          200 GDSILMPDPLPSVTT  214 (568)
Q Consensus       200 Dg~V~VWDlr~~~~~  214 (568)
                      ||...|||+-...+.
T Consensus       417 dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  417 DGSTIIWDIWEGIPI  431 (1113)
T ss_pred             CCceEeeecccCCcc
Confidence            888888888654443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.1e-09  Score=117.75  Aligned_cols=176  Identities=14%  Similarity=0.174  Sum_probs=118.1

Q ss_pred             CccCCCCEEEEEECC-C--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLS-G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~D-G--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~   75 (568)
                      .|+|||++|+....+ +  .|++||+.+++......  .........|+|+|+.++++...+|.  |++||+.+++  ..
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~  299 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT  299 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE
Confidence            489999999876543 3  58899998876533221  12233467999999977777777775  7777887765  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VW  149 (568)
                      .+..+...+....|+||++.|+..+. ++  .|+++|+.+++..............+|+|||++|+..+. ++  .|.++
T Consensus       300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            55566666788999999998876653 33  578888888775544323333455789999999888655 33  46667


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      |+.++.  ...+..  . .......|+|+|+.|+..
T Consensus       380 dl~~g~--~~~lt~--~-~~d~~ps~spdG~~I~~~  410 (448)
T PRK04792        380 DLETGA--MQVLTS--T-RLDESPSVAPNGTMVIYS  410 (448)
T ss_pred             ECCCCC--eEEccC--C-CCCCCceECCCCCEEEEE
Confidence            877663  233321  1 122345799998877655

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.21  E-value=4.2e-10  Score=124.97  Aligned_cols=198  Identities=17%  Similarity=0.170  Sum_probs=140.3

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCcee
Q 008356            2 YNCKD-EHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      |+|.. .+|+.|..+|.|.+||+..+..     +......|.+.+..+.|..+.. +-|++++.||.|..|+++.-..+.
T Consensus       250 f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~  329 (555)
T KOG1587|consen  250 FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV  329 (555)
T ss_pred             eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence            56644 5677788899999999986654     3334455788899999976543 238888889999999986433211


Q ss_pred             E----Eec-------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC---CCc-----ee-eEeecCCCeEEEEEecC
Q 008356           75 S----WLK-------QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG---SRR-----PS-SCITYEAPFSSLAFIDD  133 (568)
Q Consensus        75 ~----~l~-------~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlr---t~~-----~v-~~~~h~~~ItsLafsPd  133 (568)
                      .    ...       .....+++++|.+ +.+.++.|+++|.|..-+..   ...     .. ....|.++|.++.++|=
T Consensus       330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF  409 (555)
T KOG1587|consen  330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF  409 (555)
T ss_pred             hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence            1    011       1234689999999 88899999999998874432   222     11 22258899999999996


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       134 g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +..++..+.|-.|+||.......|+..+.  .+...|++++|+|-           ...+++++..||.|.+||++...
T Consensus       410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSpt-----------rpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  410 YPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPT-----------RPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             ccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCc-----------CceEEEEEcCCCceehhhhhccc
Confidence            55444444499999999885445555554  56777999999995           33456667779999999997644

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.21  E-value=6.8e-11  Score=120.07  Aligned_cols=138  Identities=14%  Similarity=0.166  Sum_probs=109.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|+|++||+...- .+.|-|.++-+....+..  -+.|.-+.|..+..++|.....|+.|.+|++...+- ...+...
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIdeg   90 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDEG   90 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEeccC
Confidence            489999999999766 788889887765544432  233455899999988888888999999999987763 4556777


Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc
Q 008356           81 SAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        81 ~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~  142 (568)
                      ...+..+.|+|||++|+ +...|-.|.+|.+.+.+....--.+..+..++|+|||++.+..+.
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence            78899999999997665 555788999999998877665545556789999999999988765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.21  E-value=2.7e-09  Score=108.33  Aligned_cols=178  Identities=11%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC--CCeEEEEEcCCC
Q 008356           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS--APTAGISFSSDD   93 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~--~~VtslafsPdg   93 (568)
                      ++|.|||=...+++.++.  ....|.+|++.++   .|++. ..+.|+||....+-.+++.+....  ..+.+++-..+.
T Consensus        75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            479999966777777776  5678899999876   35544 457899999975544455544433  233333322244


Q ss_pred             CEEEEEe-CCCeEEEEECCCCce---eeEeecCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCC
Q 008356           94 KIIASVG-LDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        94 ~~LaSgs-~DGtV~IWDlrt~~~---v~~~~h~~~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      .+|+.-+ .-|.|.|-|+...+.   ..+..|+..|.|++++-+|..+|+++..|+ |+|||.+++.. +..++.-....
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A  227 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVDRA  227 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCchh
Confidence            4454433 568999999987555   555589999999999999999999999998 89999999854 44454334557


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .|.+++|+|+..+|++.            +..|+|.||.++...
T Consensus       228 ~iy~iaFSp~~s~Lavs------------SdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVS------------SDKGTLHIFSLRDTE  259 (346)
T ss_pred             eEEEEEeCCCccEEEEE------------cCCCeEEEEEeecCC
Confidence            89999999987776665            558999999887644

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=3.3e-10  Score=123.34  Aligned_cols=169  Identities=14%  Similarity=0.140  Sum_probs=117.6

Q ss_pred             CccCCCCEEEEEE-CCCcEEE--EECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASIS-LSGDLIL--HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs-~DG~V~V--WDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+|||++|+.+. .+|.+.|  ||+.+++. ..+.. +...+....|+|+|+.+++++..+|...||+++........+
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            4899999988765 6776555  46655554 34443 445567799999999666666678888888875332223333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-CCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG-KPQ  156 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt-~~~  156 (568)
                       .+..  .++.|+|++++|+.++.++ +.+||+.+++....... .....+.|+|+|++|+.++.++.+.+|++.. ...
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~  406 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR  406 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence             3433  4678999999998888765 56699998876543322 2345688999999999999999888777532 112


Q ss_pred             ceEEEeecCCCCCeeEEEEccC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspd  178 (568)
                      ....+.  .|.+.+..++|+|-
T Consensus       407 ~~~~l~--~~~g~~~~p~wsp~  426 (429)
T PRK01742        407 FKARLP--GSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEcc--CCCCCCCCcccCCC
Confidence            334444  67788889999983

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.19  E-value=2.4e-10  Score=115.82  Aligned_cols=158  Identities=10%  Similarity=0.199  Sum_probs=126.3

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-C
Q 008356           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-R  113 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~  113 (568)
                      .+.|+|.+|+++.. .++.+-.+..|.||...+..  ...+.+..|...|++|+|+|..+.|++|+.|+.-++|.... +
T Consensus        10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            46899999999987 78888999999999987655  45788999999999999999999999999999999999844 3


Q ss_pred             c--e-eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 008356          114 R--P-SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCK  189 (568)
Q Consensus       114 ~--~-v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ss  189 (568)
                      +  + +..+.+....+++.|+|.++.+|+|+.-..|.||-.+....-. .......+...|++++|+|++-.++.     
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa-----  163 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA-----  163 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc-----
Confidence            2  2 2334789999999999999999999999999999988754310 00111246788999999997554444     


Q ss_pred             CCeEEEEecCCCcEEcCC
Q 008356          190 AETALLGGAVGDSILMPD  207 (568)
Q Consensus       190 d~~~Lls~s~Dg~V~VWD  207 (568)
                             ++.|+.++||.
T Consensus       164 -------Gs~D~k~rVfS  174 (361)
T KOG1523|consen  164 -------GSTDGKCRVFS  174 (361)
T ss_pred             -------cccCcceeEEE
Confidence                   45577777764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.18  E-value=1.2e-10  Score=115.43  Aligned_cols=143  Identities=21%  Similarity=0.378  Sum_probs=112.7

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeC---------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--Ccee-E
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKD---------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKV-S   75 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~---------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~--~~~v-~   75 (568)
                      +|++|..+|.|.+||+.++..+..++.         .|.+.|.++.|.+.-. .=++|+.+..+.+|.++..  ..++ .
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccc
Confidence            456677899999999998754433321         3677788899886543 3467777888999998543  2221 1


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      .+.-..-.|..+..-||++.+++++.|+.|++|..++.+++.++ .|.+.|++++|+|+..++|+++.|++|.+|++
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            12222334888999999999999999999999999999999888 58899999999999999999999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.16  E-value=8.1e-11  Score=123.91  Aligned_cols=208  Identities=17%  Similarity=0.187  Sum_probs=162.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |-|..-+|++++..|.+...|+.+|+.+..+.. ..+.+..++-+|-+. ++-+|..+|+|.+|.-...++ +..+..|.
T Consensus       217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skeP-LvKiLcH~  293 (545)
T KOG1272|consen  217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEP-LVKILCHR  293 (545)
T ss_pred             ccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccc-eEEEcCCCceEEecCCCCcch-HHHHHhcC
Confidence            445556788899999999999999999998875 456778899999887 899999999999999988876 44567799


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC-CC-CCceE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR-GK-PQPLT  159 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr-t~-~~~v~  159 (568)
                      ++|.+|++.++|++++|.+.|..|+|||+|.-..+..+....+...++++..|  +++.+....|.||.=. .. .....
T Consensus       294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~  371 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET  371 (545)
T ss_pred             CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc
Confidence            99999999999999999999999999999998766666556677888888654  3444455679999422 21 11111


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      .+-.+.-.+.|..+.|.|-...|-.+....-..+|+-|+.+-..--|...||.++
T Consensus       372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetr  426 (545)
T KOG1272|consen  372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETR  426 (545)
T ss_pred             chhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhh
Confidence            1111223458999999998888888766666788999998888888888888753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=5.7e-09  Score=102.68  Aligned_cols=144  Identities=16%  Similarity=0.274  Sum_probs=112.1

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-----
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-----   77 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l-----   77 (568)
                      .|..+-|+.++.|+.++.||+++|+..+++++ |.+.|.++.-..... .+++|++||+++|||.++.+. +..+     
T Consensus       123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~  199 (325)
T KOG0649|consen  123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKH-VSMIEPYKN  199 (325)
T ss_pred             ccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc-ceeecCCCccEEEEeccccce-eEEeccccC
Confidence            35666677777999999999999999999998 778888887733333 499999999999999988774 2222     


Q ss_pred             ----ccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           78 ----KQH-SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        78 ----~~H-~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                          +.| ...|.+++.+  ..++++|+ ...+.+|.++..++..++....++..+.|..  ..++++++.+.|.-|.+.
T Consensus       200 ~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  200 PNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             hhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeec
Confidence                222 2346666654  56666655 5569999999999999999999999999975  478888888889999887


Q ss_pred             CC
Q 008356          153 GK  154 (568)
Q Consensus       153 t~  154 (568)
                      ..
T Consensus       275 Gv  276 (325)
T KOG0649|consen  275 GV  276 (325)
T ss_pred             cE
Confidence            64

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.14  E-value=7.8e-09  Score=104.99  Aligned_cols=147  Identities=14%  Similarity=0.235  Sum_probs=111.9

Q ss_pred             CCEEEEEECCCcEEEEECC-CCceeEEeeCCC-CCcEEEEEEccCCCeEEE-EEeCCCeEEEEECCCCCc-eeEEeccCC
Q 008356            6 DEHLASISLSGDLILHNLA-SGAKAAELKDPN-EQVLRVLDYSRNSRHLLV-TAGDDGTLHLWDTTGRSP-KVSWLKQHS   81 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~-tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLa-Tgs~DGtV~VWDl~t~~~-~v~~l~~H~   81 (568)
                      .++|++. ..+.|+||... +.+.++.+.... ...+.+++-..+.. +|+ =|-.-|.|+|-|+..... .-..+.+|.
T Consensus       104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~  181 (346)
T KOG2111|consen  104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD  181 (346)
T ss_pred             CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence            3455555 36789999986 556666554322 22233333222222 343 355679999999976553 246789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGt-V~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ..|.|++.+-+|..+|+++..|+ |||||.+++..+..+.   ....|.|++|+|+..+|++.+..|+|+||.++..
T Consensus       182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999999997 7899999999998884   4567999999999999999999999999999864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=1.7e-09  Score=123.08  Aligned_cols=189  Identities=14%  Similarity=0.185  Sum_probs=146.5

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEE---EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV---LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~---Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      -+...++.+..++.+.+||...+.....+.........+   +-++++. -++++|+--+.|.+|+.......+ .+.+|
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~-~l~GH  174 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI-RLKGH  174 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc-eeccc
Confidence            356788889999999999998877776666432222222   2233333 378889999999999997554333 68999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--EeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~--~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      .+.|.++.|+-|+++++++++|+.+++|++.+.+...  .++|..++..++|.|+  .+++++.|.+.++|+.+...  +
T Consensus       175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l  250 (967)
T KOG0974|consen  175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--L  250 (967)
T ss_pred             CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--e
Confidence            9999999999999999999999999999999987654  4589999999999998  99999999999999776542  2


Q ss_pred             EEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          159 TVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       159 ~~l~~~~h~-~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ..+.  +|. ..|..++.++            +..++++++.|+.+++||+....
T Consensus       251 ~~y~--~h~g~~iw~~~~~~------------~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  251 EVYD--EHSGKGIWKIAVPI------------GVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             hhhh--hhhhcceeEEEEcC------------CceEEEeeccCcchhhhhhhccc
Confidence            3343  443 4588888777            45667777889999999986543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.13  E-value=4.2e-10  Score=120.32  Aligned_cols=94  Identities=21%  Similarity=0.248  Sum_probs=82.4

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 008356           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS  116 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v  116 (568)
                      .+.|+.++|++||+ +|++.++||.++|||..+.+ ++..++..-+...|++|+|||++|++|++|.-|.||.+...+.+
T Consensus       290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cccccceeEcCCCc-eEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence            34678899999998 79999999999999998876 34555666778999999999999999999999999999998887


Q ss_pred             eEe-ecCCCeEEEEEec
Q 008356          117 SCI-TYEAPFSSLAFID  132 (568)
Q Consensus       117 ~~~-~h~~~ItsLafsP  132 (568)
                      ..- +|+.+|..++|+|
T Consensus       368 ARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EeccccccceeeEeecc
Confidence            664 7999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=9.7e-10  Score=113.93  Aligned_cols=167  Identities=13%  Similarity=0.136  Sum_probs=134.1

Q ss_pred             CEEEEEECC--CcEEEEECCCCceeEEeeCCCC--------CcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            7 EHLASISLS--GDLILHNLASGAKAAELKDPNE--------QVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         7 ~~LasGs~D--G~V~VWDl~tg~~v~~l~~~h~--------~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      ..+++||..  ..+.|||+++.+.+.+-++...        -.++++.|.+.. .+.|+++..-+.|++||.+.+..++.
T Consensus       162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            356679988  8899999998866555443222        235677787651 33799999999999999998877788


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .+.--..+|+++...|+++.|++|..-+.+..||++.++.... + +..+.|+++..+|...+|++++-|+.|+|||+++
T Consensus       242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            8888889999999999999999999999999999999988766 3 5788999999999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEcc
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      .+...+++    -...++++.+.+
T Consensus       322 rkll~kvY----vKs~lt~il~~~  341 (412)
T KOG3881|consen  322 RKLLHKVY----VKSRLTFILLRD  341 (412)
T ss_pred             chhhhhhh----hhccccEEEecC
Confidence            64332322    234566666655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.13  E-value=2.9e-09  Score=122.61  Aligned_cols=204  Identities=12%  Similarity=0.135  Sum_probs=141.6

Q ss_pred             CCCCEEEEEECCCcEEEEECCCC--c-----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e--
Q 008356            4 CKDEHLASISLSGDLILHNLASG--A-----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K--   73 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg--~-----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~--   73 (568)
                      +++.++++|+.||+|++||+..-  .     ....+.. ....+.++..++.+. .+|.++.||.|++.+++.... .  
T Consensus      1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred             CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccce
Confidence            45589999999999999998531  1     1122221 456788899999887 688889999999999976221 1  


Q ss_pred             ---eEEeccC--CCCeEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcC
Q 008356           74 ---VSWLKQH--SAPTAGISFSS-DDK-IIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        74 ---v~~l~~H--~~~VtslafsP-dg~-~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~D  143 (568)
                         .+....+  ...|..-+|.. ... .++.+..-+.|..||++.......++   ..+.|++++.+|.++++++|+..
T Consensus      1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred             eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence               1112222  22344444544 334 78888889999999999877665553   46789999999999999999999


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec-CCCcEEcCCCCCCCccccccc
Q 008356          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s-~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                      |.+.+||+|-+ .++...+ +++..+++.+..+|-.+        .....+.++. ..+.|.+|++........+..
T Consensus      1217 G~l~lWDLRF~-~~i~sw~-~P~~~~i~~v~~~~~~~--------~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1217 GQLVLWDLRFR-VPILSWE-HPARAPIRHVWLCPTYP--------QESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             ceEEEEEeecC-ceeeccc-CcccCCcceEEeeccCC--------CCceEEEecccCCCceeeeecccCcceEEEEc
Confidence            99999999976 3444443 35668899888887422        1122333333 578899999877655444443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.12  E-value=5.2e-09  Score=113.28  Aligned_cols=199  Identities=16%  Similarity=0.089  Sum_probs=151.1

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCC--CCCcEEEEEEcc-------------------CCCeEEEEEeCCCe
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSR-------------------NSRHLLVTAGDDGT   61 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~--h~~~Vs~Lafsp-------------------dg~~lLaTgs~DGt   61 (568)
                      .|-..++|....||.++|||...++...+|...  -.+...+..|.-                   .+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            455689999999999999999999887777542  244555566631                   12336788899999


Q ss_pred             EEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEE
Q 008356           62 LHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        62 V~VWDl~t~~~~v~~l-~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~Las  139 (568)
                      |.+|++..++...... ..|.+.|+++.++.+-..|.+++.|..+.+|+...++.++.. .....+.+++++||+.+|++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999887443333 579999999999999999999999999999999999888877 45667899999999999999


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++  +.|++||+++.+ .+..+.  +|.++|+++.|--+     .. ...+..+|-+...++.+.+|-+..-.
T Consensus       162 as--~~ik~~~~~~ke-vv~~ft--gh~s~v~t~~f~~~-----~~-g~~G~~vLssa~~~r~i~~w~v~~~~  223 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKE-VVITFT--GHGSPVRTLSFTTL-----ID-GIIGKYVLSSAAAERGITVWVVEKED  223 (541)
T ss_pred             cc--ceEEEEEccCce-EEEEec--CCCcceEEEEEEEe-----cc-ccccceeeeccccccceeEEEEEccc
Confidence            87  589999999984 334444  89999999999765     00 01122333334457778888766533

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=3e-09  Score=115.90  Aligned_cols=168  Identities=16%  Similarity=0.197  Sum_probs=115.6

Q ss_pred             CccCCCCEEEEE-ECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCceeE
Q 008356            1 MYNCKDEHLASI-SLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasG-s~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW--Dl~t~~~~v~   75 (568)
                      +|+|||++|+.. ..+|  .|++||+.+++......  +...+....|+|+++.++++...++...||  |+.++.  ..
T Consensus       249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~  324 (429)
T PRK03629        249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQ  324 (429)
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eE
Confidence            489999988865 4455  58999998876544333  233556789999998655555555554444  666654  33


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCe---EEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR---VVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~---V~VW  149 (568)
                      .+..+...+.+..|+||+++|+..+.+   ..|++||+.+++... +..........|+|||++|+..+.++.   +.++
T Consensus       325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            444444556788999999999877644   368899998886543 322223456789999999999887764   7778


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ++....  ...+.  .|.+.+...+|+|
T Consensus       404 ~~~G~~--~~~l~--~~~~~~~~p~Wsp  427 (429)
T PRK03629        404 STDGRF--KARLP--ATDGQVKFPAWSP  427 (429)
T ss_pred             ECCCCC--eEECc--cCCCCcCCcccCC
Confidence            886552  23343  5777888899987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.9e-08  Score=109.73  Aligned_cols=161  Identities=16%  Similarity=0.188  Sum_probs=115.1

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~   94 (568)
                      .|.++|.. +.....+.. +...+...+|+|+|+.++++...  +..|++||+.++.  ...+..+.+.+.+..|+||++
T Consensus       183 ~l~~~d~d-g~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             EEEEECCC-CCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCC
Confidence            68888874 444455554 55678889999999855454432  4689999998876  344556667788999999998


Q ss_pred             EEE-EEeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 008356           95 IIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        95 ~La-Sgs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      .|+ +.+.++  .|++||+.+++......+........|+|||+.|+..+. +|  .|++||+.+.. . +.+.  .+..
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~-~~lt--~~~~  334 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-P-RRIS--FGGG  334 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-e-EEee--cCCC
Confidence            875 445555  488889998876555455556678999999999888764 33  68888887653 2 3332  2345


Q ss_pred             CeeEEEEccCCCeEEEe
Q 008356          169 AVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       169 ~VtsLafspdg~~Las~  185 (568)
                      .+....|+|+|++|+..
T Consensus       335 ~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             cccCeEECCCCCEEEEE
Confidence            56778999999888765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=4.7e-10  Score=117.13  Aligned_cols=158  Identities=22%  Similarity=0.272  Sum_probs=116.7

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT  120 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~  120 (568)
                      .+++|+.+|. .+++++.||++|||+...... +.....|...|.+++|+||+++|++.+.| ..+|||++++..+....
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            5789999998 899999999999999866653 55677888999999999999999999999 89999999997766553


Q ss_pred             ---cCCCeEEEEEecCC---CE--EEEEEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          121 ---YEAPFSSLAFIDDD---WI--LTAGTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       121 ---h~~~ItsLafsPdg---~~--LasGs~DG~V~VWDlrt~~~--~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                         .+..+..|.|..|+   .+  ++.-..-+.|+.||+.....  ..+..+.......|.+++.+.+|++++.+     
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-----  299 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG-----  299 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-----
Confidence               44557788888876   22  23333445677777654322  11111111234579999999988887776     


Q ss_pred             CeEEEEecCCCcEEcCCCCCCCc
Q 008356          191 ETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                             ++||.|.|++......
T Consensus       300 -------T~dGsVai~~~~~lq~  315 (398)
T KOG0771|consen  300 -------TMDGSVAIYDAKSLQR  315 (398)
T ss_pred             -------ccCCcEEEEEeceeee
Confidence                   4588888888766543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=6.8e-09  Score=111.96  Aligned_cols=196  Identities=17%  Similarity=0.227  Sum_probs=135.2

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEE----------------------ee------CC------CC----CcEEE
Q 008356            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAE----------------------LK------DP------NE----QVLRV   42 (568)
Q Consensus         2 fSpdG~~L-asGs~DG~V~VWDl~tg~~v~~----------------------l~------~~------h~----~~Vs~   42 (568)
                      .+|||+|+ |+|...-.|++||+.+-.+..+                      ++      -|      +.    ..-++
T Consensus        59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRD  138 (703)
T KOG2321|consen   59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRD  138 (703)
T ss_pred             ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcc
Confidence            47999986 5566788999999875432100                      00      00      00    01123


Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec-
Q 008356           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-  121 (568)
Q Consensus        43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h-  121 (568)
                      ++++.-... |+.++....|+-+++..+.- +.-+....+.+++|..++-..+|++|+.+|.|..||.++...+..+.. 
T Consensus       139 m~y~~~scD-ly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  139 MKYHKPSCD-LYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             ccccCCCcc-EEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence            444433332 44555556677778877652 445556668899999999999999999999999999998877666532 


Q ss_pred             ------CC-----CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          122 ------EA-----PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       122 ------~~-----~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                            .+     .|+++.|+.+|-.+++|+.+|.|.|||+|.... + .+..++..-+|..+.|.+.          ++
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l-~~kdh~~e~pi~~l~~~~~----------~~  284 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-L-LVKDHGYELPIKKLDWQDT----------DQ  284 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-e-eecccCCccceeeeccccc----------CC
Confidence                  22     399999999999999999999999999999853 2 2343455678999999874          23


Q ss_pred             CeEEEEecCCCcEEcCCCCCCC
Q 008356          191 ETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +..+++.. ...++|||-....
T Consensus       285 q~~v~S~D-k~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  285 QNKVVSMD-KRILKIWDECTGK  305 (703)
T ss_pred             CceEEecc-hHHhhhcccccCC
Confidence            33444433 6789999976544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.05  E-value=7.8e-09  Score=112.76  Aligned_cols=188  Identities=13%  Similarity=0.171  Sum_probs=135.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCC---------------------------------------CcEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNE---------------------------------------QVLR   41 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~---------------------------------------~~Vs   41 (568)
                      +|+.||+++|+|+.|..|.||+..-.   ..++-.|.                                       ..|.
T Consensus        60 Ays~dGkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~  136 (1081)
T KOG1538|consen   60 AYAKDGKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII  136 (1081)
T ss_pred             EEccCCceeccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence            58999999999999999999985311   11111122                                       2355


Q ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--ccCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc
Q 008356           42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--KQHSAPTAGISFSSDD-----KIIASVGLDKKLYTYDPGSRR  114 (568)
Q Consensus        42 ~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l--~~H~~~VtslafsPdg-----~~LaSgs~DGtV~IWDlrt~~  114 (568)
                      +++|..||+ +|+.|-.||+|.|-+-.+.+ .+..-  -+...+|.+++|+|..     ..+++.....++.+|.+....
T Consensus       137 ~CsWtnDGq-ylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  137 CCSWTNDGQ-YLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ  214 (1081)
T ss_pred             EeeecCCCc-EEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence            667777887 89999999999998765443 23322  3467899999999832     577888888888888876543


Q ss_pred             eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 008356          115 PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL  194 (568)
Q Consensus       115 ~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~L  194 (568)
                      .-..-...-...|+.+.++|.+++.|+.|+.+++|--++-  .+-.+.  ....+|+.++.+|++++.+.+         
T Consensus       215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--rLGTvg--~~D~WIWtV~~~PNsQ~v~~G---------  281 (1081)
T KOG1538|consen  215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--RLGTVG--EQDSWIWTVQAKPNSQYVVVG---------  281 (1081)
T ss_pred             ecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe--EEeecc--ccceeEEEEEEccCCceEEEE---------
Confidence            3223344556779999999999999999999999975542  122222  345789999999987665544         


Q ss_pred             EEecCCCcEEcCCCC
Q 008356          195 LGGAVGDSILMPDPL  209 (568)
Q Consensus       195 ls~s~Dg~V~VWDlr  209 (568)
                         +.||+|..|++-
T Consensus       282 ---CqDGTiACyNl~  293 (1081)
T KOG1538|consen  282 ---CQDGTIACYNLI  293 (1081)
T ss_pred             ---EccCeeehhhhH
Confidence               669999888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=1e-08  Score=111.76  Aligned_cols=168  Identities=18%  Similarity=0.204  Sum_probs=113.0

Q ss_pred             CccCCCCEEEE-EECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356            1 MYNCKDEHLAS-ISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~Las-Gs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~   75 (568)
                      +|+|||+.|+. .+.+|  .|++||+.+++.. .+.. +......++|+|+++.++++...+|.  |+++|+.+++  ..
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~  329 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AE  329 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eE
Confidence            48999998764 45555  5999999887653 3443 33344568999999865555555665  6666776655  23


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW  149 (568)
                      .+..+......++|+|++++|+....++   .|.+||+.+++.. .+.+........|+|||++|+....+   +.|.++
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            3333344456789999999998775443   6999999887755 44344345667999999988877653   458888


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ++....  ...+.  .+.+.+...+|+|
T Consensus       409 ~~~g~~--~~~l~--~~~g~~~~p~wsp  432 (433)
T PRK04922        409 STDGRV--RQRLV--SADGEVREPAWSP  432 (433)
T ss_pred             ECCCCc--eEEcc--cCCCCCCCCccCC
Confidence            886542  23333  3446677777876

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.03  E-value=4.9e-09  Score=116.54  Aligned_cols=188  Identities=13%  Similarity=0.175  Sum_probs=134.9

Q ss_pred             CEEEEEECCCcEEEEECCCCce------eEEee-----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---
Q 008356            7 EHLASISLSGDLILHNLASGAK------AAELK-----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---   72 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~------v~~l~-----~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---   72 (568)
                      .-+++++.||.|..|+++.-..      .....     ......+.+++|.+...+.|+.|+++|.|.--+-.+...   
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            5588899999999998753221      10111     012345778999999888999999999998844332221   


Q ss_pred             ----eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCC
Q 008356           73 ----KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNG  144 (568)
Q Consensus        73 ----~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlr-t~~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG  144 (568)
                          .+.....|.++|+++.++| ..+.+++++ |.+|+||... ...++..+ .+...+.+++|+|. ..+++++..||
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence                1335667899999999999 555566666 9999999987 55666555 45566999999995 46888899999


Q ss_pred             eEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          145 RVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       145 ~V~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .|.+||+.... .|.....  .+....+.+.|+++|+.|+++            ...|.+.+|++.
T Consensus       465 ~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavG------------d~~G~~~~~~l~  516 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVG------------DANGTTHILKLS  516 (555)
T ss_pred             ceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEe------------cCCCcEEEEEcC
Confidence            99999998642 2333333  235667778888877766665            458999999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.02  E-value=3.6e-10  Score=125.56  Aligned_cols=231  Identities=13%  Similarity=0.118  Sum_probs=151.7

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      ++.+.+|...|+|+.|...|.+|++|++|..|+||...++.++... +|.+.|+.++.+.++.++++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            3456789999999999999999999999999999999999888777 799999999999999999999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCccc
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRS  232 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~  232 (568)
                      .. .++.++.  +|.+.|++++|+|.                .+.+.||++++||.| +.++-...  .+.......+..
T Consensus       263 ~~-~pvsvLr--ghtgavtaiafsP~----------------~sss~dgt~~~wd~r-~~~~~y~p--rp~~~~~~~~~~  320 (1113)
T KOG0644|consen  263 DG-APVSVLR--GHTGAVTAIAFSPR----------------ASSSDDGTCRIWDAR-LEPRIYVP--RPLKFTEKDLVD  320 (1113)
T ss_pred             CC-chHHHHh--ccccceeeeccCcc----------------ccCCCCCceEecccc-ccccccCC--CCCCccccccee
Confidence            87 5777777  99999999999994                245669999999988 22211110  000000001100


Q ss_pred             ----CCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCc-----ccccccCcC
Q 008356          233 ----GPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL-----DKLWDGHEG  303 (568)
Q Consensus       233 ----sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~-----~~~w~~~~~  303 (568)
                          -..|. .........+...++..+....-+.-            ++.-++.  |...++++.     ...|...+|
T Consensus       321 s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~~~~~l------------if~t~ss--d~~~~~~~ar~~~~~~vwnl~~g  385 (1113)
T KOG0644|consen  321 SILFENNGD-RFLTGSRDGEARNHEFEQLAWRSNLL------------IFVTRSS--DLSSIVVTARNDHRLCVWNLYTG  385 (1113)
T ss_pred             eeecccccc-ccccccCCcccccchhhHhhhhccce------------EEEeccc--cccccceeeeeeeEeeeeecccc
Confidence                00011 00000111111111111111110000            1111222  333344322     567999999


Q ss_pred             cccccccCCCCCCccc-cCCCCcccccccCCCceeeeee
Q 008356          304 AKKDHLPIDKKPSSML-FPSSSRRFPYAEDGSNEHSVFD  341 (568)
Q Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  341 (568)
                      ...-.+-++..++.+| ++--+.|+.-.-.-..-.-|||
T Consensus       386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd  424 (1113)
T KOG0644|consen  386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD  424 (1113)
T ss_pred             hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence            9988899999999899 7766776555544444455676

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=6.4e-09  Score=116.74  Aligned_cols=220  Identities=14%  Similarity=0.130  Sum_probs=155.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--C-ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS--G-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t--g-~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      ++||+++++|+|..||.|.+|.--.  + ...+.+-.-|...|.++.|+++|. +|++|+..|.+.+|.+.+++  .+.+
T Consensus       212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~--kqfL  288 (792)
T KOG1963|consen  212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK--KQFL  288 (792)
T ss_pred             EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC--cccc
Confidence            4799999999999999999997322  1 222233223667889999999998 89999999999999999887  5667


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee------------cCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~------------h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      ..-..+|..+.++||+.+.+.+..|..|.+....+......+.            ..+-.+.++++|.-+.++..+..|.
T Consensus       289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~  368 (792)
T KOG1963|consen  289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH  368 (792)
T ss_pred             cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence            8888999999999999999999999999998876554433331            1334678899997788888999999


Q ss_pred             EEEEECCCCCCceEEEe--ecC------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          146 VVFYDIRGKPQPLTVLR--ACS------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~--~~~------h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      |.+||+-+.....+...  ...      +...++.++.+..|.++++.-...+.  .......-.+++|-..+-...-.+
T Consensus       369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~--~~~~~~e~~LKFW~~n~~~kt~~L  446 (792)
T KOG1963|consen  369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDK--FNFFDGEVSLKFWQYNPNSKTFIL  446 (792)
T ss_pred             EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehh--hhccCceEEEEEEEEcCCcceeEE
Confidence            99999988654433221  111      23357788888889999887322111  111122456788876554433333


Q ss_pred             cccccccC
Q 008356          218 SLSTAVSG  225 (568)
Q Consensus       218 ~~s~~~~~  225 (568)
                      .+....|+
T Consensus       447 ~T~I~~PH  454 (792)
T KOG1963|consen  447 NTKINNPH  454 (792)
T ss_pred             EEEEecCC
Confidence            33333333

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=6.6e-08  Score=105.46  Aligned_cols=195  Identities=13%  Similarity=0.122  Sum_probs=119.2

Q ss_pred             CccCCCCEEE---EEECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCC-
Q 008356            1 MYNCKDEHLA---SISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGR-   70 (568)
Q Consensus         1 afSpdG~~La---sGs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~-   70 (568)
                      .|+|||+.++   +...+|  .|++.++..++......  ..+.....+|+|||++++++...+|    .+.+|++..+ 
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~  268 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA  268 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence            4899997532   333343  58888988776433322  2233445799999997666665434    3445776542 


Q ss_pred             -CceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-CceeeEe-ecCCCeEEEEEecCCCEEEEEEcC-
Q 008356           71 -SPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK--LYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSN-  143 (568)
Q Consensus        71 -~~~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGt--V~IWDlrt-~~~v~~~-~h~~~ItsLafsPdg~~LasGs~D-  143 (568)
                       .........+.......+|+|||+.|+..+ .+|.  |+++++.. +.....+ .....+....|+|||+.|+....+ 
T Consensus       269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~  348 (428)
T PRK01029        269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK  348 (428)
T ss_pred             CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence             111222223334456789999999887765 4564  55555542 2223333 344567789999999998876543 


Q ss_pred             --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       144 --G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                        ..|.+||+.++..  ..+.  .....+....|+|+|++|+.....         .....|.++|+..
T Consensus       349 g~~~I~v~dl~~g~~--~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~---------~g~~~L~~vdl~~  404 (428)
T PRK01029        349 GVRQICVYDLATGRD--YQLT--TSPENKESPSWAIDSLHLVYSAGN---------SNESELYLISLIT  404 (428)
T ss_pred             CCcEEEEEECCCCCe--EEcc--CCCCCccceEECCCCCEEEEEECC---------CCCceEEEEECCC
Confidence              4699999987742  3332  223456789999998887654221         1245666777644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=1.3e-07  Score=102.88  Aligned_cols=191  Identities=15%  Similarity=0.097  Sum_probs=125.5

Q ss_pred             CccCCCCE-EEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCcee
Q 008356            1 MYNCKDEH-LASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpdG~~-LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v   74 (568)
                      .|+|||+. ++..+.+   ..|+++|+.+++......  ..+.+....|+|||+.++++...+  ..|+++|+.++.  .
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~--~  269 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT--L  269 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--E
Confidence            48999985 6654433   569999998887654443  344555678999999777777655  458888887765  3


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC--------
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------  143 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~D-G--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D--------  143 (568)
                      ..+..+........|+|||+.|+..+.. +  .|+++|+.+++..+.......  ...|+|||+.|+.....        
T Consensus       270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~  347 (419)
T PRK04043        270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN  347 (419)
T ss_pred             EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence            4454444434556899999988776633 2  688999988776544432222  24899999998877653        


Q ss_pred             -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCc
Q 008356          144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS  202 (568)
Q Consensus       144 -G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~  202 (568)
                       ..|.+.|+.++.  .+.+..  . .......|+|||+.|+......+...|..-..||.
T Consensus       348 ~~~I~v~d~~~g~--~~~LT~--~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        348 TFNLYLISTNSDY--IRRLTA--N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CcEEEEEECCCCC--eEECCC--C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence             368888988763  233332  1 23335889999998877644444444444444443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.98  E-value=9.5e-08  Score=102.68  Aligned_cols=177  Identities=13%  Similarity=0.128  Sum_probs=117.2

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~   94 (568)
                      .|.++|.. +.....+.. +...+...+|+|+++.++++...+  ..|++||+.++.  ...+..+...+.+++|+|+++
T Consensus       171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCC
Confidence            58888875 333444543 444567789999999544443333  479999998775  333445666677899999998


Q ss_pred             EEEEE-eCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCCCC
Q 008356           95 IIASV-GLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        95 ~LaSg-s~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G--~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      .|+.. ..++  .|++||+.+++......+........|+|+|+.|+..+.. +  .|+++|+.+.+  ...+.  .+..
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~--~~~~  322 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLT--FRGG  322 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEee--cCCC
Confidence            77644 4444  6999999987665554455555678999999988876643 3  58888887653  22232  3445


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .+..+.|+|+|++++......         ....|.+||+..
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~---------~~~~i~~~d~~~  355 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREG---------GGFNIAVMDLDG  355 (417)
T ss_pred             CccCeEECCCCCEEEEEEccC---------CceEEEEEeCCC
Confidence            677889999988776652211         123567777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=5.3e-08  Score=106.05  Aligned_cols=179  Identities=9%  Similarity=0.056  Sum_probs=111.4

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~   94 (568)
                      .|.++|. ++.....+.. +...+...+|+|+++.++++...+  ..|++||+.+++.  ..+......+.+..|+||++
T Consensus       177 ~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        177 QLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             EEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            5777776 4544444543 456677899999998544444333  4599999988763  33444445567899999999


Q ss_pred             EEE-EEeCCCeEE--EEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCceEEEeecCCCCCe
Q 008356           95 IIA-SVGLDKKLY--TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAV  170 (568)
Q Consensus        95 ~La-Sgs~DGtV~--IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~v~~l~~~~h~~~V  170 (568)
                      .|+ +.+.++...  ++|+..+.......+........|+|||+.|+..+. +|...||.++........+.  .+....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~~g~~~  330 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--FTGSYN  330 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe--cCCCCc
Confidence            886 456677644  455655554333344455667899999998887654 45666665542211122232  122334


Q ss_pred             eEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          171 SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       171 tsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ...+|+|+|++|+......         .+..|.+||+..
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~---------g~~~I~v~d~~~  361 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVG---------GAFKLYVQDLAT  361 (427)
T ss_pred             CceEECCCCCEEEEEEccC---------CcEEEEEEECCC
Confidence            5678999999887653211         123678888754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=4.9e-09  Score=112.88  Aligned_cols=118  Identities=20%  Similarity=0.329  Sum_probs=99.4

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IW  108 (568)
                      |.+.|+.+.|.+... .|++++.||+|++|+++..       ..++..+++|.++|.|+++.+++.++++|+.||+|+.|
T Consensus       293 ~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             chhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            667788899999887 7999999999999999321       13477899999999999999999999999999999999


Q ss_pred             ECCCC------c---e-ee-EeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356          109 DPGSR------R---P-SS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       109 Dlrt~------~---~-v~-~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ++...      .   . .. ..+|.+.++.++++.....|++++.||+|++|+....
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            66421      1   1 12 2379999999999999999999999999999998754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=4.6e-08  Score=106.72  Aligned_cols=174  Identities=17%  Similarity=0.197  Sum_probs=111.8

Q ss_pred             CccCCCCEEEEEEC-CC--c--EEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCC
Q 008356            1 MYNCKDEHLASISL-SG--D--LILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRS   71 (568)
Q Consensus         1 afSpdG~~LasGs~-DG--~--V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW--Dl~t~~   71 (568)
                      +|+|||++|+.... +|  .  +.+|++..+  .....+...........+|+|||+.++++...+|...||  ++....
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            48999999887653 23  3  344676643  122233322223345679999999666666667765555  443221


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc---CCe
Q 008356           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGR  145 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~  145 (568)
                      .....+..+...+....|+|||++|+....+   ..|++||+.+++..........+....|+|||++|+....   ...
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~  396 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE  396 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence            1234455555667889999999999877643   3799999998876555444456778999999998876543   356


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspd  178 (568)
                      |++||+.+.+ . ..+.  ...+.+...+|+|.
T Consensus       397 L~~vdl~~g~-~-~~Lt--~~~g~~~~p~Ws~~  425 (428)
T PRK01029        397 LYLISLITKK-T-RKIV--IGSGEKRFPSWGAF  425 (428)
T ss_pred             EEEEECCCCC-E-EEee--cCCCcccCceecCC
Confidence            8888988763 2 2222  23455667788874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.96  E-value=1.9e-07  Score=100.07  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=119.2

Q ss_pred             CCEEEE-EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            6 DEHLAS-ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         6 G~~Las-Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      ++++++ -..+|.|.|.|..+.+.+..+.... .....+.|++|++ ++++++.||.|.++|+.+.+ .+..++... ..
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~-~v~~i~~G~-~~   80 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK-VVATIKVGG-NP   80 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS-EEEEEE-SS-EE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCC-EEEEEcCCCeEEEEECCccc-EEEEEecCC-Cc
Confidence            345544 4568999999999999999998633 3334478999999 67777899999999999888 455555544 46


Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeEeec--------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 008356           85 AGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGK  154 (568)
Q Consensus        85 tslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h--------~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~  154 (568)
                      .++++++||++++++. .++.|.++|.++.+++..+..        ..++..+..+|....+++.-. .+.|.+.|....
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            8899999999988775 789999999999998887732        246778888888885655554 588999998776


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      ..+....  ...........|+|+++|++.+..
T Consensus       161 ~~~~~~~--i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  161 KNLKVTT--IKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             SCEEEEE--EE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             cccceee--ecccccccccccCcccceeeeccc
Confidence            4332222  124456778999999988766533

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=2.3e-08  Score=107.98  Aligned_cols=170  Identities=17%  Similarity=0.308  Sum_probs=129.8

Q ss_pred             EEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-----eEEeccCCCC
Q 008356            9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-----VSWLKQHSAP   83 (568)
Q Consensus         9 LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-----v~~l~~H~~~   83 (568)
                      |+.++....|+-++++.|+.+..+.. ..+.+++|..++... +|++|+.+|.|..||.+.....     ...+..|.+.
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~  225 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG  225 (703)
T ss_pred             EEEeecCcceEEEEcccccccccccc-ccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence            55666677899999999998888875 557889999999886 9999999999999999765521     1112234443


Q ss_pred             -----eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec--CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 008356           84 -----TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        84 -----VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h--~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~  154 (568)
                           |+++.|..+|-.+++|..+|.|.|||++..+++..-.|  .-+|..+.|.+.  ++.|++. ....++|||-.++
T Consensus       226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence                 99999998899999999999999999999998877755  457899999875  3445444 4467999999988


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      + +...+.   ....+..+|+-|++..++++
T Consensus       305 k-~~asiE---pt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  305 K-PMASIE---PTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             C-ceeecc---ccCCcCceeeecCCceEEEe
Confidence            4 333333   44568999999875554444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.91  E-value=1.5e-08  Score=102.01  Aligned_cols=182  Identities=17%  Similarity=0.143  Sum_probs=129.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeEEec
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVSWLK   78 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~~~v~~l~   78 (568)
                      |++.+..++++..+|.+.+-+.......  +..+. |+-.+...+|+....+++++|++|+.+..||++- ++...+..+
T Consensus       129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k  207 (339)
T KOG0280|consen  129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK  207 (339)
T ss_pred             eeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence            5667778888888999886554444333  35665 5566677899988888999999999999999983 333344467


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeeEeecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 008356           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt-~~~v~~~~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~  154 (568)
                      .|...|.+|.-+| .+.+|++|+.|..|++||.|+ ++++..-...+.|..++++|.  +.+|+++..+| .+|.++...
T Consensus       208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~  286 (339)
T KOG0280|consen  208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK  286 (339)
T ss_pred             eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence            8999999999988 789999999999999999995 777777677899999999994  45566666655 566666543


Q ss_pred             CCceE-EEe-ecCCCCCeeEEEEccCCCeEEEe
Q 008356          155 PQPLT-VLR-ACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       155 ~~~v~-~l~-~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ..... .+. ...|.+-+..-.|.....++++|
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC  319 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC  319 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeee
Confidence            22111 111 12455555666664433344444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.91  E-value=9.5e-09  Score=117.10  Aligned_cols=147  Identities=20%  Similarity=0.233  Sum_probs=121.4

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      +++.-++++|..-+.|.+|+....+.-..+.+ |++.|..+.|+-+|+ ++++.++|.++++|++++.+.......+|..
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccc
Confidence            34455788899999999999872222223554 888889999999998 8999999999999999988865557789999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      +|..++|.|+  .|++++.|-++++|+....+.. .+ .| ...|..++..++..++++++.|+.+++||+.+.
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            9999999987  9999999999999976644433 33 33 456999999999999999999999999999764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=1.5e-08  Score=107.63  Aligned_cols=296  Identities=17%  Similarity=0.215  Sum_probs=190.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC--ceeEEec
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS--PKVSWLK   78 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~   78 (568)
                      |+..|..|++|+.|..|.+||+..++....+...|..-|...+|-|.. ..-+++++.||.|++=.+....  .....+.
T Consensus       150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~  229 (559)
T KOG1334|consen  150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA  229 (559)
T ss_pred             ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence            788899999999999999999999998888887786666666787753 3468999999999998874332  2255677


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe----ecCC---CeEEEEEecCC-CEEEEEEcCCeEEEE
Q 008356           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEA---PFSSLAFIDDD-WILTAGTSNGRVVFY  149 (568)
Q Consensus        79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~---~ItsLafsPdg-~~LasGs~DG~V~VW  149 (568)
                      .|.++|..++.-| ..+.|.+++.|+.|.-+|++.+.+...+    .+..   ....++.+|.. +.+++|+.|-.+++|
T Consensus       230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY  309 (559)
T KOG1334|consen  230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY  309 (559)
T ss_pred             cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence            8999999999999 6778999999999999999987654433    2233   46788889854 589999999999999


Q ss_pred             ECCCCCCc-----eEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccccc
Q 008356          150 DIRGKPQP-----LTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS  220 (568)
Q Consensus       150 Dlrt~~~~-----v~~l~~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s  220 (568)
                      |.+.-...     +..++..    ...-.|++++|+.++.-            |++.-.|..|+++. +.......+.. 
T Consensus       310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE------------lLaSYnDe~IYLF~-~~~~~G~~p~~-  375 (559)
T KOG1334|consen  310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE------------LLASYNDEDIYLFN-KSMGDGSEPDP-  375 (559)
T ss_pred             cccchhhccccchhhhcCCccccccCcccceeEEecCCccc------------eeeeecccceEEec-cccccCCCCCC-
Confidence            99853211     1111100    23346889999864322            23333477788772 11111111100 


Q ss_pred             ccccCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCc---ccc
Q 008356          221 TAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL---DKL  297 (568)
Q Consensus       221 ~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~---~~~  297 (568)
                          ..+.                     .+|....+.|.        |.+-++| ..+.|-|=-..- +..|.   |-+
T Consensus       376 ----~s~~---------------------~~~~k~vYKGH--------rN~~TVK-gVNFfGPrsEyV-vSGSDCGhIFi  420 (559)
T KOG1334|consen  376 ----SSPR---------------------EQYVKRVYKGH--------RNSRTVK-GVNFFGPRSEYV-VSGSDCGHIFI  420 (559)
T ss_pred             ----Ccch---------------------hhccchhhccc--------ccccccc-eeeeccCccceE-EecCccceEEE
Confidence                0000                     11111112221        2211111 122233300000 00132   789


Q ss_pred             cccCcCcccccccCCCCCCccccCCCCcccccccCCCceeeeeeccCCCCc
Q 008356          298 WDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS  348 (568)
Q Consensus       298 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (568)
                      |+.++++++..+++|+...--|  -+--.+|..-...-+|-|=-|......
T Consensus       421 W~K~t~eii~~MegDr~VVNCL--EpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  421 WDKKTGEIIRFMEGDRHVVNCL--EPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             EecchhHHHHHhhcccceEecc--CCCCCCchhhccCCccceeeecCCccc
Confidence            9999999999999998743222  223357888888888888888654433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=7.9e-08  Score=108.14  Aligned_cols=197  Identities=13%  Similarity=0.166  Sum_probs=140.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CCceeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVS   75 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t---~~~~v~   75 (568)
                      +++.|++.+.. .+..+.+|+...+..   ......+|...++|.+++|+++ ++++|..||.|.+|.--.   .....+
T Consensus       168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t  245 (792)
T KOG1963|consen  168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCT  245 (792)
T ss_pred             EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccce
Confidence            34555555444 455788898876441   1223335666689999999998 899999999999997533   223356


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .+.-|...|+++.|+++|.+|++|+..+.+.+|.+.+++....-...++|..+.++||+.+.++...|+.|.+.......
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             EEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            77789999999999999999999999999999999999855544788999999999999999999999999999875432


Q ss_pred             CceEEEeec---------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          156 QPLTVLRAC---------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       156 ~~v~~l~~~---------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .. ..+...         ...+-.+.++++|.-+.++.+            +.-+.|.+||+..-..
T Consensus       326 ~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln------------~~~g~vQ~ydl~td~~  379 (792)
T KOG1963|consen  326 IK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN------------GHPGHVQFYDLYTDST  379 (792)
T ss_pred             hh-hhccCccCCCccccccccccceeEEEcCCCCceeec------------CCCceEEEEeccccce
Confidence            11 111100         123445677888843333333            3356666666654443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.89  E-value=1.9e-08  Score=116.10  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=126.6

Q ss_pred             EECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------eEEeccCCCCeEEEEEcCCCC
Q 008356           21 HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------VSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        21 WDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~------v~~l~~H~~~VtslafsPdg~   94 (568)
                      |++ .|..+..+.. |...+..++.++....+|++|+.||+|++||.+.-...      ..........+.++.+.+.++
T Consensus      1034 W~p-~G~lVAhL~E-hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHE-HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cceEeehhhh-ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            554 5677777776 44555567887776449999999999999998532211      122233467899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCc--e-----eeEee--cCCC-eEEEEEec-CCC-EEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356           95 IIASVGLDKKLYTYDPGSRR--P-----SSCIT--YEAP-FSSLAFID-DDW-ILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus        95 ~LaSgs~DGtV~IWDlrt~~--~-----v~~~~--h~~~-ItsLafsP-dg~-~LasGs~DG~V~VWDlrt~~~~v~~l~  162 (568)
                      .++.++.||.|++.++...+  .     .+...  ..+. +..-+|.. .+. .|+.+...+.|..||+++...... ++
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-LK 1190 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-hh
Confidence            99999999999999987621  1     11111  2222 33334433 233 788899999999999998754333 23


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       163 ~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                      .....+.|++++.+|.+.|++.|            ...|.+.+||+|=..+..+...
T Consensus      1191 ~~~~hG~vTSi~idp~~~WlviG------------ts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIG------------TSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred             cCccccceeEEEecCCceEEEEe------------cCCceEEEEEeecCceeecccC
Confidence            23455789999999987766655            4588899999986665555544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.1e-07  Score=98.17  Aligned_cols=204  Identities=13%  Similarity=0.175  Sum_probs=131.8

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCC-C---c--------eeEEeeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEEC
Q 008356            2 YNCKD-EHLASISLSGDLILHNLAS-G---A--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDT   67 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~t-g---~--------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl   67 (568)
                      |-|.+ ..|++|+.. -|.+|.... .   +        ....++......|+.+.|++||. .+++++ .|..|.|||.
T Consensus       148 wRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdp  225 (445)
T KOG2139|consen  148 WRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDP  225 (445)
T ss_pred             eccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEcC
Confidence            55554 456777655 489997642 1   1        11223333346789999999998 677776 5778999999


Q ss_pred             CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           68 TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        68 ~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr-t~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                      +++.. +.......+.+.-+.|+||+.+|+.+.-|+..++|+.. +....+..-..+.|...+|+|+|.+|+.... |.-
T Consensus       226 dtg~~-~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp  303 (445)
T KOG2139|consen  226 DTGQK-IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSP  303 (445)
T ss_pred             CCCCc-ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCc
Confidence            88763 22233455678999999999999999999999999544 3344444445569999999999988776553 344


Q ss_pred             EEEECCCCCCceE-----------EE---ee---c----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356          147 VFYDIRGKPQPLT-----------VL---RA---C----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       147 ~VWDlrt~~~~v~-----------~l---~~---~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      ++|.+.-..++..           .+   ..   .    --.+.+.+++|+|.|.+|+......+...+    ....|.+
T Consensus       304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~----~k~~i~~  379 (445)
T KOG2139|consen  304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL----CKLHISR  379 (445)
T ss_pred             eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh----hhhhhhh
Confidence            5554432111100           00   00   0    124678999999999999876332221111    1456778


Q ss_pred             CCCCCCCc
Q 008356          206 PDPLPSVT  213 (568)
Q Consensus       206 WDlr~~~~  213 (568)
                      ||.+....
T Consensus       380 fdtr~sp~  387 (445)
T KOG2139|consen  380 FDTRKSPP  387 (445)
T ss_pred             hcccccCc
Confidence            88776443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=4.9e-07  Score=98.19  Aligned_cols=161  Identities=11%  Similarity=0.097  Sum_probs=107.4

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~   94 (568)
                      .|.++|...++ ...+.. +...+....|+|+|+.++++...+  ..|++||+.+++  ...+....+.+....|+||++
T Consensus       180 ~l~~~d~~g~~-~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCC-ceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccCCCCCcCCeEECCCCC
Confidence            47777875444 344443 455677889999998655555443  369999998776  333444445566789999999


Q ss_pred             EEEE-EeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 008356           95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        95 ~LaS-gs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      .|+. ...++  .|++||+.+++......+........|+|||+.|+..+. +|  .|+++|+.++. . ..+..  ...
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~-~~lt~--~~~  331 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A-ERVTF--VGN  331 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEeec--CCC
Confidence            8874 44444  689999998876554455555667899999998877664 33  57777887653 2 22221  112


Q ss_pred             CeeEEEEccCCCeEEEe
Q 008356          169 AVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       169 ~VtsLafspdg~~Las~  185 (568)
                      ......|+|+|++++..
T Consensus       332 ~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        332 YNARPRLSADGKTLVMV  348 (430)
T ss_pred             CccceEECCCCCEEEEE
Confidence            33457899998887765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.85  E-value=2.7e-06  Score=90.11  Aligned_cols=197  Identities=13%  Similarity=0.166  Sum_probs=127.2

Q ss_pred             ccCCCCEEEEEEC-CCcEEEEECCC-CceeEE---ee---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356            2 YNCKDEHLASISL-SGDLILHNLAS-GAKAAE---LK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT   67 (568)
Q Consensus         2 fSpdG~~LasGs~-DG~V~VWDl~t-g~~v~~---l~---------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl   67 (568)
                      ++|++++|+++.. +|.|.++++.. +.....   +.         .......+++.|+|+++.++++--....|++|++
T Consensus        94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~  173 (345)
T PF10282_consen   94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI  173 (345)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence            5789999998874 89999999976 443222   21         1123557889999999965555555668999999


Q ss_pred             CCCCcee---EE-eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC--CCce--eeEee-------cCCCeEEEEEe
Q 008356           68 TGRSPKV---SW-LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG--SRRP--SSCIT-------YEAPFSSLAFI  131 (568)
Q Consensus        68 ~t~~~~v---~~-l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlr--t~~~--v~~~~-------h~~~ItsLafs  131 (568)
                      +.....+   .. ..........++|+|++++++... .++.|.+|++.  ++..  +..+.       .......|+++
T Consensus       174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is  253 (345)
T PF10282_consen  174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS  253 (345)
T ss_dssp             -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred             eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence            7654211   11 223455689999999999886554 67789999988  4432  22221       11257899999


Q ss_pred             cCCCEEEEEE-cCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          132 DDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       132 Pdg~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |||++|++.. .++.|.+|+++.....+..+... ......+.+.++|+|++|+.+           ...++.|.+|++.
T Consensus       254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-----------~~~s~~v~vf~~d  322 (345)
T PF10282_consen  254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-----------NQDSNTVSVFDID  322 (345)
T ss_dssp             TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-----------ETTTTEEEEEEEE
T ss_pred             cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-----------ecCCCeEEEEEEe
Confidence            9999988876 46789999995432223333322 223458899999987776554           3346667777653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=5.8e-07  Score=98.67  Aligned_cols=161  Identities=14%  Similarity=0.115  Sum_probs=105.9

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~   94 (568)
                      .|.++|....+. ..+.. ....+....|+|+|+.++++...++  .|++||+.+++.  ..+...........|+||++
T Consensus       199 ~l~i~d~dG~~~-~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence            577778644433 33333 4556777899999996655555544  588889987763  22333333445789999999


Q ss_pred             EEEE-EeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 008356           95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        95 ~LaS-gs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      .|+. ...++  .|++||+.+++......+.......+|+|||++|+..+. ++  .|+++|+.+++  ...+..  +..
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~--~g~  350 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTF--EGE  350 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEec--CCC
Confidence            8865 45556  488889988876555455556678899999998877654 33  46777777653  232321  222


Q ss_pred             CeeEEEEccCCCeEEEe
Q 008356          169 AVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       169 ~VtsLafspdg~~Las~  185 (568)
                      .....+|+|+|++|+..
T Consensus       351 ~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        351 QNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CCcCeeECCCCCEEEEE
Confidence            33457899998887665

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=1.7e-06  Score=92.75  Aligned_cols=210  Identities=13%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc--
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ--   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~--   79 (568)
                      |++||+++++++.||.|.++|+.+++.+.+++.  ......++++++|+.++++....+.|.++|..+.+. +..+..  
T Consensus        44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~  120 (369)
T PF02239_consen   44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGG  120 (369)
T ss_dssp             -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--E
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeeccccc
Confidence            789999999999999999999999999999985  345677999999996666666899999999988874 444332  


Q ss_pred             -----CCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcee--eEeecCCCeEEEEEecCCCEEEEE-EcCCeEEEEE
Q 008356           80 -----HSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYD  150 (568)
Q Consensus        80 -----H~~~VtslafsPdg~~LaS-gs~DGtV~IWDlrt~~~v--~~~~h~~~ItsLafsPdg~~LasG-s~DG~V~VWD  150 (568)
                           ...++..+..++....++. .-+.+.|.+.|....+.+  ..+..........|+|++++++++ ..++.|-++|
T Consensus       121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence                 2346788888887775554 455689999998876544  344566778889999999987775 4677899999


Q ss_pred             CCCCCCceEEEee--cCCCCCeeEEEEccC-CCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          151 IRGKPQPLTVLRA--CSSSEAVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       151 lrt~~~~v~~l~~--~~h~~~VtsLafspd-g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                      .++.+. +..+..  ..|..++..+- ||. |....+.+.  . ...++.-....+.+||...+........
T Consensus       201 ~~~~k~-v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~--~-~~~~~~ig~~~v~v~d~~~wkvv~~I~~  267 (369)
T PF02239_consen  201 TKTGKL-VALIDTGKKPHPGPGANFP-HPGFGPVWATSGL--G-YFAIPLIGTDPVSVHDDYAWKVVKTIPT  267 (369)
T ss_dssp             TTTTEE-EEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBS--S-SSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred             eccceE-EEEeecccccccccccccc-CCCcceEEeeccc--c-ceecccccCCccccchhhcCeEEEEEEC
Confidence            988643 333321  23555565553 443 233333311  1 2222222245666788887776555443

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=9.6e-08  Score=98.01  Aligned_cols=195  Identities=14%  Similarity=0.191  Sum_probs=132.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEeeCCC-----------CCcEEEEEEccCCC-eEEEEEeCCCeEEE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNSR-HLLVTAGDDGTLHL   64 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h-----------~~~Vs~Lafspdg~-~lLaTgs~DGtV~V   64 (568)
                      |...|++||+|..+|.|.+|.-+...     ....++.|.           .+.|..+.|.++++ ..++....|.+|++
T Consensus        33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl  112 (433)
T KOG1354|consen   33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL  112 (433)
T ss_pred             eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence            67789999999999999999754322     222333321           34577899988753 35677789999999


Q ss_pred             EECCCCCce-----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356           65 WDTTGRSPK-----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (568)
Q Consensus        65 WDl~t~~~~-----------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD  109 (568)
                      |.+......                                   ...-.+|.--|+++.++.|+..++++. |=.|.+|+
T Consensus       113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWn  191 (433)
T KOG1354|consen  113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWN  191 (433)
T ss_pred             eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeecc
Confidence            998432210                                   112235777899999999998888765 66799999


Q ss_pred             CCCCc-eeeEe---ec-----CCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCce---EEEeec----------CC
Q 008356          110 PGSRR-PSSCI---TY-----EAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPL---TVLRAC----------SS  166 (568)
Q Consensus       110 lrt~~-~v~~~---~h-----~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v---~~l~~~----------~h  166 (568)
                      ++--. ...++   ++     ...|++..|+|. .++++..+..|.|++.|+|....+-   +.+...          .-
T Consensus       192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei  271 (433)
T KOG1354|consen  192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI  271 (433)
T ss_pred             ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence            87432 22222   22     245899999995 6788888899999999999532110   111100          11


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      -..|..+.|+++|+||++-             .--+|++||+..
T Consensus       272 IsSISDvKFs~sGryilsR-------------Dyltvk~wD~nm  302 (433)
T KOG1354|consen  272 ISSISDVKFSHSGRYILSR-------------DYLTVKLWDLNM  302 (433)
T ss_pred             hhhhhceEEccCCcEEEEe-------------ccceeEEEeccc
Confidence            2357889999999888776             137899999943

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.77  E-value=4.7e-07  Score=90.48  Aligned_cols=200  Identities=16%  Similarity=0.134  Sum_probs=134.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      +..+||.||..|...+|.+.+.+....+-..+...|.-+.=.-+...-+..++.|.++++.++............. -.+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~  161 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQ  161 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cce
Confidence            3457899999999999999866543333222322222111111222246778899999999987665322221111 238


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      +.+.+++|++++++.+....|..|.+....  .+.+.  ...+.-.+..|+.....+|++..||.+.|||+|....+...
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            899999999999999999999999987532  22211  34455668889999999999999999999999987555443


Q ss_pred             Ee--ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356          161 LR--ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (568)
Q Consensus       161 l~--~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~  215 (568)
                      ..  ...|.+.++.+.|++-|.         .+.++++ -.-+.+.+-|+|.+....
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~---------lDLLf~s-Ehfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGL---------LDLLFIS-EHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCc---------ceEEEEe-cCcceEEEEEcccCceee
Confidence            32  235899999999998432         2223333 336778888888766433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.75  E-value=2.6e-08  Score=118.29  Aligned_cols=185  Identities=14%  Similarity=0.229  Sum_probs=144.5

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      +|..-+-++|+.||.|++|....++.+..++......|+.+.|+.+|+ -+..+..||.+.+|.+...  .....+.|..
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~pk--~~~s~qchnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASPK--PYTSWQCHNK 2293 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCCc--ceeccccCCc
Confidence            456677899999999999999988888887765557888899999998 6888899999999998733  3667788998


Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceee--EeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs---~DGtV~IWDlrt~~~v~--~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      ...++.|-.  ..+++++   .++.+.+||..-.....  ...|.+..+++++.|.-+.|++|+.+|.|+|||++..+ .
T Consensus      2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-l 2370 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-L 2370 (2439)
T ss_pred             cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-H
Confidence            899999984  6677765   56789999976432222  24799999999999999999999999999999999863 2


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ...+.       .    ++             .+.+++.++..|.++||++..+.-..++
T Consensus      2371 ~h~~~-------~----~~-------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2371 RHTFQ-------A----LD-------------TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             HHHhh-------h----hh-------------hhheeeccCcccceEEEEccccchhhcC
Confidence            22222       1    22             2345677777999999999877544443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.75  E-value=6.6e-06  Score=87.13  Aligned_cols=198  Identities=14%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             CccCCCCEEEEEEC----CCcEEEEECCCC--ce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNCKDEHLASISL----SGDLILHNLASG--AK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSpdG~~LasGs~----DG~V~VWDl~tg--~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +++|++++|++...    +|.|..|++...  ++  +..... .......++++++++.++++--.+|.|.+|++.....
T Consensus        43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~  121 (345)
T PF10282_consen   43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS  121 (345)
T ss_dssp             EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred             EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence            36789999998876    478999988653  32  333332 2233345899999995455445699999999976432


Q ss_pred             eeEE--ec-----------cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--eee----EeecCCCeEEEEEec
Q 008356           73 KVSW--LK-----------QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRR--PSS----CITYEAPFSSLAFID  132 (568)
Q Consensus        73 ~v~~--l~-----------~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~--~v~----~~~h~~~ItsLafsP  132 (568)
                      ....  ..           .......++.|+|+++++++.. ....|++|++....  ...    .+......+.++|+|
T Consensus       122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP  201 (345)
T ss_dssp             EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred             cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence            2111  11           1234578999999999888775 34479999997654  322    224567789999999


Q ss_pred             CCCEEEEEE-cCCeEEEEECCCCCCceEEEe---ec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          133 DDWILTAGT-SNGRVVFYDIRGKPQPLTVLR---AC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       133 dg~~LasGs-~DG~V~VWDlrt~~~~v~~l~---~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      +++++++.. .++.|.+|++......++.+.   ..    ........|+++|+|++|...           ....+.|.
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-----------nr~~~sI~  270 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-----------NRGSNSIS  270 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-----------ECTTTEEE
T ss_pred             CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-----------eccCCEEE
Confidence            999887766 478899999983222222222   11    112257889999998776554           33466777


Q ss_pred             cCCCCC
Q 008356          205 MPDPLP  210 (568)
Q Consensus       205 VWDlr~  210 (568)
                      +|++.+
T Consensus       271 vf~~d~  276 (345)
T PF10282_consen  271 VFDLDP  276 (345)
T ss_dssp             EEEECT
T ss_pred             EEEEec
Confidence            777643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.73  E-value=3e-07  Score=93.97  Aligned_cols=146  Identities=13%  Similarity=0.191  Sum_probs=100.6

Q ss_pred             ccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |..|..+++ ....++.|.+|++...+-.+.+... ...+..++|+|+|+++|.+..-|-.|.||.+.+.+...  +.-.
T Consensus        56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~p  132 (447)
T KOG4497|consen   56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHP  132 (447)
T ss_pred             eeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccc
Confidence            445555554 4567899999999998888888864 44567799999999999999999999999998877322  3333


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEECCCCceeeEeecCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDK------------------------------------KLYTYDPGSRRPSSCITYEAP  124 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DG------------------------------------tV~IWDlrt~~~v~~~~h~~~  124 (568)
                      ...+..++|+|||++.+.++...                                    .+.+||---.-.+......-.
T Consensus       133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG  212 (447)
T KOG4497|consen  133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG  212 (447)
T ss_pred             ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence            44568899999999887665432                                    233333221111111222345


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356          125 FSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus       125 ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      +..++|+|.+++|++|+.|+.++|.+
T Consensus       213 ~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  213 LKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             eeEEEeccccceEEeeccchhhhhhc
Confidence            66777777777777777777777654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.72  E-value=3.5e-07  Score=92.35  Aligned_cols=167  Identities=16%  Similarity=0.106  Sum_probs=122.0

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCC-----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCC
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHS   81 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h-----~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~~~v~~l~~H~   81 (568)
                      .|+-+..+|.|.++..........+.+-.     ....-++.|++.+. -++++..+|.+.+-+.... -..++.++.|.
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He  165 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHE  165 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccc
Confidence            35556667888888764433333333211     11134578888887 5888888999885554332 23356789999


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeE--eecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCC
Q 008356           82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC--ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        82 ~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~--~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      -++.-..|+. +.+++.+|+.|+.+..||+|..+ .+..  ..|...|.+|.-+| .+.++++|+.|-.|++||.|+..+
T Consensus       166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            9999999987 67899999999999999999433 2222  24788899998887 578999999999999999998777


Q ss_pred             ceEEEeecCCCCCeeEEEEccC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspd  178 (568)
                      |+..-.   -.+.|..+.++|.
T Consensus       246 Pl~~~~---v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  246 PLFKAK---VGGGVWRIKHHPE  264 (339)
T ss_pred             ccccCc---cccceEEEEecch
Confidence            665433   4588999999995

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.2e-06  Score=94.93  Aligned_cols=179  Identities=17%  Similarity=0.238  Sum_probs=120.7

Q ss_pred             ECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCCeEEEEEeC--C---------CeEEEEECCCCCceeEE
Q 008356           13 SLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGD--D---------GTLHLWDTTGRSPKVSW   76 (568)
Q Consensus        13 s~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--D---------GtV~VWDl~t~~~~v~~   76 (568)
                      |.-+.|+||.......     .+.|.  ..+.|. +.|++-|..+|+.++.  |         .+++++++++..  ...
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V  265 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSV  265 (566)
T ss_pred             CCCcEEEEeccccccccchhhhcccc--ccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEE
Confidence            3345688887642111     11121  234555 7999988877766543  2         358888888544  233


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc---CCeEEEEEC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASV--GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDI  151 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSg--s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDl  151 (568)
                      --...++|.++.|+++++.++++  -.-.++.|||++. .++..+ .+++=+++-|+|.|++|+.++.   .|.|-|||+
T Consensus       266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            33457899999999999776655  4566899999874 444444 4567788999999999998776   478999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .+.++ +..+.    ...-+-+.|+|||++++++.....-.+      |+.++||+..
T Consensus       344 ~n~K~-i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrv------dNg~Kiwhyt  390 (566)
T KOG2315|consen  344 PNRKL-IAKFK----AANTTVFEWSPDGEYFLTATTAPRLRV------DNGIKIWHYT  390 (566)
T ss_pred             cchhh-ccccc----cCCceEEEEcCCCcEEEEEeccccEEe------cCCeEEEEec
Confidence            98643 33332    133456799999999998844322222      8899999863

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1e-05  Score=83.96  Aligned_cols=185  Identities=11%  Similarity=0.149  Sum_probs=128.3

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCC--CceeEE--eeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCc
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLAS--GAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~t--g~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~   72 (568)
                      +|++++++|.++..+   |.|..|.++.  |++...  ... ....-.-++++++++ +++++. .-|.|.++-++....
T Consensus        46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~  123 (346)
T COG2706          46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGS  123 (346)
T ss_pred             EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCc
Confidence            478999999988654   7788887764  553221  111 122224589999998 555555 568999999965321


Q ss_pred             e--eEEeccCCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceee----EeecCCCeEEEEEecCCC
Q 008356           73 K--VSWLKQHSAP----------TAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSS----CITYEAPFSSLAFIDDDW  135 (568)
Q Consensus        73 ~--v~~l~~H~~~----------VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~----~~~h~~~ItsLafsPdg~  135 (568)
                      +  ......|.+.          +.+..+.|++++|+++.. -.+|.+|++..++...    .+......+.|.|+|+++
T Consensus       124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k  203 (346)
T COG2706         124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK  203 (346)
T ss_pred             cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence            1  2233445555          889999999999998863 3369999999776432    225667789999999999


Q ss_pred             EEEEEEc-CCeEEEEECCCCCCceEEEee-------cCCCCCeeEEEEccCCCeEEEecc
Q 008356          136 ILTAGTS-NGRVVFYDIRGKPQPLTVLRA-------CSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       136 ~LasGs~-DG~V~VWDlrt~~~~v~~l~~-------~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      +..+.++ +++|.+|..+.....+..++.       +....+...|..+++|++|..+..
T Consensus       204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence            9988775 899999999875333333332       234456788999999999887733

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.67  E-value=3.2e-06  Score=90.02  Aligned_cols=170  Identities=14%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEeccCCCC
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQHSAP   83 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~~H~~~   83 (568)
                      +|++++..+ .|...|++...+-   .++..+...|+-..+.-+++ -++.|..|| .+-|||.++.+  +..+...-+.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~---~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~  403 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGY---SIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGN  403 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCe---eEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEEeeCCccc
Confidence            678888886 4678888765443   33334666688778877777 688899999 89999999987  6667778888


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCCCce
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----RVVFYDIRGKPQPL  158 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG----~V~VWDlrt~~~~v  158 (568)
                      |.++..+++|++++.+.....|.++|+.+++....- ...+-|+.+.|+|+++++|-+--+|    .|++||+.+.+ ..
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy  482 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IY  482 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EE
Confidence            999999999999999999999999999999865443 4667899999999999999877665    59999999873 22


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .+.   ...+.=.+-+|.|++++|..-
T Consensus       483 ~vT---T~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         483 DVT---TPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             Eec---CCcccccCcccCCCCcEEEEE
Confidence            222   233334567899999988654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.65  E-value=6.4e-08  Score=115.04  Aligned_cols=178  Identities=15%  Similarity=0.219  Sum_probs=127.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---~DGtV~VWDl~t~~~~v~~l   77 (568)
                      .|+.+|+.+..+..||.+.+|... .+.....+. |....+++.|..  . ++++++   +++.+.+||..-.......-
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee
Confidence            378999999999999999999975 666666676 566678888876  2 567665   57889999974322112223


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      ..|.+.++++++.|...+|++|+.+|.|++||++..+..+.++.        ++ ...++++|+..|.++||++.... .
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~-l 2402 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG-L 2402 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccc-h
Confidence            78999999999999999999999999999999998887766643        44 56799999999999999998763 2


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg  201 (568)
                      +..+.   +...-.++ |-..|..+-.+    ....|++++.|+
T Consensus      2403 l~~~p---~e~ak~gf-Fr~~g~Q~~v~----~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2403 LHTFP---SEHAKQGF-FRNIGMQINVG----QCNRIFSCGADG 2438 (2439)
T ss_pred             hhcCc---hhhcccch-hhhcCceeeec----cCceEEEecCCC
Confidence            22222   11122233 44444444333    344566666565

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.61  E-value=8e-06  Score=98.30  Aligned_cols=194  Identities=13%  Similarity=0.062  Sum_probs=124.4

Q ss_pred             ccCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356            2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTLHL   64 (568)
Q Consensus         2 fSpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h----------------~~~Vs~Lafspdg~~lLaTgs~DGtV~V   64 (568)
                      |+++++.|+++.. ++.|+++|+.++. +..+.+..                -..-..++|++++..++++...++.|++
T Consensus       631 vd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v  709 (1057)
T PLN02919        631 YNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWE  709 (1057)
T ss_pred             EeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEE
Confidence            5567777766654 4678889986654 33332100                0122568999965557788888999999


Q ss_pred             EECCCCCceeEEecc---------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEee--------
Q 008356           65 WDTTGRSPKVSWLKQ---------------HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT--------  120 (568)
Q Consensus        65 WDl~t~~~~v~~l~~---------------H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~~--------  120 (568)
                      ||..++..  ..+.+               .-...+.|+|+|++++| ++-..++.|++||+.++.......        
T Consensus       710 ~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        710 YNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            99876542  21111               11245679999998855 555677899999998765321110        


Q ss_pred             ------c--------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC------------CCCCeeEEE
Q 008356          121 ------Y--------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS------------SSEAVSSLC  174 (568)
Q Consensus       121 ------h--------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~------------h~~~VtsLa  174 (568)
                            .        -.....++++++|+++++-..+++|++||..+.. . ..+...+            +-.....++
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GIa  865 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGLA  865 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEEE
Confidence                  0        1124688999999988888899999999998752 1 2222111            112455677


Q ss_pred             EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++++|+            ++++...++.|++||+....
T Consensus       866 vd~dG~------------lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        866 LGENGR------------LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EeCCCC------------EEEEECCCCEEEEEECCCCc
Confidence            776543            45555668899999986643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.60  E-value=3.8e-06  Score=91.48  Aligned_cols=145  Identities=13%  Similarity=0.182  Sum_probs=122.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEee-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~-~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~   83 (568)
                      +-..|+.|...|.|.+|++..++....+. +.|.+.|.++.++.+-. .|.+++.|+.+..|+..... .++.+......
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~  146 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV-IIRIWKEQKPL  146 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce-eeeeeccCCCc
Confidence            34567888889999999999999887776 67889999998888776 79999999999999998876 46777788888


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecC-----CCEEEEE-EcCCeEEEEECCC
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-----DWILTAG-TSNGRVVFYDIRG  153 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPd-----g~~LasG-s~DG~V~VWDlrt  153 (568)
                      +..++.+||+..+++++  ++|++||+++++.+..| +|.++|+++.|--+     |.+++++ ..+..+.+|-++.
T Consensus       147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99999999999999886  68999999999999988 79999999999876     6666654 4456688887765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.60  E-value=1.4e-07  Score=104.26  Aligned_cols=202  Identities=13%  Similarity=0.154  Sum_probs=145.1

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKD-EHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |++.. ..|++++.|-.|..||+.... .+.....-+... ..|+|+-...+++ +.+..+.|++||.+.+..++..+++
T Consensus       122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a-sqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~  199 (1081)
T KOG0309|consen  122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA-SQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKG  199 (1081)
T ss_pred             cCCCCCcceeeccccccceeeeccCCCcceeeeecccccC-ceeeecccCcchh-hhccCCceEEEeccCCCcceEEecc
Confidence            45554 578999999999999998765 344444434333 4589998777544 4466778999999988878899999


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC--ceeeEeecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECC--
Q 008356           80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR--RPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIR--  152 (568)
Q Consensus        80 H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~--~~v~~~~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlr--  152 (568)
                      |...|+.++|+. ....+.+++.|++|+.||....  +..+.+....+|..-++-|-  |.++.---.+..|.+++.+  
T Consensus       200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~  279 (1081)
T KOG0309|consen  200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS  279 (1081)
T ss_pred             cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence            999999999987 5667899999999999998753  44555667778888888773  3333322223345555444  


Q ss_pred             -------CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          153 -------GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       153 -------t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                             ...+++..+.  +|...|..+.|...+....-  ....+..|++.+.|..+++|-+.
T Consensus       280 d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d--~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  280 DLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGD--YDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             hhhhccccCCcceeeec--CcchHHHHHhhhhcccccCC--CCccceeEEEeecCCceEeeecc
Confidence                   3445666665  89999998888765432111  13355789999999999999875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.55  E-value=1e-06  Score=92.05  Aligned_cols=151  Identities=14%  Similarity=0.168  Sum_probs=107.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEE--EEeCCCeEEEEECCCCCceeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLV--TAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLa--Tgs~DGtV~VWDl~t~~~~v~   75 (568)
                      +++++++||++..+...++++.....    ++.....  ...-+.+.|..+....++  .+++...+.+|......  ..
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~--~~  145 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR--CE  145 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccceEEEEeecCCceeeeeecccccC--cc
Confidence            57888999999888887777765333    2222221  222344555555542222  23344455555555433  45


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE--eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~--~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .+.+|-..+++|+|+||+++|+++..|..|++-.......+..  ++|..-|..++.-++ +.|++++.|++|++||+++
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence            6788999999999999999999999999999987766555443  379999999999865 5689999999999999999


Q ss_pred             CCCc
Q 008356          154 KPQP  157 (568)
Q Consensus       154 ~~~~  157 (568)
                      ++++
T Consensus       225 gk~L  228 (390)
T KOG3914|consen  225 GKLL  228 (390)
T ss_pred             CCcc
Confidence            8654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=2.8e-07  Score=98.17  Aligned_cols=167  Identities=14%  Similarity=0.171  Sum_probs=132.1

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 008356           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGS  112 (568)
Q Consensus        35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt  112 (568)
                      .|.+.|..|.|+..|. +|++|++|..|.+||......+.....+|...|....|-|  +...|++++.||.|++=.+..
T Consensus       140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            4778899999999998 8999999999999999888877888889999999999998  678899999999999887654


Q ss_pred             -Ccee---eEeecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEE
Q 008356          113 -RRPS---SCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFID  184 (568)
Q Consensus       113 -~~~v---~~~~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~~Las  184 (568)
                       +.+.   ..-.|.++|..++.-|+ .+.|.+++.|+.|.-+|++.........+...+..   ....++.+|...    
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt----  294 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT----  294 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc----
Confidence             3222   23369999999999996 46788999999999999998644333333333433   466777777532    


Q ss_pred             eccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          185 ETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                             ..+..++.|..+++||.|.+..
T Consensus       295 -------~~faVgG~dqf~RvYD~R~~~~  316 (559)
T KOG1334|consen  295 -------NEFAVGGSDQFARVYDQRRIDK  316 (559)
T ss_pred             -------cccccCChhhhhhhhcccchhh
Confidence                   3455566799999999987664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.50  E-value=2.8e-06  Score=87.52  Aligned_cols=192  Identities=18%  Similarity=0.196  Sum_probs=140.1

Q ss_pred             CCCCEEEEEECCCcEEEEE-CCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEecc
Q 008356            4 CKDEHLASISLSGDLILHN-LASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQ   79 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWD-l~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~v~~l~~   79 (568)
                      |..+-+++.+.|.+++||- .+.++.-..+.......++++.+.++.. .|++|-++|++.-+.+...-.   ..+....
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~  112 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLA  112 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhh
Confidence            3445678889999999995 4456665555543467789999999887 799999999999998743221   2444567


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------ceeeE
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----------------------------------------RPSSC  118 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-----------------------------------------~~v~~  118 (568)
                      |..+|..+.|+-...++++.+.|..+..--.+.+                                         .++..
T Consensus       113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence            8888999988888888888877765432211111                                         11111


Q ss_pred             e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 008356          119 I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG  197 (568)
Q Consensus       119 ~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~  197 (568)
                      + +|.+.+.+++|.+...+|.+|..|..|.+||+-.....  .+..++|...|..+...+-            -..++++
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~--~~el~gh~~kV~~l~~~~~------------t~~l~S~  258 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT--AYELQGHNDKVQALSYAQH------------TRQLISC  258 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce--eeeeccchhhhhhhhhhhh------------heeeeec
Confidence            2 47788999999999999999999999999999876543  3344488899988876663            3456777


Q ss_pred             cCCCcEEcCCCCC
Q 008356          198 AVGDSILMPDPLP  210 (568)
Q Consensus       198 s~Dg~V~VWDlr~  210 (568)
                      +.|+.|.+||...
T Consensus       259 ~edg~i~~w~mn~  271 (404)
T KOG1409|consen  259 GEDGGIVVWNMNV  271 (404)
T ss_pred             cCCCeEEEEeccc
Confidence            8899999999864

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.49  E-value=1.5e-06  Score=91.02  Aligned_cols=163  Identities=14%  Similarity=0.122  Sum_probs=114.3

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe---EEEEECCCCce
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWLKQHSAPTAGISFSSDDKIIASVGLDKK---LYTYDPGSRRP  115 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--~v~~l~~H~~~VtslafsPdg~~LaSgs~DGt---V~IWDlrt~~~  115 (568)
                      ..+..++.++ +++.+..+....++++.....  .......-...-+++.|..+...+..+...|.   +.+|....+.+
T Consensus        66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            3345566666 888888888877777755442  12222223334455666665566655555554   44555455777


Q ss_pred             eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEE
Q 008356          116 SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALL  195 (568)
Q Consensus       116 v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Ll  195 (568)
                      ..+++|-..+..++|+||+++|+++..|..|+|-...... .+..++ .||..-|..++.-++             ..|+
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~Iesfc-lGH~eFVS~isl~~~-------------~~Ll  209 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFC-LGHKEFVSTISLTDN-------------YLLL  209 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhc-cccHhheeeeeeccC-------------ceee
Confidence            7788999999999999999999999999999997766542 222232 389999999987663             3478


Q ss_pred             EecCCCcEEcCCCCCCCccccccc
Q 008356          196 GGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       196 s~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                      +++.|++|++||++.+........
T Consensus       210 S~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  210 SGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             ecCCCCcEEEEecccCCcccccch
Confidence            888899999999999887765544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.48  E-value=1.4e-06  Score=89.72  Aligned_cols=199  Identities=7%  Similarity=0.084  Sum_probs=130.4

Q ss_pred             CEEEEEECCCcEEEEECCCCc-----------------------------------eeEEeeCCCCCcEEEEEEccCCCe
Q 008356            7 EHLASISLSGDLILHNLASGA-----------------------------------KAAELKDPNEQVLRVLDYSRNSRH   51 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~-----------------------------------~v~~l~~~h~~~Vs~Lafspdg~~   51 (568)
                      .+++....|.+|++|.+....                                   +.+.+...|...|++|.++.|.+ 
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-  177 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-  177 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence            467777889999999875321                                   11233445777788999999887 


Q ss_pred             EEEEEeCCCeEEEEECCCCC--ceeEEeccCC-----CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcee----eEe
Q 008356           52 LLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS----SCI  119 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~-----~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v----~~~  119 (568)
                      .++ ..+|=.|.+|++.-..  -.+.-++.+.     .-|++..|+| ..+.++..+..|+|++.|+|.....    ..+
T Consensus       178 t~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  178 TFL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             eEe-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            344 4678899999985322  1233344443     4589999999 8889999999999999999953321    111


Q ss_pred             e-------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC---CeEE
Q 008356          120 T-------------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK---PVFI  183 (568)
Q Consensus       120 ~-------------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg---~~La  183 (568)
                      .             --..|..+.|+++|+++++-.. -+|+|||+....+|+..+..+.+-..-.|-.+-.|.   ++-+
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence            1             1235889999999999998754 579999998877888877643221110000011110   1111


Q ss_pred             EeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          184 DETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       184 s~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +  +..++.++++|+....++++++..
T Consensus       336 ~--~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  336 S--WSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             E--EcCCcceEecccccceEEEecCCC
Confidence            1  233566777778888889888543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.45  E-value=4.7e-06  Score=94.46  Aligned_cols=189  Identities=17%  Similarity=0.184  Sum_probs=139.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      ++..++.|+....+..+|+.+.+..+.... ....|..++.  +++ ++++|...|+|.+-|.++.+ .++.+..|.+.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCc-EEEeecccceEEeecCCcCc-eeeeeeccccce
Confidence            556788888888899999988776665543 2333555543  455 79999999999999998887 488999999999


Q ss_pred             EEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeEeecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 008356           85 AGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        85 tslafsPdg~~LaSgs~---------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+++..  |+.|++||.         |..|+|||+|..+.+.-+.......-+.|+|. ...+++++..|...+.|..+-
T Consensus       221 SDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  221 SDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc
Confidence            877665  899999985         45689999999877766654444567888885 567888999999999995442


Q ss_pred             CCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          155 PQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       155 ~~~-v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ..+ ..+.........+..+++++++..++.+            ..+|.|.+|--++..
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------------d~~g~v~~wa~~~~P  345 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFG------------DHEGHVNLWADRPQP  345 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEe------------cccCcEeeecCCCCC
Confidence            222 2333322444558899999987776665            458999999755543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.43  E-value=3e-05  Score=82.85  Aligned_cols=191  Identities=11%  Similarity=0.028  Sum_probs=136.8

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeC-CC------CCcEEEEE----Ecc-CCCeEEEEEeCCCeEEEEECCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKD-PN------EQVLRVLD----YSR-NSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-~h------~~~Vs~La----fsp-dg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      |.||+.|+.- ..|.|++||.++.+....--+ +.      ...+.-.+    |+. +|+ +++..+. |++.|.+...+
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEec-CcEEEECCCCC
Confidence            5688887754 568899999876653321111 00      11111111    232 344 7777776 77777776655


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG-tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                      .  . .-.+|...|.-..+.-+++-++.|..|| .|-+||.++++..+....-+.|.+++.+++|++++++.....|.++
T Consensus       352 ~--~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         352 Y--S-IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             e--e-EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            4  2 2345777798888888888899999999 8999999999888777888899999999999999999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      |++++..  +++.. ...+-|+.+.|+|++++++.+.-  .+.+      -..|+++|+..
T Consensus       429 didngnv--~~idk-S~~~lItdf~~~~nsr~iAYafP--~gy~------tq~Iklydm~~  478 (668)
T COG4946         429 DIDNGNV--RLIDK-SEYGLITDFDWHPNSRWIAYAFP--EGYY------TQSIKLYDMDG  478 (668)
T ss_pred             EecCCCe--eEecc-cccceeEEEEEcCCceeEEEecC--ccee------eeeEEEEecCC
Confidence            9999852  33321 34577999999999999998732  2222      46677777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.41  E-value=1.6e-06  Score=89.27  Aligned_cols=102  Identities=18%  Similarity=0.333  Sum_probs=83.4

Q ss_pred             EEEECCCcEEEEECC--CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356           10 ASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (568)
Q Consensus        10 asGs~DG~V~VWDl~--tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl   87 (568)
                      ..|...|.|.+..+.  ....+..+.+ |.+.+.+++|.+..+ +|++|..|..|.+||+-........+.+|...|..+
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            345555666555443  3445666776 777889999999877 899999999999999987776778899999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC
Q 008356           88 SFSSDDKIIASVGLDKKLYTYDPGSR  113 (568)
Q Consensus        88 afsPdg~~LaSgs~DGtV~IWDlrt~  113 (568)
                      ...+.-+.+++++.||.|.+||....
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccce
Confidence            99888899999999999999998653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.40  E-value=0.00014  Score=77.22  Aligned_cols=199  Identities=10%  Similarity=0.081  Sum_probs=126.1

Q ss_pred             ccCCCCEEEEEEC----------CCcEEEEECCCCceeEEeeCCCC------CcEEEEEEccCCCeEEEEEeC-CCeEEE
Q 008356            2 YNCKDEHLASISL----------SGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTAGD-DGTLHL   64 (568)
Q Consensus         2 fSpdG~~LasGs~----------DG~V~VWDl~tg~~v~~l~~~h~------~~Vs~Lafspdg~~lLaTgs~-DGtV~V   64 (568)
                      ++|||+.|+++..          +..|.+||+.+.+.+.++..+.+      ..-..++++++|+.+++.--. +..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            6899998887765          68999999999999988875322      122357899999954444434 789999


Q ss_pred             EECCCCCceeE--------------------Eecc---------------CCCCeEEE---------EEcC-CCCEEEEE
Q 008356           65 WDTTGRSPKVS--------------------WLKQ---------------HSAPTAGI---------SFSS-DDKIIASV   99 (568)
Q Consensus        65 WDl~t~~~~v~--------------------~l~~---------------H~~~Vtsl---------afsP-dg~~LaSg   99 (568)
                      .|+..++....                    +..+               +..+|...         .|.+ ++++++..
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            99876652110                    0000               00011000         2234 67776666


Q ss_pred             eCCCeEEEEECCCC-----ceeeEee--------cCCCeEEEEEecCCCEEEEEEc----------CCeEEEEECCCCCC
Q 008356          100 GLDKKLYTYDPGSR-----RPSSCIT--------YEAPFSSLAFIDDDWILTAGTS----------NGRVVFYDIRGKPQ  156 (568)
Q Consensus       100 s~DGtV~IWDlrt~-----~~v~~~~--------h~~~ItsLafsPdg~~LasGs~----------DG~V~VWDlrt~~~  156 (568)
                      .+ |+|.+.|+...     +....+.        ..+.+.-++++++++.+++...          .+.|.++|..+.+.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            65 99999996543     2233321        1223445999999998888431          24799999988742


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~-~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                       +..+.   -...+..++++|+++ .|+..           ...++.|.++|+.......+
T Consensus       292 -i~~i~---vG~~~~~iavS~Dgkp~lyvt-----------n~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       292 -LRKIE---LGHEIDSINVSQDAKPLLYAL-----------STGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             -EEEEe---CCCceeeEEECCCCCeEEEEe-----------CCCCCcEEEEECcCCeEEee
Confidence             33332   346789999999876 43322           23477788999876654443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.39  E-value=2.3e-05  Score=94.46  Aligned_cols=153  Identities=12%  Similarity=0.193  Sum_probs=107.9

Q ss_pred             ccCC-CCEEEEEECCCcEEEEECCCCceeEEeeCC--------------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356            2 YNCK-DEHLASISLSGDLILHNLASGAKAAELKDP--------------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (568)
Q Consensus         2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v~~l~~~--------------h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD   66 (568)
                      |+|+ +.++++...++.|++||..++... .+.+.              .-.....|+|+++++.++++-..++.|++||
T Consensus       690 ~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D  768 (1057)
T PLN02919        690 FEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD  768 (1057)
T ss_pred             EecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            5664 455566667889999998776532 22110              0112356899999986777777889999999


Q ss_pred             CCCCCceeEE------------ec--------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC----
Q 008356           67 TTGRSPKVSW------------LK--------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE----  122 (568)
Q Consensus        67 l~t~~~~v~~------------l~--------~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~----  122 (568)
                      +.++......            +-        ..-.....++++++++++++-..+++|++||..++.........    
T Consensus       769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~  848 (1057)
T PLN02919        769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF  848 (1057)
T ss_pred             CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC
Confidence            9765421110            00        00112468899999998888899999999999887665443211    


Q ss_pred             ----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356          123 ----------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       123 ----------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                                .....++++++|+++++-+.++.|++||+++..
T Consensus       849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence                      246789999999988888899999999998864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.38  E-value=1.4e-06  Score=96.57  Aligned_cols=198  Identities=16%  Similarity=0.234  Sum_probs=138.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCe-EEEEEeCCCeEEEEECCC--CCceeEEe
Q 008356            2 YNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRH-LLVTAGDDGTLHLWDTTG--RSPKVSWL   77 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~-lLaTgs~DGtV~VWDl~t--~~~~v~~l   77 (568)
                      .+|.|+-+|.++.-| +++.|+.. ...-.-+.....-.|-++.|++.... +-++......-.+|++..  .......+
T Consensus        32 i~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~l  110 (1081)
T KOG0309|consen   32 INPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVL  110 (1081)
T ss_pred             eccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEE
Confidence            467777778777766 55666653 33333333112334566788876421 233334455667899843  23335567


Q ss_pred             ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        78 ~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+|...|+++.|+| ....+++++.|-.|..||++... ++..+ .-...-..++|+.....+++.+..+.|++||++.+
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG  190 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence            88999999999999 66788999999999999999854 44443 34456678999985445555556678999999999


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ..++..++  +|...|+.++|..-           ....+++.+.|++|+.||..+...
T Consensus       191 s~pl~s~K--~~vs~vn~~~fnr~-----------~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  191 STPLCSLK--GHVSSVNSIDFNRF-----------KYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             CcceEEec--ccceeeehHHHhhh-----------hhhhhcccCCCCceeeeccccccc
Confidence            88888887  68888999988763           344677888899999999876554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=0.00021  Score=74.39  Aligned_cols=184  Identities=13%  Similarity=0.148  Sum_probs=123.3

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCC-Ccee---EEeeCCCCCc----------EEEEEEccCCCeEEEEEe-CCCeEEE
Q 008356            1 MYNCKDEHLASISL-SGDLILHNLAS-GAKA---AELKDPNEQV----------LRVLDYSRNSRHLLVTAG-DDGTLHL   64 (568)
Q Consensus         1 afSpdG~~LasGs~-DG~V~VWDl~t-g~~v---~~l~~~h~~~----------Vs~Lafspdg~~lLaTgs-~DGtV~V   64 (568)
                      +++++|++|+++.. .|.|.++-+.. |...   ..++  |.+.          +....+.|+++ +|++.. .--.|.+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~  171 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFL  171 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEE
Confidence            35678999988865 58999999854 4432   2222  2222          77889999998 455544 3456999


Q ss_pred             EECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC--c--eeeEe-------ecCCCeEEEEE
Q 008356           65 WDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR--R--PSSCI-------TYEAPFSSLAF  130 (568)
Q Consensus        65 WDl~t~~~~--v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~--~--~v~~~-------~h~~~ItsLaf  130 (568)
                      |++..+...  ......-......|.|+|++++..... .+++|-+|.....  +  .++.+       ........|.+
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            999865421  111113345578899999999886655 6899999998773  2  12222       13456788999


Q ss_pred             ecCCCEEEEEEc-CCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEEecc
Q 008356          131 IDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       131 sPdg~~LasGs~-DG~V~VWDlrt~~~~v~~l~~-~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      ++||++|.+... ...|.+|.+......+..+.. ..+....+.+.|++.|++|++...
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            999999998764 346888888765433444332 235555889999998888776643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.33  E-value=1.9e-05  Score=86.13  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=134.5

Q ss_pred             CccCCCCEEEEEE---CC-CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCcee
Q 008356            1 MYNCKDEHLASIS---LS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpdG~~LasGs---~D-G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v   74 (568)
                      +|+|++..++...   .. ..++++++++++....+.  ....-..-+|+|+|+.++++...||.  |+++|+.++.  .
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~  274 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--L  274 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--c
Confidence            4788888765542   22 469999999887655554  22233346899999988899888887  5566666655  3


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-Ce--EEE
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GR--VVF  148 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G~--V~V  148 (568)
                      ..+....+.-..-.|+|||++|+..+..+   .|.++|.+.....+.....+.-..-.|+|||++|+..+.. |.  |.+
T Consensus       275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~  354 (425)
T COG0823         275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDK  354 (425)
T ss_pred             eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence            33444444344677999999998776443   5888888877664444444444488899999999987753 44  777


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      +|+..... +..+   .+......-.|.++++.+...+....+..+.....++.+..
T Consensus       355 ~~~~~~~~-~~~l---t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         355 NDLASGGK-IRIL---TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             eccCCCCc-EEEc---cccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence            77776643 3333   34455566789999999888766666777777777776654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=3.7e-05  Score=83.54  Aligned_cols=150  Identities=13%  Similarity=0.192  Sum_probs=107.7

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE-eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCE
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA-GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI   95 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg-s~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~   95 (568)
                      ++++++++...  +.+.....++|+++.|+++++.+.++- -.=-.+-|||++..-  +.  .-..++=+++-|+|.|++
T Consensus       252 ~Lyll~t~g~s--~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~--df~egpRN~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGES--VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VF--DFPEGPRNTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCce--EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eE--eCCCCCccceEECCCCCE
Confidence            68888876223  334444678999999999998544443 345679999998754  32  334556688999999999


Q ss_pred             EEEEeC---CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCCCceEEEeecCC
Q 008356           96 IASVGL---DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus        96 LaSgs~---DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~------DG~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                      |+.+|-   -|.|-+||+.+.+++..+.. ...+-+.|+|||.+|++++.      |+.++||+..+..--.+.+     
T Consensus       326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f-----  399 (566)
T KOG2315|consen  326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF-----  399 (566)
T ss_pred             EEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh-----
Confidence            998885   46899999999777766533 34567899999999999876      6779999998762111111     


Q ss_pred             CCCeeEEEEccC
Q 008356          167 SEAVSSLCWQRA  178 (568)
Q Consensus       167 ~~~VtsLafspd  178 (568)
                      ......++|.|.
T Consensus       400 ~sEL~qv~W~P~  411 (566)
T KOG2315|consen  400 KSELLQVEWRPF  411 (566)
T ss_pred             hHhHhheeeeec
Confidence            125778899874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.22  E-value=4.9e-05  Score=81.87  Aligned_cols=184  Identities=15%  Similarity=0.137  Sum_probs=124.6

Q ss_pred             EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC----------CCeEEEEECCCCCceeEEeccCC
Q 008356           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----------DGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus        12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~----------DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      .+..+.++||.+..+..+....--.-+.+. +.|.+.|+.+++-.-.          ...++|++++.....+  ...-.
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q-LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~  274 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ-LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLK  274 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccE-EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecccc
Confidence            456678888888766554432211223444 8999999865553321          1458899998766333  33667


Q ss_pred             CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCC
Q 008356           82 APTAGISFSSDDKIIASV--GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQ  156 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSg--s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VWDlrt~~~  156 (568)
                      ++|..++|.|.++.++++  -.+-.+.++|++..  +.....+..=+.+.|+|.++++++++.|   |.|.+||..+...
T Consensus       275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~  352 (561)
T COG5354         275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK  352 (561)
T ss_pred             ccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence            899999999977766554  47888999999976  3344445556678899999999997765   6799999988754


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .+..+.  +  ....-+.|+|+++++.+...+..      --.|..+++||+.-
T Consensus       353 ~~~~~~--~--~n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v~g  396 (561)
T COG5354         353 VAGAFN--G--LNTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEEee--c--CCceEeeccCCceEEEecCCCcc------cccCcceEEEEecC
Confidence            332332  2  22344689999999877633222      12389999999853

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.20  E-value=0.00041  Score=75.68  Aligned_cols=160  Identities=9%  Similarity=0.094  Sum_probs=102.7

Q ss_pred             CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEE-EEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 008356           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD   92 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLa-Tgs~--DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd   92 (568)
                      ..|.+-|.. |...+.+.. .. .+....|+|+++.+++ +...  +..|+++|+.+++  ...+....+.+....|+||
T Consensus       169 ~~l~~~d~d-g~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--~~~lt~~~g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADYT-LTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--KEKIASSQGMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECCC-CCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--EEEEecCCCcEEeeEECCC
Confidence            356666653 443444443 23 5667899999985344 3333  3569999998876  3344445566777889999


Q ss_pred             CCEEEEEe-C--CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCC
Q 008356           93 DKIIASVG-L--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus        93 g~~LaSgs-~--DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G--~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                      ++.|+... .  +..|+++|+.+++......+........|+|||+.|+..+.. +  .|+++|+.++..  +.+...+ 
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g-  320 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHG-  320 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCC-
Confidence            98776543 2  357999999888755444444334556899999988877642 3  588888887632  2222111 


Q ss_pred             CCCeeEEEEccCCCeEEEec
Q 008356          167 SEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s  186 (568)
                       .  ....|+|+|++|+...
T Consensus       321 -~--~~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        321 -K--NNSSVSTYKNYIVYSS  337 (419)
T ss_pred             -C--cCceECCCCCEEEEEE
Confidence             1  1348999999987763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.20  E-value=4.7e-06  Score=83.14  Aligned_cols=75  Identities=25%  Similarity=0.427  Sum_probs=68.8

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS  112 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt  112 (568)
                      ..|.+++-+|..++++++|++||.+-+||.+....+...++.|+.+++.+.|+| ++..|+++++||.+..||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            448889999998899999999999999999988767788899999999999999 889999999999999999764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.20  E-value=0.00011  Score=74.47  Aligned_cols=153  Identities=11%  Similarity=0.113  Sum_probs=103.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC------CCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP------NEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~------h~~~Vs~Lafspdg-----~~lLaTgs~DGtV~VWDl~t   69 (568)
                      +|+||+..||.+...|+|++||+.. ..+..+...      ....|..+.|.+..     ...|++-..+|.++-|-+..
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~  128 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV  128 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence            5899999999999999999999864 333333321      23556677776543     22466667888888887632


Q ss_pred             C--C--ceeE--Eec-cCCCCeEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCcee---------------
Q 008356           70 R--S--PKVS--WLK-QHSAPTAGISFSSDDKIIASVGL----DK-------KLYTYDPGSRRPS---------------  116 (568)
Q Consensus        70 ~--~--~~v~--~l~-~H~~~VtslafsPdg~~LaSgs~----DG-------tV~IWDlrt~~~v---------------  116 (568)
                      +  +  ...+  .+. .+...|+++.|+|..++|+.||.    ++       -+..|.+-++.+.               
T Consensus       129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~  208 (282)
T PF15492_consen  129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS  208 (282)
T ss_pred             ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence            1  1  1111  122 24678999999999888887763    11       2556655322110               


Q ss_pred             ------e-----Ee----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356          117 ------S-----CI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       117 ------~-----~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                            +     .+    .....|..|.++|||..||+.+.+|.|.+|++-.-
T Consensus       209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence                  0     01    13566889999999999999999999999999764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.20  E-value=4.5e-05  Score=76.56  Aligned_cols=155  Identities=10%  Similarity=0.013  Sum_probs=103.9

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEE
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLA  129 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslafs-Pdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLa  129 (568)
                      +|+.|+.-|...+|...+++........|...|+-+.=. -....+..++.|.++++.++..+....... ..-.+.+++
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~  165 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH  165 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence            789999999999999987775555555555543322111 123456778889999988887554332221 112388999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +++|++++++.+....|.+|.+......+..+........-.+..|+.            ....++.+..|+.+.|||+|
T Consensus       166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~------------~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE------------NDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc------------CcceEEEEecCCcEEEEEec
Confidence            999999999999999999999987543222222112233334555655            34455666779999999999


Q ss_pred             CCCcccccc
Q 008356          210 PSVTTSSVS  218 (568)
Q Consensus       210 ~~~~~~s~~  218 (568)
                      ....+....
T Consensus       234 ~~~tpm~~~  242 (344)
T KOG4532|consen  234 NMATPMAEI  242 (344)
T ss_pred             ccccchhhh
Confidence            988766543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.18  E-value=2.9e-06  Score=84.62  Aligned_cols=144  Identities=17%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceee-EeecCCC
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASVG-----LDKKLYTYDPGSRRPSS-CITYEAP  124 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~~VtslafsPdg~~LaSgs-----~DGtV~IWDlrt~~~v~-~~~h~~~  124 (568)
                      -++++..||.+.+++.+......+.+.. |.+ -.+.++...++.|.+++     .-+..+.|+++..+.+. .......
T Consensus       103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~  181 (319)
T KOG4714|consen  103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA  181 (319)
T ss_pred             ceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence            5899999999999998652211111111 111 12223333445444433     12345666665433221 1123345


Q ss_pred             eEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcE
Q 008356          125 FSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI  203 (568)
Q Consensus       125 ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V  203 (568)
                      +.+++-+|. .+.+++|+.||.|.+||.|+...+...+.  .|..++..+-|+|.           +...|++++.||.+
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~--ahk~~i~eV~FHpk-----------~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK--AHKAEIWEVHFHPK-----------NPEHLFTCSEDGSL  248 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH--HhhhhhhheeccCC-----------CchheeEecCCCcE
Confidence            999999994 56788899999999999999877777776  79999999999995           45567888889999


Q ss_pred             EcCCCC
Q 008356          204 LMPDPL  209 (568)
Q Consensus       204 ~VWDlr  209 (568)
                      ..||-.
T Consensus       249 w~wdas  254 (319)
T KOG4714|consen  249 WHWDAS  254 (319)
T ss_pred             EEEcCC
Confidence            999965

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=4e-06  Score=86.43  Aligned_cols=161  Identities=12%  Similarity=0.114  Sum_probs=115.2

Q ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----ceeeE
Q 008356           44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----RPSSC  118 (568)
Q Consensus        44 afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-----~~v~~  118 (568)
                      +|+-+-..+-++.+.+-.|-+-|+.++-.  + .......|.++.|...++++..|+.+|.|..+|+|.+     .+...
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~--q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ--Q-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc--c-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            56544322335566677788888877652  2 2235677999999988999999999999999999874     46677


Q ss_pred             eecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 008356          119 ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG  197 (568)
Q Consensus       119 ~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~  197 (568)
                      +-|+..|+++..-. ++++|++.+-+|+|++||+|.-++...+....+|-..-.-+-++-          ...+..++++
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v----------~~eeg~I~s~  364 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV----------KEEEGSIFSV  364 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc----------ccccceEEEc
Confidence            78999999998877 788999999999999999997654333333335544333332222          2245566777


Q ss_pred             cCCCcEEcCCCCCCCccccc
Q 008356          198 AVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       198 s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      +.|...++|.++......+.
T Consensus       365 GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             cCeeEEEEEecccCceeecc
Confidence            88999999999865544443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.18  E-value=0.00063  Score=68.14  Aligned_cols=176  Identities=13%  Similarity=0.140  Sum_probs=109.7

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCcee-EEec
Q 008356            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLK   78 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t~~~~v-~~l~   78 (568)
                      |.+ ++.++++--..+.|+.|+..+++.. .+..  .. ...+++. +++  .|+.+..++ +.++|..+++... ....
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~--~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL--PG-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEE-EEES--SS-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec--CC-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            666 4555555556889999998776543 3332  12 4557777 554  355555544 4555987765221 1111


Q ss_pred             --c-CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEE-EEcCCeE
Q 008356           79 --Q-HSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTSNGRV  146 (568)
Q Consensus        79 --~-H~~~VtslafsPdg~~LaSgs~D--------GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~Las-Gs~DG~V  146 (568)
                        . .....+++++.++|++.++....        |.|..++.. ++.......-...+.|+|+|+++.|++ -+..+.|
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i  158 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI  158 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccccee
Confidence              1 34568999999999977776544        568888887 665555555667889999999997765 5567889


Q ss_pred             EEEECCCCCCce---EEEeec-CCCCCeeEEEEccCCCeEEEe
Q 008356          147 VFYDIRGKPQPL---TVLRAC-SSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       147 ~VWDlrt~~~~v---~~l~~~-~h~~~VtsLafspdg~~Las~  185 (568)
                      ..|++......+   ..+... ...+..-.++++.+|++.++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~  201 (246)
T PF08450_consen  159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD  201 (246)
T ss_dssp             EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred             EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence            999997543311   222211 222347789998877665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.16  E-value=1.5e-05  Score=81.27  Aligned_cols=197  Identities=14%  Similarity=0.202  Sum_probs=129.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEeeCCC-----------CCcEEEEEEccCC-CeEEEEEeCCCeEEE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNS-RHLLVTAGDDGTLHL   64 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h-----------~~~Vs~Lafspdg-~~lLaTgs~DGtV~V   64 (568)
                      |...|.+|++|...|.|.+|.-+...     ...+++.|.           .+.|..+.|..++ +.-++..+.|.+|++
T Consensus        34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl  113 (460)
T COG5170          34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL  113 (460)
T ss_pred             eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence            44568899999999999999865332     122344422           2357778887654 445777789999999


Q ss_pred             EECCCCCce------------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 008356           65 WDTTGRSPK------------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLD  102 (568)
Q Consensus        65 WDl~t~~~~------------------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~D  102 (568)
                      |.+.....+                                          ...-..|..-|+++.|+.|...++++. |
T Consensus       114 WKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-d  192 (460)
T COG5170         114 WKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD-D  192 (460)
T ss_pred             eeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc-c
Confidence            987443100                                          001235777789999998888777654 6


Q ss_pred             CeEEEEECCCCce----eeEeec-----CCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCc---eEEE----eec-
Q 008356          103 KKLYTYDPGSRRP----SSCITY-----EAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQP---LTVL----RAC-  164 (568)
Q Consensus       103 GtV~IWDlrt~~~----v~~~~h-----~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~---v~~l----~~~-  164 (568)
                      =.|.+|++.-...    +.+.+|     ...|++..|+|. .+.+...+..|.|++-|+|....+   .+.+    ... 
T Consensus       193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~  272 (460)
T COG5170         193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD  272 (460)
T ss_pred             eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence            6799999875322    222223     235889999995 466777788899999999943111   0111    000 


Q ss_pred             -----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          165 -----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       165 -----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                           +-...|..+.|+++|+||++-             .--+|++||++...
T Consensus       273 ~~ff~eivsSISD~kFs~ngryIlsR-------------dyltvkiwDvnm~k  312 (460)
T COG5170         273 VDFFEEIVSSISDFKFSDNGRYILSR-------------DYLTVKIWDVNMAK  312 (460)
T ss_pred             chhHHHHhhhhcceEEcCCCcEEEEe-------------ccceEEEEeccccc
Confidence                 123467889999998887765             14679999998644

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.15  E-value=0.00086  Score=68.13  Aligned_cols=202  Identities=13%  Similarity=0.146  Sum_probs=125.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCC--ceeEE--eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            2 YNCKDEHLASISLSGDLILHNLASG--AKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg--~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      .+.||++||+. .|..|.|-..++.  ..+..  +.......-+-++|+||+. +||.+...|+|++||+.+..  +..+
T Consensus         5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~--lf~I   80 (282)
T PF15492_consen    5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSE--LFVI   80 (282)
T ss_pred             ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccce--eEEc
Confidence            35678877765 5677777765432  12222  2222344567799999998 89999999999999998754  2222


Q ss_pred             cc-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCC-----ceeeEe----ecCCCeEEEEEecCCC
Q 008356           78 KQ-------HSAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSR-----RPSSCI----TYEAPFSSLAFIDDDW  135 (568)
Q Consensus        78 ~~-------H~~~VtslafsPd------g~~LaSgs~DGtV~IWDlrt~-----~~v~~~----~h~~~ItsLafsPdg~  135 (568)
                      ..       -...|..+.|...      ...|++...+|.++-|-+..+     +....+    .+...|.++.++|.-+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            21       2345777777652      235777788888887765321     222333    2577899999999988


Q ss_pred             EEEEEEcC-C----------eEEEEECCCCCCceEEEee--------------------------cCCCCCeeEEEEccC
Q 008356          136 ILTAGTSN-G----------RVVFYDIRGKPQPLTVLRA--------------------------CSSSEAVSSLCWQRA  178 (568)
Q Consensus       136 ~LasGs~D-G----------~V~VWDlrt~~~~v~~l~~--------------------------~~h~~~VtsLafspd  178 (568)
                      +|++|+.. .          -+..|.+-....-.+....                          ......|..|..+||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            88887641 1          2566755432211110000                          012345566666665


Q ss_pred             CCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          179 KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       179 g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                      |            ..|++...+|.|.+|++-.........+
T Consensus       241 g------------~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  241 G------------SLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             C------------CEEEEEEcCCeEEEEecCcchhhcccch
Confidence            4            4555557799999999987776666554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.12  E-value=7.4e-06  Score=84.49  Aligned_cols=140  Identities=13%  Similarity=0.235  Sum_probs=102.9

Q ss_pred             EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCeE
Q 008356           10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPTA   85 (568)
Q Consensus        10 asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~----~~~v~~l~~H~~~Vt   85 (568)
                      ++.+.+-.|.+-|+++|-.. .|.  ...-|.++.|...++ +++.|+.+|.|..+|++..    ....+. .-|...|+
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVT  302 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchh
Confidence            44555667888888777532 333  345567788887776 9999999999999999754    222333 34888999


Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCCceee-EeecCCCeEEEE-----EecCCCEEEEEEcCCeEEEEECCCC
Q 008356           86 GISFSS-DDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLA-----FIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        86 slafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~-~~~h~~~ItsLa-----fsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ++.... ++.+|++.+.+|+|++||+|--++.. +...++-++..+     .++....+++++.|...+||.++.+
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            999887 88999999999999999999766522 223344444333     3445678888999999999999987

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00022  Score=81.07  Aligned_cols=176  Identities=16%  Similarity=0.261  Sum_probs=121.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCC---C-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGR---S-   71 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~---~-   71 (568)
                      +|++.+..++.|..+|.|.+++- .-+.+..++.+....|.. -|.-+++++|++.++|+     .|+|||++..   . 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~-L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQF-LYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhH-hhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            36788899999999999988873 444557777654454553 45555555788877765     4999999432   2 


Q ss_pred             cee---EEecc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCc---eeeEeecCCCeEEEEEecCCCEEE
Q 008356           72 PKV---SWLKQ-----HSAPTAGISFSSDDKIIASVGLDKKLYTYD--PGSRR---PSSCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        72 ~~v---~~l~~-----H~~~VtslafsPdg~~LaSgs~DGtV~IWD--lrt~~---~v~~~~h~~~ItsLafsPdg~~La  138 (568)
                      +..   +.+..     ...++.+++.+.+-+.+|+|-.+|.|.++.  +-..+   .......+.+|+.+++..++.-++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            211   12222     346788999999999999999999999884  22111   112224678999999999988755


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 008356          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP  180 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~  180 (568)
                      .+.....|.+|.+.+......++.  .|...+.|..+++...
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~  227 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTY  227 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec--cCCccceeeecCCCCc
Confidence            555557899999996652233344  5778899999888655

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=1.1e-05  Score=87.14  Aligned_cols=174  Identities=20%  Similarity=0.256  Sum_probs=115.0

Q ss_pred             eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 008356           29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLD  102 (568)
Q Consensus        29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~D  102 (568)
                      ++.+.+ |.+.|+.++-..+.+ -+++++.|.+|++|.++...      .-..+...|..+|.++.|..+-++++++  |
T Consensus       728 L~nf~G-H~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  728 LCNFTG-HQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             eecccC-cHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            344555 566677666555544 69999999999999985321      1134567899999999999888887754  7


Q ss_pred             CeEEEEECCCCceeeEe---ecCCCeEEEEEec--CCCEEEEE-EcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEE
Q 008356          103 KKLYTYDPGSRRPSSCI---TYEAPFSSLAFID--DDWILTAG-TSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLC  174 (568)
Q Consensus       103 GtV~IWDlrt~~~v~~~---~h~~~ItsLafsP--dg~~LasG-s~DG~V~VWDlrt~~~--~v~~l~~~~h~~~VtsLa  174 (568)
                      +.|.+||.--++++...   ...+.+..+..-+  +..++.+| +...+|+++|.|...-  .+++....+..+.+++++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            88999998777766533   2233333344334  34455555 6788999999997542  223333345557799999


Q ss_pred             EccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      ..+.|++++.+ -+++...++-.-....|.-|.
T Consensus       884 Va~~GN~lAa~-LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  884 VADKGNKLAAA-LSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             eccCcchhhHH-hcCCcEEEEecCCCceeccCC
Confidence            99999998877 233344444444344455564

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=0.00012  Score=79.61  Aligned_cols=197  Identities=10%  Similarity=0.163  Sum_probs=117.5

Q ss_pred             CccCCCCEEEEEEC-----------CCcEEEEECCCCceeEEeeCC--CCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356            1 MYNCKDEHLASISL-----------SGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT   67 (568)
Q Consensus         1 afSpdG~~LasGs~-----------DG~V~VWDl~tg~~v~~l~~~--h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl   67 (568)
                      .|||+.+||++-+.           ...+.|||+.+|...+.+...  ......-+.|+.|++ +++.-.. ..|.||+.
T Consensus       256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEt  333 (698)
T KOG2314|consen  256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYET  333 (698)
T ss_pred             ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEec
Confidence            38999999998432           247999999999988887752  233344579999998 5665444 56888886


Q ss_pred             CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC----------------------------------------------
Q 008356           68 TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL----------------------------------------------  101 (568)
Q Consensus        68 ~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~----------------------------------------------  101 (568)
                      ..-.. +..-.-....|....|+|.+++|+.-..                                              
T Consensus       334 psf~l-ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  334 PSFML-LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             Cceee-ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence            44221 1111112233555555555555442210                                              


Q ss_pred             -----------CCeEEEEECCCCc-eeeEeecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCC
Q 008356          102 -----------DKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus       102 -----------DGtV~IWDlrt~~-~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                                 -..+-|+.++... ++..+.....|...+|-|.|+.+++-+.   ..+|.+|.+++.......+... .
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-d  491 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-D  491 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-c
Confidence                       0012222222221 2222344566788899999988877553   3569999988432222222221 2


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ....+.+.|+|.|++++.+.       +++  ..+.+.++|...
T Consensus       492 k~~~N~vfwsPkG~fvvva~-------l~s--~~g~l~F~D~~~  526 (698)
T KOG2314|consen  492 KKFANTVFWSPKGRFVVVAA-------LVS--RRGDLEFYDTDY  526 (698)
T ss_pred             ccccceEEEcCCCcEEEEEE-------ecc--cccceEEEecch
Confidence            24567899999999998872       332  578888888753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.08  E-value=0.0013  Score=65.97  Aligned_cols=162  Identities=17%  Similarity=0.179  Sum_probs=106.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeC---C-CCCcEEEEEEccCCCeEEEEEeCC--------CeEEEEECCCCCce
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKD---P-NEQVLRVLDYSRNSRHLLVTAGDD--------GTLHLWDTTGRSPK   73 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~---~-h~~~Vs~Lafspdg~~lLaTgs~D--------GtV~VWDl~t~~~~   73 (568)
                      +..|+++..+ .+.++|+.+++....+..   . .....+++++.++|+ +.++....        |.|..++.. ++  
T Consensus        51 ~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--  125 (246)
T PF08450_consen   51 DGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--  125 (246)
T ss_dssp             TSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--
T ss_pred             CCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--
Confidence            3555656554 456669888865433332   1 345678999999998 66665543        557777766 33  


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCce----eeEe-e--c-CCCeEEEEEecCCCEEEEEEcCC
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRP----SSCI-T--Y-EAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~----v~~~-~--h-~~~ItsLafsPdg~~LasGs~DG  144 (568)
                      +..+...-...+.|+|+|+++.|+ +-+..+.|..||+.....    ...+ .  . .+....+++..+|++.++....+
T Consensus       126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~  205 (246)
T PF08450_consen  126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG  205 (246)
T ss_dssp             EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred             EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence            334444456689999999998775 556788899999864221    1222 1  2 22478899999999988888899


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 008356          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ  176 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafs  176 (568)
                      .|.++|.+..  .+..+...  ...+++++|-
T Consensus       206 ~I~~~~p~G~--~~~~i~~p--~~~~t~~~fg  233 (246)
T PF08450_consen  206 RIVVFDPDGK--LLREIELP--VPRPTNCAFG  233 (246)
T ss_dssp             EEEEEETTSC--EEEEEE-S--SSSEEEEEEE
T ss_pred             EEEEECCCcc--EEEEEcCC--CCCEEEEEEE
Confidence            9999999843  44555532  3478999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=1.8e-06  Score=97.27  Aligned_cols=201  Identities=15%  Similarity=0.165  Sum_probs=134.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+-+.++|++|...|.|++|++.+|.....+.+ |...|+.+.-+.+|..+|.+++... -..+|++.......+.+. 
T Consensus      1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~- 1185 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD- 1185 (1516)
T ss_pred             EeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-
Confidence            4777889999999999999999999998888887 7778888999999985555555554 578999865433343333 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                         .-.++.|+.....-+.|.......+||++++.++..+     .....-++..|+|+..+++   .||  .+||.|..
T Consensus      1186 ---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1186 ---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             ---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH
Confidence               3567888864444445555567899999998877653     2233347889999887765   455  68999986


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCC
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGP  234 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~ss  234 (568)
                      . .+..+..+.   ---.-.|||+|.-++..            +     .|||+|.|....+...     ..+...++.+
T Consensus      1258 ~-aIh~FD~ft---~~~~G~FHP~g~eVIIN------------S-----EIwD~RTF~lLh~VP~-----Ldqc~VtFNs 1311 (1516)
T KOG1832|consen 1258 E-AIHRFDQFT---DYGGGGFHPSGNEVIIN------------S-----EIWDMRTFKLLHSVPS-----LDQCAVTFNS 1311 (1516)
T ss_pred             H-HHhhhhhhe---ecccccccCCCceEEee------------c-----hhhhhHHHHHHhcCcc-----ccceEEEecc
Confidence            3 333333221   11123588976554433            1     4899999986554321     1334445555


Q ss_pred             CCC
Q 008356          235 SAE  237 (568)
Q Consensus       235 sG~  237 (568)
                      .|.
T Consensus      1312 tG~ 1314 (1516)
T KOG1832|consen 1312 TGD 1314 (1516)
T ss_pred             Ccc
Confidence            554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=1.4e-05  Score=88.54  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce---------------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK---------------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW   65 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~---------------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW   65 (568)
                      +||.+..+|++||.||.++|..+.+...               -..+.+ |...|..+.|+.+.+ -|-+...+|.|.||
T Consensus        21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~Q-KLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQ-KLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccc-cccccCCCceEEEE
Confidence            4888899999999999999998764321               123444 788899999998876 68888999999999


Q ss_pred             ECCCCCceeEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC
Q 008356           66 DTTGRSPKVSW-LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus        66 Dl~t~~~~v~~-l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG  144 (568)
                      -+-.+.-.... -.....-|.++.|+.+|..|+.+-.||.|.+=.+...+.-..--.......+.|++|.+.++.+-.+|
T Consensus        99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang  178 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG  178 (1189)
T ss_pred             eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence            98655421111 12345668999999999999999999998887665443221111222345788999999999999999


Q ss_pred             eEEEEECCC
Q 008356          145 RVVFYDIRG  153 (568)
Q Consensus       145 ~V~VWDlrt  153 (568)
                      .+++||.+.
T Consensus       179 e~hlydnqg  187 (1189)
T KOG2041|consen  179 ETHLYDNQG  187 (1189)
T ss_pred             cEEEecccc
Confidence            999999875

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.03  E-value=0.00034  Score=77.04  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             EEEEccCCCeEEEEEe----CCCe----EEEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356           42 VLDYSRNSRHLLVTAG----DDGT----LHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG  111 (568)
Q Consensus        42 ~Lafspdg~~lLaTgs----~DGt----V~VWDl~t~~~~--v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr  111 (568)
                      ++.|+....+.+.+..    .+|.    -.+|++..++..  ..........|.+++++|+...++.|+.||.|.+||..
T Consensus       210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~  289 (545)
T PF11768_consen  210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT  289 (545)
T ss_pred             EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC
Confidence            4678775555565542    3443    456777554422  11223467789999999999999999999999999987


Q ss_pred             CCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356          112 SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       112 t~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+... .....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       290 ~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  290 RGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            76433 2245566889999999999999999999999999754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.01  E-value=0.00027  Score=84.10  Aligned_cols=180  Identities=18%  Similarity=0.235  Sum_probs=118.3

Q ss_pred             ccCCCCEEEEEECCCcEEEE----ECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 008356            2 YNCKDEHLASISLSGDLILH----NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------   69 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VW----Dl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--------   69 (568)
                      |-++.+.|+.+..+|.|.+.    +..+.  ..++-+.-+..|.+++|+||++ +|+.+..+++|.+.+.+-        
T Consensus        83 yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l  159 (928)
T PF04762_consen   83 YLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPL  159 (928)
T ss_pred             eccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeec
Confidence            34566778888899999999    44332  2333333457899999999998 788888888887764210        


Q ss_pred             -----CC-c--------eeEEecc------------------------CCCCeEEEEEcCCCCEEEEEeC------CCeE
Q 008356           70 -----RS-P--------KVSWLKQ------------------------HSAPTAGISFSSDDKIIASVGL------DKKL  105 (568)
Q Consensus        70 -----~~-~--------~v~~l~~------------------------H~~~VtslafsPdg~~LaSgs~------DGtV  105 (568)
                           +. .        +...+.+                        +...-..|.|-.||.++++.+-      -+.+
T Consensus       160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i  239 (928)
T PF04762_consen  160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI  239 (928)
T ss_pred             CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence                 00 0        0000100                        2334567889999999998764      2579


Q ss_pred             EEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 008356          106 YTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV  181 (568)
Q Consensus       106 ~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~  181 (568)
                      +||+-+ |....+- ...+--.+++|.|.|++||+...   ...|.+|.-++-..-.-.++.......|..+.|+.++..
T Consensus       240 RVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~i  318 (928)
T PF04762_consen  240 RVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEI  318 (928)
T ss_pred             EEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCE
Confidence            999965 5544333 23344457899999999998765   345888876654322222222234567999999999999


Q ss_pred             EEEe
Q 008356          182 FIDE  185 (568)
Q Consensus       182 Las~  185 (568)
                      |+..
T Consensus       319 LAv~  322 (928)
T PF04762_consen  319 LAVW  322 (928)
T ss_pred             EEEE
Confidence            8875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.01  E-value=2.9e-05  Score=86.16  Aligned_cols=145  Identities=12%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------------ceeEEeccCCCCeEEEEEcCCCCEEEEEe
Q 008356           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------------PKVSWLKQHSAPTAGISFSSDDKIIASVG  100 (568)
Q Consensus        35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--------------~~v~~l~~H~~~VtslafsPdg~~LaSgs  100 (568)
                      +......|+.|+.+.. ++++|+.||.++|..+.+..              ..-+.+.+|...|.-+.|+.+.+.|-+..
T Consensus        12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            3456789999999887 89999999999999885432              11346789999999999999889999999


Q ss_pred             CCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          101 LDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       101 ~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      .+|.|.+|-+-.+.-....   ..+..|.+++|+-+|..++....||.|.|=.+++..---+.+.    ......+.|++
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g~~l~hv~ws~  166 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----GQLLAHVLWSE  166 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----hheccceeecc
Confidence            9999999999877644322   3567799999999999999999999999988887532112222    12345678888


Q ss_pred             CCCeEEE
Q 008356          178 AKPVFID  184 (568)
Q Consensus       178 dg~~Las  184 (568)
                      |.+.++.
T Consensus       167 D~~~~Lf  173 (1189)
T KOG2041|consen  167 DLEQALF  173 (1189)
T ss_pred             cHHHHHh
Confidence            7655443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.00  E-value=0.0002  Score=85.23  Aligned_cols=173  Identities=17%  Similarity=0.209  Sum_probs=111.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC---------------C--------CceeEEeeC-----------------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA---------------S--------GAKAAELKD-----------------------   34 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~---------------t--------g~~v~~l~~-----------------------   34 (568)
                      +||||++.|+....+|+|.+..-.               .        |+...+|++                       
T Consensus       127 ~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~  206 (928)
T PF04762_consen  127 SWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKL  206 (928)
T ss_pred             EECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcc
Confidence            599999999999999998887521               0        111112211                       


Q ss_pred             -CCCCcEEEEEEccCCCeEEEEEeC---C---CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC---CCe
Q 008356           35 -PNEQVLRVLDYSRNSRHLLVTAGD---D---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DKK  104 (568)
Q Consensus        35 -~h~~~Vs~Lafspdg~~lLaTgs~---D---GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~---DGt  104 (568)
                       .....+ .|.|..||. +|++.+-   .   ..++||+-++.  .......-.+--.+++|-|.|++|++...   ...
T Consensus       207 s~dd~~~-~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~  282 (928)
T PF04762_consen  207 SWDDGRV-RISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD  282 (928)
T ss_pred             ccCCCce-EEEECCCCc-EEEEEEEEcCCCceeEEEEECCCce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence             011233 488999998 6766653   3   57999997632  22223333344567899999999998874   345


Q ss_pred             EEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356          105 LYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (568)
Q Consensus       105 V~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg  179 (568)
                      |.+|.- +|..-..|     .....|..++|+.|+.+||+...|. |.+|-..+..--++..-.+.....+..+.|+|..
T Consensus       283 VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  283 VVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             EEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            777763 33333333     2456799999999999999988665 9999988764222222222334455669999964

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=4e-05  Score=82.92  Aligned_cols=146  Identities=20%  Similarity=0.239  Sum_probs=102.6

Q ss_pred             CCCEEEEEECCCcEEEEECCC-C------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--E
Q 008356            5 KDEHLASISLSGDLILHNLAS-G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--S   75 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~t-g------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v--~   75 (568)
                      +.+-+++++.|.+|++|.++. +      .+..+++. |+..|.++.|..+-+ .  .++.||-|++||.--+....  .
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr-~--i~ScD~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLR-S--IASCDGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccc-e--eeeccCcceeecccccchhHhhh
Confidence            346688999999999999863 2      13445555 778899999998866 3  44678999999974443222  1


Q ss_pred             EeccCCCCeEEEEEcC--CCCEE-EEEeCCCeEEEEECCCCceeeEee------cCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           76 WLKQHSAPTAGISFSS--DDKII-ASVGLDKKLYTYDPGSRRPSSCIT------YEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        76 ~l~~H~~~VtslafsP--dg~~L-aSgs~DGtV~IWDlrt~~~v~~~~------h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                      .-..|. .+..+...+  +...+ +-|+...+|+++|-|..+....+.      ....+++++..+.|++++++-.+|.|
T Consensus       822 dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  822 DAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             cCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence            112222 233333334  23333 334678899999999877654442      33568999999999999999999999


Q ss_pred             EEEECCCCC
Q 008356          147 VFYDIRGKP  155 (568)
Q Consensus       147 ~VWDlrt~~  155 (568)
                      .+.|.|+++
T Consensus       901 ~~LDaR~G~  909 (1034)
T KOG4190|consen  901 AILDARNGK  909 (1034)
T ss_pred             EEEecCCCc
Confidence            999999983

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.99  E-value=0.0017  Score=67.46  Aligned_cols=198  Identities=16%  Similarity=0.154  Sum_probs=133.1

Q ss_pred             ccC-CCCEEEEEECCCc-EEEEECCCCceeEEeeCCCCCcE-EEEEEccCCCeEEEEEe-----CCCeEEEEECCCCCce
Q 008356            2 YNC-KDEHLASISLSGD-LILHNLASGAKAAELKDPNEQVL-RVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSPK   73 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~-V~VWDl~tg~~v~~l~~~h~~~V-s~Lafspdg~~lLaTgs-----~DGtV~VWDl~t~~~~   73 (568)
                      .+| ....++.+-.-|+ ..+||..+++....+......-. -.-.|+++|+ +|++.-     ..|.|-|||....-..
T Consensus        12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~r   90 (305)
T PF07433_consen   12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYRR   90 (305)
T ss_pred             eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcEE
Confidence            467 4455666666664 77899999998877765322211 1357999999 566543     3478999999855556


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCceeeEee-----cCCCeEEEEE
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVGL------------------DKKLYTYDPGSRRPSSCIT-----YEAPFSSLAF  130 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs~------------------DGtV~IWDlrt~~~v~~~~-----h~~~ItsLaf  130 (568)
                      +..+..|.-....+.+.||++.|+++..                  +-.|.+.|.++++.+....     |.-.|+.+++
T Consensus        91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~  170 (305)
T PF07433_consen   91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV  170 (305)
T ss_pred             EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence            7788888877888999999988776631                  2257777888888776542     5567999999


Q ss_pred             ecCCCEEEEEEcCCe-------EEEEECCCCCCceEEEee-----cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356          131 IDDDWILTAGTSNGR-------VVFYDIRGKPQPLTVLRA-----CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA  198 (568)
Q Consensus       131 sPdg~~LasGs~DG~-------V~VWDlrt~~~~v~~l~~-----~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s  198 (568)
                      .++|..++..-..|.       |-+++....   ...+..     ..-.+.|-+|+++.++.+++.           ++-
T Consensus       171 ~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-----------tsP  236 (305)
T PF07433_consen  171 DGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-----------TSP  236 (305)
T ss_pred             cCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEE-----------ECC
Confidence            999988777665543       445544432   122221     123466888999887655533           334


Q ss_pred             CCCcEEcCCCCCCCcc
Q 008356          199 VGDSILMPDPLPSVTT  214 (568)
Q Consensus       199 ~Dg~V~VWDlr~~~~~  214 (568)
                      ..+.+.+||.......
T Consensus       237 rGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLL  252 (305)
T ss_pred             CCCEEEEEECCCCCEe
Confidence            5788889987765543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.00017  Score=81.44  Aligned_cols=135  Identities=17%  Similarity=0.220  Sum_probs=99.2

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      .+++|+.|..+|.|++++.. +.. ..... |...      ..+|. ++++|+.||+|.|-.+.+...  ........++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~-~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~--~~~~df~rpi  115 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQ-GNP-KTNFD-HSSS------ILEGE-YVASCSDDGKVVIGSLFTDDE--ITQYDFKRPI  115 (846)
T ss_pred             hcceeeeccccceEEEEecC-Ccc-ccccc-cccc------ccCCc-eEEEecCCCcEEEeeccCCcc--ceeEecCCcc
Confidence            36789999999999999963 443 23322 2222      55787 899999999999999876653  2223456789


Q ss_pred             EEEEEcCC-----CCEEEEEeCCCeEEEEECC---CCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           85 AGISFSSD-----DKIIASVGLDKKLYTYDPG---SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        85 tslafsPd-----g~~LaSgs~DGtV~IWDlr---t~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .+++++|+     .+.+++||..| |.++.-+   ....+......++|.++.|.  |+++|=+..+| |+|||+....
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~  190 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ  190 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence            99999997     57899999999 7777533   22223233578899999998  77888887776 9999998764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.95  E-value=2.8e-05  Score=55.00  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=34.8

Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD  109 (568)
                      .+..+.+|...|++|+|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3677899999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.93  E-value=0.0026  Score=67.78  Aligned_cols=143  Identities=6%  Similarity=0.027  Sum_probs=97.7

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCC
Q 008356            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGR   70 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---------~DGtV~VWDl~t~   70 (568)
                      ++..+++-...     +.|.+.|..+++.+..+.......  .+ ++|+++.++++..         ++..|.+||..+.
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~   87 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH   87 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence            34445544333     899999999999998888644433  34 9999997777777         7899999999988


Q ss_pred             CceeEEeccC-------CCCeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE
Q 008356           71 SPKVSWLKQH-------SAPTAGISFSSDDKIIASVG-L-DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        71 ~~~v~~l~~H-------~~~VtslafsPdg~~LaSgs-~-DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs  141 (568)
                      +. +..+..-       ......++++|||++|+... . +..|.++|+.+++.+..+...+...-.....+..++  -+
T Consensus        88 ~~-~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~--~~  164 (352)
T TIGR02658        88 LP-IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM--HC  164 (352)
T ss_pred             cE-EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE--Ee
Confidence            74 3333321       22345789999999998776 3 689999999999999888654433333333333332  23


Q ss_pred             cCCeEEEEECCC
Q 008356          142 SNGRVVFYDIRG  153 (568)
Q Consensus       142 ~DG~V~VWDlrt  153 (568)
                      .||......+..
T Consensus       165 ~Dg~~~~v~~d~  176 (352)
T TIGR02658       165 RDGSLAKVGYGT  176 (352)
T ss_pred             ecCceEEEEecC
Confidence            455555544443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.91  E-value=0.0013  Score=64.77  Aligned_cols=185  Identities=15%  Similarity=0.076  Sum_probs=110.9

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS---   81 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~---   81 (568)
                      ++++++++..++.|+.||..+|+.+..+..... ..... ...+ . .++.+..++.|+.+|..+++..........   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~-~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDG-G-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEET-T-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecc-c-ccccccceeeeEecccCCcceeeeecccccccc
Confidence            577888888999999999999998887775221 11111 2223 3 466677888999999988885433222111   


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC-C----------eEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA-P----------FSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~-~----------ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      ..........++..++.+..++.|..+|+++|+.+....... .          +..-....++ .++++..++.+..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD  189 (238)
T ss_dssp             STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred             ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence            112222233348888888889999999999999887764322 1          1122222244 777777777644449


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.+++..   ....  ...+..+ ....           ++.+++.. .++.|..||++...
T Consensus       190 ~~tg~~~---w~~~--~~~~~~~-~~~~-----------~~~l~~~~-~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  190 LATGEKL---WSKP--ISGIYSL-PSVD-----------GGTLYVTS-SDGRLYALDLKTGK  233 (238)
T ss_dssp             TTTTEEE---EEEC--SS-ECEC-EECC-----------CTEEEEEE-TTTEEEEEETTTTE
T ss_pred             CCCCCEE---EEec--CCCccCC-ceee-----------CCEEEEEe-CCCEEEEEECCCCC
Confidence            9888422   2211  1222221 1122           33344444 68999999987654

...

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.90  E-value=0.00099  Score=72.08  Aligned_cols=193  Identities=13%  Similarity=0.152  Sum_probs=127.6

Q ss_pred             CccCCCCEEEEEECC---------------CcEEEEECCCCceeEEeeCCCCC--cEEEEEEccCCCeEEEEEeCCCeEE
Q 008356            1 MYNCKDEHLASISLS---------------GDLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTLH   63 (568)
Q Consensus         1 afSpdG~~LasGs~D---------------G~V~VWDl~tg~~v~~l~~~h~~--~Vs~Lafspdg~~lLaTgs~DGtV~   63 (568)
                      .|+|++++|.+=...               +.+.+||..+|..+..+......  .-..+.|+-++. +++-- -...++
T Consensus        78 ~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~  155 (561)
T COG5354          78 DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLY  155 (561)
T ss_pred             ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhh-ccCeEE
Confidence            378999999885433               35999999999999888764433  233678988876 44332 345699


Q ss_pred             EEECCCCCceeEEecc-CCCCeEEEEEcCC--CCEEEE-----EeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCC
Q 008356           64 LWDTTGRSPKVSWLKQ-HSAPTAGISFSSD--DKIIAS-----VGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDD  134 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~-H~~~VtslafsPd--g~~LaS-----gs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg  134 (568)
                      |+++..+-. ..-+.. -...|....|+|.  +..|+.     .+.++.+++|.+..+..+.... .+-.-..+.|++.|
T Consensus       156 i~e~t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g  234 (561)
T COG5354         156 IHEITDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG  234 (561)
T ss_pred             EEecCCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence            999733221 111111 1356888899994  445553     3567889999998776655442 23334568899999


Q ss_pred             CEEEEEEc-----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcE
Q 008356          135 WILTAGTS-----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI  203 (568)
Q Consensus       135 ~~LasGs~-----------DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V  203 (568)
                      ++|++--.           ...++|++++....++..    ...++|..++|.|.++.+          .+++|-++..+
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F----------~vi~g~~pa~~  300 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRF----------AVISGYMPASV  300 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCce----------eEEecccccce
Confidence            88775311           345889999866544332    346899999999975444          44555667788


Q ss_pred             EcCCCCC
Q 008356          204 LMPDPLP  210 (568)
Q Consensus       204 ~VWDlr~  210 (568)
                      .++|++.
T Consensus       301 s~~~lr~  307 (561)
T COG5354         301 SVFDLRG  307 (561)
T ss_pred             eeccccc
Confidence            8888764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.90  E-value=0.0014  Score=69.94  Aligned_cols=142  Identities=12%  Similarity=0.163  Sum_probs=95.2

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      .++++++++.+|.|+.+|..+|+.+..+.... ........  ++. .++.++.++.|+.+|..+++..  +.......+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~~--W~~~~~~~~  137 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKEL--WRAKLSSEV  137 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCC-EEEEEcCCCEEEEEECCCCcEe--eeeccCcee
Confidence            36678889899999999999999887665422 22222222  344 5778889999999999888732  222222323


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeE------EEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS------SLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~It------sLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .+.-.. .+..++.+..++.|+.||.++++.+..+.......      +....  +..++++..++.|..+|+++++
T Consensus       138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence            221111 35677778889999999999999877764433221      11222  3477888889999999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.84  E-value=0.0053  Score=63.84  Aligned_cols=171  Identities=14%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             CccCCCCEEEEEEC-----CCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe------CCCe-------
Q 008356            1 MYNCKDEHLASISL-----SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------DDGT-------   61 (568)
Q Consensus         1 afSpdG~~LasGs~-----DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs------~DGt-------   61 (568)
                      .|++||++|++.-.     .|.|-|||.. .-+.+.++..+--+ -..+.+.|+++.+++.-+      +.|.       
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG-PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG-PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC-hhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            48999999998644     4889999998 66778888863333 356889999974443311      1222       


Q ss_pred             ----EEEEECCCCCcee-EEe--ccCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCceeeEe--------
Q 008356           62 ----LHLWDTTGRSPKV-SWL--KQHSAPTAGISFSSDDKIIASVGLDK-------KLYTYDPGSRRPSSCI--------  119 (568)
Q Consensus        62 ----V~VWDl~t~~~~v-~~l--~~H~~~VtslafsPdg~~LaSgs~DG-------tV~IWDlrt~~~v~~~--------  119 (568)
                          +...|..+++... ..+  .-|...|.-+++.++|..++..-..|       -|.+++...  .+..+        
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~  213 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWR  213 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHH
Confidence                3334444444221 123  23666789999998887777665444       244444332  22222        


Q ss_pred             ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356          120 TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (568)
Q Consensus       120 ~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg  179 (568)
                      ...+.|-+|+++.++.++++.+ .-+.+.+||..++. .+...    .-..+..++-.+++
T Consensus       214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~----~l~D~cGva~~~~~  269 (305)
T PF07433_consen  214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSV----PLPDACGVAPTDDG  269 (305)
T ss_pred             hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-Eeecc----ccCceeeeeecCCc
Confidence            2457799999999998876655 67789999999873 22221    22345566655544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.83  E-value=5.6e-05  Score=53.46  Aligned_cols=38  Identities=18%  Similarity=0.539  Sum_probs=34.0

Q ss_pred             ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356           27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (568)
Q Consensus        27 ~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD   66 (568)
                      +++..+++ |...|.+|+|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~-h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRG-HSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEES-SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcC-CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            56778886 888999999999987 899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.83  E-value=4.9e-06  Score=91.43  Aligned_cols=195  Identities=14%  Similarity=0.174  Sum_probs=127.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCcee-EEeeCCCCCcEEEEEEccCCCeEEEEEe----CCCeEEEEECCCC--Cce--eEE
Q 008356            6 DEHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGR--SPK--VSW   76 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v-~~l~~~h~~~Vs~Lafspdg~~lLaTgs----~DGtV~VWDl~t~--~~~--v~~   76 (568)
                      ...+++|..+|.|.+-.+.....- .++...+...+++++|++-..+.||+|-    .|-.+.|||+...  .++  ...
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            346788889999999887644332 5555567788999999997666777774    3567999999765  211  111


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEE-CCCC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD-IRGK  154 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWD-lrt~  154 (568)
                      ..+.....+.++|..+.+++++|...+.+.++|+|........-....+..+...| .+++++.-. ||.|.+|| .++-
T Consensus       150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni  228 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI  228 (783)
T ss_pred             ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh
Confidence            12244556789999899999999999999999998432221111233455666777 566776655 99999999 6665


Q ss_pred             CCceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          155 PQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       155 ~~~v~~l~~~--~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      +.++..+...  .....+..++|.|..          .+.+.+..-..+.|+++|++.-
T Consensus       229 enpl~~i~~~~N~~~~~l~~~aycPtr----------tglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  229 ENPLQIILRNENKKPKQLFALAYCPTR----------TGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             ccHHHHHhhCCCCcccceeeEEeccCC----------cchhhhhccCcceEEEeccccc
Confidence            5554433211  111248899999952          2222222233678889987653

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.81  E-value=0.0025  Score=71.83  Aligned_cols=208  Identities=12%  Similarity=0.031  Sum_probs=126.0

Q ss_pred             cCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE--e----------------------
Q 008356            3 NCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA--G----------------------   57 (568)
Q Consensus         3 SpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg--s----------------------   57 (568)
                      .+||+.+...+ ..+.+.+.|.++.+...++..  .+....++++++++.+++++  +                      
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            45676554332 346778888887776666653  22345567788887444443  1                      


Q ss_pred             ---------------CCCeEEEEECCC----CCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce--
Q 008356           58 ---------------DDGTLHLWDTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRP--  115 (568)
Q Consensus        58 ---------------~DGtV~VWDl~t----~~~~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~--  115 (568)
                                     .++.|.+.|..+    ... +.....-......++++||++++++++ .+.+|.++|+.+.+.  
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                           124466777655    221 222223445578899999999987766 588999999987542  


Q ss_pred             ----------eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC------CC---ceEEEee---cCCCCCeeEE
Q 008356          116 ----------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK------PQ---PLTVLRA---CSSSEAVSSL  173 (568)
Q Consensus       116 ----------v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~------~~---~v~~l~~---~~h~~~VtsL  173 (568)
                                +..+.........+|.++|+...+-.-|..|..||+...      ++   .+..+..   .+|......=
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~  437 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE  437 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence                      333344555667889999988888889999999999751      11   1222221   1222222222


Q ss_pred             EEccCCCeEEEecc------------CCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          174 CWQRAKPVFIDETT------------CKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       174 afspdg~~Las~s~------------ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .-.++|+||++...            ......|+--+.|....|+|.-.+..
T Consensus       438 t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p~~~E  489 (635)
T PRK02888        438 TKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHDGPTFAE  489 (635)
T ss_pred             cCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEecCCCCCC
Confidence            33678888876532            22333556666677777777655443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00076  Score=71.18  Aligned_cols=135  Identities=12%  Similarity=0.063  Sum_probs=88.5

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+|..+ +|..++.+.+|.|.|+++...+..+..+  ..+.+++|+.++.++|++|..+|.|.|||++..+..+..+.+
T Consensus       200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA  277 (463)
T ss_pred             ccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence            5788776 7888999999999999998888888763  567778999999999999999999999999876543332222


Q ss_pred             --CCCCeEEEEEc------CCCCEEEEEeCCCeEEEEECCC----CceeeEeecCCCeEEEEEecCCCEEEE
Q 008356           80 --HSAPTAGISFS------SDDKIIASVGLDKKLYTYDPGS----RRPSSCITYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        80 --H~~~Vtslafs------Pdg~~LaSgs~DGtV~IWDlrt----~~~v~~~~h~~~ItsLafsPdg~~Las  139 (568)
                        ...+|..++.-      +.+.+++....+  +..|.+.-    .-++..+...+.+.++.+++-.+.+++
T Consensus       278 ~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  278 NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence              22334443332      233334333332  45565532    222333345566667777764444444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.001  Score=75.27  Aligned_cols=140  Identities=21%  Similarity=0.267  Sum_probs=105.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-----CCeEEEEEeCCCeEEEEECCCCCce-eEEec
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLK   78 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-----g~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~   78 (568)
                      +|+++++|+.||+|.|..+.+.+...++.  ....+..|+++|+     .+ .+++|+.-| +.++.-.--... ...+.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~  157 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLS  157 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeee
Confidence            68999999999999999998888877766  4567888999998     33 689999999 888875321111 12456


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC-CC------eEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE-AP------FSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~-~~------ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      ...++|.++.|.  |++|+-++.+| |++||+.+++.+..+... ..      ...+.|.++. .|+. +...+|+|..+
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVI-GW~d~v~i~~I  232 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVI-GWGDSVKICSI  232 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEE-ecCCeEEEEEE
Confidence            678899999998  88999999888 999999998887766321 22      3356776653 4444 45567999988


Q ss_pred             CC
Q 008356          152 RG  153 (568)
Q Consensus       152 rt  153 (568)
                      +.
T Consensus       233 ~~  234 (846)
T KOG2066|consen  233 KK  234 (846)
T ss_pred             ec
Confidence            83

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.76  E-value=0.0006  Score=76.75  Aligned_cols=187  Identities=14%  Similarity=0.104  Sum_probs=131.1

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp---dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      +||++...|.|.|||...+..+..+.. +.+.+.+++|-+   +.+++|++-....+|.+|+.++++. ...........
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iL  158 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEIL  158 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccccCCcce
Confidence            577788899999999998888888874 667778888865   3446788878889999999998873 33333334557


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCC-------CceeeEe-ecCC-------------------------CeEEEEE
Q 008356           85 AGISFSS-DDKIIASVGLDKKLYTYDPGS-------RRPSSCI-TYEA-------------------------PFSSLAF  130 (568)
Q Consensus        85 tslafsP-dg~~LaSgs~DGtV~IWDlrt-------~~~v~~~-~h~~-------------------------~ItsLaf  130 (568)
                      .|+.+.| |.++++.-+..|.|.+.+.-.       ++.+++. .|..                         .+-.++|
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            7899999 888888888888888776532       2222221 1111                         0224567


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       131 sPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +|.-+.++.......+.|+|++-. +++.++..  ..+.+.=+.|-|++          ....|++...||.+.+|--+
T Consensus       239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvpi--er~~akfv~vlP~~----------~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVPI--ERGGAKFVDVLPDP----------RRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             ChhhhceEEEEeccceEEEcchhh-ceeEEEEe--ccCCcceeEeccCC----------CcceEEEEecCCeEEEEEee
Confidence            887666666677888999999876 34444442  33555667777753          55677888889999999543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.75  E-value=0.0021  Score=63.13  Aligned_cols=137  Identities=19%  Similarity=0.102  Sum_probs=89.4

Q ss_pred             CCCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 008356           14 LSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD   92 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd   92 (568)
                      .+|.|..||..+|+.+....... .....+..+ .++. .+++++.++.|+.||..+++...+. . ....+.... ..+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~-~-~~~~~~~~~-~~~   75 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRF-D-LPGPISGAP-VVD   75 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEE-E-CSSCGGSGE-EEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEe-e-cccccccee-eec
Confidence            37899999999999988876421 122221122 2344 5777789999999999888733222 2 122222211 224


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeEe-ecC----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           93 DKIIASVGLDKKLYTYDPGSRRPSSCI-TYE----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        93 g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~----~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      +..++.+..++.|+.+|.++++.+... ...    .....+....++..++++..++.|..+|+++++
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            666777778889999999999998874 221    112233333348889999999999999999884

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.74  E-value=0.0002  Score=73.24  Aligned_cols=125  Identities=13%  Similarity=0.194  Sum_probs=91.1

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--CceeEEeccCC-----CCeEEEEEcC-CCCEEEEEeCCCeEE
Q 008356           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLY  106 (568)
Q Consensus        35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~--~~~v~~l~~H~-----~~VtslafsP-dg~~LaSgs~DGtV~  106 (568)
                      .|...|..+.|+.+.+ .+ ..++|=.|.+|++.-.  .-.+.-++.|.     .-|++..|+| ..+.+...+..|.|+
T Consensus       170 aH~yhiNSiS~NsD~e-t~-lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         170 AHPYHINSISFNSDKE-TL-LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             cceeEeeeeeecCchh-ee-eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            3555677888888766 34 4467889999998532  22244455554     4589999999 778888889999999


Q ss_pred             EEECCCCcee----eEe-------------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356          107 TYDPGSRRPS----SCI-------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus       107 IWDlrt~~~v----~~~-------------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~  162 (568)
                      +-|+|.....    ..+             .--..|..+.|+++|+++++-.. -+|+|||.+..+.|++.+.
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence            9999853221    111             12345889999999999987765 5799999999988888775

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.72  E-value=0.0026  Score=67.83  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCC----------cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQ----------VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~----------~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      ..++.+..+|.|..+|+++|+.+.+.......          ......+  .+. .++.++.+|.++.||..+++..  +
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~tG~~~--W  265 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLRSGRVL--W  265 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECCCCcEE--E
Confidence            46777888899999999999876544321100          0011111  133 5777889999999999887632  2


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCC-eEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~-ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ...... .....  ..+.+++.++.||.|+.+|..+++.+... ..... ......  .+..|++++.+|.|+++|.+++
T Consensus       266 ~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       266 KRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             eeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence            222211 11122  24678888899999999999999877655 22222 222222  3678999999999999999887


Q ss_pred             C
Q 008356          155 P  155 (568)
Q Consensus       155 ~  155 (568)
                      +
T Consensus       341 ~  341 (377)
T TIGR03300       341 S  341 (377)
T ss_pred             C
Confidence            4

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.69  E-value=0.00028  Score=80.59  Aligned_cols=143  Identities=14%  Similarity=0.151  Sum_probs=107.4

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCCCCcee
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKV   74 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~---------DGtV~VWDl~t~~~~v   74 (568)
                      .+++++.+|...|+|.+-|..+.+.+.++.. |.+.|.+  |+-.|+ +|++++.         |.-|+|||++.... +
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSD--fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmra-l  259 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISD--FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRA-L  259 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeec-cccceee--eeccCC-eEEEeecccccccccccchhhhhhhhhhhc-c
Confidence            3578899999999999999999999999997 7777875  455565 7777764         44589999976552 2


Q ss_pred             EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE---CCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYD---PGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        75 ~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWD---lrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      .-+.-+.+ ..-+.|+| -...+++++..|...+.|   +.+.. -+..+ .....|..++++++++.++.|..+|.|.+
T Consensus       260 ~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~  338 (1118)
T KOG1275|consen  260 SPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL  338 (1118)
T ss_pred             CCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence            22222333 25577888 567788999999999999   33331 12222 45556999999999999999999999999


Q ss_pred             EECC
Q 008356          149 YDIR  152 (568)
Q Consensus       149 WDlr  152 (568)
                      |.-+
T Consensus       339 wa~~  342 (1118)
T KOG1275|consen  339 WADR  342 (1118)
T ss_pred             ecCC
Confidence            9844

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=0.0009  Score=75.39  Aligned_cols=147  Identities=14%  Similarity=0.145  Sum_probs=113.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-----------CCeEEEEEeCCCeEEEEECCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----------SRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-----------g~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      |+|.| +||.|+ ...|.|-|..+-+.+..+.. |...|+.+.|.|.           ..-+|+++...|.|.+||....
T Consensus        23 w~~~G-LiAygs-hslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   23 WSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA   99 (1062)
T ss_pred             cCccc-eEEEec-CceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence            45544 566665 45789999989898888885 6678888999873           2235778888999999999877


Q ss_pred             CceeEEeccCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeeEeecCCC-eEEEEEec-CCCEEEEEEcCC
Q 008356           71 SPKVSWLKQHSAPTAGISFSS---DD-KIIASVGLDKKLYTYDPGSRRPSSCITYEAP-FSSLAFID-DDWILTAGTSNG  144 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsP---dg-~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~-ItsLafsP-dg~~LasGs~DG  144 (568)
                      . .+.++..|..+|.+++|-+   +. ..|+.-....+|.+|+..+|+.+........ ..|+.+.| |.+.+..-+..|
T Consensus       100 s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen  100 S-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             h-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence            6 3667888899999999987   33 4677777888999999999998887755444 55689998 666777767778


Q ss_pred             eEEEEECC
Q 008356          145 RVVFYDIR  152 (568)
Q Consensus       145 ~V~VWDlr  152 (568)
                      .|.+.+.-
T Consensus       179 ~vl~~~~l  186 (1062)
T KOG1912|consen  179 FVLSCKDL  186 (1062)
T ss_pred             eEEEEecc
Confidence            88777664

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.65  E-value=0.0023  Score=67.00  Aligned_cols=178  Identities=12%  Similarity=0.172  Sum_probs=109.7

Q ss_pred             CcEEEEECCCCceeEEeeCCCCCcEEEEEEcc---C---CCeEEEEEeC----------CCeEEEEECCCC-----Ccee
Q 008356           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSR---N---SRHLLVTAGD----------DGTLHLWDTTGR-----SPKV   74 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp---d---g~~lLaTgs~----------DGtV~VWDl~t~-----~~~v   74 (568)
                      ..|++.|..+.+.+..+.-...+.+.+++...   +   ...+|+.|..          .|.|.+|++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36899998888877776654566666555433   2   1457776642          289999999874     2222


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEeecCC--CeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~~h~~--~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      .......++|++++-. +++ |+.+. .+.|++|++...+ ....-.+..  .+.++...  ++++++|.....|.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            2234457889998877 444 44433 4789999998877 544443433  45555554  669999998888888865


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.....+..+........++++.|-.++            ..++.+..++.|.++...+
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~------------~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDE------------DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SS------------SEEEEEETTSEEEEEEE-S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCC------------cEEEEEcCCCeEEEEEECC
Confidence            5433323444333345567788777542            2555666688888877653

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.63  E-value=0.0015  Score=72.11  Aligned_cols=111  Identities=15%  Similarity=0.220  Sum_probs=79.4

Q ss_pred             CCeEEEEEcC-CCCEEEEEe----CCC----eEEEEECCCCcee----eEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           82 APTAGISFSS-DDKIIASVG----LDK----KLYTYDPGSRRPS----SCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        82 ~~VtslafsP-dg~~LaSgs----~DG----tV~IWDlrt~~~v----~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      ....++.|+- +.+.+.+..    .+|    .-++|++...+..    ..+.....+.|++++|+...|+.|+.||.|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3456778887 666676653    344    2456777655432    23468899999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ||...+.   ....  ...-.++.++|||+|.+++.+            +..|.+.+||+.
T Consensus       286 yD~~~~~---t~~~--ka~~~P~~iaWHp~gai~~V~------------s~qGelQ~FD~A  329 (545)
T PF11768_consen  286 YDTTRGV---TLLA--KAEFIPTLIAWHPDGAIFVVG------------SEQGELQCFDMA  329 (545)
T ss_pred             EEcCCCe---eeee--eecccceEEEEcCCCcEEEEE------------cCCceEEEEEee
Confidence            9998652   2222  234557889999976655554            457999999974

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.0014  Score=71.63  Aligned_cols=174  Identities=17%  Similarity=0.196  Sum_probs=114.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe-----------CCCeEEEEECCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------DDGTLHLWDTTGR   70 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-----------~DGtV~VWDl~t~   70 (568)
                      |||.|.||++-...| |.+|--.+-..++.+.  |.+ |.-+.|+|+.+ +|+|-+           +...++|||+.++
T Consensus       218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~-Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPG-VQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             ecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCC-ceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcccc
Confidence            899999999987766 8899876666666665  544 56689999998 788753           2257999999988


Q ss_pred             CceeEEecc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc----
Q 008356           71 SPKVSWLKQ---HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS----  142 (568)
Q Consensus        71 ~~~v~~l~~---H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~----  142 (568)
                      ..+ +.+..   ....---+.|+.|+++++....| .|.||+...-.++.... .-..|....|+|.+++||.=..    
T Consensus       293 ~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  293 LLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             chh-cceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            743 22222   22222346799999999988775 48999876633322111 3356889999999888876432    


Q ss_pred             -CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          143 -NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       143 -DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                       -.++.|-.+-.+. .++..+  -|.-.=..+.|..+|.+|+.-
T Consensus       371 ~parvtL~evPs~~-~iRt~n--lfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  371 IPARVTLMEVPSKR-EIRTKN--LFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             CcceEEEEecCccc-eeeecc--ceeeeccEEEeccCCcEEEEE
Confidence             1246666655542 222222  122233457888888888754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00056  Score=72.17  Aligned_cols=115  Identities=19%  Similarity=0.207  Sum_probs=86.8

Q ss_pred             EEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecC-CCEEEE
Q 008356           62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTA  139 (568)
Q Consensus        62 V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd-g~~Las  139 (568)
                      |++.+-.+-+. ...+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+.....+++++|+-| .++|++
T Consensus       175 v~~l~~~~fks-sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKS-SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcch-hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence            44444444332 346677888999999999555 788999999999999999988888876689999999986 567888


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      |..+|.|.|||+|....++..+.......+|..++.-+
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~  291 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ  291 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence            99999999999998766555544322345565555444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.59  E-value=0.0032  Score=74.21  Aligned_cols=179  Identities=18%  Similarity=0.240  Sum_probs=115.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----CCCce----
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----GRSPK----   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~----t~~~~----   73 (568)
                      |.-+.+.|+.+...|.|.+-|.++....  +-+.....|.+++|+||++ +++....+++|.+-+-.    ..++.    
T Consensus        76 fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i~E~~L~~d~  152 (1265)
T KOG1920|consen   76 FLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPIAEKPLDADD  152 (1265)
T ss_pred             EecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccchhcccccccc
Confidence            3446677888899999999988766532  3333457789999999998 77777777777665420    00000    


Q ss_pred             --------------eEEeccC---------------------CCCeEEEEEcCCCCEEEEE-----eCCCeEEEEECCCC
Q 008356           74 --------------VSWLKQH---------------------SAPTAGISFSSDDKIIASV-----GLDKKLYTYDPGSR  113 (568)
Q Consensus        74 --------------v~~l~~H---------------------~~~VtslafsPdg~~LaSg-----s~DGtV~IWDlrt~  113 (568)
                                    ...+++.                     ...=+.|.|--||.++++.     ...+.|++||.+ +
T Consensus       153 ~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g  231 (1265)
T KOG1920|consen  153 ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G  231 (1265)
T ss_pred             ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence                          0111110                     1112358899999999873     233799999987 4


Q ss_pred             ceeeEe-ecCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356          114 RPSSCI-TYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       114 ~~v~~~-~h~~~ItsLafsPdg~~LasGs---~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      ..-..- ...+.-.+++|-|.|.++++-.   .|+.|.+|.-++-..-.-.+........|..++|+.++..|+.
T Consensus       232 ~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  232 ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            332222 3445566899999999998854   3567999987764322222322233344899999998877765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0024  Score=68.37  Aligned_cols=201  Identities=9%  Similarity=0.065  Sum_probs=133.3

Q ss_pred             cCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 008356            3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRS-PKVSWL   77 (568)
Q Consensus         3 SpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~~-~~v~~l   77 (568)
                      +-+|.++.+++. |..++++|+++-..+.-++... .+.+. +..++...  .+.+...+++.+.|+|-.... +.....
T Consensus        62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence            456777888777 9999999998766553333211 12222 12222211  233444578999999986554 334555


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeeE----------eecCCCeEEEEEecCCCEEEEEE
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------RRPSSC----------ITYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt------~~~v~~----------~~h~~~ItsLafsPdg~~LasGs  141 (568)
                      .-|..+|.++.+++-+..+++....|.|..|....      .+....          ...+....++.|+|++..+.+-.
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence            67999999999999999999999999999998773      111111          12456788999999999999999


Q ss_pred             cCCeEEEEECCCCCCceEEEeec------------------------------CC-CCCeeEEEEccCCCeEEEeccCCC
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRAC------------------------------SS-SEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~~------------------------------~h-~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      .|..|++++.++++. ++.+...                              .| ...-+.++|+..|++|+.+.  --
T Consensus       221 ~DrkVR~F~~KtGkl-vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t--~~  297 (558)
T KOG0882|consen  221 PDRKVRGFVFKTGKL-VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT--IL  297 (558)
T ss_pred             cccEEEEEEeccchh-hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec--ce
Confidence            999999999987531 1111000                              01 12346688888898888762  24


Q ss_pred             CeEEEEecCCCcEEcCC
Q 008356          191 ETALLGGAVGDSILMPD  207 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWD  207 (568)
                      +..++.-.....++++-
T Consensus       298 gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  298 GIKVINLDTNTVVRILG  314 (558)
T ss_pred             eEEEEEeecCeEEEEec
Confidence            55555555566666653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.00074  Score=75.53  Aligned_cols=147  Identities=16%  Similarity=0.205  Sum_probs=99.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-----EE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-----SW   76 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v-----~~   76 (568)
                      +...+++|+.|..-|.|++|+-..++....-.......+..+..+++.. ++|.|+..|.|.++-++...+..     ..
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            3456789999999999999997665543322222334455566777665 88999999999999986643221     11


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-----~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      -+.|...|++++|++++..+++|...|+|.+-.+....     ...++...+.|..+.+..  .+|++.+-- +..++++
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~-r~~Lc~t  196 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT-RCILCQT  196 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh-hhheeec
Confidence            23478899999999999999999999999988877621     112224567777776652  344443332 2344555


Q ss_pred             C
Q 008356          152 R  152 (568)
Q Consensus       152 r  152 (568)
                      +
T Consensus       197 E  197 (726)
T KOG3621|consen  197 E  197 (726)
T ss_pred             c
Confidence            4

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.40  E-value=0.005  Score=71.51  Aligned_cols=134  Identities=16%  Similarity=0.129  Sum_probs=93.2

Q ss_pred             CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC------eEEEEEeCCCeEEEEECCCCCceeEEe----ccCCCC
Q 008356           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR------HLLVTAGDDGTLHLWDTTGRSPKVSWL----KQHSAP   83 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~------~lLaTgs~DGtV~VWDl~t~~~~v~~l----~~H~~~   83 (568)
                      ....|+-+|++.|+.+.+.+.+....|.  .+.|+.+      .--+.|-.+..|..||.+-...++..-    ......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4578999999999999999985555455  4444321      135677888899999997543222211    123445


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      ..|++-..+ .+||+|+.+|.||+||--..+....+ +...+|..|..+.||++|++.+. ..|.|++.
T Consensus       580 Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            677766644 57899999999999994333323333 56889999999999999887665 56777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.055  Score=58.33  Aligned_cols=178  Identities=12%  Similarity=0.070  Sum_probs=120.1

Q ss_pred             ccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEec
Q 008356            2 YNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         2 fSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      .++.++.++ ....++.|.+.|..+.+....+....  .-..++++++++++.++-.  .++++.+.|-.+...... ..
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~  157 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP  157 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee
Confidence            456676444 44456899999988777776665433  4456899999986666555  368898888887774333 44


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceee-----EeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356           79 QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~-----~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW  149 (568)
                      ....+ ..+++.|+++.++.+. .++.|.+.|........     .+........+.++++|+++.+....   +.+...
T Consensus       158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence            43344 8899999999766665 78899999977765553     23344456788999999977765544   589999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      |............ .+.. ....+.++|+|+++...
T Consensus       237 d~~~~~v~~~~~~-~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         237 DTATGNVTATDLP-VGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             eCCCceEEEeccc-cccC-CCCceeECCCCCEEEEE
Confidence            9887632111111 1122 45668889987776554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.33  E-value=0.021  Score=58.12  Aligned_cols=181  Identities=12%  Similarity=0.139  Sum_probs=100.8

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--cee---
Q 008356            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKV---   74 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v---   74 (568)
                      +|+|+.+ ++++....+.|..++. +|+.++.+.-...+-...|++..++. ++++--.++.+.++++....  ...   
T Consensus        28 Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~  105 (248)
T PF06977_consen   28 TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADV  105 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEE
T ss_pred             EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhc
Confidence            4788766 5556667788888886 68888877654445567888987764 55555568999999983321  111   


Q ss_pred             EEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeEe---------ecCCCeEEEEEecC-CCE
Q 008356           75 SWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI---------TYEAPFSSLAFIDD-DWI  136 (568)
Q Consensus        75 ~~l-----~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---~~~v~~~---------~h~~~ItsLafsPd-g~~  136 (568)
                      ..+     ..++..+-.++|++.++.|+.+-+..-..+|.+..   ...+...         .....+..++++|. +.+
T Consensus       106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l  185 (248)
T PF06977_consen  106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL  185 (248)
T ss_dssp             EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred             eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence            111     13456689999999777777776665555665543   2222111         13345889999995 566


Q ss_pred             EEEEEcCCeEEEEECCCCCCceEEEeecC--C-----CCCeeEEEEccCCCeEEEe
Q 008356          137 LTAGTSNGRVVFYDIRGKPQPLTVLRACS--S-----SEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~~~v~~l~~~~--h-----~~~VtsLafspdg~~Las~  185 (568)
                      ++....+..|.++|....  ++..+....  |     -...-.|+|.++|...++.
T Consensus       186 liLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  186 LILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             EEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            777778888999995543  444444322  1     1246789999987665544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.32  E-value=0.011  Score=66.63  Aligned_cols=193  Identities=10%  Similarity=-0.048  Sum_probs=113.5

Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEE-------------------ccCCCeEEEEEeCCCeEE
Q 008356            4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDY-------------------SRNSRHLLVTAGDDGTLH   63 (568)
Q Consensus         4 pdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Laf-------------------spdg~~lLaTgs~DGtV~   63 (568)
                      .||++|..-.+ +..|...++...++-+.+..+....+..++|                   .++|+.+..+.-..+.+.
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS  218 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT  218 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence            46788887764 5667777777655544444333333333333                   334432222223345566


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCC
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----------------------------------------LDK  103 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs----------------------------------------~DG  103 (568)
                      +.|..+.+. ...+.. ......++++++++++++.+                                        .++
T Consensus       219 vID~etmeV-~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn  296 (635)
T PRK02888        219 AVDAETMEV-AWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS  296 (635)
T ss_pred             EEECccceE-EEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence            666665542 222221 22345567777777776664                                        234


Q ss_pred             eEEEEECCC-----CceeeEeecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCce-------EEE-eecCCCCC
Q 008356          104 KLYTYDPGS-----RRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPL-------TVL-RACSSSEA  169 (568)
Q Consensus       104 tV~IWDlrt-----~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~v-------~~l-~~~~h~~~  169 (568)
                      .|.++|.++     .+.+..+........+.++|||+++++++. +..|.|+|+...+..+       ..+ ....-...
T Consensus       297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG  376 (635)
T PRK02888        297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG  376 (635)
T ss_pred             EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence            588888887     456666777888889999999999888664 8999999998754211       111 10011122


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       170 VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ....+|..+|            ..+.+--.|..|..||+..
T Consensus       377 PLHTaFDg~G------------~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        377 PLHTAFDGRG------------NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEECCCC------------CEEEeEeecceeEEEehHH
Confidence            2345666544            3444455589999999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.28  E-value=0.0037  Score=68.71  Aligned_cols=159  Identities=14%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      ++||+|+.++++ .||...|+.....+....-      .-..++|...++  +++-..++.|.|+.--.... ...+.. 
T Consensus        39 s~npngr~v~V~-g~geY~iyt~~~~r~k~~G------~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~-~k~i~~-  107 (443)
T PF04053_consen   39 SHNPNGRFVLVC-GDGEYEIYTALAWRNKAFG------SGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEV-VKSIKL-  107 (443)
T ss_dssp             EE-TTSSEEEEE-ETTEEEEEETTTTEEEEEE------E-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-T-T------
T ss_pred             EECCCCCEEEEE-cCCEEEEEEccCCcccccC------ceeEEEEecCcc--EEEEECCCeEEEEEcCcccc-ceEEcC-
Confidence            378999999985 5778888885444433221      223478888554  77777789999964322221 111111 


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC------
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK------  154 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~------  154 (568)
                      ...+..+-.   |.+|+..+.+ .|.+||..+++.++.+.... |..+.|++++.+++..+.+ .+.|++.+..      
T Consensus       108 ~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~  181 (443)
T PF04053_consen  108 PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIP  181 (443)
T ss_dssp             SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBT
T ss_pred             CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhccccc
Confidence            112333332   7777776655 89999999999999987554 8999999999999999865 5666654432      


Q ss_pred             ----CCceEEEeecCCCCCeeEEEEccC
Q 008356          155 ----PQPLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       155 ----~~~v~~l~~~~h~~~VtsLafspd  178 (568)
                          +..+..+.  .-...|.+.+|..+
T Consensus       182 ~~g~e~~f~~~~--E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  182 EEGVEDAFELIH--EISERIKSGCWVED  207 (443)
T ss_dssp             TTB-GGGEEEEE--EE-S--SEEEEETT
T ss_pred             ccCchhceEEEE--EecceeEEEEEEcC
Confidence                11233333  12467899999876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.24  E-value=0.017  Score=62.20  Aligned_cols=144  Identities=15%  Similarity=0.068  Sum_probs=89.9

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      ++.++.++.+|.|+.+|.++|+.+...+.. .......... + . .++.+..++.|+.+|..+++..... . ...+..
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~-~-~~~~~~  193 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTV-N-LDVPSL  193 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeee-c-CCCCcc
Confidence            567778888999999999999988776542 1111111121 3 3 5667788999999999888743222 1 111110


Q ss_pred             EE--EEcC--CCCEEEEEeCCCeEEEEECCCCceeeEeecCCC--------eEEEEEec--CCCEEEEEEcCCeEEEEEC
Q 008356           86 GI--SFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--------FSSLAFID--DDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        86 sl--afsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~--------ItsLafsP--dg~~LasGs~DG~V~VWDl  151 (568)
                      .+  .-+|  .+..++.+..++.+..+|..+++.+.......+        ...+...|  .+..+++++.+|.+..+|+
T Consensus       194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence            00  0122  234577788899999999999987665432111        11111122  2557777888999999999


Q ss_pred             CCCC
Q 008356          152 RGKP  155 (568)
Q Consensus       152 rt~~  155 (568)
                      .+++
T Consensus       274 ~tG~  277 (394)
T PRK11138        274 RSGQ  277 (394)
T ss_pred             CCCC
Confidence            9875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.22  E-value=0.0065  Score=66.46  Aligned_cols=138  Identities=16%  Similarity=0.180  Sum_probs=91.4

Q ss_pred             CccCCCCEEEEEE-CCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASIS-LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs-~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~   75 (568)
                      +|+|||+.|+... .||  .|+++|+..+... .+.. ..+.-..=.|+|+|+.++++.+..|.  |.++|.++...  .
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~  319 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--T  319 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCcce-eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--e
Confidence            5899999877654 455  4777787666533 3432 22222345799999988888888886  55556666653  3


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLD-KK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~D-Gt--V~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~  142 (568)
                      .+......-..-.|+|||++|+..+.. |.  |.+.|+.++...+.+........-.|.+++..+...+.
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            333333333378899999999888753 43  77778777665666666666667778888877766544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.16  E-value=0.11  Score=56.75  Aligned_cols=60  Identities=13%  Similarity=0.198  Sum_probs=41.7

Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356          123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       123 ~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      +++..++.+|++++||.-..+|.+.|.+.+-.+ ....+.. .-......+.|.-+.-.++.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~-~~~~~p~~~~WCG~dav~l~  276 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE-KLCEFDT-DSKSPPKQMAWCGNDAVVLS  276 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccc-eeEEeec-CcCCCCcEEEEECCCcEEEE
Confidence            578999999999999999999999999876553 2233321 22356677888765444333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.12  E-value=0.013  Score=69.38  Aligned_cols=110  Identities=13%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             EEEccCCCeEEEEE----eCC-CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCC--
Q 008356           43 LDYSRNSRHLLVTA----GDD-GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG---LDKKLYTYDPGS--  112 (568)
Q Consensus        43 Lafspdg~~lLaTg----s~D-GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs---~DGtV~IWDlrt--  112 (568)
                      |.|--||+ ++++.    ..+ +.|+|||-++.-  -..-......=.+++|-|.|..|++..   .|+.|.+|.-+.  
T Consensus       201 IsWRgDg~-~fAVs~~~~~~~~RkirV~drEg~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  201 ISWRGDGE-YFAVSFVESETGTRKIRVYDREGAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             EEEccCCc-EEEEEEEeccCCceeEEEecccchh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            88999998 66662    223 789999987221  111222233446799999999998875   455788887443  


Q ss_pred             -CceeeEee-cCCCeEEEEEecCCCEEEE---EEcCCeEEEEECCCCC
Q 008356          113 -RRPSSCIT-YEAPFSSLAFIDDDWILTA---GTSNGRVVFYDIRGKP  155 (568)
Q Consensus       113 -~~~v~~~~-h~~~ItsLafsPdg~~Las---Gs~DG~V~VWDlrt~~  155 (568)
                       +.....+. ....|..++|+.++.+|++   ......|.+|-+.+..
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence             22222222 3334999999999999998   5555669999988753

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.0025  Score=72.49  Aligned_cols=106  Identities=13%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             CccCCCCEEEEEEC----CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISL----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~----DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      +|+|..-++++++.    .|.|-||- ++|++...+..  .-.+.+++|+|..- +|+.|-.-|.+.+|...+.+ ....
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e-~htv   96 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTE-THTV   96 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCce-eeee
Confidence            58999999988764    57888886 56665443332  12245699999864 78888899999999988776 3566


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG  111 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr  111 (568)
                      ...|+.+|..+.|+++|..++++..-|.|.+|.+.
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            77899999999999999999999999999999764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.09  E-value=0.023  Score=61.24  Aligned_cols=136  Identities=13%  Similarity=0.031  Sum_probs=88.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      +..++.++.+|.++.+|+.+|+.+......  .. ..+..  .+. .++.++.+|.|+.+|..+++.....-........
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  329 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SV-NDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT  329 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCC--Cc-cCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence            566777888999999999999876554321  11 11222  234 5777889999999999887632211110111122


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec-CCCeE-EEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFS-SLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h-~~~It-sLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      ....  .+.+|+.++.||.|+++|..+++.+..... ...+. ...+  .+..|++++.||.|+.+++
T Consensus       330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            2222  356788899999999999999998776643 22232 2222  2458889999999988764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.07  E-value=0.00056  Score=77.85  Aligned_cols=165  Identities=13%  Similarity=0.172  Sum_probs=114.2

Q ss_pred             eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEE
Q 008356           29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--KLY  106 (568)
Q Consensus        29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG--tV~  106 (568)
                      .+.|.. +....+|++|+-..+ .|+.|...|.|++|++.++. .......|...|+-+.=+.+|..+++.+.-.  -..
T Consensus      1094 w~~frd-~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRD-ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             chhhhc-cccceeeEEeecCCc-eEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchHH
Confidence            344554 557789999998887 69999999999999998876 3556788999999999888888877765444  467


Q ss_pred             EEECCC-CceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEE
Q 008356          107 TYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       107 IWDlrt-~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~-~h~~~VtsLafspdg~~Las  184 (568)
                      +|++.. +.+.+.+   ....++.|+..-..-+.|+....+.|||+++...+...+... +....-+++.|+|+...++.
T Consensus      1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            999865 3444444   345678888766666677777889999999986544433311 12223366788886443322


Q ss_pred             eccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          185 ETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                                     ||  .+||+|.......
T Consensus      1248 ---------------dG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1248 ---------------DG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred             ---------------Cc--eeeeeccHHHHhh
Confidence                           22  4799987544333

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.06  E-value=0.00017  Score=79.63  Aligned_cols=158  Identities=15%  Similarity=0.189  Sum_probs=110.9

Q ss_pred             CcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEEC
Q 008356           38 QVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSS-DDKIIASVG----LDKKLYTYDP  110 (568)
Q Consensus        38 ~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~H~~~VtslafsP-dg~~LaSgs----~DGtV~IWDl  110 (568)
                      ..+.|+++..+.+ -+++.|..+|.|-+-.++...-. .....+|..++++++|++ |.++|+.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4567788776544 57889999999999988654322 455678889999999999 777787773    4557999999


Q ss_pred             CCC--ceee--Ee--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEE
Q 008356          111 GSR--RPSS--CI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFI  183 (568)
Q Consensus       111 rt~--~~v~--~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~La  183 (568)
                      .++  .+..  .+  .......+++|..+.+.+++|...+.|+++|+|........+    ....|..+...| .+.|+ 
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~nY~-  211 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSPNYF-  211 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCCCce-
Confidence            876  2221  11  234456689999889999999999999999999542211222    233466677777 33333 


Q ss_pred             EeccCCCCeEEEEecCCCcEEcCC-CCCCC
Q 008356          184 DETTCKAETALLGGAVGDSILMPD-PLPSV  212 (568)
Q Consensus       184 s~s~ssd~~~Lls~s~Dg~V~VWD-lr~~~  212 (568)
                                  +...|+.|.+|| .+++.
T Consensus       212 ------------cs~~dg~iAiwD~~rnie  229 (783)
T KOG1008|consen  212 ------------CSNSDGDIAIWDTYRNIE  229 (783)
T ss_pred             ------------eccccCceeeccchhhhc
Confidence                        223499999999 66554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.002  Score=68.86  Aligned_cols=159  Identities=12%  Similarity=0.133  Sum_probs=113.6

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--CCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS  112 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt  112 (568)
                      |.+.|+.+.... . .++.+++.||.++.|--..  +...+..+..|...|.+++.+-++.++.+++. |..++++|+++
T Consensus         8 hrd~i~hv~~tk-a-~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK-A-KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh-h-heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            667777654443 2 3899999999999998643  33345667788899999999999999999887 99999999998


Q ss_pred             CceeeEeecCCCeEEEEEecCCC----EEEEE-EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          113 RRPSSCITYEAPFSSLAFIDDDW----ILTAG-TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       113 ~~~v~~~~h~~~ItsLafsPdg~----~LasG-s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      -..+..+........+.|.....    .|++. -.++.+.|+|-+...++...... -|..+|.++.+.+.+..+     
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-lH~sPV~~i~y~qa~Ds~-----  159 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-LHFSPVKKIRYNQAGDSA-----  159 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc-cccCceEEEEeeccccce-----
Confidence            77665555444444444544322    44443 46789999999887654444432 589999999999865444     


Q ss_pred             CCCCeEEEEecCCCcEEcCCCC
Q 008356          188 CKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       188 ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                             ++....|.|..|...
T Consensus       160 -------vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen  160 -------VSIDISGMVEYWSAE  174 (558)
T ss_pred             -------eeccccceeEeecCC
Confidence                   444456788888765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.05  E-value=0.019  Score=66.89  Aligned_cols=129  Identities=17%  Similarity=0.204  Sum_probs=88.4

Q ss_pred             EEEE-EeCCCeEEEEECCCCCceeEEeccCCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--eeeE----
Q 008356           52 LLVT-AGDDGTLHLWDTTGRSPKVSWLKQHSAP-TAGISFSS-----DDKIIASVGLDKKLYTYDPGSRR--PSSC----  118 (568)
Q Consensus        52 lLaT-gs~DGtV~VWDl~t~~~~v~~l~~H~~~-VtslafsP-----dg~~LaSgs~DGtV~IWDlrt~~--~v~~----  118 (568)
                      +|+- ......|+-.|+..++ .+..+..|... |..++=..     .....+.|-.+..|..||.|-..  ++..    
T Consensus       495 mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             eEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            4443 3456789999999888 46667766643 55543221     23455677788889999998642  2321    


Q ss_pred             eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          119 ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       119 ~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +.....+.|++-..+| +||+|+.+|.|++||--+ .+....+.  +-..+|..|+.+.||+|+++.
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp--~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALP--GLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCC--CCCCCeeEEEecCCCcEEEEe
Confidence            1244568888877766 789999999999999543 33333344  557999999999999997654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.02  E-value=0.0052  Score=68.99  Aligned_cols=121  Identities=13%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356           32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG  111 (568)
Q Consensus        32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr  111 (568)
                      +.+.+...|.--+++..++ +++.|+.-|.|++|+-.++........+-...+..+..+++..+++.|+..|.|.++-+.
T Consensus        28 ~~~~~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   28 QPGFFPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             ccccCcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence            3333444444445566666 899999999999999887763333333344556667778888999999999999999887


Q ss_pred             CCceeeE--e-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356          112 SRRPSSC--I-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       112 t~~~v~~--~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ...+-..  +     .|...|++++|++++..|++|...|+|.+-.+..
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            6433211  1     2678899999999999999999999999988876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0029  Score=70.22  Aligned_cols=91  Identities=12%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 008356           39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPSS  117 (568)
Q Consensus        39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt-slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~  117 (568)
                      .+.-+.|+|.-+ ++|.+..+|.|.++.+....  +..+..|...++ +++|.|||+.|+.|-.||+|++.|++++..+.
T Consensus        22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR--lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR--LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcCccc-hhheeccCCcEEEEEeccce--eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            455689999887 99999999999999998443  666676777777 99999999999999999999999999988776


Q ss_pred             E--eecCCCeEEEEEec
Q 008356          118 C--ITYEAPFSSLAFID  132 (568)
Q Consensus       118 ~--~~h~~~ItsLafsP  132 (568)
                      .  +.....|.++-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            6  45667788888863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0027  Score=70.47  Aligned_cols=87  Identities=24%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |||.-.+||.+..+|.|.++.+. .+++..+.-+.....++++|.|||+ +|+.|-.||+|++.|+..+.........-.
T Consensus        28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~~~~s~e  105 (665)
T KOG4640|consen   28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVSFLFSVE  105 (665)
T ss_pred             EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceeccccccc
Confidence            89999999999999999999987 7888888764555556999999998 999999999999999988775444444556


Q ss_pred             CCeEEEEEc
Q 008356           82 APTAGISFS   90 (568)
Q Consensus        82 ~~Vtslafs   90 (568)
                      ..|.++-|.
T Consensus       106 ~~is~~~w~  114 (665)
T KOG4640|consen  106 TDISKGIWD  114 (665)
T ss_pred             cchheeecc
Confidence            678888886

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.88  E-value=0.34  Score=49.08  Aligned_cols=143  Identities=19%  Similarity=0.217  Sum_probs=90.0

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-------
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW-------   76 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~-------   76 (568)
                      ..++.|+.|..+| |+++++........+.  +...|..+...++-+ +|++- .|+.|+++++..-......       
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccccccccc
Confidence            3578899999988 9999983333333332  222388888888776 34333 3499999998654321100       


Q ss_pred             ------eccCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----ceeeEeecCCCeEEEEEecCCCEEEEEEcC
Q 008356           77 ------LKQHSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSR-----RPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        77 ------l~~H~~~Vtsla--fsPdg~~LaSgs~DGtV~IWDlrt~-----~~v~~~~h~~~ItsLafsPdg~~LasGs~D  143 (568)
                            .......+..++  -...+...+.+...++|.+|.....     +..+.+.....+..++|.  ++.|++|..+
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence                  111223344444  1124444444555558888877552     455667788999999999  5678888754


Q ss_pred             CeEEEEECCCC
Q 008356          144 GRVVFYDIRGK  154 (568)
Q Consensus       144 G~V~VWDlrt~  154 (568)
                       ...+.|+.+.
T Consensus       158 -~f~~idl~~~  167 (275)
T PF00780_consen  158 -GFYLIDLNTG  167 (275)
T ss_pred             -ceEEEecCCC
Confidence             4888899865

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.83  E-value=0.49  Score=51.05  Aligned_cols=150  Identities=16%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             ccCCCCEEEEE-ECCC----cEEEEECCCCceeEEe-eCCCCCcEEEEEEccCCCeEEEEEeCC----------CeEEEE
Q 008356            2 YNCKDEHLASI-SLSG----DLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDD----------GTLHLW   65 (568)
Q Consensus         2 fSpdG~~LasG-s~DG----~V~VWDl~tg~~v~~l-~~~h~~~Vs~Lafspdg~~lLaTgs~D----------GtV~VW   65 (568)
                      ++|||++||.+ +..|    .|+++|+++|+.+... ..   .....+.|.++++.++++...+          ..|+.|
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            68999998865 3444    5999999999876533 22   1122389999988666665433          237888


Q ss_pred             ECCCCCce-eEEeccCCCC--eEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC-----ceeeEeecCCCeE-EEEEec
Q 008356           66 DTTGRSPK-VSWLKQHSAP--TAGISFSSDDKIIASVGL---D-KKLYTYDPGSR-----RPSSCITYEAPFS-SLAFID  132 (568)
Q Consensus        66 Dl~t~~~~-v~~l~~H~~~--VtslafsPdg~~LaSgs~---D-GtV~IWDlrt~-----~~v~~~~h~~~It-sLafsP  132 (568)
                      ++.+.... ...+......  ...+..++++++|+....   + ..|++.|+..+     ...........+. .+... 
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-  286 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-  286 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence            88665433 2333333332  567888999998775432   3 45888899875     3333334444443 34444 


Q ss_pred             CCCEEEEE---EcCCeEEEEECCCCC
Q 008356          133 DDWILTAG---TSNGRVVFYDIRGKP  155 (568)
Q Consensus       133 dg~~LasG---s~DG~V~VWDlrt~~  155 (568)
                      .+.+++..   ..++.|...++....
T Consensus       287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  287 GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             CCEEEEeeCCCCCCcEEEEecccccc
Confidence            33333333   234678888887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.80  E-value=0.09  Score=53.33  Aligned_cols=99  Identities=11%  Similarity=0.059  Sum_probs=63.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      |++++.|...|.+++.+..+|.....+.....-.++ ....+++. ++..|+.|+..+..|..+..+.. ..+-...-..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~g-lIycgshd~~~yalD~~~~~cVy-kskcgG~~f~  139 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVY-KSKCGGGTFV  139 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCc-eEEEecCCCcEEEecccccceEE-ecccCCceec
Confidence            678899999999999999999877666643333333 24566676 89999999999999998776432 2332222233


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEE
Q 008356           86 GISFSSDDKIIASVGLDKKLYT  107 (568)
Q Consensus        86 slafsPdg~~LaSgs~DGtV~I  107 (568)
                      +-+..+-...|+.+...|.|.-
T Consensus       140 sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen  140 SPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             cceecCCCceEEEEeccceEEE
Confidence            3344552333333444444433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.16  Score=54.86  Aligned_cols=151  Identities=16%  Similarity=0.141  Sum_probs=109.6

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-
Q 008356            1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW-   76 (568)
Q Consensus         1 afSpdG~~LasGs~---DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~-   76 (568)
                      +|+++++.+.++..   ++.+.+.|..+++......... .. ..+++.|++..++++-..++.|.+.|...... .+. 
T Consensus       122 ~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~  198 (381)
T COG3391         122 AVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGS  198 (381)
T ss_pred             EECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-eccc
Confidence            36788988877765   6889999998888887765433 23 66899999996666666899999999766652 110 


Q ss_pred             ---eccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeE-eecCC-CeEEEEEecCCCEEEEEEcC-CeEE
Q 008356           77 ---LKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSC-ITYEA-PFSSLAFIDDDWILTAGTSN-GRVV  147 (568)
Q Consensus        77 ---l~~H~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~-~~h~~-~ItsLafsPdg~~LasGs~D-G~V~  147 (568)
                         ...-......+.+.+++.++......   +.+...|..++..... ..-.. ....+...|+|.++.+.... +.|.
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~  278 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS  278 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence               11222345678999999876665544   5899999998877665 22222 56778999999999888554 8899


Q ss_pred             EEECCCC
Q 008356          148 FYDIRGK  154 (568)
Q Consensus       148 VWDlrt~  154 (568)
                      +-|..+.
T Consensus       279 vid~~~~  285 (381)
T COG3391         279 VIDGATD  285 (381)
T ss_pred             EEeCCCC
Confidence            9998876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.14  Score=59.09  Aligned_cols=148  Identities=19%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             CEEEEEECCC-----cEEEEECCCC------cee---EEe--eCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-
Q 008356            7 EHLASISLSG-----DLILHNLASG------AKA---AEL--KDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-   68 (568)
Q Consensus         7 ~~LasGs~DG-----~V~VWDl~tg------~~v---~~l--~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~-   68 (568)
                      ++|++.+.|+     .|+||+++.-      .++   +.+  +.+ ...++.+++.+.+-. .+|+|-.||.|.++.-+ 
T Consensus        78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen   78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc
Confidence            5677766654     5999998632      233   111  222 345778889988865 89999999999998642 


Q ss_pred             --CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCC
Q 008356           69 --GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus        69 --t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG  144 (568)
                        ..............+|+.+.+..++..++-+.....|.+|.+....+... + .++...+|..+++...-+++++ +.
T Consensus       157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e  235 (933)
T KOG2114|consen  157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE  235 (933)
T ss_pred             hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence              22222444445578999999998887744444456699999985443333 3 5777899999998655344444 35


Q ss_pred             eEEEEECCCCCC
Q 008356          145 RVVFYDIRGKPQ  156 (568)
Q Consensus       145 ~V~VWDlrt~~~  156 (568)
                      .|.+||......
T Consensus       236 ~l~fY~sd~~~~  247 (933)
T KOG2114|consen  236 FLYFYDSDGRGP  247 (933)
T ss_pred             eEEEEcCCCcce
Confidence            799999987643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.77  E-value=0.093  Score=46.74  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             eEEEEEcC-CC---CEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           84 TAGISFSS-DD---KIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        84 VtslafsP-dg---~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |+++++.. ++   +.|++|+.|..|++|+=  .+.+..+.....|.+++-... ..++.+..+|+|-+|+-...  ..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee
Confidence            56677655 22   68999999999999974  467778888888999888876 67899999999999986443  222


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      .-    ....+.++++..-        ..++...|+.+-.+|.|-
T Consensus        77 iK----SK~~~~~~~~~D~--------~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IK----SKNQVTSMAFYDI--------NGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ec----cCCCeEEEEEEcC--------CCCCceEEEEEecCCeEE
Confidence            21    2334666665442        122334455555566654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.74  E-value=0.096  Score=46.63  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC
Q 008356           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE  122 (568)
Q Consensus        43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~  122 (568)
                      +.|..+|.+-|++|++|..|++|+-..   .+..+.. ...|+++.-... ..++.+-.+|+|-+|+-  .+.+..++.+
T Consensus         8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK   80 (111)
T PF14783_consen    8 FDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSK   80 (111)
T ss_pred             EecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccC
Confidence            345566777899999999999998653   2444443 345777776654 67999999999999975  3344555556


Q ss_pred             CCeEEEEEecC---C-CEEEEEEcCCeEEE
Q 008356          123 APFSSLAFIDD---D-WILTAGTSNGRVVF  148 (568)
Q Consensus       123 ~~ItsLafsPd---g-~~LasGs~DG~V~V  148 (568)
                      ..+.++++..-   | .-|++|-.+|.|-+
T Consensus        81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            66777777653   2 36888888888753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.60  E-value=0.25  Score=51.61  Aligned_cols=162  Identities=11%  Similarity=0.073  Sum_probs=95.2

Q ss_pred             CCEEEEEEC----------CCcEEEEECCCC-----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            6 DEHLASISL----------SGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         6 G~~LasGs~----------DG~V~VWDl~tg-----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      ..+|++|..          .|.|.++++...     +..........+.|.+|+-.  +. .|+++ .++.|++|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~-~g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVA-VGNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEE-ETTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEe-ecCEEEEEEccCc
Confidence            356776643          288999999873     22222222246778877765  33 33333 3488999999777


Q ss_pred             C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeEe-e--cCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           71 S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCI-T--YEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        71 ~-~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~~~v~~~-~--h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      + ............+.++...  +++|+.|...+.|.++..+. .+.+..+ .  ....+.++.|-.+++.++++..+|.
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence            6 3233333333466666665  66899998878777764433 2223333 2  3455888888866679999999999


Q ss_pred             EEEEECCCC------CC-ceEEEeecCCCCCeeEE
Q 008356          146 VVFYDIRGK------PQ-PLTVLRACSSSEAVSSL  173 (568)
Q Consensus       146 V~VWDlrt~------~~-~v~~l~~~~h~~~VtsL  173 (568)
                      |.++.....      .. .+.....+.....|+++
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~  230 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF  230 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence            999987631      11 22333333345667777

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.51  E-value=0.17  Score=56.38  Aligned_cols=147  Identities=12%  Similarity=0.071  Sum_probs=89.7

Q ss_pred             CCCEEEEEECCC------------------cEEEEECCCCceeEEeeCCCCC----------cEEEEE-EccCCCeEEEE
Q 008356            5 KDEHLASISLSG------------------DLILHNLASGAKAAELKDPNEQ----------VLRVLD-YSRNSRHLLVT   55 (568)
Q Consensus         5 dG~~LasGs~DG------------------~V~VWDl~tg~~v~~l~~~h~~----------~Vs~La-fspdg~~lLaT   55 (568)
                      .+.+++.+..++                  .|.-+|+++|+.+-.++..+..          .+..+. ..-....+++.
T Consensus       227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~  306 (488)
T cd00216         227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH  306 (488)
T ss_pred             CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence            456777776555                  7999999999988776532211          111111 11111236788


Q ss_pred             EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE------------------eCCCeEEEEECCCCceee
Q 008356           56 AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV------------------GLDKKLYTYDPGSRRPSS  117 (568)
Q Consensus        56 gs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSg------------------s~DGtV~IWDlrt~~~v~  117 (568)
                      ++.+|.++..|..+++.....-..    ...+...|  ..++.+                  ..+|.|..+|+.+++.+.
T Consensus       307 g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W  380 (488)
T cd00216         307 APKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW  380 (488)
T ss_pred             ECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence            889999999999998843222111    11122333  333322                  246789999999999887


Q ss_pred             EeecC---------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356          118 CITYE---------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus       118 ~~~h~---------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      .....         .+...-...-.+..|++++.||.|+.+|.++++..
T Consensus       381 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         381 EKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             EeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence            66433         11111111124678899999999999999998543

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.50  E-value=0.2  Score=51.03  Aligned_cols=143  Identities=16%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--  114 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--  114 (568)
                      ..++.|.|+|+.+.++++....+.|..++.++.-  ++.+. ...+..-.|++..++.++++--.++.+.++++....  
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3489999999988788888889999999976433  33332 223568889998888777777679999999884321  


Q ss_pred             --e--eeEe------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CCCceEEEee------cCCCCCeeEEEEc
Q 008356          115 --P--SSCI------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRA------CSSSEAVSSLCWQ  176 (568)
Q Consensus       115 --~--v~~~------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt--~~~~v~~l~~------~~h~~~VtsLafs  176 (568)
                        .  +..+      .+...+-.++|++.++.|+++-+..-..||.++.  ..........      ......+.+++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence              1  1112      1445689999999988888888777777777765  2111221111      1133457889999


Q ss_pred             cCCCeE
Q 008356          177 RAKPVF  182 (568)
Q Consensus       177 pdg~~L  182 (568)
                      |....+
T Consensus       180 p~t~~l  185 (248)
T PF06977_consen  180 PRTGHL  185 (248)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            864433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.44  E-value=0.18  Score=51.11  Aligned_cols=122  Identities=19%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--------------
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--------------  117 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~--------------  117 (568)
                      .|+.|.++| |++|++..........  +...|..+...++-+.+++-+ |+.|+++|+..-....              
T Consensus         9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~   84 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP   84 (275)
T ss_pred             EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence            688889999 9999993332222222  223399999999777776665 5999999987643332              


Q ss_pred             -EeecCCCeEEEE--EecCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEcc
Q 008356          118 -CITYEAPFSSLA--FIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       118 -~~~h~~~ItsLa--fsPdg~~LasGs~DG~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafsp  177 (568)
                       .+.....+...+  -...+...++.....+|.+|......... ..++...-...+..++|..
T Consensus        85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~  148 (275)
T PF00780_consen   85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG  148 (275)
T ss_pred             ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence             122233344444  11234444444445689998887642222 2333334557889999984

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=96.40  E-value=0.0091  Score=39.01  Aligned_cols=36  Identities=33%  Similarity=0.539  Sum_probs=31.8

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD  109 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD  109 (568)
                      ...+..|...|+++.|.+++..+++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445567888999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.40  E-value=0.13  Score=52.09  Aligned_cols=113  Identities=11%  Similarity=0.047  Sum_probs=85.9

Q ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC
Q 008356           44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA  123 (568)
Q Consensus        44 afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~  123 (568)
                      ...++.+.+++.|+..+.+.--|..++.  +.+...-..+|.+-+.- -+++++.|...|.+++.+..+|.....+...+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~--~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGN--LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCc--EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            3445666789999999999999998887  33434444555544433 47789999999999999999998888776555


Q ss_pred             CeE-EEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356          124 PFS-SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus       124 ~It-sLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      .|. .....+++..+.+|+.|+..+..|.++.....+
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            554 344567899999999999999999998754333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=0.12  Score=56.79  Aligned_cols=132  Identities=17%  Similarity=0.199  Sum_probs=90.3

Q ss_pred             CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCce--eeE
Q 008356           48 NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGSRRP--SSC  118 (568)
Q Consensus        48 dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-------~LaSgs~DGtV~IWDlrt~~~--v~~  118 (568)
                      +..-+|..+.....|+-.|+..++ .+..+.-|.. |+-+.+.|+.+       .-+.|-.|..|.-||.|-...  +..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            333345566666778888998887 4666676666 88888887543       223455678899999985322  211


Q ss_pred             e-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          119 I-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       119 ~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .     .......|.+-..+| ++++|+.+|.|++||- .+.+....+.  +...+|..|...-+|++|++.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP--gLG~~I~hVdvtadGKwil~T  489 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP--GLGDAIKHVDVTADGKWILAT  489 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc--ccCCceeeEEeeccCcEEEEe
Confidence            1     123456666666555 8899999999999997 3333334444  667899999999999997654

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.29  E-value=0.22  Score=56.89  Aligned_cols=163  Identities=15%  Similarity=0.178  Sum_probs=90.1

Q ss_pred             CccCCCCEEEEEE------CCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC------------C
Q 008356            1 MYNCKDEHLASIS------LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------------G   60 (568)
Q Consensus         1 afSpdG~~LasGs------~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D------------G   60 (568)
                      +++|+|+.++..-      .|.  .|.+++. .+.. ..+..  ......-.|+|+|+ .+++..+.            +
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~--g~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~g  430 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE--GHSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATG  430 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec--CCCCCCceECCCCC-ceEEEecCcceEEEeccCCCc
Confidence            3689999887665      243  4555554 2333 33322  12366689999977 34444322            2


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EECCCCceeeE-----e--ecCCCeEEEEE
Q 008356           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT---YDPGSRRPSSC-----I--TYEAPFSSLAF  130 (568)
Q Consensus        61 tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~I---WDlrt~~~v~~-----~--~h~~~ItsLaf  130 (568)
                      .+.+.+++.++...    .....|..+.|+|||..|+... ++.|++   -....+. ...     +  .....+..+.|
T Consensus       431 ql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        431 QLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             eEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceE
Confidence            34444444443211    3356799999999999988766 477777   4433443 222     2  13334688999


Q ss_pred             ecCCCEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          131 IDDDWILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       131 sPdg~~LasGs~DG~V~VW--Dlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ..++.++ ++..++...+|  ++.....  ..+........+..|+-.+
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCccc--cccCCCCccCceEEEecCC
Confidence            9998854 55554444444  4444321  1112112345566666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.21  E-value=0.11  Score=57.29  Aligned_cols=136  Identities=10%  Similarity=0.127  Sum_probs=79.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------CceeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----------SPKVS   75 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~----------~~~v~   75 (568)
                      |.+|+..+.+ .|.+||+++++.++.+..   ..|..+.|+++++ +++..+. ..+.|++.+..          +....
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~  190 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFE  190 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceE
Confidence            6666666544 899999999999999984   2478899999998 5655554 46677665433          11234


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      .+......|.+.+|..+  .++..... .|++  +..|+.-.....+.++.=+.+.+..+.+.....|+.|..+.+.
T Consensus       191 ~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  191 LIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            44444677999999855  55555555 6776  4455543333446677788888877888888888888888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.19  E-value=0.8  Score=49.39  Aligned_cols=195  Identities=13%  Similarity=0.099  Sum_probs=113.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEc----cCCCe--EEEEEeCC---CeEEEEECCCCCcee
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS----RNSRH--LLVTAGDD---GTLHLWDTTGRSPKV   74 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafs----pdg~~--lLaTgs~D---GtV~VWDl~t~~~~v   74 (568)
                      |...+|+...+++-+.+||+ .|+.+..+..   +.++.+...    -.++.  ++++..++   ..|++|.++.....+
T Consensus        66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEET-TS-EEEEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             cccceEEEEeCCCCEEEEcC-CCcEEEeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            34457777788899999998 6777776653   223333321    13332  23333333   479999886433223


Q ss_pred             EEecc-------CCCCeEEEEEc--C-CCC-EEEEEeCCCeEEEEECC---CC----ceeeEeecCCCeEEEEEecCCCE
Q 008356           75 SWLKQ-------HSAPTAGISFS--S-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI  136 (568)
Q Consensus        75 ~~l~~-------H~~~Vtslafs--P-dg~-~LaSgs~DGtV~IWDlr---t~----~~v~~~~h~~~ItsLafsPdg~~  136 (568)
                      ..+..       ....++.+|+-  + ++. +.+....+|.+..|-+.   .+    +.++.+.....+..|+......+
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR  221 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence            33321       12347778773  4 454 56667788988877764   33    35677778889999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCCCc-eEEEee---cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          137 LTAGTSNGRVVFYDIRGKPQP-LTVLRA---CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~~~-v~~l~~---~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      |+.+-++--|.-|+.+-.... ...+..   .....-|-.|++-..        ....+.++++.-.++...|||...
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--------~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--------SDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---------CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--------CCCCeEEEEEcCCCCeEEEEecCC
Confidence            999999998998988743211 122211   123345666666442        122345666666788999999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00320 WD40 WD40 repeats

Probab=96.17  E-value=0.016  Score=37.74  Aligned_cols=38  Identities=32%  Similarity=0.604  Sum_probs=30.8

Q ss_pred             ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356           27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (568)
Q Consensus        27 ~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD   66 (568)
                      +.+..+.. +...|.++.|.+++. ++++++.|+.+++||
T Consensus         3 ~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG-HTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe-cCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            34455554 667889999999886 899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.12  E-value=0.39  Score=54.90  Aligned_cols=135  Identities=17%  Similarity=0.159  Sum_probs=79.9

Q ss_pred             CcEEEEEEccCCCeEEEEEe-----CCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------
Q 008356           38 QVLRVLDYSRNSRHLLVTAG-----DDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD--------  102 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs-----~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D--------  102 (568)
                      ..+...+++++|+.++++..     .|.  .|.+++.....  .....+  .....-.|+|+++.|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            35677899999996655552     243  45555653322  222232  237888999998877776533        


Q ss_pred             ----CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE---EECCCCCCceEE-----EeecCCCCCe
Q 008356          103 ----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF---YDIRGKPQPLTV-----LRACSSSEAV  170 (568)
Q Consensus       103 ----GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V---WDlrt~~~~v~~-----l~~~~h~~~V  170 (568)
                          +.+.+.++..+....  ...+.|..+.|+|||..++... +++|+|   -....+.  ..+     +. ..-...+
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~-~~l~~~~  499 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVG-PGLGDTA  499 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEee-cccCCcc
Confidence                233333444333322  3356799999999999988876 477777   3323332  111     11 1223346


Q ss_pred             eEEEEccCCCeE
Q 008356          171 SSLCWQRAKPVF  182 (568)
Q Consensus       171 tsLafspdg~~L  182 (568)
                      ..+.|..++.++
T Consensus       500 ~~l~W~~~~~L~  511 (591)
T PRK13616        500 VSLDWRTGDSLV  511 (591)
T ss_pred             ccceEecCCEEE
Confidence            788898876543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.01  E-value=0.47  Score=50.26  Aligned_cols=195  Identities=12%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             ccCCCCEEEEEEC--CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeE---
Q 008356            2 YNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVS---   75 (568)
Q Consensus         2 fSpdG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~~~v~---   75 (568)
                      ++.||+++++...  -..|.|-|++.++.+.++..  .+ +.  -.-|.++.-|.+-|.||.+.-..++. ++...+   
T Consensus       102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG-C~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG-CW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS-EE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             EccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC-EE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence            4567777666533  34677788888888777764  22 22  12233333588889999999998863 332211   


Q ss_pred             EeccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE--ee-----------cCCCeEEEEEecCCCEEEEEE
Q 008356           76 WLKQHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--IT-----------YEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        76 ~l~~H~~~V-tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~--~~-----------h~~~ItsLafsPdg~~LasGs  141 (568)
                      .+..-..++ ..-++...+..++-.+.+|.|+-.|+........  +.           ..+.-.-+++++..+.|++-.
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            111122222 2334445556666688999999999887653221  11           112344678887666655533


Q ss_pred             cCC----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe-cCCCcEEcCCCCC
Q 008356          142 SNG----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG-AVGDSILMPDPLP  210 (568)
Q Consensus       142 ~DG----------~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~-s~Dg~V~VWDlr~  210 (568)
                      ..|          .|.+||+.+.++ +..+.   -..++.+|..+.+           +..+|++. ..++.|.+||...
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~---l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKR-VARIP---LEHPIDSIAVSQD-----------DKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEE-EEEEE---EEEEESEEEEESS-----------SS-EEEEEETTTTEEEEEETTT
T ss_pred             cCCCCCCccCCceEEEEEECCCCeE-EEEEe---CCCccceEEEccC-----------CCcEEEEEcCCCCeEEEEeCcC
Confidence            221          388888888743 33333   2345778888775           55566554 4478999999987


Q ss_pred             CCcccc
Q 008356          211 SVTTSS  216 (568)
Q Consensus       211 ~~~~~s  216 (568)
                      .....+
T Consensus       322 Gk~~~~  327 (342)
T PF06433_consen  322 GKLVRS  327 (342)
T ss_dssp             --EEEE
T ss_pred             CcEEee
Confidence            655443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.88  E-value=0.67  Score=49.93  Aligned_cols=182  Identities=13%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             CccCCCCEEEEEEC-CC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISL-SG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~-DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|..||+.|+.++. ||  .+++.|+++++..+.-.+..... ....++++++.+++ ...+..|+-.|+.+.+. ....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~-~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-FGGFLSPDDRALYY-VKNGRSLRRVDLDTLEE-RVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-TT-EE-TTSSEEEE-EETTTEEEEEETTT--E-EEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc-cceEEecCCCeEEE-EECCCeEEEEECCcCcE-EEEE
Confidence            57889987766654 44  57778888887655444322222 23456788774444 44557888889988773 2333


Q ss_pred             ccCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEECCCCceeeEeecCCCeEEEEEecC
Q 008356           78 KQHSAPTAGISFS--SDDKIIASVGL----------------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD  133 (568)
Q Consensus        78 ~~H~~~Vtslafs--Pdg~~LaSgs~----------------------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd  133 (568)
                      ......+-...|.  .++..++-.-.                      ...|...|+.+++...++.....+..+.|+|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            3444445445664  36666543311                      12577789999998888888889999999995


Q ss_pred             -CCEEEEEEc---CCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          134 -DWILTAGTS---NGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       134 -g~~LasGs~---DG~-V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                       ...|+.|.+   +.. -+||-++......+.+........+..=-|.++|..|..-
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence             455555554   221 3566555433223333322233445566789998877553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.87  E-value=0.7  Score=51.49  Aligned_cols=149  Identities=16%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCC-----c-E-EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-----V-L-RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~-----~-V-s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +..++++..++.|+.+|..+|+.+-.+......     . + ..+... ++. .++.++.++.|+.+|.++++...+ ..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~W~-~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQVWK-FG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEeee-ec
Confidence            456777888999999999999987766532210     0 0 011111 213 577888999999999998874322 22


Q ss_pred             cCCC--CeEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCceeeEeecCCC---------------------
Q 008356           79 QHSA--PTAGISFSS--DDKIIASVG---------LDKKLYTYDPGSRRPSSCITYEAP---------------------  124 (568)
Q Consensus        79 ~H~~--~VtslafsP--dg~~LaSgs---------~DGtV~IWDlrt~~~v~~~~h~~~---------------------  124 (568)
                      ....  .-..+.-.|  .+.+++.++         .++.|..+|..+++.+..+.....                     
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            1111  001111122  234455543         468899999999998876643110                     


Q ss_pred             e-EEEEEecCCCEEEEEEcCC------------------eEEEEECCCCCCc
Q 008356          125 F-SSLAFIDDDWILTAGTSNG------------------RVVFYDIRGKPQP  157 (568)
Q Consensus       125 I-tsLafsPdg~~LasGs~DG------------------~V~VWDlrt~~~~  157 (568)
                      + ...++.+.+..+++++.++                  .|.-+|.++++..
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            1 1244555567888887665                  6888898888543

The alignment model contains an 8-bladed beta-propeller.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.83  E-value=1.2  Score=45.75  Aligned_cols=176  Identities=14%  Similarity=0.125  Sum_probs=101.1

Q ss_pred             eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008356           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL  105 (568)
Q Consensus        28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV  105 (568)
                      .+.++..........+.|..++. ++-+.+.-|  .|+.+|+.+++......-...----.++.. +++...-.-.++..
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence            34455532355677888877775 777777777  599999998874322222222222334444 34444555678899


Q ss_pred             EEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeE
Q 008356          106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVF  182 (568)
Q Consensus       106 ~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~~L  182 (568)
                      .+||..+-+.+..+...+.=..++  .++..|+.......|+++|..+.. ....+.......   .++.+.|. +|...
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            999999999998888777777777  457778887778899999998763 233333222222   35556665 44444


Q ss_pred             EEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          183 IDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       183 as~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.. +..+..+.+....+..+.++|+..
T Consensus       189 ANV-W~td~I~~Idp~tG~V~~~iDls~  215 (264)
T PF05096_consen  189 ANV-WQTDRIVRIDPETGKVVGWIDLSG  215 (264)
T ss_dssp             EEE-TTSSEEEEEETTT-BEEEEEE-HH
T ss_pred             EEe-CCCCeEEEEeCCCCeEEEEEEhhH
Confidence            444 444555555555445555556543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.73  E-value=1.6  Score=45.96  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=93.0

Q ss_pred             EEEEECCCCceeEEeeC----CCCCcEEEEEEccCCCeEEEEEeC------C---CeEEEEECCCCCceeEEeccCCCCe
Q 008356           18 LILHNLASGAKAAELKD----PNEQVLRVLDYSRNSRHLLVTAGD------D---GTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus        18 V~VWDl~tg~~v~~l~~----~h~~~Vs~Lafspdg~~lLaTgs~------D---GtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      +++++.+++..+..+..    ......+++...|+|. +.++...      +   ..-.||.++.....++.+..+-..-
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~  165 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP  165 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence            56666665555332221    1224456788899987 3332222      1   1123454442222355666667778


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEECCC--C----ceeeEe--ecCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCC
Q 008356           85 AGISFSSDDKIIASVGL-DKKLYTYDPGS--R----RPSSCI--TYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGK  154 (568)
Q Consensus        85 tslafsPdg~~LaSgs~-DGtV~IWDlrt--~----~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG-~V~VWDlrt~  154 (568)
                      +.|+|+||++.++.+.. .+.|.-|++..  +    +....+  ...+..-.++...+|++.+++..+| .|.+|+.+ +
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            99999999988877764 47888887752  1    111111  2346677888888998886665555 89999999 3


Q ss_pred             CCceEEEeecCCCCCeeEEEEcc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                       +.+..+..  ....+++++|--
T Consensus       245 -~l~~~i~l--P~~~~t~~~FgG  264 (307)
T COG3386         245 -KLLGEIKL--PVKRPTNPAFGG  264 (307)
T ss_pred             -cEEEEEEC--CCCCCccceEeC
Confidence             34455542  236677777743

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.71  E-value=0.44  Score=51.78  Aligned_cols=180  Identities=14%  Similarity=0.168  Sum_probs=96.5

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEe--e-----CCCCCcEEEEEEcc-----CC--CeEEEEEeCCCeEEEEECC--
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAEL--K-----DPNEQVLRVLDYSR-----NS--RHLLVTAGDDGTLHLWDTT--   68 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l--~-----~~h~~~Vs~Lafsp-----dg--~~lLaTgs~DGtV~VWDl~--   68 (568)
                      |=.++|+|..+|.+.|.|++....+..-  .     ......++++.|.-     |+  .-++++|...|.+.+|.+.  
T Consensus        96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~  175 (395)
T PF08596_consen   96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS  175 (395)
T ss_dssp             BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred             CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence            3457899999999999999776655441  1     12345677888862     21  1368899999999999884  


Q ss_pred             CCC-ce---eEEeccCCCCeEEEE-EcCC-C-------------------CEEEEEeCCCeEEEEECCCCceeeEeecC-
Q 008356           69 GRS-PK---VSWLKQHSAPTAGIS-FSSD-D-------------------KIIASVGLDKKLYTYDPGSRRPSSCITYE-  122 (568)
Q Consensus        69 t~~-~~---v~~l~~H~~~Vtsla-fsPd-g-------------------~~LaSgs~DGtV~IWDlrt~~~v~~~~h~-  122 (568)
                      .+. ..   ......+.++|..+. ++.+ +                   ..++....+..++++..-+.+........ 
T Consensus       176 ~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~  255 (395)
T PF08596_consen  176 SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDP  255 (395)
T ss_dssp             GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-
T ss_pred             CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccc
Confidence            111 11   112234566666665 3221 0                   12344444677999999887765544311 


Q ss_pred             CCeEEEEEe-----cCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEe
Q 008356          123 APFSSLAFI-----DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       123 ~~ItsLafs-----Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~--~h~~~VtsLafspdg~~Las~  185 (568)
                      ..+..+++-     ..+..|++-..+|.|++|.+-.-+ .+..+...  .+...+....+.++|..++..
T Consensus       256 ~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk-ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  256 FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK-EIKSVSLPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             cccceEEEEeecccCCceEEEEEECCCcEEEEECCCch-HhhcccCCCccccccccccEECCCCCEEEEe
Confidence            233344552     357788889999999999998753 23333321  122335566778887766555

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.63  E-value=2.2  Score=48.22  Aligned_cols=201  Identities=9%  Similarity=-0.045  Sum_probs=110.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE----------EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR----------VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs----------~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      +..|++++.++.|+-+|..+|+.+-++.......+.          .+.+.  +. .++.++.|+.|..+|..+++....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEee
Confidence            457778888899999999999988776532111111          11222  22 467788899999999988874322


Q ss_pred             EeccCCCCeEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCceeeEeecC--C----------------------
Q 008356           76 WLKQHSAPTAGISFSS--DDKIIASVG------LDKKLYTYDPGSRRPSSCITYE--A----------------------  123 (568)
Q Consensus        76 ~l~~H~~~VtslafsP--dg~~LaSgs------~DGtV~IWDlrt~~~v~~~~h~--~----------------------  123 (568)
                      .-......-..+.-.|  .+..++.+.      .+|.|+.+|.++++.+..+...  .                      
T Consensus       146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            1111111001111122  233455443      2689999999999987665210  0                      


Q ss_pred             --------Ce-EEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 008356          124 --------PF-SSLAFIDDDWILTAGTSN-----G-----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       124 --------~I-tsLafsPdg~~LasGs~D-----G-----------~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspd  178 (568)
                              .+ ..+.+.+...+|+.+..+     +           .|.-.|+++++.. -.++...|...  .... +.
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~-W~~Q~~~~D~w--D~d~-~~  301 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK-WHYQTTPHDEW--DYDG-VN  301 (527)
T ss_pred             CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE-EeeeCCCCCCc--cccC-CC
Confidence                    01 134667766777776632     2           4666777777432 22232223222  1110 11


Q ss_pred             CCeEEEe-ccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          179 KPVFIDE-TTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       179 g~~Las~-s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ...|+.. .+......++.+..+|.+.+.|-+....
T Consensus       302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            2233332 1111225677888889999988766543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=95.63  E-value=0.42  Score=54.28  Aligned_cols=144  Identities=13%  Similarity=0.108  Sum_probs=71.3

Q ss_pred             CCCEEEEEECC------CcEEEEECCCCceeEEeeCCCCCc-EEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 008356            5 KDEHLASISLS------GDLILHNLASGAKAAELKDPNEQV-LRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP   72 (568)
Q Consensus         5 dG~~LasGs~D------G~V~VWDl~tg~~v~~l~~~h~~~-Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~~~   72 (568)
                      ++...++||.+      ..+..||+.+..-. .+..-.... -.+++ .-++. +.+.|+.++     .|..||..++. 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~-~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~-  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA-VIDDT-IYAIGGQNGTNVERTIECYTMGDDK-  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE-EECCE-EEEECCcCCCCCCceEEEEECCCCe-
Confidence            45556667653      34778887665421 121101111 11122 22344 778888764     48889987664 


Q ss_pred             eeEEeccCCCCeEEEE-EcCCCCEEEEEeCCC-----------------------eEEEEECCCCceeeEeec-CCCeEE
Q 008356           73 KVSWLKQHSAPTAGIS-FSSDDKIIASVGLDK-----------------------KLYTYDPGSRRPSSCITY-EAPFSS  127 (568)
Q Consensus        73 ~v~~l~~H~~~Vtsla-fsPdg~~LaSgs~DG-----------------------tV~IWDlrt~~~v~~~~h-~~~Its  127 (568)
                       ...+.....+..... ..-+++..+.||.++                       .|..||.++.+-...-.. ......
T Consensus       379 -W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~  457 (557)
T PHA02713        379 -WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP  457 (557)
T ss_pred             -EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence             222222111111111 112677777787652                       477888877643322111 111111


Q ss_pred             EEEecCCCEEEEEEcC------CeEEEEECCC
Q 008356          128 LAFIDDDWILTAGTSN------GRVVFYDIRG  153 (568)
Q Consensus       128 LafsPdg~~LasGs~D------G~V~VWDlrt  153 (568)
                      .+..-++++.++|+.+      ..|..||+++
T Consensus       458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence            1122246777777754      2467899887

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.61  E-value=1.9  Score=43.88  Aligned_cols=143  Identities=11%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCce
Q 008356           39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-PGSRRP  115 (568)
Q Consensus        39 ~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD-lrt~~~  115 (568)
                      .+...+++++++.+.+...  ....|+++......  ...+.  ...+....|.+++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            5677899999985555542  33445555544332  22222  23678889999987777766666666663 333332


Q ss_pred             ee-Ee--e-cCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCC-C-ceEE---Eee-cCCCCCeeEEEEccCCCeE
Q 008356          116 SS-CI--T-YEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKP-Q-PLTV---LRA-CSSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       116 v~-~~--~-h~~~ItsLafsPdg~~LasGs---~DG~V~VWDlrt~~-~-~v~~---l~~-~~h~~~VtsLafspdg~~L  182 (568)
                      .. .+  . ....|..++++|||..++...   .++.|.|--+.... . +...   +.. ......+..+.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            21 11  1 222899999999999988866   35777777553211 1 1111   111 1234678999999976655


Q ss_pred             EEe
Q 008356          183 IDE  185 (568)
Q Consensus       183 as~  185 (568)
                      +..
T Consensus       181 V~~  183 (253)
T PF10647_consen  181 VLG  183 (253)
T ss_pred             EEe
Confidence            444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.55  E-value=1.3  Score=47.76  Aligned_cols=113  Identities=19%  Similarity=0.250  Sum_probs=73.5

Q ss_pred             EEEEEEccCCCeEEEEEeCCCe----EEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------e
Q 008356           40 LRVLDYSRNSRHLLVTAGDDGT----LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----------K  104 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs~DGt----V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG-----------t  104 (568)
                      +..+.++|+++.++++-+..|.    |+++|+.+++.....+....  ...+.|.++++.|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3457899999966666565554    99999998864322222211  22399999988877665333           4


Q ss_pred             EEEEECCCCcee--eEee--cCCC-eEEEEEecCCCEEEEEEcC----CeEEEEECCCC
Q 008356          105 LYTYDPGSRRPS--SCIT--YEAP-FSSLAFIDDDWILTAGTSN----GRVVFYDIRGK  154 (568)
Q Consensus       105 V~IWDlrt~~~v--~~~~--h~~~-ItsLafsPdg~~LasGs~D----G~V~VWDlrt~  154 (568)
                      |++|.+.+....  .++.  .... ...+..++++++|++....    ..|.+.|+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            888998876533  3332  2233 6788899999998875432    35788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.51  E-value=0.024  Score=56.34  Aligned_cols=102  Identities=8%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecC-CCeEEE
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYE-APFSSL  128 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslaf-sPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~-~~ItsL  128 (568)
                      -+++|+.+|.|++|..............-...|-++-- -.++.+.++++.|+.|+.|++.-.+.+... .|. ..+..+
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            58899999999999986322111111112222333222 225668899999999999999887776655 344 444444


Q ss_pred             EEecCCCEEEEE--EcCCeEEEEECCC
Q 008356          129 AFIDDDWILTAG--TSNGRVVFYDIRG  153 (568)
Q Consensus       129 afsPdg~~LasG--s~DG~V~VWDlrt  153 (568)
                      .....+++|+..  +.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            455555566655  5666666666654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.47  E-value=0.032  Score=63.86  Aligned_cols=109  Identities=12%  Similarity=0.199  Sum_probs=84.5

Q ss_pred             EEEEEEccCCCeEEEEEe----CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           40 LRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs----~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      -+-..|+|... +|++++    ..|.|-||- +++++....  ..+-.+++++|+|....|+.|-.-|.+.+|...+.+.
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            34467999888 777765    457888885 334432211  1223467799999999999999999999999877654


Q ss_pred             eeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356          116 SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus       116 v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      -... .|..+|..+.|+++|..|+++..-|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4333 799999999999999999999999999999877

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.40  E-value=0.15  Score=60.41  Aligned_cols=148  Identities=11%  Similarity=0.027  Sum_probs=95.1

Q ss_pred             CCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCce----eE------EeccCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 008356           37 EQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPK----VS------WLKQHSAPTAGISFSS-DDKIIASVGLDKK  104 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~~----v~------~l~~H~~~VtslafsP-dg~~LaSgs~DGt  104 (568)
                      .-.+..+...+|+....+.-+ .+-.|+.||+..-..-    ..      ........+.++.|+| -....+.+..|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            334455566666653333333 3447999998543211    11      1222334567888998 3445677788998


Q ss_pred             EEEEECCCCc-eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCe
Q 008356          105 LYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPV  181 (568)
Q Consensus       105 V~IWDlrt~~-~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~--~h~~~VtsLafspdg~~  181 (568)
                      |++.-+.... .+..+......+|++|+|.|+.+++|...|++.-|......+  ..+...  .....|.+|+|-....+
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeE
Confidence            9888765432 233345667889999999999999999999999998765421  112111  12467999999988888


Q ss_pred             EEEec
Q 008356          182 FIDET  186 (568)
Q Consensus       182 Las~s  186 (568)
                      ++.-+
T Consensus       258 lvvy~  262 (1405)
T KOG3630|consen  258 LVVYG  262 (1405)
T ss_pred             EEEec
Confidence            77653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.31  E-value=4  Score=41.88  Aligned_cols=169  Identities=15%  Similarity=0.175  Sum_probs=99.7

Q ss_pred             CCCCEEEEEECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            4 CKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         4 pdG~~LasGs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      .+|.++-+.|.-|  .|+.+|+.+++......-...-.-..++...  +.++.-.=.++...+||..+-+. +..+. ..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~-~~~~~-y~  129 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK-IGTFP-YP  129 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE-EEEEE--S
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE-EEEEe-cC
Confidence            4566666666666  6999999999987666543333333344443  34666667899999999987663 33332 23


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---c---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h---~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ..=..++  .+++.|+.......|+++|..+.+.+..+.   .   -..++-+.|. +|.+.|=.=....|...|+.++.
T Consensus       130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence            3445666  456777777778899999998877666552   1   2346677776 45555445556677777887763


Q ss_pred             CceEEEeec-------------CCCCCeeEEEEccCCC
Q 008356          156 QPLTVLRAC-------------SSSEAVSSLCWQRAKP  180 (568)
Q Consensus       156 ~~v~~l~~~-------------~h~~~VtsLafspdg~  180 (568)
                       ....+...             ......+.|+|+|..+
T Consensus       207 -V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~  243 (264)
T PF05096_consen  207 -VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD  243 (264)
T ss_dssp             -EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred             -EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence             33333211             1135688999988643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.16  E-value=1.4  Score=48.06  Aligned_cols=196  Identities=11%  Similarity=0.058  Sum_probs=91.6

Q ss_pred             CCCEEEEEE-CCCcEEEEECCC----CceeEEeeC---CC---CCcEEEEEEccCCCeEEEEEe--CC----CeEEEEEC
Q 008356            5 KDEHLASIS-LSGDLILHNLAS----GAKAAELKD---PN---EQVLRVLDYSRNSRHLLVTAG--DD----GTLHLWDT   67 (568)
Q Consensus         5 dG~~LasGs-~DG~V~VWDl~t----g~~v~~l~~---~h---~~~Vs~Lafspdg~~lLaTgs--~D----GtV~VWDl   67 (568)
                      +.++|++.+ ..+.|+|+|+.+    .+..+.+..   ..   -..-..+..-|+|+ +++++-  .+    |-+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence            456787777 678999999873    334444432   00   01223455567887 666642  22    45888887


Q ss_pred             CCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEECCCCceeeEeecC---
Q 008356           68 TGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGL--------------------DKKLYTYDPGSRRPSSCITYE---  122 (568)
Q Consensus        68 ~t~~~~v~~l~~--H~~~VtslafsPdg~~LaSgs~--------------------DGtV~IWDlrt~~~v~~~~h~---  122 (568)
                      ++.+.+-.+...  ....-+++-|.|..+.+++...                    -.+|.+||+.+.+.++.+...   
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            766643333222  2334577888998898888643                    347999999999999998644   


Q ss_pred             CCeEEEEEecC--CCEEEEEE-cCCeEEEEEC-CCCCC-ceEEEeecC--C---------------CCCeeEEEEccCCC
Q 008356          123 APFSSLAFIDD--DWILTAGT-SNGRVVFYDI-RGKPQ-PLTVLRACS--S---------------SEAVSSLCWQRAKP  180 (568)
Q Consensus       123 ~~ItsLafsPd--g~~LasGs-~DG~V~VWDl-rt~~~-~v~~l~~~~--h---------------~~~VtsLafspdg~  180 (568)
                      .....+.|..+  ..+=++|+ -...|..|-- +.+.- ..+++....  .               ..-|+.|..+.|  
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD--  322 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD--  322 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT--
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC--
Confidence            23556777654  34333332 3445555543 22211 111111110  0               234677777776  


Q ss_pred             eEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          181 VFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       181 ~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                               ++.+++++-.+|.|+.||+....
T Consensus       323 ---------DrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  323 ---------DRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ---------S-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ---------CCEEEEEcccCCcEEEEecCCCC
Confidence                     44456666779999999997533

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=0.2  Score=55.27  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=92.8

Q ss_pred             EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCe------EEEEEeCCCeEEEEECCCCCc-eeEEeccCC-
Q 008356           10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRH------LLVTAGDDGTLHLWDTTGRSP-KVSWLKQHS-   81 (568)
Q Consensus        10 asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~------lLaTgs~DGtV~VWDl~t~~~-~v~~l~~H~-   81 (568)
                      ..+.....|+-.|++.|+.+.+.+- +.. |..+.+.|+.+.      --+.|-.|..|.-||.+-... ++.+...|. 
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            3455566788899999999998885 333 666778776531      124566788899999864332 233333332 


Q ss_pred             ---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           82 ---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        82 ---~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v-~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                         ....|++-. ...+|++|+.+|.|++||- .+... ..+ +...+|..+....+|++|++.+ +..+.+-++.
T Consensus       428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence               234444443 4557999999999999997 44333 223 5788999999999999987665 4566666664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.1  Score=61.49  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=73.8

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeE---E
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFS---S  127 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~It---s  127 (568)
                      .++.|+..|.|-..|..++-.....-..-..+|++++|+.+|..++.|-.+|-|.+||+..+++++.+. +..+..   .
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            688899999999999887543333334456789999999999999999999999999999998888773 444433   3


Q ss_pred             EEEecCCCEEEEEEcCCeEEEEEC
Q 008356          128 LAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus       128 LafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      +.+..++..++++...|.  +|.+
T Consensus       181 v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEeCCCcEEEEccCCCc--eEEE
Confidence            444445567777777775  5544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.02  E-value=5.4  Score=47.12  Aligned_cols=112  Identities=11%  Similarity=0.044  Sum_probs=70.8

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCC-------cEEEEEEcc----------------CCCeEEEEEeCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-------VLRVLDYSR----------------NSRHLLVTAGDDGTL   62 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~-------~Vs~Lafsp----------------dg~~lLaTgs~DGtV   62 (568)
                      +..|++++.++.|+-.|..+|+.+-.+......       .++.+.+..                +++ .++.++.|+.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence            567888888999999999999988776542211       122233321                122 57778889999


Q ss_pred             EEEECCCCCceeEEeccCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEECCCCceee
Q 008356           63 HLWDTTGRSPKVSWLKQHSAPTA-------------GISFSS--DDKIIASVGL----------DKKLYTYDPGSRRPSS  117 (568)
Q Consensus        63 ~VWDl~t~~~~v~~l~~H~~~Vt-------------slafsP--dg~~LaSgs~----------DGtV~IWDlrt~~~v~  117 (568)
                      +-.|.++++..  .-.+..+.|.             .+.-.|  .+..++.++.          +|.|+-+|.++|+.+.
T Consensus       273 iALDA~TGk~~--W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       273 IALDADTGKLC--EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEEECCCCCEE--EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999888732  2112222111             111123  3455666642          6889999999999887


Q ss_pred             Eee
Q 008356          118 CIT  120 (568)
Q Consensus       118 ~~~  120 (568)
                      .+.
T Consensus       351 ~~~  353 (764)
T TIGR03074       351 AWD  353 (764)
T ss_pred             EEe
Confidence            663

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.93  E-value=0.073  Score=52.96  Aligned_cols=104  Identities=13%  Similarity=0.201  Sum_probs=56.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEE-EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-CC
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVL-DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-AP   83 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~L-afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-~~   83 (568)
                      +..+++|..+|.|++|++.--.............|.++ .-..++ .+.++++.||.|+.|++.-.+. +...-.|. ..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~  147 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFES  147 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc-ceeEEeccCCceeeeccccCce-eeeeccccCCC
Confidence            35678899999999999862211111111122333332 222222 3889999999999999976652 33344454 33


Q ss_pred             eEEEEEcCCCCEEEEE--eCCCeEEEEECC
Q 008356           84 TAGISFSSDDKIIASV--GLDKKLYTYDPG  111 (568)
Q Consensus        84 VtslafsPdg~~LaSg--s~DGtV~IWDlr  111 (568)
                      +..+.....++.|+..  +.|..++.|++.
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchh
Confidence            3333333333444444  444444444443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.87  E-value=0.097  Score=61.63  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=61.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCce--eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 008356           92 DDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA  169 (568)
Q Consensus        92 dg~~LaSgs~DGtV~IWDlrt~~~--v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~  169 (568)
                      .+..++.|+..|.|...|.+..-.  .+-....++|++++|+.+|.+++.|..+|.|.+||+... .+.+.+.  .|..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~--e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVIT--EHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeee--ecCCc
Confidence            456788899999999888876422  122245789999999999999999999999999999987 4566666  34455


Q ss_pred             eeEEEE
Q 008356          170 VSSLCW  175 (568)
Q Consensus       170 VtsLaf  175 (568)
                      ++.+-+
T Consensus       175 ~t~vi~  180 (1206)
T KOG2079|consen  175 VTGVIF  180 (1206)
T ss_pred             cceEEE
Confidence            555443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.82  E-value=2.9  Score=44.46  Aligned_cols=146  Identities=15%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             CCcEEEEEEccCCCeEEE-EEeCCC---eEEEEECCCCCceeEEeccCCCCe---EEEEEc-CCCC-EEEEEeCCC--eE
Q 008356           37 EQVLRVLDYSRNSRHLLV-TAGDDG---TLHLWDTTGRSPKVSWLKQHSAPT---AGISFS-SDDK-IIASVGLDK--KL  105 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLa-Tgs~DG---tV~VWDl~t~~~~v~~l~~H~~~V---tslafs-Pdg~-~LaSgs~DG--tV  105 (568)
                      ...+..+.|.++++.+++ ...++.   .+.++|..++...+.........|   ..+.|. +++. +|.....||  .|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            456777899998873333 333333   367777766654433333333333   355665 6444 444555677  46


Q ss_pred             EEEECCCCceeeEeecCCCeE-EEEEecCCCEEE-EEEcC----CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356          106 YTYDPGSRRPSSCITYEAPFS-SLAFIDDDWILT-AGTSN----GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (568)
Q Consensus       106 ~IWDlrt~~~v~~~~h~~~It-sLafsPdg~~La-sGs~D----G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg  179 (568)
                      +++|...+.........-.|. -+.|+++++.|+ ++..+    ..|...+++. ....+.+.  ...+.-..+.|+|++
T Consensus       263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT--~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLT--CEDGDHYSASFSPDG  339 (353)
T ss_dssp             EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESS--TTSSTTEEEEE-TTS
T ss_pred             EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEecc--CCCCCceEEEECCCC
Confidence            677777776544334555564 477888776655 44442    2455555551 22234443  222222589999999


Q ss_pred             CeEEEe
Q 008356          180 PVFIDE  185 (568)
Q Consensus       180 ~~Las~  185 (568)
                      ++++..
T Consensus       340 ~y~v~~  345 (353)
T PF00930_consen  340 KYYVDT  345 (353)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            887644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.79  E-value=1.1  Score=51.05  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=81.9

Q ss_pred             CCEEEEEECCC------cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 008356            6 DEHLASISLSG------DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK   73 (568)
Q Consensus         6 G~~LasGs~DG------~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D------GtV~VWDl~t~~~~   73 (568)
                      +.++++||.++      .|..||..++.......-.....-.+++... + .++++|+.|      ..+..||...++  
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~--  360 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ--  360 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc--
Confidence            45677788773      5888898776433222211222233344443 3 488999998      357888887765  


Q ss_pred             eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC-----eEEEEECCCCceeeEeecCCCeEEE-EEecCCCEEEEEEcCC--
Q 008356           74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK-----KLYTYDPGSRRPSSCITYEAPFSSL-AFIDDDWILTAGTSNG--  144 (568)
Q Consensus        74 v~~l~~H~~~VtslafsP-dg~~LaSgs~DG-----tV~IWDlrt~~~v~~~~h~~~ItsL-afsPdg~~LasGs~DG--  144 (568)
                      ...+..-...-..+.... +|.+.++||.||     .|-.||.++.+-...-......... ...-+|.+.++|+.++  
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            222222211112222222 688889999987     4778888776533222111121111 1222577888888654  


Q ss_pred             ----eEEEEECCCC
Q 008356          145 ----RVVFYDIRGK  154 (568)
Q Consensus       145 ----~V~VWDlrt~  154 (568)
                          .|..||+.+.
T Consensus       441 ~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  441 NCLNSVECYDPETN  454 (571)
T ss_pred             cccceEEEEcCCCC
Confidence                4788998875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.63  E-value=1.9  Score=44.54  Aligned_cols=194  Identities=15%  Similarity=0.168  Sum_probs=109.4

Q ss_pred             EEEEECCCc-EEEEECCCCceeEEeeCCCCC-cEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCceeEEeccCC
Q 008356            9 LASISLSGD-LILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         9 LasGs~DG~-V~VWDl~tg~~v~~l~~~h~~-~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      ++.+-.-|+ ..++|....+....+...... ..-.=.|+++|+ +|+..-.|     |.|-|||.+..-..+-.+..|.
T Consensus        83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G  161 (366)
T COG3490          83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG  161 (366)
T ss_pred             EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCC
Confidence            334444343 456777666654444321111 111236899998 55544333     7799999987766677888898


Q ss_pred             CCeEEEEEcCCCCEEEEEeC------C------------CeEEEEECCCCceeeEee-----cCCCeEEEEEecCCCEEE
Q 008356           82 APTAGISFSSDDKIIASVGL------D------------KKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~------D------------GtV~IWDlrt~~~v~~~~-----h~~~ItsLafsPdg~~La  138 (568)
                      -....+.|.+||+.++.+..      |            -.+.+.|-.+++.+....     +.-.|+.++..+||.+++
T Consensus       162 iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf  241 (366)
T COG3490         162 IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF  241 (366)
T ss_pred             cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence            88899999999999987653      1            134555555555543331     334578888888887766


Q ss_pred             EEEcCCeE----EEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          139 AGTSNGRV----VFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       139 sGs~DG~V----~VWDlrt~~~~v~~l~~~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .+-..|.-    -+.-...+..+++.+...     .-...|-+|+.+.+           ++.+.++.-..+...+||..
T Consensus       242 gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~-----------~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         242 GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR-----------DGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc-----------CCeEEEecCCCCeEEEEEcC
Confidence            55443320    000111111222222211     01123444454432           45556666667888899987


Q ss_pred             CCCcc
Q 008356          210 PSVTT  214 (568)
Q Consensus       210 ~~~~~  214 (568)
                      .....
T Consensus       311 tG~vv  315 (366)
T COG3490         311 TGAVV  315 (366)
T ss_pred             CCcEE
Confidence            75543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.41  E-value=4.7  Score=45.54  Aligned_cols=142  Identities=13%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             cEEEEECCCCceeEEeeCCCCCc--------EEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeE-------Eec-
Q 008356           17 DLILHNLASGAKAAELKDPNEQV--------LRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVS-------WLK-   78 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~--------Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~~~~v~-------~l~-   78 (568)
                      .|.-.|+++|+.+-.++..+.+.        ..-+.+..+|+  .+++.+..+|.+++.|-.+++.+..       .+. 
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            57778999999887776533211        11133334554  5788999999999999988774210       010 


Q ss_pred             c---CC-CCe----------------------------EEEEEcCCCCEEEEEeC-------------------------
Q 008356           79 Q---HS-APT----------------------------AGISFSSDDKIIASVGL-------------------------  101 (568)
Q Consensus        79 ~---H~-~~V----------------------------tslafsPdg~~LaSgs~-------------------------  101 (568)
                      .   .. .++                            ..++++|+..+++....                         
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence            0   00 000                            11455565544443322                         


Q ss_pred             --------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356          102 --------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus       102 --------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                              -+.|.-+|+.+++.+.......+...-.+.-.+.+++.+..+|.++.+|.++++...
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence                    246888888888887766543332211122245677788889999999999996443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.28  E-value=1.2  Score=51.10  Aligned_cols=111  Identities=19%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEec--CCCEEEEEEcCCeEEEEECC-----CC
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIR-----GK  154 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsP--dg~~LasGs~DG~V~VWDlr-----t~  154 (568)
                      +.-+.-+.-++..++-.....+.|||.+.+......  ...+.|.++.|..  +++.+++.+..+.|.+|.-.     ..
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            344444443443334334457999999988755444  4588999999974  78888888889999998542     11


Q ss_pred             ---CCceEEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          155 ---PQPLTVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       155 ---~~~v~~l~~~~h~-~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                         -.+++.+....|. .+|.+..|.++|..++..              ++.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------------GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------------GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--------------CCEEEEECC
Confidence               1233444333444 578888998877665554              566777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.23  E-value=3.3  Score=49.03  Aligned_cols=163  Identities=7%  Similarity=0.102  Sum_probs=102.4

Q ss_pred             EEEEECCCCceeEEeeCCCCCc---EEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEecc--CCC
Q 008356           18 LILHNLASGAKAAELKDPNEQV---LRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQ--HSA   82 (568)
Q Consensus        18 V~VWDl~tg~~v~~l~~~h~~~---Vs~Lafspdg~~lLaTgs----------~DGtV~VWDl~t~~~~v~~l~~--H~~   82 (568)
                      ++++|-++-+.++..+-...+.   |..+.|..+...+++.|.          ..|.|.||.+.... .++....  -.+
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLELVAETVVKG  830 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-ceeeeeeeeecc
Confidence            5666665555444333222222   333457777455677664          34788888887622 1322222  234


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      .|.++..- +|+++|  +-...|++|+..+++.++.- .+..++..+.+.-.|..+++|.--+.+.+...+..+.....+
T Consensus       831 av~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev  907 (1096)
T KOG1897|consen  831 AVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV  907 (1096)
T ss_pred             ceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence            45544432 566665  44568999999988655544 677888899998899999999998888887776654334444


Q ss_pred             eecCCCCCeeEEEEccCCCeEEE
Q 008356          162 RACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las  184 (568)
                      ...-+..+.+++.+-.+..++.+
T Consensus       908 ArD~~p~Wmtaveil~~d~ylga  930 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEILDDDTYLGA  930 (1096)
T ss_pred             ehhhCccceeeEEEecCceEEee
Confidence            44457778888877665555443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.22  E-value=1.1  Score=48.65  Aligned_cols=75  Identities=21%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEec-----CC---CEEEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFID-----DD---WILTA  139 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsP-----dg---~~Las  139 (568)
                      +....++|++++.+ |=-+++.|..+|.|.|.|+|....+....         ....++++.|.-     |+   -+|++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            44456889999987 66789999999999999999887776532         233578888873     33   57889


Q ss_pred             EEcCCeEEEEECC
Q 008356          140 GTSNGRVVFYDIR  152 (568)
Q Consensus       140 Gs~DG~V~VWDlr  152 (568)
                      |+..|.+.+|.+.
T Consensus       161 GTn~G~v~~fkIl  173 (395)
T PF08596_consen  161 GTNSGNVLTFKIL  173 (395)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCCEEEEEEe
Confidence            9999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.17  E-value=1.3  Score=50.43  Aligned_cols=145  Identities=14%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             CCCEEEEEECC-C-----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCCCce
Q 008356            5 KDEHLASISLS-G-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGRSPK   73 (568)
Q Consensus         5 dG~~LasGs~D-G-----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt-----V~VWDl~t~~~~   73 (568)
                      +|...++||.| |     .+..||..+.+-.. +..-...... +....-+..+.+.|+.||.     |-.||..+.+  
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~--  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK--  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCc--
Confidence            45677888888 3     57788877665222 1110111111 1111122348899999975     7788887765  


Q ss_pred             eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcCC
Q 008356           74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK------KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus        74 v~~l~~H~~~VtslafsP-dg~~LaSgs~DG------tV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~DG  144 (568)
                      .................. +++..+.||.++      .|..||..+++-...-.  ....-..++. -++.+.++|+.|+
T Consensus       408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDG  486 (571)
T ss_pred             ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccC
Confidence            222332333344444433 688888888665      57889988775433321  1111122222 2477888888776


Q ss_pred             e-----EEEEECCCC
Q 008356          145 R-----VVFYDIRGK  154 (568)
Q Consensus       145 ~-----V~VWDlrt~  154 (568)
                      .     |..||+++.
T Consensus       487 ~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  487 TSALSSVERYDPETN  501 (571)
T ss_pred             CCccceEEEEcCCCC
Confidence            3     788888876

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.13  E-value=3.4  Score=43.86  Aligned_cols=156  Identities=20%  Similarity=0.295  Sum_probs=93.1

Q ss_pred             CEEEEEECCCcEEEEECC-CCceeEE---eeCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-Eecc-
Q 008356            7 EHLASISLSGDLILHNLA-SGAKAAE---LKDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLKQ-   79 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~-tg~~v~~---l~~~h~~-~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~-~l~~-   79 (568)
                      +.+.+-|.||.+.-..+. .|+....   +.....+ .+..-++...+.++++ -+.+|.|+--|+........ .+.. 
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCccccc
Confidence            457778889999998887 5654322   1111222 2323345555543444 68899999999877652211 1110 


Q ss_pred             ---------CCCCeEEEEEcCCCCEEEEE-e--CCC-------eEEEEECCCCceeeEeecCCCeEEEEEecCCC-EEEE
Q 008356           80 ---------HSAPTAGISFSSDDKIIASV-G--LDK-------KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTA  139 (568)
Q Consensus        80 ---------H~~~VtslafsPdg~~LaSg-s--~DG-------tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~-~Las  139 (568)
                               -.+.-.-+++++..+.|++- .  .++       .|.+||+.+++.+..+..+.++.+|..+.+.+ +|++
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                     01223446777744444432 1  122       59999999999999998777899999999766 5544


Q ss_pred             E-EcCCeEEEEECCCCCCceEEEeec
Q 008356          140 G-TSNGRVVFYDIRGKPQPLTVLRAC  164 (568)
Q Consensus       140 G-s~DG~V~VWDlrt~~~~v~~l~~~  164 (568)
                      . ..++.|.+||..+++ .+..+...
T Consensus       307 ~~~~~~~l~v~D~~tGk-~~~~~~~l  331 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGK-LVRSIEQL  331 (342)
T ss_dssp             EETTTTEEEEEETTT---EEEEE---
T ss_pred             EcCCCCeEEEEeCcCCc-EEeehhcc
Confidence            4 457899999999983 44555433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.06  E-value=0.98  Score=50.68  Aligned_cols=138  Identities=12%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCC
Q 008356           39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD----DKIIASVGLDKKLYTYDPGS  112 (568)
Q Consensus        39 ~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd----g~~LaSgs~DGtV~IWDlrt  112 (568)
                      ++..++|. ||++++++.-  .+|.+++=|-        ...+.-..|..+.|.|-    .-.++.......|.+|.+.-
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            56778997 5666777653  3444433221        12334456999999983    33566677778899998852


Q ss_pred             -----CceeeEe--ecCC--C--eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 008356          113 -----RRPSSCI--TYEA--P--FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV  181 (568)
Q Consensus       113 -----~~~v~~~--~h~~--~--ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~  181 (568)
                           .+.+...  ....  +  -..+.|+|...+|++-..+..-.+++++.....++.-  ....+-|.|.+|.+||+.
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--i~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--IKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe--ccCCceEEEEEecCcCCE
Confidence                 2222111  1111  1  3468899999999988887777788887665433332  256788999999999999


Q ss_pred             EEEecc
Q 008356          182 FIDETT  187 (568)
Q Consensus       182 Las~s~  187 (568)
                      |+.+-+
T Consensus       170 LVVAvG  175 (671)
T PF15390_consen  170 LVVAVG  175 (671)
T ss_pred             EEEEeC
Confidence            876633

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.00  E-value=4.8  Score=41.87  Aligned_cols=153  Identities=12%  Similarity=0.182  Sum_probs=99.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV------   74 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v------   74 (568)
                      .|||+.+.|++......-.|+=-.+|+.+..+.-..-.-...|+|..+++ +.++--.++.+.++.++......      
T Consensus        92 Tynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~  170 (316)
T COG3204          92 TYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADTTVISAKVQK  170 (316)
T ss_pred             eeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCccEEeccceE
Confidence            48999999888887777777766789988876542222234577887765 55555678888888875442111      


Q ss_pred             ---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eee--Ee-e-------cCCCeEEEEEec-CCCEEEE
Q 008356           75 ---SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSS--CI-T-------YEAPFSSLAFID-DDWILTA  139 (568)
Q Consensus        75 ---~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~--~~-~-------h~~~ItsLafsP-dg~~Las  139 (568)
                         ......+.....++|.|....|+.+=+-.=+.||.+.... .+.  .. .       .-..+..+.|++ .+..|+.
T Consensus       171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL  250 (316)
T COG3204         171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL  250 (316)
T ss_pred             EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence               1111114567889999977777777766656666554322 111  11 0       123467888887 4667777


Q ss_pred             EEcCCeEEEEECCCC
Q 008356          140 GTSNGRVVFYDIRGK  154 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~  154 (568)
                      +.+++.|.-.|....
T Consensus       251 S~ESr~l~Evd~~G~  265 (316)
T COG3204         251 SDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCceEEEEecCCC
Confidence            888888888888875

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.98  E-value=1.3  Score=44.51  Aligned_cols=94  Identities=11%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             cEEEEEEccCCCeEEEEEeCCCeEEEEE--CCCCCc----eeEEecc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356           39 VLRVLDYSRNSRHLLVTAGDDGTLHLWD--TTGRSP----KVSWLKQ----HSAPTAGISFSSDDKIIASVGLDKKLYTY  108 (568)
Q Consensus        39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWD--l~t~~~----~v~~l~~----H~~~VtslafsPdg~~LaSgs~DGtV~IW  108 (568)
                      .-+.++|+.+.+.+.++-+.+-.|.-||  ..++..    .+..++.    ..-..-.++...+|++.+++-..++|...
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            3456899988886777778888898888  444321    1112221    11123345556689999999999999999


Q ss_pred             ECCCCceeeEee-cCCCeEEEEEec
Q 008356          109 DPGSRRPSSCIT-YEAPFSSLAFID  132 (568)
Q Consensus       109 Dlrt~~~v~~~~-h~~~ItsLafsP  132 (568)
                      |..+|+.+..+. ....|+++||--
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecC
Confidence            999999998884 466799999964

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.86  E-value=1.7  Score=50.32  Aligned_cols=150  Identities=9%  Similarity=0.108  Sum_probs=93.1

Q ss_pred             EEEEEeCCCeEEEEECCCCCcee-----EEe----------------ccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKV-----SWL----------------KQHSAPTAGISFSS--DDKIIASVGLDKKLYTY  108 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v-----~~l----------------~~H~~~VtslafsP--dg~~LaSgs~DGtV~IW  108 (568)
                      ++++|. .+.|+||+.+......     ..+                ......|+.|....  +...|+.|.+||.|.+|
T Consensus        51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y  129 (717)
T PF08728_consen   51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY  129 (717)
T ss_pred             EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence            566654 6889999985432110     000                00223466665554  56788999999999999


Q ss_pred             ECCC-------C-------------ceeeEeecCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 008356          109 DPGS-------R-------------RPSSCITYEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus       109 Dlrt-------~-------------~~v~~~~h~~~ItsLafs--Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                      .++.       .             ++...+.....++.++++  ...++||+++....|.||-.............+.|
T Consensus       130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~  209 (717)
T PF08728_consen  130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQH  209 (717)
T ss_pred             EHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccccc
Confidence            7621       0             122333456789999999  77889999998888888866542211111112235


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      ..-|.+|+|-++..      +..+...+++++-.|.+.+|++
T Consensus       210 ~hNIP~VSFl~~~~------d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  210 SHNIPNVSFLDDDL------DPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccCCCeeEeecCCC------CCccceEEEEEeccCcEEEEEE
Confidence            66788999988521      0011135666777888888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.85  E-value=2.8  Score=43.50  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=75.6

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS  116 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v  116 (568)
                      ..+.++.|+|+.+.++++ .....-.||=-..+. .++.+.- .-.....|+|..++.+.++--.++.+.++.+.....+
T Consensus        86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccceeeCCCcceEEEe-cCCCceEEEEecCCc-eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            348999999999854444 444444444333333 2333221 1233456788878888888778888888877654221


Q ss_pred             e-----Ee-----ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356          117 S-----CI-----TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       117 ~-----~~-----~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .     .+     .+ ......++|.|....|.++-+..-+.||......
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence            1     11     12 5678899999999999988888888888777543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.73  E-value=0.31  Score=57.95  Aligned_cols=135  Identities=12%  Similarity=0.023  Sum_probs=87.0

Q ss_pred             cCCCCEEEEEE--CCCcEEEEECCCCcee-----EEeeC-----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            3 NCKDEHLASIS--LSGDLILHNLASGAKA-----AELKD-----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         3 SpdG~~LasGs--~DG~V~VWDl~tg~~v-----~~l~~-----~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      ++|+...++..  .+-.|+.||+++-..-     .-++.     .......++.|+|.-....+.+..|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            45655544433  3337888998642211     11111     112345678899976645677888999999887654


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEE
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~Las  139 (568)
                      ...+.. ......++|++|+|.|+.++.|-..|++.-|-..- +....+     .....|.||+|-....+|++
T Consensus       189 ~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  189 AQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            432322 23456689999999999999999999998886543 222222     13578999999877666655

>PHA03098 kelch-like protein; Provisional

Probab=93.64  E-value=2.3  Score=47.73  Aligned_cols=141  Identities=11%  Similarity=0.037  Sum_probs=69.8

Q ss_pred             CCEEEEEECCC------cEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 008356            6 DEHLASISLSG------DLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP   72 (568)
Q Consensus         6 G~~LasGs~DG------~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~~   72 (568)
                      +..++.||.++      .+..||..+.+.. .+....  ......+.  -++ .+++.|+.+     ..+..||..++. 
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~-  369 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNN-RIYVIGGIYNSISLNTVESWKPGESK-  369 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECC-EEEEEeCCCCCEecceEEEEcCCCCc-
Confidence            44556666542      5778887665532 221101  11112222  234 477888865     347788887654 


Q ss_pred             eeEEeccCCCC--eEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEc
Q 008356           73 KVSWLKQHSAP--TAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        73 ~v~~l~~H~~~--VtslafsPdg~~LaSgs~D------GtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~  142 (568)
                       .........+  -.+++. -+++.++.||.+      ..+..||+.+.+-...-.  ......++ ...++.+++.|+.
T Consensus       370 -W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~  446 (534)
T PHA03098        370 -WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGI  446 (534)
T ss_pred             -eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCc
Confidence             2222211111  112222 256777777732      358899988764332211  11111122 2235667777764


Q ss_pred             C--------CeEEEEECCCC
Q 008356          143 N--------GRVVFYDIRGK  154 (568)
Q Consensus       143 D--------G~V~VWDlrt~  154 (568)
                      +        ..+.+||+.+.
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             cCCCCCcccceEEEecCCCC
Confidence            3        23888998875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.60  E-value=8.3  Score=41.71  Aligned_cols=174  Identities=11%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC---CCe-EEEEECCCCCceeEEeccCCC--CeEEEEEc
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGT-LHLWDTTGRSPKVSWLKQHSA--PTAGISFS   90 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~---DGt-V~VWDl~t~~~~v~~l~~H~~--~Vtslafs   90 (568)
                      .|...|+.+|+....+.  ....+..+.|+|....+|+-|-+   +.. -+||-++........+..|..  .+.-=-|.
T Consensus       169 ~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~  246 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV  246 (386)
T ss_dssp             EEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred             eEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence            35556777777655555  34567778899988866666543   332 467776443323444444432  23444588


Q ss_pred             CCCCEEEEEe-----CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC----------------eEEEE
Q 008356           91 SDDKIIASVG-----LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG----------------RVVFY  149 (568)
Q Consensus        91 Pdg~~LaSgs-----~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG----------------~V~VW  149 (568)
                      +||..|...+     .+..|.-+|+.+++....... .....+-.++||++++--+.|.                .|+++
T Consensus       247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred             CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence            8998877643     245788889998766443332 2455666677888776533332                46677


Q ss_pred             ECCCCCCceEEEeec-------CCCCC--eeEEEEccCCCeEEEeccCCCCeEEE
Q 008356          150 DIRGKPQPLTVLRAC-------SSSEA--VSSLCWQRAKPVFIDETTCKAETALL  195 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~-------~h~~~--VtsLafspdg~~Las~s~ssd~~~Ll  195 (568)
                      ++.....  ..+..+       .+...  =....|+|||++++..++..+...++
T Consensus       326 ~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  326 DVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             ETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             ccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence            7765421  222211       11111  13578999988887665544444433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.55  E-value=2.6  Score=43.70  Aligned_cols=128  Identities=16%  Similarity=0.171  Sum_probs=82.7

Q ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCceeeEee-
Q 008356           44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKK-LYTYDPGSRRPSSCIT-  120 (568)
Q Consensus        44 afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGt-V~IWDlrt~~~v~~~~-  120 (568)
                      ...+++++.+++.+++|.+..-            ..-......|+|+| ...-++.+-.-|+ ..++|....+...++. 
T Consensus        42 f~~~dgs~g~a~~~eaGk~v~~------------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s  109 (366)
T COG3490          42 FDARDGSFGAATLSEAGKIVFA------------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS  109 (366)
T ss_pred             eeccCCceeEEEEccCCceeee------------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence            3455666666666666655321            11123344577777 4555666666664 5688988876655542 


Q ss_pred             cCC--CeEEEEEecCCCEEEEEEc-----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          121 YEA--PFSSLAFIDDDWILTAGTS-----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       121 h~~--~ItsLafsPdg~~LasGs~-----DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .++  -.-.=.|+|||.+|++.-.     .|.|-|||.+..-+.+-.+.  .|.-....+.|.+||+.++..
T Consensus       110 ~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~--t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         110 QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS--THGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc--cCCcCcceeEEecCCcEEEEe
Confidence            111  2234469999999988544     37799999997655444444  566777889999999998876

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.50  E-value=2.1  Score=45.05  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC------CCceeEEeccCCCCeEEEEE
Q 008356           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------RSPKVSWLKQHSAPTAGISF   89 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t------~~~~v~~l~~H~~~Vtslaf   89 (568)
                      |.|+.+|. .+..++.+.. +-..-+.|+|+|+++.++++=+..+.|+-|++..      +......+....+..-.++.
T Consensus       143 G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v  220 (307)
T COG3386         143 GSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV  220 (307)
T ss_pred             ceEEEEcC-CCCEEEeecC-cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence            33444443 4555554443 3345577999999985556556678899998862      11112223334566677888


Q ss_pred             cCCCCEEEEEeCCC-eEEEEECCCCceeeEeecC-CCeEEEEEec-CCCEEEEEE
Q 008356           90 SSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYE-APFSSLAFID-DDWILTAGT  141 (568)
Q Consensus        90 sPdg~~LaSgs~DG-tV~IWDlrt~~~v~~~~h~-~~ItsLafsP-dg~~LasGs  141 (568)
                      ..+|++.+++..+| .|.+|+.. ++.+..+... ..+++++|-- +.+.|++.+
T Consensus       221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            88888886555554 89999988 8888777654 7788888863 344544443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.48  E-value=1.5  Score=46.57  Aligned_cols=140  Identities=19%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             ccCCCCEEEEE--ECCC---cEEEEECCCCceeEEeeCCCCC---cEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            2 YNCKDEHLASI--SLSG---DLILHNLASGAKAAELKDPNEQ---VLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         2 fSpdG~~LasG--s~DG---~V~VWDl~tg~~v~~l~~~h~~---~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      |.++++.|+..  ..+.   .+.++|..+++....+......   ....+.|. +++..++.....||.-+||-++....
T Consensus       191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            56677634333  2222   3666777776654333322222   22245554 77777888878898766665543332


Q ss_pred             eeEEeccCCCCeEE-EEEcCCCCEE-EEEeCC----CeEEEEECC-CCceeeEeecCCCe-EEEEEecCCCEEEEEEc
Q 008356           73 KVSWLKQHSAPTAG-ISFSSDDKII-ASVGLD----KKLYTYDPG-SRRPSSCITYEAPF-SSLAFIDDDWILTAGTS  142 (568)
Q Consensus        73 ~v~~l~~H~~~Vts-lafsPdg~~L-aSgs~D----GtV~IWDlr-t~~~v~~~~h~~~I-tsLafsPdg~~LasGs~  142 (568)
                      ..+.+....-.|.. +.|+++++.| +++..+    ..|+..++. .+. +..+...... ..+.|+|++++++....
T Consensus       271 ~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  271 KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            35567767777855 6677866655 455542    367777777 444 4444433333 59999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.42  E-value=0.065  Score=61.95  Aligned_cols=105  Identities=17%  Similarity=0.308  Sum_probs=65.9

Q ss_pred             CcEEEEECC--CCceeEEe----eCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356           16 GDLILHNLA--SGAKAAEL----KDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (568)
Q Consensus        16 G~V~VWDl~--tg~~v~~l----~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl   87 (568)
                      |.+.|||+.  .|+....+    .......+.-|.|+|-  .+.++..+-.++.|++..++...  ...++.|...+.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccH
Confidence            678899875  45543332    2223344455667663  22367777788889888876654  34566798888888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        88 afsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      +|...|.+.+.+                              ++|||..|+.+..||.|++|.+.
T Consensus       231 a~~~~g~~~l~~------------------------------lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  231 AFFAEGVLKLAS------------------------------LSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             HHHhhchhhhee------------------------------eCCCCcEEEEeecCCccceeeee
Confidence            876544332221                              66777777777777777777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.37  E-value=3.5  Score=44.16  Aligned_cols=139  Identities=15%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             EEEEEEccCCCeEEEEEe-----------CCC-eEEEEECCCC--C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008356           40 LRVLDYSRNSRHLLVTAG-----------DDG-TLHLWDTTGR--S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK  104 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs-----------~DG-tV~VWDl~t~--~-~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGt  104 (568)
                      ...|+|.++|+ ++++-.           ..+ .|.+++-..+  . .....+.......+.+++.+++ +++ +.....
T Consensus        16 P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        16 PIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            34589999998 555432           223 6777764322  1 1233444444567889999888 444 444443


Q ss_pred             EEEEECCCC-----ceeeE---eec-----CCCeEEEEEecCCCEEEEEEcC-------------------CeEEEEECC
Q 008356          105 LYTYDPGSR-----RPSSC---ITY-----EAPFSSLAFIDDDWILTAGTSN-------------------GRVVFYDIR  152 (568)
Q Consensus       105 V~IWDlrt~-----~~v~~---~~h-----~~~ItsLafsPdg~~LasGs~D-------------------G~V~VWDlr  152 (568)
                      +++.|....     +....   +..     ......++|.|||++.++-+..                   |.|.-+|.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            344455321     21111   211     3447789999999876654421                   446666666


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +..  .+++. .+ ..-...++|+++|.++++.
T Consensus       173 g~~--~e~~a-~G-~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       173 GGK--LRVVA-HG-FQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             CCe--EEEEe-cC-cCCCccceECCCCCEEEEc
Confidence            542  23332 22 2335678999988776655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.95  E-value=14  Score=38.86  Aligned_cols=144  Identities=15%  Similarity=0.151  Sum_probs=71.5

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-Cc
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RR  114 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~~  114 (568)
                      ....+..+.-.++++ +++++..-..+.-||--...- ...-+.-..+|..|.|.|++.+.+.+ ..|.|+.=|... ..
T Consensus       143 ~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  143 TSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CcceeEeEEECCCCc-EEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            456788888889987 666665544455777533321 22223356789999999998776644 888888877221 11


Q ss_pred             eeeE--e---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe-ecCCCCCeeEEEEccCCCeEEEe
Q 008356          115 PSSC--I---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       115 ~v~~--~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~-~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ....  .   .....+..++|.+++...++|+. | ..++..+.++. .+..+ ...-..-++.|.|....+-++.+
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G-~l~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-G-TLLVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCC-c-cEEEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEEEC
Confidence            1111  1   12334889999998877776654 4 34455555532 23222 11234457888887654444444

>PRK10115 protease 2; Provisional

Probab=92.92  E-value=23  Score=41.40  Aligned_cols=106  Identities=9%  Similarity=-0.005  Sum_probs=63.5

Q ss_pred             ccCCCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCC
Q 008356            2 YNCKDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRS   71 (568)
Q Consensus         2 fSpdG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~   71 (568)
                      ++|||++|+.+-..     -.|++.|+.+|+.+..... . .. ..++|.++++.++++..++     ..|+.+++.+..
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~  210 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-N-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA  210 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-C-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence            68999988876432     3588999988864322211 1 11 4489999998677765533     368888887662


Q ss_pred             c-eeEEeccCCCCeEEEEEcC-CCCEEEEEe---CCCeEEEEEC
Q 008356           72 P-KVSWLKQHSAPTAGISFSS-DDKIIASVG---LDKKLYTYDP  110 (568)
Q Consensus        72 ~-~v~~l~~H~~~VtslafsP-dg~~LaSgs---~DGtV~IWDl  110 (568)
                      . ....+........-..+.+ ++++++..+   .++.+.+|+.
T Consensus       211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            1 2223333333333223334 777766544   3457888885

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.91  E-value=2  Score=47.00  Aligned_cols=127  Identities=11%  Similarity=0.030  Sum_probs=65.0

Q ss_pred             CCcEEEEECCCCceeEEeeCCCCC-cEEEEEEccC--CCeEEEEEeCCCeEEEEEC-CCCCc---eeEEecc--------
Q 008356           15 SGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSRN--SRHLLVTAGDDGTLHLWDT-TGRSP---KVSWLKQ--------   79 (568)
Q Consensus        15 DG~V~VWDl~tg~~v~~l~~~h~~-~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl-~t~~~---~v~~l~~--------   79 (568)
                      ..+|.+||+.+.+.++.+.-..++ ..-.|.|.++  ..+-|+.+.-..+|..|-- +.++-   ++..+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            457999999999999998865443 3345666544  4444565556666665544 32221   1111111        


Q ss_pred             ---------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc---eeeEeec-----------------CCCeEEEE
Q 008356           80 ---------HSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRR---PSSCITY-----------------EAPFSSLA  129 (568)
Q Consensus        80 ---------H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~---~v~~~~h-----------------~~~ItsLa  129 (568)
                               -..-|++|..+.|+++|...+ .+|.|+.||+....   .+..+..                 .+...-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                     135589999999888886554 79999999998743   2222211                 12346778


Q ss_pred             EecCCCEEEEEE
Q 008356          130 FIDDDWILTAGT  141 (568)
Q Consensus       130 fsPdg~~LasGs  141 (568)
                      ++-||+.|++..
T Consensus       381 lS~DGkRlYvTn  392 (461)
T PF05694_consen  381 LSLDGKRLYVTN  392 (461)
T ss_dssp             E-TTSSEEEEE-
T ss_pred             EccCCeEEEEEe
Confidence            888888887764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.78  E-value=0.36  Score=36.32  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      ....|.+++|+|...+|+.+..||.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999999999999999999998 4443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.47  E-value=0.43  Score=35.90  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356          121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       121 h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ....|.+++|+|...+||.+..+|.|.||.+..
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            456799999999999999999999999999843

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.38  E-value=3.1  Score=47.82  Aligned_cols=107  Identities=17%  Similarity=0.316  Sum_probs=71.3

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC-----CC--
Q 008356           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPG-----SR--  113 (568)
Q Consensus        43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlr-----t~--  113 (568)
                      +.-+.-++ +.++-.....+.|||...............+.|.+++|..  +++.|++.|..+.|.+|--.     ..  
T Consensus        35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            44444444 3333344457999999877633333335578899999975  99999999999999998542     11  


Q ss_pred             --ceeeEe---ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356          114 --RPSSCI---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus       114 --~~v~~~---~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                        .++..+   .+ ..+|.+..|.++|..++..+  +.+.|+|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence              223333   23 36899999999986665443  578888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.38  E-value=16  Score=38.21  Aligned_cols=141  Identities=10%  Similarity=0.065  Sum_probs=92.4

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      ...+.+++++.+   +.+.+.++.-++|.|+.+...+...-. ...+.-.++..+  |++...+..|.-+.++|+.+.+.
T Consensus        86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCC
Confidence            455667777754   677778888899999977654332211 122444555554  88888888666688889987543


Q ss_pred             eeE---ee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          116 SSC---IT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       116 v~~---~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      -..   .. ....-..++.+  |++-..+..|+-+.|.|+.....|..+-+ ..-...+.++..+++.-+++..
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdnr~y~vvy  231 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDNRAYLVVY  231 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCCeeEEEEc
Confidence            322   22 22233566666  77888888999999999998766644322 2233378888888876666554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.22  E-value=4.5  Score=45.66  Aligned_cols=115  Identities=10%  Similarity=0.087  Sum_probs=74.1

Q ss_pred             CcEEEEEEccCC----CeEEEEEeCCCeEEEEECCC-----CCceeEEeccC----CCCeEEEEEcCCCCEEEEEeCCCe
Q 008356           38 QVLRVLDYSRNS----RHLLVTAGDDGTLHLWDTTG-----RSPKVSWLKQH----SAPTAGISFSSDDKIIASVGLDKK  104 (568)
Q Consensus        38 ~~Vs~Lafspdg----~~lLaTgs~DGtV~VWDl~t-----~~~~v~~l~~H----~~~VtslafsPdg~~LaSgs~DGt  104 (568)
                      +.|..+.|.|-+    . -+++......|.||.+..     ++.........    .---..+.|+|....|++-.....
T Consensus        57 EhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            568889999863    3 355567788999999841     22111111111    112356789998888777665555


Q ss_pred             EEEEECCCC--ceeeEeecCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 008356          105 LYTYDPGSR--RPSSCITYEAPFSSLAFIDDDWILTAGTSN-GRVVFYDIRG  153 (568)
Q Consensus       105 V~IWDlrt~--~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G~V~VWDlrt  153 (568)
                      -.+++++..  +...-+...+.|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            556666543  333445778899999999999988776443 3467787543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.19  E-value=0.018  Score=62.68  Aligned_cols=133  Identities=15%  Similarity=0.199  Sum_probs=94.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H   80 (568)
                      |-+.+.-++.++.+..|..||- .++..-+..  .....-+++|..+++.+++.+-..+.+.+||+........... .|
T Consensus        42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~  118 (615)
T KOG2247|consen   42 WRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS  118 (615)
T ss_pred             EecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence            4566666888888888888884 444444433  2233445899999987888888999999999976542111111 12


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~Las  139 (568)
                      ....  +.|++....++.+...|.+.+|+..+.+.+...+ |..++.++++.+.+..+..
T Consensus       119 s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  119 SKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             hHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            2222  6788888888888899999999998877766665 8899999999987655443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.87  E-value=3.6  Score=47.46  Aligned_cols=49  Identities=20%  Similarity=0.437  Sum_probs=35.2

Q ss_pred             EEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356           18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus        18 V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      |+||+. .|+.+..+.-.|...| .+.|+.+..  |++...||++++|++.+.
T Consensus        66 I~If~~-sG~lL~~~~w~~~~lI-~mgWs~~ee--LI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   66 IRIFNI-SGQLLGRILWKHGELI-GMGWSDDEE--LICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             EEEEec-cccchHHHHhcCCCee-eecccCCce--EEEEeccceEEEeecchh
Confidence            666775 5666655554455555 489998875  777799999999998543

>PHA02713 hypothetical protein; Provisional

Probab=91.82  E-value=1.5  Score=49.77  Aligned_cols=142  Identities=9%  Similarity=0.102  Sum_probs=74.9

Q ss_pred             CCCEEEEEECCC-----cEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-----------------
Q 008356            5 KDEHLASISLSG-----DLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----------------   60 (568)
Q Consensus         5 dG~~LasGs~DG-----~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-----------------   60 (568)
                      +|+..+.||.++     .|..||..+.+-.  ..+... ......+.  -++. +.+.|+.++                 
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~--~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCV--LDQY-IYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEE--ECCE-EEEEeCCCcccccccccccccccccc
Confidence            456667777654     4788998765422  122111 11111122  2344 777777653                 


Q ss_pred             ------eEEEEECCCCCceeEEeccC-CCCeE-EEEEcCCCCEEEEEeCC------CeEEEEECCC-Cceee--EeecCC
Q 008356           61 ------TLHLWDTTGRSPKVSWLKQH-SAPTA-GISFSSDDKIIASVGLD------KKLYTYDPGS-RRPSS--CITYEA  123 (568)
Q Consensus        61 ------tV~VWDl~t~~~~v~~l~~H-~~~Vt-slafsPdg~~LaSgs~D------GtV~IWDlrt-~~~v~--~~~h~~  123 (568)
                            .|..||..+.+  ...+..- ..... +++. -++++.+.|+.+      ..|..||.++ .+-..  .+....
T Consensus       427 ~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNI--WETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             cccccceEEEECCCCCe--EeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                  47778877654  2222211 11111 1222 256777777754      2467899887 44332  222221


Q ss_pred             -CeEEEEEecCCCEEEEEEcCC--eEEEEECCCCC
Q 008356          124 -PFSSLAFIDDDWILTAGTSNG--RVVFYDIRGKP  155 (568)
Q Consensus       124 -~ItsLafsPdg~~LasGs~DG--~V~VWDlrt~~  155 (568)
                       ....+++  ++++.++|+.++  .+..||+.+.+
T Consensus       504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence             2222222  578888999888  67888888763

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.78  E-value=13  Score=39.10  Aligned_cols=148  Identities=18%  Similarity=0.209  Sum_probs=91.3

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCe------EEEEECCCC--C-cee-----EEeccCCC--------CeEEEEEcCCC
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGT------LHLWDTTGR--S-PKV-----SWLKQHSA--------PTAGISFSSDD   93 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGt------V~VWDl~t~--~-~~v-----~~l~~H~~--------~VtslafsPdg   93 (568)
                      .-+.++.|.+.+++. .+++.+++|.      ++.+++...  . ..+     ..+..-.+        ..-+|++.+++
T Consensus        18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            345678899997555 5777788888      766666431  1 001     11111111        34478886688


Q ss_pred             CEEEEEeCC------CeEEEEECCCCceeeEe----------------ecCCCeEEEEEecCCCEEEEEEcC-----C--
Q 008356           94 KIIASVGLD------KKLYTYDPGSRRPSSCI----------------TYEAPFSSLAFIDDDWILTAGTSN-----G--  144 (568)
Q Consensus        94 ~~LaSgs~D------GtV~IWDlrt~~~v~~~----------------~h~~~ItsLafsPdg~~LasGs~D-----G--  144 (568)
                      .++++--.+      ..|+.+|.. ++.+..+                .....+..|+++|+|+.|+++.+.     +  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888887777      789999976 5543332                134468899999999977665442     2  


Q ss_pred             ---------eEEEEECCCCCCceEEEeec-C------CCCCeeEEEEccCCCeEEEe
Q 008356          145 ---------RVVFYDIRGKPQPLTVLRAC-S------SSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       145 ---------~V~VWDlrt~~~~v~~l~~~-~------h~~~VtsLafspdg~~Las~  185 (568)
                               .|..||......+...+... .      ....|..+.+-+++++++..
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                     23445554422222322211 1      34678889999999888876

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.32  E-value=7.3  Score=41.67  Aligned_cols=136  Identities=13%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             CccCCCCEEEEEE-----------CCC-cEEEEECCC--Cc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356            1 MYNCKDEHLASIS-----------LSG-DLILHNLAS--GA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL   64 (568)
Q Consensus         1 afSpdG~~LasGs-----------~DG-~V~VWDl~t--g~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~V   64 (568)
                      +|.++|+++++-.           ..+ .|.+++-.+  |+  ....+.. .-...+.|++.+++  ++++ ......++
T Consensus        20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~-~~~~i~~~   95 (367)
T TIGR02604        20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVA-TPPDILFL   95 (367)
T ss_pred             eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEe-CCCeEEEE
Confidence            4677888766542           223 677776443  33  2233332 22345678888876  4443 44443334


Q ss_pred             EECCCC-----Cc--eeEEecc----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEECCCCc
Q 008356           65 WDTTGR-----SP--KVSWLKQ----HSAPTAGISFSSDDKIIASVGLD-------------------KKLYTYDPGSRR  114 (568)
Q Consensus        65 WDl~t~-----~~--~v~~l~~----H~~~VtslafsPdg~~LaSgs~D-------------------GtV~IWDlrt~~  114 (568)
                      .|.+..     +.  .+..+..    +....+.++|.||+++.++.+..                   +.|.-+|..+++
T Consensus        96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~  175 (367)
T TIGR02604        96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK  175 (367)
T ss_pred             eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence            455321     11  1111222    13447889999999877765521                   345555554443


Q ss_pred             eeeEeec-CCCeEEEEEecCCCEEEEEE
Q 008356          115 PSSCITY-EAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus       115 ~v~~~~h-~~~ItsLafsPdg~~LasGs  141 (568)
                      . ..+.. -.....++|+++|+++++-.
T Consensus       176 ~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       176 L-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             E-EEEecCcCCCccceECCCCCEEEEcc
Confidence            2 22222 22345778888877766543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.22  E-value=5.8  Score=46.53  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=57.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------Cce---eeEe---------ecCCCeEEEEEecC---CCE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGS----------RRP---SSCI---------TYEAPFSSLAFIDD---DWI  136 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt----------~~~---v~~~---------~h~~~ItsLafsPd---g~~  136 (568)
                      -.|..|.++++|++++..|..+ |.|..+..          ++.   .+.+         .....|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4588899999999999999877 44444421          111   1111         13346889999996   589


Q ss_pred             EEEEEcCCeEEEEECCCCCCceEEEe
Q 008356          137 LTAGTSNGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~~~v~~l~  162 (568)
                      |++=..|+.+++||+.....+..++.
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEEE
Confidence            99999999999999987666666554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.57  E-value=15  Score=38.39  Aligned_cols=135  Identities=12%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCce---eEEeeCC-CCCcEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCC
Q 008356            5 KDEHLASISLS-----GDLILHNLASGAK---AAELKDP-NEQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGR   70 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~~---v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~-----DGtV~VWDl~t~   70 (568)
                      ++.+++.|+.+     ..+..||+.+.+.   ...+..- ....-.+++.. ++ ++++.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCC
Confidence            34555666654     3567777765542   1122110 11111122222 34 36777764     235888898766


Q ss_pred             CceeEEecc--CCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCceeeEeec---CCCe---EEE-EEecCCCEE
Q 008356           71 SPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCITY---EAPF---SSL-AFIDDDWIL  137 (568)
Q Consensus        71 ~~~v~~l~~--H~~~VtslafsPdg~~LaSgs~DG----tV~IWDlrt~~~v~~~~h---~~~I---tsL-afsPdg~~L  137 (568)
                      +  ...+..  ........+..-++++.+.|+.++    .+.+||+++.+-...-..   ..+.   ... +...+++++
T Consensus       150 ~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy  227 (323)
T TIGR03548       150 E--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL  227 (323)
T ss_pred             C--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence            5  222221  111222222233677778887664    356889887653322111   1111   111 122356788


Q ss_pred             EEEEcC
Q 008356          138 TAGTSN  143 (568)
Q Consensus       138 asGs~D  143 (568)
                      +.|+.+
T Consensus       228 v~GG~~  233 (323)
T TIGR03548       228 CIGGFN  233 (323)
T ss_pred             EECCcC
Confidence            888765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.52  E-value=7.5  Score=39.49  Aligned_cols=101  Identities=14%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEE-CCCCCCce
Q 008356           83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD-IRGKPQPL  158 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs---~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWD-lrt~~~~v  158 (568)
                      .+...+++++++.++...   ....|+++....  ..........+..-.|++++...++...+...+++. ........
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            688899999999887766   333566655433  233322445788889999988888877777777774 22222111


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ..+....-.+.|..+.++|||..++.-
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v  129 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVV  129 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEE
Confidence            222222222289999999999887655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02790 Kelch-like protein; Provisional

Probab=90.46  E-value=13  Score=41.42  Aligned_cols=139  Identities=13%  Similarity=0.038  Sum_probs=68.9

Q ss_pred             CCEEEEEECCC-----cEEEEECCCCceeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEE
Q 008356            6 DEHLASISLSG-----DLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         6 G~~LasGs~DG-----~V~VWDl~tg~~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~   76 (568)
                      +..+++||.++     .+..||..+++...  .+.. ...... ++ .-++ .+.+.|+.+  ..+..||...+.  ...
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~~-~v-~~~~-~iYviGG~~~~~sve~ydp~~n~--W~~  345 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYAS-GV-PANN-KLYVVGGLPNPTSVERWFHGDAA--WVN  345 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcce-EE-EECC-EEEEECCcCCCCceEEEECCCCe--EEE
Confidence            34556676543     46778877654322  1211 111111 22 2244 477788764  358888876543  222


Q ss_pred             eccCCCCeEEEE-EcCCCCEEEEEeCCC---eEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           77 LKQHSAPTAGIS-FSSDDKIIASVGLDK---KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        77 l~~H~~~Vtsla-fsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      +..-..+....+ ..-+++..+.||.++   .+..||.++.+-...-.  ....-.+++ .-++++.+.|   |.+.+||
T Consensus       346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~yd  421 (480)
T PHA02790        346 MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYC  421 (480)
T ss_pred             CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEec
Confidence            222221221111 122677778887654   47788987764332211  111111222 2346666666   4578899


Q ss_pred             CCCC
Q 008356          151 IRGK  154 (568)
Q Consensus       151 lrt~  154 (568)
                      +++.
T Consensus       422 p~~~  425 (480)
T PHA02790        422 ESSN  425 (480)
T ss_pred             CCCC
Confidence            8765

>PLN02153 epithiospecifier protein

Probab=90.22  E-value=22  Score=37.45  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             eEEEEEeCC-----CeEEEEECCCCCceeEEeccC-----C-CCeEEEEEcCCCCEEEEEeCC-----------CeEEEE
Q 008356           51 HLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQH-----S-APTAGISFSSDDKIIASVGLD-----------KKLYTY  108 (568)
Q Consensus        51 ~lLaTgs~D-----GtV~VWDl~t~~~~v~~l~~H-----~-~~VtslafsPdg~~LaSgs~D-----------GtV~IW  108 (568)
                      .+++.|+.+     ..|.+||..+.+  ...+...     . ......+..-++++++.|+.+           ..|.+|
T Consensus        87 ~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         87 KLYIFGGRDEKREFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             EEEEECCCCCCCccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            477777754     357888987654  2222211     1 111111122256677777754           257788


Q ss_pred             ECCCCceeeEeec----CCCe-EEEEEecCCCEEEEEEcC-------------CeEEEEECCCC
Q 008356          109 DPGSRRPSSCITY----EAPF-SSLAFIDDDWILTAGTSN-------------GRVVFYDIRGK  154 (568)
Q Consensus       109 Dlrt~~~v~~~~h----~~~I-tsLafsPdg~~LasGs~D-------------G~V~VWDlrt~  154 (568)
                      |..+.+-...-..    .... .+++. -++++++.|+.+             ..|.+||+.+.
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~  227 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG  227 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence            9887643322111    1111 12222 245666665432             45888998865

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.19  E-value=8.6  Score=35.55  Aligned_cols=110  Identities=17%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc--------eeEEeeCCCCCcEEEEEEcc----CCCeEEEEEeCCCeEEEEECCCCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSR----NSRHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~--------~v~~l~~~h~~~Vs~Lafsp----dg~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      ...-.|+.+..-|+|.|++.....        .+..+.  -...|++|+--+    ++...|+.|+. ..|..||+..+.
T Consensus         8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~   84 (136)
T PF14781_consen    8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS   84 (136)
T ss_pred             CCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence            334568888999999999876332        334443  345566665443    23336666655 678899998776


Q ss_pred             ceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeE
Q 008356           72 PKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSC  118 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~~v~~  118 (568)
                      .  ...+.-.+.|+++.+-.   ...-++..+.+..|.-||.+..+....
T Consensus        85 d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   85 D--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             h--hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            3  33445557788888743   234455566677788888776555444

>PHA03098 kelch-like protein; Provisional

Probab=89.96  E-value=7.9  Score=43.39  Aligned_cols=143  Identities=13%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 008356            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK   73 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D------GtV~VWDl~t~~~~   73 (568)
                      +++.++.||.+     ..+..||..+.+-...-.-+....-.+++. -++ ++++.|+.+      ..+..||..+..  
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~--  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNK--  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCe--
Confidence            45566777765     347778876654221111011111111222 234 477777732      458899987654  


Q ss_pred             eEEeccCCCC--eEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeeEe--ecC-CCeEEEEEecCCCEEEEE
Q 008356           74 VSWLKQHSAP--TAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCI--TYE-APFSSLAFIDDDWILTAG  140 (568)
Q Consensus        74 v~~l~~H~~~--VtslafsPdg~~LaSgs~D--------GtV~IWDlrt~~~v~~~--~h~-~~ItsLafsPdg~~LasG  140 (568)
                      ...+.....+  -.++.. -+++.++.|+.+        ..+.+||..+++-...-  ... .....+.+  ++++++.|
T Consensus       418 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G  494 (534)
T PHA03098        418 WSKGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVG  494 (534)
T ss_pred             eeecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEc
Confidence            2222111111  112222 256666777643        23889998876543221  111 11122222  56777777


Q ss_pred             EcC-----CeEEEEECCCC
Q 008356          141 TSN-----GRVVFYDIRGK  154 (568)
Q Consensus       141 s~D-----G~V~VWDlrt~  154 (568)
                      +.+     ..|.+||+.+.
T Consensus       495 G~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcCCcccceeEEEeCCCC
Confidence            654     46888888765

>PRK10115 protease 2; Provisional

Probab=89.92  E-value=43  Score=39.21  Aligned_cols=112  Identities=7%  Similarity=0.050  Sum_probs=68.7

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEE
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYT  107 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D------GtV~I  107 (568)
                      -.+..+.|+|+++.++++...+|    .|++.|+.++......+..   .-..++|.+|++.|+....+      ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999995555544444    5889999876522222221   11569999988877666432      36888


Q ss_pred             EECCCC--ceeeEee-cCCCeEEEEE-ecCCCEEEEEEc---CCeEEEEECC
Q 008356          108 YDPGSR--RPSSCIT-YEAPFSSLAF-IDDDWILTAGTS---NGRVVFYDIR  152 (568)
Q Consensus       108 WDlrt~--~~v~~~~-h~~~ItsLaf-sPdg~~LasGs~---DG~V~VWDlr  152 (568)
                      +++.++  +...++. .........+ ..++++++....   ++.+.+|+..
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            899887  3333443 2333432333 337777766543   4568899854

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.58  E-value=27  Score=41.39  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=85.3

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE-------------EEEEcc--CCCeEEEEEeC----------CC
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-------------VLDYSR--NSRHLLVTAGD----------DG   60 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs-------------~Lafsp--dg~~lLaTgs~----------DG   60 (568)
                      +++|+.+..|+.|.-.|.++|+.+..+..  ++.|.             .+.-.|  .+. .+++|+.          +|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G  336 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSG  336 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCc
Confidence            45788898999999999999998876542  11110             000001  122 4555542          68


Q ss_pred             eEEEEECCCCCceeEEeccC--------CCC--------e-EEEEEcCCCCEEEEEe------------------CCCeE
Q 008356           61 TLHLWDTTGRSPKVSWLKQH--------SAP--------T-AGISFSSDDKIIASVG------------------LDKKL  105 (568)
Q Consensus        61 tV~VWDl~t~~~~v~~l~~H--------~~~--------V-tslafsPdg~~LaSgs------------------~DGtV  105 (568)
                      .|+-+|..+++.....-...        .+.        + ..+.++++..+++.+.                  ..+.|
T Consensus       337 ~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl  416 (764)
T TIGR03074       337 VIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL  416 (764)
T ss_pred             EEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence            89999999888443322111        000        1 2234444434433321                  23467


Q ss_pred             EEEECCCCceeeEeec-CC---------CeEEEEEec-CCC---EEEEEEcCCeEEEEECCCCC
Q 008356          106 YTYDPGSRRPSSCITY-EA---------PFSSLAFID-DDW---ILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       106 ~IWDlrt~~~v~~~~h-~~---------~ItsLafsP-dg~---~LasGs~DG~V~VWDlrt~~  155 (568)
                      .-.|.++++.+..++. ..         ...-+.+.. +|+   .++.+.++|.++++|.++++
T Consensus       417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            7788888888766632 11         111122322 453   78889999999999999885

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.41  E-value=20  Score=42.38  Aligned_cols=114  Identities=14%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCC----------CeEEEEEcCCCCEEEEEeCCC
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSA----------PTAGISFSSDDKIIASVGLDK  103 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~----~~~v~~l~~H~~----------~VtslafsPdg~~LaSgs~DG  103 (568)
                      ....+++|+|.....||+....|...|||+...    .........+.+          .-..+.|.++.+.|+.++.. 
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-
Confidence            456779999988778999999999999999211    111222211222          23478898888888877754 


Q ss_pred             eEEEEECCCCceee-Ee--ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 008356          104 KLYTYDPGSRRPSS-CI--TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       104 tV~IWDlrt~~~v~-~~--~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+.++|+++..... ..  .....|..+.-++.  +..++.  ....|...|+...
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~  278 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS  278 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence            58999999876533 22  35567888988886  333333  3367888888774

These proteins are found in fungi.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.81  E-value=16  Score=36.44  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             CCCEEEEEEC--CCcEEEEECCCCceeEEeeCCC----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            5 KDEHLASISL--SGDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         5 dG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h----~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|.++.+.+.  ...|++||+.+|+.+.+..-..    .+.++.     -++.+..-.-.+|...+||.++-++.-+.-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence            3445555544  3479999999998876654321    222222     2333444456788888999877653222111


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR  114 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~  114 (568)
                        .+.=..+  ..|++.|+.+....+++.-|.++-.
T Consensus       130 --~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         130 --EGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             --CCcceee--ecCCcceEeeCCceEEEecCHHHhh
Confidence              2222333  3456667777777788888876543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.64  E-value=35  Score=35.94  Aligned_cols=204  Identities=14%  Similarity=0.122  Sum_probs=110.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC------CC-ceeEEeeCC----CCCcEEEEEEccCCC-----------eEEEEEeC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA------SG-AKAAELKDP----NEQVLRVLDYSRNSR-----------HLLVTAGD   58 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~------tg-~~v~~l~~~----h~~~Vs~Lafspdg~-----------~lLaTgs~   58 (568)
                      +|+|.+.+-++....+...+||..      .. .++..+...    .....+.+.|+....           ..|+.+++
T Consensus        29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE  108 (336)
T TIGR03118        29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE  108 (336)
T ss_pred             EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence            467777666666677889999986      12 223333321    123456666664322           23677899


Q ss_pred             CCeEEEEECCCCCc----eeEEeccC-CCCe-EEEEEcC--CCCEEEEEe-CCCeEEEEECCCCceeeE--ee------c
Q 008356           59 DGTLHLWDTTGRSP----KVSWLKQH-SAPT-AGISFSS--DDKIIASVG-LDKKLYTYDPGSRRPSSC--IT------Y  121 (568)
Q Consensus        59 DGtV~VWDl~t~~~----~v~~l~~H-~~~V-tslafsP--dg~~LaSgs-~DGtV~IWDlrt~~~v~~--~~------h  121 (568)
                      ||+|.-|.-.-...    ....+... ...| ..+++..  .+.+|+.+. ..++|.+||-.-.+....  +.      .
T Consensus       109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag  188 (336)
T TIGR03118       109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG  188 (336)
T ss_pred             CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence            99999998532221    12222211 2333 3455543  345555544 677888888543322100  00      0


Q ss_pred             CCC-----------eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          122 EAP-----------FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       122 ~~~-----------ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      ..+           |+-..-.++.+.=+.|-.-|.|-+||+...  .++.+...+.-...+.|+..|..      ...-.
T Consensus       189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~------FG~~s  260 (336)
T TIGR03118       189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPES------FGSLS  260 (336)
T ss_pred             CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhh------hCCCC
Confidence            011           111111222222233444578999998875  33444433444556677776621      12345


Q ss_pred             CeEEEEecCCCcEEcCCCCCCC
Q 008356          191 ETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.+|+..-.||+|..||.....
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCc
Confidence            6788888889999999987544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.43  E-value=29  Score=37.93  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc----eeEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008356           32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP----KVSWLKQ--HSAPTAGISFSSDDKIIASVGLDKKL  105 (568)
Q Consensus        32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~----~v~~l~~--H~~~VtslafsPdg~~LaSgs~DGtV  105 (568)
                      +.......+..+.|.+++. ++ .++.+|.+..= .+.+..    .......  ....+.++.|.+++. ++.++.+|.+
T Consensus       275 ~~~~~~~~l~~v~~~~dg~-l~-l~g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v  350 (398)
T PLN00033        275 HNRASARRIQNMGWRADGG-LW-LLTRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGIL  350 (398)
T ss_pred             ecCCCccceeeeeEcCCCC-EE-EEeCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcE
Confidence            3333456678899998887 44 44567776543 333220    1122221  223488899986655 5556677866


Q ss_pred             EEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356          106 YTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus       106 ~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                      .... ..++.-...    .....+..+.|.++++.+++| .+|.|.-|
T Consensus       351 ~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        351 LRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             EEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            5543 334332222    234568899998776665555 56776655

>PRK13684 Ycf48-like protein; Provisional

Probab=88.41  E-value=37  Score=35.93  Aligned_cols=144  Identities=15%  Similarity=0.145  Sum_probs=75.8

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      ....+.++.+.+++.  ++..+..|.+..-.-..++.-......-...++++.+.++++.+++ +..|.+++=....+..
T Consensus       171 ~~g~~~~i~~~~~g~--~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s  247 (334)
T PRK13684        171 AAGVVRNLRRSPDGK--YVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES  247 (334)
T ss_pred             CcceEEEEEECCCCe--EEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence            345678899998875  4455566765432112222111112233467899999998887665 4567665433333332


Q ss_pred             eeEee-----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEEe
Q 008356          116 SSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       116 v~~~~-----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~-~~h~~~VtsLafspdg~~Las~  185 (568)
                      -....     ....+..+.+.+++..+++| .+|.|. ...+.++ ..+.... ..-....+.+.|..+++.++.+
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G  320 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG  320 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC-CCeECCcCCCCCcceEEEEEeCCCceEEEC
Confidence            22111     12357888999887765554 567554 3444432 2222221 1122346677776655444444

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=88.38  E-value=21  Score=43.55  Aligned_cols=185  Identities=12%  Similarity=0.119  Sum_probs=100.5

Q ss_pred             ECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc-------CC-CeEEEEEe-----C----CCeEEEEECCC-----C
Q 008356           13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-------NS-RHLLVTAG-----D----DGTLHLWDTTG-----R   70 (568)
Q Consensus        13 s~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp-------dg-~~lLaTgs-----~----DGtV~VWDl~t-----~   70 (568)
                      +....|.+.+.++++.+..+.-...+.+.+++..-       .+ +-+|++|.     +    -|.++|||+-.     +
T Consensus      1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred             cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence            34455677776666665555443455555555421       11 22566653     2    38899999822     2


Q ss_pred             C------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeeEeecCCCeEEEEEecCCCEEEEEEcC
Q 008356           71 S------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        71 ~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDl-rt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D  143 (568)
                      +      .+....+...+.|..++=. +|.+ +++ ...+|.+|++ +....+-+--.+-++......--+++|+.|.--
T Consensus      1081 kP~t~~KlKel~~eE~KGtVsavceV-~G~l-~~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ 1157 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVCEV-RGHL-LSS-QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVM 1157 (1366)
T ss_pred             CCcccceeeeeehhhcccceEEEEEe-ccEE-EEc-cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhh
Confidence            1      1122334566777776644 4544 333 3457999999 444443322233334333333346778888777


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ..|.+.-.+........+..-...-.+.++.|--+|          ....++.+..|+.|.+|-..|
T Consensus      1158 ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg----------~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1158 KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDG----------SNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred             hceEEEEEccCceEEEEeecCCchhhceeeeeEEcC----------CeeEEEEEcCCCcEEEEEeCC
Confidence            777777666543323333211222346667766554          334556666788888875444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.74  E-value=20  Score=42.18  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             cEEEEEEccCCCeEEEEEeCCCeEEEEECC----------CCCceeEE----------eccCCCCeEEEEEcCC---CCE
Q 008356           39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----------GRSPKVSW----------LKQHSAPTAGISFSSD---DKI   95 (568)
Q Consensus        39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~----------t~~~~v~~----------l~~H~~~VtslafsPd---g~~   95 (568)
                      .|..|.++++|. +++..+..|.+.+ .+.          .+...+.+          ...+...|..+.|+|.   +.+
T Consensus        86 ~v~~i~~n~~g~-~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGS-LLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCC-EEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            477788999998 5666666554433 331          11111111          1134567999999994   689


Q ss_pred             EEEEeCCCeEEEEECCCC
Q 008356           96 IASVGLDKKLYTYDPGSR  113 (568)
Q Consensus        96 LaSgs~DGtV~IWDlrt~  113 (568)
                      |+.-..|+++++||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.60  E-value=2.1  Score=31.63  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             CCeEEEEEecCC---CEEEEEEcCCeEEEEECCC
Q 008356          123 APFSSLAFIDDD---WILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       123 ~~ItsLafsPdg---~~LasGs~DG~V~VWDlrt  153 (568)
                      +.|++++|+|+.   .+|+..-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   5888888899999999995

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.82  E-value=3.7  Score=40.92  Aligned_cols=65  Identities=11%  Similarity=0.108  Sum_probs=46.3

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeeEe---------------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           89 FSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        89 fsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---------------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      +..+++++++...+|.+++||+.+++.+..-               .....|..+.+..+|.-|++- .+|..+.||...
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence            3346888999999999999999987654321               133557778888777665544 457788887765


Q ss_pred             C
Q 008356          154 K  154 (568)
Q Consensus       154 ~  154 (568)
                      .
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.71  E-value=15  Score=34.02  Aligned_cols=109  Identities=12%  Similarity=0.115  Sum_probs=68.0

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Q 008356           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPTAGISFSS-----DDKIIASVGLDKKLYTYDP  110 (568)
Q Consensus        43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------~v~~l~~H~~~VtslafsP-----dg~~LaSgs~DGtV~IWDl  110 (568)
                      -+|..... .|+++..-|+|.|++......       .+..+. -...|++++--+     +...|+.|+ ...|..||+
T Consensus         4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            45666666 578888889999998753321       122222 345577776433     234555555 556999999


Q ss_pred             CCCceeeEeecCCCeEEEEEec---CCCEEEEEEcCCeEEEEECCCC
Q 008356          111 GSRRPSSCITYEAPFSSLAFID---DDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       111 rt~~~v~~~~h~~~ItsLafsP---dg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ....-+......+.++++.+-.   ...-|+..+.+..|.-||.+..
T Consensus        81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            9877665555667788887743   1233444445677777777665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.66  E-value=55  Score=36.02  Aligned_cols=145  Identities=12%  Similarity=0.107  Sum_probs=89.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCc-----eeEEeeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCC------
Q 008356            5 KDEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGR------   70 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h~~~Vs~Lafsp---dg~~lLaTgs~DGtV~VWDl~t~------   70 (568)
                      +...|++|+..|.++||+.....     .+-+.+  -+.+|-.|+.-+   ..+.+.++.-.-..+.||.+...      
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            34689999999999999985433     222332  345666666543   22223444467788889988221      


Q ss_pred             --CceeEEeccCCC--CeEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE
Q 008356           71 --SPKVSWLKQHSA--PTAGISFSS----D-DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        71 --~~~v~~l~~H~~--~VtslafsP----d-g~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs  141 (568)
                        ...+..+..|.-  ....+++-|    . ..+|++-+.||.+.+|+-+.-.....+..---...++|.+.-..|++++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence              122344444532  233344433    2 4678888999999999976544333333222234567888778888888


Q ss_pred             cCCeEEEEEC
Q 008356          142 SNGRVVFYDI  151 (568)
Q Consensus       142 ~DG~V~VWDl  151 (568)
                      .+..|..|..
T Consensus       194 ss~~l~~Yky  203 (418)
T PF14727_consen  194 SSWTLECYKY  203 (418)
T ss_pred             CceeEEEecH
Confidence            8888888865

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.75  E-value=9.6  Score=41.91  Aligned_cols=133  Identities=11%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             CCEEEEEECCCcEEEEECCC--CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---eEEeccC
Q 008356            6 DEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQH   80 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~t--g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~---v~~l~~H   80 (568)
                      .+..+.+-..|.+.=|.+..  ......+.-..++.|.+++|++|.+ +++.--.++.|.+++....+.+   .+..+..
T Consensus        33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k  111 (657)
T KOG2377|consen   33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK  111 (657)
T ss_pred             CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence            33344444555566666542  2333444444567999999999987 8888889999999998554432   2333444


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecCCCEEEEEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg~~LasGs  141 (568)
                      ...|....|..+ .-++.....| +-+|.+... +.++.. .+...|.=..|.++-+.++.++
T Consensus       112 ~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  112 NANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             cceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            556899999855 5566666555 455543322 222222 4566666677777665544443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.58  E-value=21  Score=39.34  Aligned_cols=137  Identities=15%  Similarity=0.177  Sum_probs=87.1

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC  118 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~  118 (568)
                      +.+-|...+++++++  ..|.+.=|-+....  ..........++|.++.|++|.+.|++--.|.+|.+++....+....
T Consensus        26 ngvFfDDaNkqlfav--rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV--RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeeccCcceEEEE--ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            345555555533333  34555566654332  22334444567999999999999999999999999999854433322


Q ss_pred             e--e---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356          119 I--T---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       119 ~--~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~La  183 (568)
                      .  .   ....|...+|..+ .-+|.....| |-+|.+...++.++...  .|...|.-..|.++-+.+.
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEe
Confidence            2  1   2334888999876 5566655544 77777766555555555  5667788788888755543

>PLN02153 epithiospecifier protein

Probab=84.57  E-value=44  Score=35.08  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             CCEEEEEECC-----CcEEEEECCCCcee--EEeeC---CCCCcEEEEEEccCCCeEEEEEeCC-----------CeEEE
Q 008356            6 DEHLASISLS-----GDLILHNLASGAKA--AELKD---PNEQVLRVLDYSRNSRHLLVTAGDD-----------GTLHL   64 (568)
Q Consensus         6 G~~LasGs~D-----G~V~VWDl~tg~~v--~~l~~---~h~~~Vs~Lafspdg~~lLaTgs~D-----------GtV~V   64 (568)
                      +++++.|+.+     ..|.+||+.+.+-.  ..+..   .....-.+++. -++ ++++.|+.+           ..|.+
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEEE
Confidence            4455566643     35778888664422  11110   11111222222 233 377777754           24778


Q ss_pred             EECCCCCceeEEeccCC----CC-eEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCceeeEeec----C
Q 008356           65 WDTTGRSPKVSWLKQHS----AP-TAGISFSSDDKIIASVGLD-------------KKLYTYDPGSRRPSSCITY----E  122 (568)
Q Consensus        65 WDl~t~~~~v~~l~~H~----~~-VtslafsPdg~~LaSgs~D-------------GtV~IWDlrt~~~v~~~~h----~  122 (568)
                      ||..+..  ...+....    .+ -.+++. -++++++.++.+             ..|.+||+.+.+-...-..    .
T Consensus       164 yd~~~~~--W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~  240 (341)
T PLN02153        164 YNIADGK--WVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS  240 (341)
T ss_pred             EECCCCe--EeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence            8887654  22222111    11 112222 255666655432             3588899887654332211    1


Q ss_pred             CCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCC
Q 008356          123 APFSSLAFIDDDWILTAGTSN--------------GRVVFYDIRGK  154 (568)
Q Consensus       123 ~~ItsLafsPdg~~LasGs~D--------------G~V~VWDlrt~  154 (568)
                      ......+..-++++++.|+..              ..|..||+.+.
T Consensus       241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            111111222246777777742              25777887654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.36  E-value=64  Score=38.30  Aligned_cols=141  Identities=10%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CCCcEEEEEEc---cC--CCeEEEEEeCCCeEEEEECC------CCC--------ceeEEec---cCCCCeEEEEEcC-C
Q 008356           36 NEQVLRVLDYS---RN--SRHLLVTAGDDGTLHLWDTT------GRS--------PKVSWLK---QHSAPTAGISFSS-D   92 (568)
Q Consensus        36 h~~~Vs~Lafs---pd--g~~lLaTgs~DGtV~VWDl~------t~~--------~~v~~l~---~H~~~VtslafsP-d   92 (568)
                      ...+|..|+|.   ..  .....+..-....+.|+...      ...        .++..+.   ....+..+++|+| +
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            45678888888   21  11123444555667777721      101        1122222   2344678899999 7


Q ss_pred             CCEEEEEeCCCeEEEEECCCC--c---eeeEe-ecCC----------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           93 DKIIASVGLDKKLYTYDPGSR--R---PSSCI-TYEA----------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        93 g~~LaSgs~DGtV~IWDlrt~--~---~v~~~-~h~~----------~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      .+.||.....|...|||+...  .   ..... ...+          ....+.|..+-+.|++++. ..+.++|+++...
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~  236 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ  236 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCc
Confidence            789999999999999999211  1   11111 1112          2347889888777777764 5789999998754


Q ss_pred             ceEEEeecCCCCCeeEEEEccC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRA  178 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspd  178 (568)
                      ... +........|..+.-++.
T Consensus       237 ~~~-l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  237 TEY-LVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             cch-hccCCChhheeeEEecCC
Confidence            221 222245567888887776

These proteins are found in fungi.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.34  E-value=3.8  Score=30.30  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=27.0

Q ss_pred             CcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCC
Q 008356           38 QVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus        38 ~~Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +.|++++|+|...  .+|+-+-..|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999997543  58888888999999999853

It contains a characteristic DLL sequence motif.

>PRK13684 Ycf48-like protein; Provisional

Probab=84.04  E-value=38  Score=35.83  Aligned_cols=143  Identities=11%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc---
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ---   79 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~---   79 (568)
                      .+++.++++ +..|.+..-.-..++.-..+.......+.++.+.++++ +++ .+..|.+++=..+.+.. ......   
T Consensus       181 ~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~-vg~~G~~~~~s~d~G~s-W~~~~~~~~  256 (334)
T PRK13684        181 SPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWM-LARGGQIRFNDPDDLES-WSKPIIPEI  256 (334)
T ss_pred             CCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEE-EecCCEEEEccCCCCCc-cccccCCcc
Confidence            455554444 44555443211223333334444566788899999887 444 45668765422333321 111111   


Q ss_pred             -CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           80 -HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        80 -H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                       ....+.++.+.+++.. +.++.+|.|.. ....++.-...    .....+..+.|..+++.++ .+..|.|.-|+-.
T Consensus       257 ~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~  331 (334)
T PRK13684        257 TNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS  331 (334)
T ss_pred             ccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence             1234788899887664 45566775543 33333332222    1223577788887766655 4456888877643

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=83.75  E-value=0.3  Score=56.80  Aligned_cols=110  Identities=10%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE-----------EEEEccCCCeEEEEEeCCCeEEEEECCC-CC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-----------VLDYSRNSRHLLVTAGDDGTLHLWDTTG-RS   71 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs-----------~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~   71 (568)
                      ++.-++..+..++.|++.++.+... ..++. |...+.           .-..+|||. .|+.+..||.++.|.+.- ++
T Consensus       193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  193 VNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             cccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence            4445666677788888877654322 22333 322222           223688998 899999999999988731 11


Q ss_pred             ---ceeEEeccCC-CCeEEEEEcCCC---------CEEEEE-eCCCeEEEEECCCCcee
Q 008356           72 ---PKVSWLKQHS-APTAGISFSSDD---------KIIASV-GLDKKLYTYDPGSRRPS  116 (568)
Q Consensus        72 ---~~v~~l~~H~-~~VtslafsPdg---------~~LaSg-s~DGtV~IWDlrt~~~v  116 (568)
                         ...+.++.|. .+-.|.-|+.+.         .+++++ ..+..+++|.....+|.
T Consensus       270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence               0134455665 333333233221         123333 34456778876655544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=83.58  E-value=55  Score=33.37  Aligned_cols=131  Identities=17%  Similarity=0.180  Sum_probs=81.0

Q ss_pred             CcEEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEE
Q 008356           38 QVLRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLY  106 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs----------~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSg-s~DGtV~  106 (568)
                      ...++-..+|+|+ + +.|.          ..|.++.|-....   +..+...-..-+.++|+.+.+.+... +.+-.|.
T Consensus       109 nR~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  109 NRLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             cccccCccCCCCc-e-eeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence            3456667889998 3 3332          1244555554433   22233334445789999877766544 5667887


Q ss_pred             EEE--CCCCcee-----eEeec----C-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEE
Q 008356          107 TYD--PGSRRPS-----SCITY----E-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC  174 (568)
Q Consensus       107 IWD--lrt~~~v-----~~~~h----~-~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLa  174 (568)
                      -||  +.+|...     ..+..    + -....+++.-+|++.++.-..++|...|+.+++. +..+..  ....|+++|
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-L~eikl--Pt~qitscc  260 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-LLEIKL--PTPQITSCC  260 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE-EEEEEc--CCCceEEEE
Confidence            787  5555322     11211    1 1234566677899999888999999999999854 444442  367789998


Q ss_pred             Ec
Q 008356          175 WQ  176 (568)
Q Consensus       175 fs  176 (568)
                      |-
T Consensus       261 Fg  262 (310)
T KOG4499|consen  261 FG  262 (310)
T ss_pred             ec
Confidence            84

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.17  E-value=17  Score=40.58  Aligned_cols=141  Identities=16%  Similarity=0.193  Sum_probs=87.6

Q ss_pred             CEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC-------eEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            7 EHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-------HLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         7 ~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~-------~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      .+|+ .|+....++-.|++.|+.+.+... +...  .+.|.|..+       +.|+--+ |..|.--|.+-...++. ..
T Consensus       480 sli~~dg~~~~kLykmDIErGkvveeW~~-~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~-v~  554 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIK-VV  554 (776)
T ss_pred             ceEEecCCCcccceeeecccceeeeEeec-CCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCcee-ee
Confidence            3443 355566788889999999988886 3333  367877532       2344334 44444445533222222 12


Q ss_pred             cCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           79 QHSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        79 ~H~~~VtslafsP----dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .....++.-.|+.    ...+|+.++..|.|++||--..+....+ .....|..+....+|+++++.+. ..+.+-|++-
T Consensus       555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence            2222333333432    4568999999999999996543333333 56778999999999998887765 5677878763

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.12  E-value=13  Score=41.35  Aligned_cols=131  Identities=16%  Similarity=0.162  Sum_probs=79.1

Q ss_pred             cCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCC-CceeeE
Q 008356           47 RNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGS-RRPSSC  118 (568)
Q Consensus        47 pdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-------~LaSgs~DGtV~IWDlrt-~~~v~~  118 (568)
                      .+..-++..|..-..++-.|+..++ .+..+..|..-  -+.|.|+.+       .-+.|-.+..|.-.|.|- +..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            3444334455566678778887776 36666767664  466776421       223444555666667764 333333


Q ss_pred             eecCCC-----eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356          119 ITYEAP-----FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       119 ~~h~~~-----ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      ......     ..|..-. ...++|+++..|-|++||--.. +....+.  +....|..+....+|+++++
T Consensus       554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~-rAKtalP--~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK-RAKTALP--GLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             eeehhccccccccccccc-cCceEEEecCCCceeeehhhcc-hhhhcCc--ccccceeeeEeecCCcEEEE
Confidence            332332     3333332 3568999999999999996543 2223333  55678899999998888644

>PHA02790 Kelch-like protein; Provisional

Probab=83.03  E-value=24  Score=39.28  Aligned_cols=139  Identities=14%  Similarity=0.041  Sum_probs=68.0

Q ss_pred             CCCEEEEEECC--CcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCCceeEEe
Q 008356            5 KDEHLASISLS--GDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         5 dG~~LasGs~D--G~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG---tV~VWDl~t~~~~v~~l   77 (568)
                      +|...++||.+  ..+..||..+++-.  ..+... .... +++ .-+++ +.+.|+.++   .+..||..+..  ....
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~-r~~~-~~~-~~~g~-IYviGG~~~~~~~ve~ydp~~~~--W~~~  391 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP-RCNP-AVA-SINNV-IYVIGGHSETDTTTEYLLPNHDQ--WQFG  391 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC-Cccc-EEE-EECCE-EEEecCcCCCCccEEEEeCCCCE--EEeC
Confidence            45556667653  35778887654322  122211 1111 122 22444 778877654   47788886654  2221


Q ss_pred             ccCCCC--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcC-----CeEEE
Q 008356           78 KQHSAP--TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSN-----GRVVF  148 (568)
Q Consensus        78 ~~H~~~--VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~D-----G~V~V  148 (568)
                      ..-..+  -.+++ .-+++..+.|+   .+.+||.++++-...-  .....-..++. -++++.++|+.+     ..|.+
T Consensus       392 ~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        392 PSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CCCCCccccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEE
Confidence            111111  11222 22455556553   5778998876543222  11111112222 256777888754     34777


Q ss_pred             EECCCC
Q 008356          149 YDIRGK  154 (568)
Q Consensus       149 WDlrt~  154 (568)
                      ||+.+.
T Consensus       467 Yd~~~~  472 (480)
T PHA02790        467 YNNRTY  472 (480)
T ss_pred             EECCCC
Confidence            777765

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.96  E-value=97  Score=37.67  Aligned_cols=158  Identities=15%  Similarity=0.171  Sum_probs=89.4

Q ss_pred             cEEEEECCCCceeEEeeCCCC---CcEEEEEEccCCCe-EEEEEe-----------CCCeEEEEECCCCCceeEEeccCC
Q 008356           17 DLILHNLASGAKAAELKDPNE---QVLRVLDYSRNSRH-LLVTAG-----------DDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~---~~Vs~Lafspdg~~-lLaTgs-----------~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      .|+++|..+++.++.+.-..+   -.+..+.|+..... ++++|.           .+|.++.|++-.....+..+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            488999888887766553222   23455666655443 333332           234577887733332333333222


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee--c-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--Y-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      -+-.-.+..|-..++++ +....+++||+...++++...  + ...|..+.+.  +..+++|...-.|+++-.+...+.+
T Consensus       934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence            22222445664444443 445689999999887766552  2 4456676665  6788888877777776665544444


Q ss_pred             EEEeecCCCCCeeEEEEcc
Q 008356          159 TVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafsp  177 (568)
                      ..+..-.-...|+++.+-.
T Consensus      1011 ~~fadD~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLD 1029 (1205)
T ss_pred             EEEeCCCccceeeEEEEec
Confidence            4444333345566666543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=82.75  E-value=64  Score=33.49  Aligned_cols=166  Identities=13%  Similarity=0.116  Sum_probs=93.1

Q ss_pred             cEEEEECCCCceeEEeeCC-----CCCcEEEEEEccCCC----eEEEEEe-CCCeEEEEECCCCCceeEEeccC------
Q 008356           17 DLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSR----HLLVTAG-DDGTLHLWDTTGRSPKVSWLKQH------   80 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~-----h~~~Vs~Lafspdg~----~lLaTgs-~DGtV~VWDl~t~~~~v~~l~~H------   80 (568)
                      +|.+||+.+++.++.+.-+     ....+..+.+.....    .+++.+. ..+-|.|||+.+++. .+.+..+      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcceecc
Confidence            7899999999988776543     245677788776321    2444443 446899999987652 2221111      


Q ss_pred             -------------CCCeEEEEEcC---CCCEEEEEeCCC-eEEEEEC---CCCc---------eeeEeecC-CCeEEEEE
Q 008356           81 -------------SAPTAGISFSS---DDKIIASVGLDK-KLYTYDP---GSRR---------PSSCITYE-APFSSLAF  130 (568)
Q Consensus        81 -------------~~~VtslafsP---dg~~LaSgs~DG-tV~IWDl---rt~~---------~v~~~~h~-~~ItsLaf  130 (568)
                                   ...+..++.+|   +++.|+.....+ .++-...   ++..         .+..++.. .....+++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                         12256666655   555666555443 2222221   1111         12233332 46778999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCC--ceEEEeecCC-CCCeeEEEEcc--CCCeEE
Q 008356          131 IDDDWILTAGTSNGRVVFYDIRGKPQ--PLTVLRACSS-SEAVSSLCWQR--AKPVFI  183 (568)
Q Consensus       131 sPdg~~LasGs~DG~V~VWDlrt~~~--~v~~l~~~~h-~~~VtsLafsp--dg~~La  183 (568)
                      +++|.++++--..+.|..|+.++...  ....+..-.. -..+..+.+.+  +|...+
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v  251 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV  251 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence            99999888888999999999987321  1223322222 46778888888  554433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.50  E-value=15  Score=45.15  Aligned_cols=140  Identities=21%  Similarity=0.297  Sum_probs=83.2

Q ss_pred             EECCCcEEEEECCCCceeEEeeCCCCCcEEEEE-------EccCCCeEEEEEeCCCeEEEEECC----CCCce----eEE
Q 008356           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLD-------YSRNSRHLLVTAGDDGTLHLWDTT----GRSPK----VSW   76 (568)
Q Consensus        12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~La-------fspdg~~lLaTgs~DGtV~VWDl~----t~~~~----v~~   76 (568)
                      ...|+.+.+|+.+++.....+.+-....+...-       |.+.=+++|+.+.. -.|.|+-+.    +....    ...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence            456889999999987766666652222222211       23334555555543 445555442    11100    112


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EECCCC---c-e-----------------eeEe-ecCCCeEEEEEec
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYT--YDPGSR---R-P-----------------SSCI-TYEAPFSSLAFID  132 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~I--WDlrt~---~-~-----------------v~~~-~h~~~ItsLafsP  132 (568)
                      +......|+|+....+|+.+++|- ||.|+-  |....+   + +                 .... .+..+|..+++..
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            223356688998776888776654 554432  222111   1 1                 0111 3567899999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCC
Q 008356          133 DDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       133 dg~~LasGs~DG~V~VWDlrt  153 (568)
                      ..+++.+-+..|.|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            889999999999999999986

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.44  E-value=7.1  Score=38.92  Aligned_cols=65  Identities=20%  Similarity=0.348  Sum_probs=41.6

Q ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCCceeEE------ec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 008356           46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------LK-------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS  112 (568)
Q Consensus        46 spdg~~lLaTgs~DGtV~VWDl~t~~~~v~~------l~-------~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt  112 (568)
                      ..++. ++++...+|.+++||+...+..+..      +.       .....|..+.+..+|.-|++-+ +|..+.||..-
T Consensus        19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            33455 6888899999999999877633221      11       2345567777776666666554 35667776543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.07  E-value=70  Score=33.51  Aligned_cols=40  Identities=13%  Similarity=0.143  Sum_probs=20.1

Q ss_pred             CeEEEEECCCCCceeEEeccCC--C-CeEEEEEcCCCCEEEEEeCC
Q 008356           60 GTLHLWDTTGRSPKVSWLKQHS--A-PTAGISFSSDDKIIASVGLD  102 (568)
Q Consensus        60 GtV~VWDl~t~~~~v~~l~~H~--~-~VtslafsPdg~~LaSgs~D  102 (568)
                      ..|.+||..+..  ...+....  . .-.+++ .-++++++.|+.+
T Consensus       168 ~~v~~YDp~t~~--W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQ--WRNLGENPFLGTAGSAIV-HKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCc--eeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence            468889987665  22222211  1 112222 2357777777753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.64  E-value=49  Score=35.17  Aligned_cols=144  Identities=13%  Similarity=0.031  Sum_probs=79.3

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC-Ce
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA-PT   84 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~-~V   84 (568)
                      ..+.++..+|.|.-+|.++++.+....... ...+..-.+..+|+  ++.++.++.++.+|..+++. +........ .+
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~~  145 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTL-VWSRNVGGSPYY  145 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcE-EEEEecCCCeEE
Confidence            455666788999999998888654333211 12222222333664  88889999899999876663 222222220 11


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCC----eEEEEEecCCCEEEEEEc--CCeEEEEECCCCC
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP----FSSLAFIDDDWILTAGTS--NGRVVFYDIRGKP  155 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~----ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~  155 (568)
                      ..-..- ....++.++.++.+...|-.+++.+........    +..--. -....++.+..  ++.+.-.|++.+.
T Consensus       146 ~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         146 ASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             ecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCc
Confidence            111111 233344444789999999998888766543321    111111 12334555555  5667777776653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=80.99  E-value=26  Score=35.01  Aligned_cols=101  Identities=11%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC------eEEEE---ECC--CCceee--E
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK------KLYTY---DPG--SRRPSS--C  118 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG------tV~IW---Dlr--t~~~v~--~  118 (568)
                      .|+.+...+.|.+|++.........-...-+.|..+.++..|++|++--.+.      .+|+|   +..  ...++.  .
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi  109 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI  109 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence            3444466788999999854444444444558899999999999999875432      45654   222  112211  1


Q ss_pred             ---------------------eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356          119 ---------------------ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus       119 ---------------------~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                                           ++....+.+++..|-..-|++|+ ++.+.||.+..
T Consensus       110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence                                 12345677888888544455555 46789998764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=80.55  E-value=18  Score=39.68  Aligned_cols=44  Identities=11%  Similarity=0.058  Sum_probs=36.5

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT  120 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~  120 (568)
                      +......+.+++.+|++++.++...-|.|.++|+.++..+++.+
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            33445568899999999999998888999999999988877763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	568
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-05

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 24  ASGAKAAELKDPNEQVLRVL-DYSRNSRHL--------LVTAGDDGTLHLWDTTGRSPKV 74
           AS  K  +L + N Q+L+ L  +S + R +        + +A DD T+ LW+  G+  + 
Sbjct: 362 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 421
Query: 75  SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD 134
             L  HS+   G++FS DD+ IAS   DK +  ++   +   +   + +    +AF  D 
Sbjct: 422 --LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 479
Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167
             + + + +  V  ++  G  Q L  L   SSS
Sbjct: 480 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSS 510

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	568
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.88
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.88
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.85
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.85
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.85
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.79
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.71
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.69
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.69
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.67
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.67
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.66
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.6
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.56
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.55
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.55
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.53
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.52
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.51
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.51
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.5
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.5
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.5
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.5
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.49
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.48
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.47
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.46
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.38
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.35
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.34
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.32
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.32
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.3
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.28
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.23
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.22
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.21
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.2
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.19
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.18
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.18
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.15
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.14
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.08
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.07
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.07
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.06
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.0
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.99
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.98
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.96
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.95
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.94
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.94
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.85
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.84
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.83
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.8
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.77
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.75
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.75
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.74
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.71
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.57
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.49
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.49
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.45
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.42
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.41
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.39
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.34
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.33
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.31
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.21
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.03
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.02
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.98
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.93
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.92
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.91
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.91
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.87
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.85
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.77
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.7
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.58
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.53
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.47
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.4
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.4
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.38
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.36
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.29
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.18
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.08
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.08
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.96
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.77
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.65
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.6
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.56
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.49
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.06
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.98
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.67
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.56
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.45
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.4
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.18
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.93
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.89
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.36
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.11
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.95
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.83
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.7
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.56
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.35
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.12
3ott_A	758	Two-component system sensor histidine kinase; beta	93.0
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.6
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.33
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.3
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.06
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.86
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.33
3ott_A	758	Two-component system sensor histidine kinase; beta	90.31
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.31
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.19
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.66
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.58
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.3
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	84.61
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	80.82

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.6e-28  Score=248.88  Aligned_cols=197  Identities=12%  Similarity=0.133  Sum_probs=171.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|+|||+.+++.+..+.. |...|.+++|+++++ +|++|+.|++|++||+.+++ .+..+.+|
T Consensus        20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~-~~~~~~~h   96 (304)
T 2ynn_A           20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGE-KVVDFEAH   96 (304)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCc-EEEEEeCC
Confidence            4899999999999999999999999999988886 677899999999998 89999999999999998887 46778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~-v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      ...|++++|+|++++|++++.|++|++||++++.. ...+ .|...|.+++|+| ++.+|++|+.|+.|++||++.....
T Consensus        97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            99999999999999999999999999999998744 3444 6899999999999 6799999999999999999887544


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .....  +|...|..++|.+.          .++.++++++.|+.|++||++...
T Consensus       177 ~~~~~--~~~~~v~~~~~~~~----------~~~~~l~s~s~D~~i~iWd~~~~~  219 (304)
T 2ynn_A          177 FTLTT--GQERGVNYVDYYPL----------PDKPYMITASDDLTIKIWDYQTKS  219 (304)
T ss_dssp             EEEEC--CCTTCEEEEEECCS----------TTCCEEEEEETTSEEEEEETTTTE
T ss_pred             ceecc--CCcCcEEEEEEEEc----------CCCCEEEEEcCCCeEEEEeCCCCc
Confidence            44333  57788999999873          244567777889999999987644

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=3e-28  Score=258.08  Aligned_cols=206  Identities=16%  Similarity=0.218  Sum_probs=178.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+++++ +|++|+.|++|++||+.+.+ .+..+.+|
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~-~~~~~~~h  191 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFE-CIRTMHGH  191 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSC-EEECCCCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-eeEEEcCC
Confidence            4899999999999999999999999999999987 777899999999998 89999999999999998876 46778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|.+++|+|++++|++++.|++|++||+++++++..+ .|...|.+++|++++.+|++|+.|+.|++||+++.. ...
T Consensus       192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~  270 (410)
T 1vyh_C          192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKA  270 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eee
Confidence            999999999999999999999999999999999988777 688899999999999999999999999999999874 334


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEec--------cCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDET--------TCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s--------~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .+.  +|...|.+++|+|++.+.....        ....+.++++++.|+.|++||++...
T Consensus       271 ~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          271 ELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             EEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             Eec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            444  7999999999999754421110        01135678889999999999987643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=9.2e-28  Score=242.03  Aligned_cols=195  Identities=19%  Similarity=0.265  Sum_probs=171.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|+||++.+++....+.+ |...|.+++|+|+++ +|++++.|+.|++||+.+.+ .+..+..|
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~-~~~~~~~~  106 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGK-CLKTLKGH  106 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCc-EEEEEcCC
Confidence            4899999999999999999999999998888876 777899999999997 89999999999999998877 46778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.||.|++||+++... +.
T Consensus       107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~  185 (312)
T 4ery_A          107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LK  185 (312)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-ee
Confidence            999999999999999999999999999999999888777 5888999999999999999999999999999998743 23


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .+. ..+...+..++|+|+++++++            ++.|+.|++||++...
T Consensus       186 ~~~-~~~~~~~~~~~~~~~~~~l~~------------~~~d~~i~iwd~~~~~  225 (312)
T 4ery_A          186 TLI-DDDNPPVSFVKFSPNGKYILA------------ATLDNTLKLWDYSKGK  225 (312)
T ss_dssp             EEC-CSSCCCEEEEEECTTSSEEEE------------EETTTEEEEEETTTTE
T ss_pred             EEe-ccCCCceEEEEECCCCCEEEE------------EcCCCeEEEEECCCCc
Confidence            322 256678999999997665544            4569999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=6e-28  Score=251.37  Aligned_cols=193  Identities=11%  Similarity=0.110  Sum_probs=164.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--c
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--K   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l--~   78 (568)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|++++..+|++++.|++|++||+++.+. ...+  .
T Consensus       134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~  211 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCS  211 (344)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC--
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecc
Confidence            4899999999999999999999999999999987 7788999999999977899999999999999988774 3333  3


Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCC
Q 008356           79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .|...+++++|+| ++++|++|+.|++|++||+++++++..+ .|...|.+++|+|++ ++|++|+.|+.|+|||+++.+
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence            4667799999999 6778999999999999999999988877 689999999999997 689999999999999998762


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                          .+...+|.+.|++++|+|+++.           ++++++.|+.|++|++..
T Consensus       292 ----~~~~~~H~~~V~~v~~sp~~~~-----------llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          292 ----LFRSQAHRDFVRDATWSPLNHS-----------LLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ----EEEECCCSSCEEEEEECSSSTT-----------EEEEEETTSCEEEEECCC
T ss_pred             ----EEEEcCCCCCEEEEEEeCCCCe-----------EEEEEcCCCeEEEEECCC
Confidence                3344589999999999997543           455567799999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=3.3e-27  Score=242.95  Aligned_cols=194  Identities=14%  Similarity=0.215  Sum_probs=169.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---~~v~~l   77 (568)
                      +|+|++++|++|+.||.|+|||+.+++.+..+.. |...|.+++|+|+++ +|++|+.|+.|++||+....   .....+
T Consensus        62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  139 (340)
T 1got_B           62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCC-EEEEEeCCCeEEEEECccCCCcceeEEEe
Confidence            4899999999999999999999999999888886 677889999999998 89999999999999997653   235567


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      .+|...|.++.|++++. |++++.|++|++||+++++.+..+ .|...|.+++|+|++++|++|+.|+.|++||++... 
T Consensus       140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-  217 (340)
T 1got_B          140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-  217 (340)
T ss_dssp             ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-
T ss_pred             cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-
Confidence            89999999999998664 899999999999999999988777 589999999999999999999999999999999873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ....+.  +|...|++++|+|++++|+            +++.|+.|++||++...
T Consensus       218 ~~~~~~--~h~~~v~~v~~~p~~~~l~------------s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          218 CRQTFT--GHESDINAICFFPNGNAFA------------TGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             EEEEEC--CCSSCEEEEEECTTSSEEE------------EEETTSCEEEEETTTTE
T ss_pred             eEEEEc--CCcCCEEEEEEcCCCCEEE------------EEcCCCcEEEEECCCCc
Confidence            444444  7999999999999765554            44669999999997644

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=1.9e-27  Score=241.06  Aligned_cols=199  Identities=14%  Similarity=0.236  Sum_probs=172.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|++++++|++|+.|+.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|++|++||+.........+.+|
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h  139 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence            3789999999999999999999999999999987 778899999999998 89999999999999998876566788999


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEec--CCCEEEEEEcCCeEEEEECCCCC
Q 008356           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsP--dg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ...|++++|+| ++.+|++|+.|++|++||+++......+  .+...+..++|.|  ++.+|++|+.|+.|+|||+++..
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~  219 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence            99999999999 7899999999999999999987766555  4667899999987  67899999999999999999873


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                       ++..+.  +|...|.+++|+|++++            |++++.|+.|++||++.......
T Consensus       220 -~~~~~~--~h~~~v~~~~~~p~~~~------------l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          220 -CVATLE--GHMSNVSFAVFHPTLPI------------IISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             -EEEEEE--CCSSCEEEEEECSSSSE------------EEEEETTSCEEEEETTTCCEEEE
T ss_pred             -cceeeC--CCCCCEEEEEECCCCCE------------EEEEcCCCeEEEEECCCCceeee
Confidence             445555  89999999999997654            45556799999999987665443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=3e-27  Score=242.54  Aligned_cols=190  Identities=17%  Similarity=0.272  Sum_probs=170.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++|+.||.|++||+++++....+.. +...|.+++|+|+++ +|++|+.||.|++||+.+++ .+..+.+|
T Consensus       129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~-~~~~~~~h  205 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGK-LLHTLEGH  205 (321)
T ss_dssp             EECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEECCC
T ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc-EEEEEccc
Confidence            4899999999999999999999999998888876 667889999999998 89999999999999998876 46778999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|++++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++.+|++++.|+.|+|||+++.. ++.
T Consensus       206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~  284 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVH  284 (321)
T ss_dssp             SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEE
Confidence            999999999999999999999999999999999888777 688999999999999999999999999999999873 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .+.  +|...|.+++|+|++++|            ++++.|+.|++||+
T Consensus       285 ~~~--~h~~~v~~v~~s~~g~~l------------~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          285 TFF--DHQDQVWGVKYNGNGSKI------------VSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEC--CCSSCEEEEEECTTSSEE------------EEEETTCCEEEEEC
T ss_pred             EEc--CCCCcEEEEEECCCCCEE------------EEEeCCCeEEEEeC
Confidence            444  799999999999976554            44466999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=9.9e-27  Score=237.61  Aligned_cols=201  Identities=15%  Similarity=0.264  Sum_probs=172.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++|+.|++|+|||+.+++.+..+.+ |...|.+++|++++. +|++|+.|++|++||++...  +..+.+|
T Consensus        72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~--~~~~~~h  147 (319)
T 3frx_A           72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQC--LATLLGH  147 (319)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCE--EEEECCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe--EEEEecc
Confidence            4789999999999999999999999999999987 777899999999998 89999999999999997653  6778899


Q ss_pred             CCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           81 SAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        81 ~~~VtslafsPd------g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ...|.++.|.|.      +.+|++++.|+.|++||+++.+....+ .|...|.+++|+|++++|++|+.||.|+|||++.
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999984      458999999999999999998877666 7999999999999999999999999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEecc-------------------------------------CCCCeEEEE
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT-------------------------------------CKAETALLG  196 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~-------------------------------------ssd~~~Lls  196 (568)
                      .+ .+..+.   +...|.+++|+|++.+++++..                                     ..++.+|++
T Consensus       228 ~~-~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          228 KK-AMYTLS---AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             TE-EEEEEE---CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             Cc-EEEEec---CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence            73 334443   4578999999999988765421                                     235566777


Q ss_pred             ecCCCcEEcCCCC
Q 008356          197 GAVGDSILMPDPL  209 (568)
Q Consensus       197 ~s~Dg~V~VWDlr  209 (568)
                      ++.|+.|++||+.
T Consensus       304 g~~Dg~i~vWd~~  316 (319)
T 3frx_A          304 GYTDNVIRVWQVM  316 (319)
T ss_dssp             EETTSCEEEEEEE
T ss_pred             eecCceEEEEEEe
Confidence            7778888888764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=7.9e-27  Score=242.90  Aligned_cols=194  Identities=18%  Similarity=0.217  Sum_probs=161.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEee---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~---~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+++ ++|++|+.||.|+|||+.+++.+..++   ..|...|++|+|+|+++ +|++|+.|++|++||+.+++ .+..+
T Consensus        89 ~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~-~~~~~  165 (344)
T 4gqb_B           89 TWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQV-VLSSY  165 (344)
T ss_dssp             EEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEE
T ss_pred             EEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCc-EEEEE
Confidence            37787 478899999999999999887654332   24788999999999998 89999999999999999877 47788


Q ss_pred             ccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC
Q 008356           78 KQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        78 ~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlr  152 (568)
                      .+|...|++++|++++ .+|++++.|++|++||+++++++..+   .+...+.+++|+|+ +++|++|+.||.|+|||++
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999999999999976 57899999999999999999887766   35567999999994 6789999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      +.+ ++..+.  +|...|++++|+|++.           .+|++++.|+.|++||++..
T Consensus       246 ~~~-~~~~~~--~h~~~v~~v~fsp~g~-----------~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          246 STS-CVLSSA--VHSQCVTGLVFSPHSV-----------PFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             C---CCEEEE--CCSSCEEEEEECSSSS-----------CCEEEEETTSCEEEECTTCC
T ss_pred             CCc-EEEEEc--CCCCCEEEEEEccCCC-----------eEEEEEeCCCeEEEEECCCC
Confidence            874 455555  7999999999999752           33555577999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=6.3e-27  Score=248.94  Aligned_cols=201  Identities=12%  Similarity=0.105  Sum_probs=160.5

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEee-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-   77 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~-~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l-   77 (568)
                      +|+| ++++||+|+.||.|+|||+.+++....+. ..|...|++|+|+|.+.++|++|+.||+|+|||+++... .... 
T Consensus       126 ~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~  204 (435)
T 4e54_B          126 AWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFAS  204 (435)
T ss_dssp             EECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEEC
T ss_pred             EEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEec
Confidence            4888 56799999999999999998776554443 237788999999985444899999999999999987652 2222 


Q ss_pred             -ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCC
Q 008356           78 -KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        78 -~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~-~LasGs~DG~V~VWDlrt~~  155 (568)
                       ..+...+.+++|+|++++|++|+.||.|++||++.........|...|.+++|+|++. +|++|+.|+.|+|||++...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          205 SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence             2334568899999999999999999999999998655444447899999999999875 78899999999999999865


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      .........+|...|++++|+|+|++|+            +++.|+.|++||++.....
T Consensus       285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~------------s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          285 GKASFLYSLPHRHPVNAACFSPDGARLL------------TTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             SSSCCSBCCBCSSCEEECCBCTTSSEEE------------EEESSSCEEEEESSSSSSE
T ss_pred             ccceEEEeeeccccccceeECCCCCeeE------------EEcCCCEEEEEECCCCccc
Confidence            4444444457999999999999766554            4466999999999876543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=1.8e-26  Score=244.43  Aligned_cols=191  Identities=14%  Similarity=0.245  Sum_probs=169.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++|+.|+.|++||+.+++++..+.+ |...|.++.|++++. +|++|+.|+.|++||+.+... ...+..|
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~-~~~~~~h  275 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKEC-KAELREH  275 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEEECCC
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCce-eeEecCC
Confidence            4789999999999999999999999999999987 777899999999998 899999999999999988764 6678899


Q ss_pred             CCCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEE
Q 008356           81 SAPTAGISFSSD--------------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        81 ~~~VtslafsPd--------------------g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~Las  139 (568)
                      ...|.+++|+|+                    +.+|++|+.|+.|++||+++++++..+ .|...|.+++|+|++++|++
T Consensus       276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  355 (410)
T 1vyh_C          276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS  355 (410)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEE
Confidence            999999999995                    678999999999999999999888777 68999999999999999999


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |+.||.|++||+++.. .+..+.  +|...|++++|+|++++|++            ++.|+.|++||+|
T Consensus       356 ~s~D~~i~vwd~~~~~-~~~~~~--~h~~~v~~l~~~~~~~~l~s------------gs~D~~i~vW~~r  410 (410)
T 1vyh_C          356 CADDKTLRVWDYKNKR-CMKTLN--AHEHFVTSLDFHKTAPYVVT------------GSVDQTVKVWECR  410 (410)
T ss_dssp             EETTTEEEEECCTTSC-CCEEEE--CCSSCEEEEEECSSSSCEEE------------EETTSEEEEEC--
T ss_pred             EeCCCeEEEEECCCCc-eEEEEc--CCCCcEEEEEEcCCCCEEEE------------EeCCCcEEEEeCC
Confidence            9999999999998774 455565  79999999999997666554            4669999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=2.2e-26  Score=236.83  Aligned_cols=187  Identities=15%  Similarity=0.185  Sum_probs=164.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |++++ .|++++.|+.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|+.|++||+.+.. ....+.+|.
T Consensus       151 ~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~  226 (340)
T 1got_B          151 FLDDN-QIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM-CRQTFTGHE  226 (340)
T ss_dssp             EEETT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS-EEEEECCCS
T ss_pred             ECCCC-cEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe-eEEEEcCCc
Confidence            44444 588999999999999999999988886 777899999999997 89999999999999998876 467788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ..|++++|+|++++|++++.|++|++||+++++.+..+.+.   ..|.+++|+|++++|++|+.|+.|++||+.... ..
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~  305 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RA  305 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EE
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc-Ee
Confidence            99999999999999999999999999999998887777544   479999999999999999999999999998864 44


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      ..+.  +|...|.+++|+|++++|+++            +.|+.|++||
T Consensus       306 ~~~~--~h~~~v~~~~~s~dg~~l~s~------------s~D~~i~iWd  340 (340)
T 1got_B          306 GVLA--GHDNRVSCLGVTDDGMAVATG------------SWDSFLKIWN  340 (340)
T ss_dssp             EEEE--CCSSCEEEEEECTTSSCEEEE------------ETTSCEEEEC
T ss_pred             eEee--cCCCcEEEEEEcCCCCEEEEE------------cCCccEEecC
Confidence            5555  899999999999987665554            6699999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=2.3e-26  Score=238.83  Aligned_cols=195  Identities=14%  Similarity=0.151  Sum_probs=169.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-----ceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-----PKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-----~~v~   75 (568)
                      +|+|++++|++|+.||+|+|||..+++....+.. +...|.+++|+|++. +|++|+.|+.+++|++....     ....
T Consensus        71 ~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~  148 (354)
T 2pbi_B           71 DWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKK  148 (354)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCC-EEEEeeCCCCEEEEEEeccccccccccce
Confidence            4899999999999999999999999998888876 566788899999998 89999999999999985431     2355


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec--CCCEEEEEEcCCeEEEEECC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP--dg~~LasGs~DG~V~VWDlr  152 (568)
                      .+..|...|.++.|+|++..|++++.|++|++||+++++++..+ .|...|.+++|+|  ++++|++|+.||.|++||++
T Consensus       149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            67789999999999999999999999999999999999988877 5889999999988  57899999999999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.. ++..+.  .|...|++++|+|++.+|            ++++.|+.|++||++...
T Consensus       229 ~~~-~~~~~~--~h~~~v~~v~~~p~~~~l------------~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          229 SGQ-CVQAFE--THESDVNSVRYYPSGDAF------------ASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             TCC-EEEEEC--CCSSCEEEEEECTTSSEE------------EEEETTSCEEEEETTTTE
T ss_pred             CCc-EEEEec--CCCCCeEEEEEeCCCCEE------------EEEeCCCeEEEEECCCCc
Confidence            874 445554  799999999999976554            445679999999997643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=6e-26  Score=233.52  Aligned_cols=189  Identities=16%  Similarity=0.171  Sum_probs=158.3

Q ss_pred             cC-CCCEEEEEECCCcEEEEECCCC-------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            3 NC-KDEHLASISLSGDLILHNLASG-------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         3 Sp-dG~~LasGs~DG~V~VWDl~tg-------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      ++ ++++|++|+.|++|+|||+.++       .....+.+ |...|.+++|++++. ++++|+.|++|++||+.+++ .+
T Consensus        35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~-~~  111 (343)
T 2xzm_R           35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGT-TY  111 (343)
T ss_dssp             TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTT-EEEEEETTSEEEEEETTSSC-EE
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCc-EE
Confidence            44 8999999999999999998753       34455665 778899999999998 89999999999999998876 46


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCC----------CEEEEEE
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDD----------WILTAGT  141 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg----------~~LasGs  141 (568)
                      ..+.+|...|++++|+|++++|++++.|++|++||+.........   .|...|.+++|+|++          .+|++++
T Consensus       112 ~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            778899999999999999999999999999999999854433333   577889999999986          7999999


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .|+.|++||.+.  +....+.  +|...|.+++|+|+|++|+++            +.|+.|++||++.
T Consensus       192 ~d~~i~iwd~~~--~~~~~~~--~h~~~v~~~~~s~~g~~l~sg------------s~dg~v~iwd~~~  244 (343)
T 2xzm_R          192 WDGRLKVWNTNF--QIRYTFK--AHESNVNHLSISPNGKYIATG------------GKDKKLLIWDILN  244 (343)
T ss_dssp             TTSEEEEEETTT--EEEEEEE--CCSSCEEEEEECTTSSEEEEE------------ETTCEEEEEESSC
T ss_pred             CCCEEEEEcCCC--ceeEEEc--CccccceEEEECCCCCEEEEE------------cCCCeEEEEECCC
Confidence            999999999543  2333444  799999999999977665554            6699999999854

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=1e-26  Score=241.98  Aligned_cols=195  Identities=12%  Similarity=0.156  Sum_probs=166.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v-~~l~~   79 (568)
                      +|+|++++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+++++.++++++.||.|++||+++.+... .....
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~  224 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA  224 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc
Confidence            4899999999999999999999999999999987 778899999999987789999999999999998776432 23456


Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCC
Q 008356           80 HSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        80 H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      |...|++++|+|+ +.+|++++.|+.|++||+++++++..+ .|...|.+++|+|++ ++|++|+.|+.|+|||+++.  
T Consensus       225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--  302 (357)
T 4g56_B          225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--  302 (357)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC--
T ss_pred             ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC--
Confidence            7788999999995 678999999999999999999888777 688999999999987 68999999999999999886  


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                        +.+...+|.+.|++++|+|.           ++.+|++++.|+.|++||+...
T Consensus       303 --~~~~~~~H~~~V~~vafsP~-----------d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          303 --EVFRDLSHRDFVTGVAWSPL-----------DHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             --EEEEECCCSSCEEEEEECSS-----------STTEEEEEETTSCEEEEECC--
T ss_pred             --cEeEECCCCCCEEEEEEeCC-----------CCCEEEEEcCCCeEEEEECCCC
Confidence              23344589999999999983           2334555677999999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=239.18  Aligned_cols=195  Identities=13%  Similarity=0.192  Sum_probs=163.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~~l   77 (568)
                      +|+|+|++||+|+.|+.|+|||+.++....  .+...|...|.+++|+|+++ +|++|+.|+.|+|||+.... ..+..+
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDDFECVTTL  101 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECCCcEEEEEccCCCeEEEEEc
Confidence            489999999999999999999998776432  33345888999999999998 89999999999999997664 236678


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~---v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .+|...|++++|+|++++|++++.|++|++||++++..   +..+ .|...|.+++|+|++++|++++.|+.|++||++.
T Consensus       102 ~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred             cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence            89999999999999999999999999999999987643   3333 5888999999999999999999999999999987


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .. ........+|...|++++|+|++++|++            ++.|+.|++||++
T Consensus       182 ~~-~~~~~~~~~h~~~v~~l~~sp~g~~l~s------------~s~D~~v~iW~~~  224 (345)
T 3fm0_A          182 DD-WVCCATLEGHESTVWSLAFDPSGQRLAS------------CSDDRTVRIWRQY  224 (345)
T ss_dssp             TE-EEEEEEECCCSSCEEEEEECTTSSEEEE------------EETTSCEEEEEEE
T ss_pred             CC-EEEEEEecCCCCceEEEEECCCCCEEEE------------EeCCCeEEEeccc
Confidence            53 1222233489999999999997665544            4669999999964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=236.68  Aligned_cols=195  Identities=18%  Similarity=0.237  Sum_probs=171.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|++++.++++++.|+.|++||+.+++.+..+.. +...+.+++|+|+++ +|++++.||.|++||+..... ...+..|
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~-~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~-~~~~~~~  163 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKK-EYSLDTR  163 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSE-EEEEECS
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC-CCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCce-eEEecCC
Confidence            3688999999999999999999999999988886 555677899999998 899999999999999988774 5667889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.|+.|+|||++... ...
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~  242 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-LAG  242 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-EEE
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-eeE
Confidence            999999999999999999999999999999999988877 588899999999999999999999999999999874 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .+.  +|...|.+++|+|++++|            ++++.|+.|++||++....
T Consensus       243 ~~~--~h~~~v~~~~~sp~~~~l------------~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          243 TLS--GHASWVLNVAFCPDDTHF------------VSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             EEC--CCSSCEEEEEECTTSSEE------------EEEETTSCEEEEETTTTEE
T ss_pred             EEc--CCCCceEEEEECCCCCEE------------EEEeCCCcEEEEeCCCCEE
Confidence            444  899999999999976554            4456799999999976543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=1.1e-26  Score=242.87  Aligned_cols=197  Identities=15%  Similarity=0.193  Sum_probs=170.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------cee
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKV   74 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~------~~v   74 (568)
                      +|+|++++|++|+.||+|+|||+.+++....+.. |...|.+++|+|+++ +|++|+.|+.|++||+....      ...
T Consensus        73 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~~~~~~  150 (380)
T 3iz6_a           73 DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVS  150 (380)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSS-EEEECCSSSCCEEEECCCCSSCCCSSTTC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCC-EEEEeeCCCcEEEEECCCCccccCCccce
Confidence            4899999999999999999999999999999987 667788899999998 89999999999999996432      224


Q ss_pred             EEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeEe------ecCCCeEEEEEec-CCCEEEEEEcCCeE
Q 008356           75 SWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFID-DDWILTAGTSNGRV  146 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~------~h~~~ItsLafsP-dg~~LasGs~DG~V  146 (568)
                      ..+.+|...|.++.|.|+ +..|++++.|++|++||+++++.+..+      .|...|.+++|++ ++++|++|+.|+.|
T Consensus       151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v  230 (380)
T 3iz6_a          151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV  230 (380)
T ss_dssp             CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred             eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence            567899999999999995 567999999999999999999887765      4778899999987 78999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ++||++.....+..+.  +|.+.|.+++|+|++++|            ++++.|+.|++||++....
T Consensus       231 ~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l------------~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          231 RLWDLRITSRAVRTYH--GHEGDINSVKFFPDGQRF------------GTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             EEEETTTTCCCCEEEC--CCSSCCCEEEECTTSSEE------------EEECSSSCEEEEETTTTEE
T ss_pred             EEEECCCCCcceEEEC--CcCCCeEEEEEecCCCeE------------EEEcCCCeEEEEECCCCcE
Confidence            9999986555666665  899999999999976555            4456799999999987543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=6.9e-26  Score=235.28  Aligned_cols=190  Identities=17%  Similarity=0.210  Sum_probs=165.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|++++++|++++.||+|++||+++++.+..+.+ |...|.+++|+++. .++|++|+.||.|++||+++++. +..+..
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~  238 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFET  238 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECC
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecC
Confidence            3789999999999999999999999999999987 66788999998852 24899999999999999988874 677889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h---~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      |...|++++|+|++++|++++.|++|++||++.++.+..+..   ...+.+++|+|++++|++|+.|+.|+|||++... 
T Consensus       239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-  317 (354)
T 2pbi_B          239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-  317 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-
T ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-
Confidence            999999999999999999999999999999999887766643   3468999999999999999999999999998774 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      .+..+.  +|...|++++|+|++++|+++            +.|+.|++|+
T Consensus       318 ~~~~l~--~h~~~v~~l~~spdg~~l~sg------------s~D~~v~vW~  354 (354)
T 2pbi_B          318 RVSILF--GHENRVSTLRVSPDGTAFCSG------------SWDHTLRVWA  354 (354)
T ss_dssp             EEEEEC--CCSSCEEEEEECTTSSCEEEE------------ETTSEEEEEC
T ss_pred             eEEEEE--CCCCcEEEEEECCCCCEEEEE------------cCCCCEEecC
Confidence            344444  899999999999987666555            5699999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=7.6e-26  Score=228.44  Aligned_cols=199  Identities=11%  Similarity=0.167  Sum_probs=163.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC--CceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t--g~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~v~   75 (568)
                      +|+|+|++||+|+.|+.|+|||+..  .+.+..+.+ |...|.+++|+++  ++ +|++|+.|++|+|||+.++. ..+.
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~~~   93 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWSQIA   93 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCceEEEE
Confidence            4899999999999999999999974  356778876 7788999999864  55 89999999999999998764 2355


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCce---eeEeecCCCeEEEEEecC-------------CCEE
Q 008356           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDD-------------DWIL  137 (568)
Q Consensus        76 ~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~---v~~~~h~~~ItsLafsPd-------------g~~L  137 (568)
                      .+..|...|++++|+|+  +.+|++++.|+.|++||++++..   .....|...|.+++|+|+             +++|
T Consensus        94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l  173 (297)
T 2pm7_B           94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred             EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence            67889999999999996  89999999999999999987632   223368899999999996             5799


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEE-eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVL-RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l-~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ++|+.|+.|+|||++......... ...+|...|.+++|+|++         ..+.+|++++.|+.|++||++.
T Consensus       174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~---------~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------LLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------SSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC---------CCceEEEEEECCCcEEEEEeCC
Confidence            999999999999998764322221 233899999999999963         1245677778899999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=3.7e-25  Score=229.00  Aligned_cols=201  Identities=11%  Similarity=0.125  Sum_probs=165.1

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKD-EHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|++ ++|++|+.||.|+|||+.+++....+.. .|...|.+++|+|++..+|++++.|+.|++||+.+..  ...+.
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~  157 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV--IQVFA  157 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE--EEEEE
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc--eEEEe
Confidence            488999 9999999999999999998888777763 4788999999999544589999999999999998643  44444


Q ss_pred             c---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCC
Q 008356           79 Q---HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        79 ~---H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~-~LasGs~DG~V~VWDlrt  153 (568)
                      .   |...|.+++|+|++++|++++.|+.|++||++ ++.+..+ .|...|.+++|+|+++ +|++++.|+.|++||++.
T Consensus       158 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          158 KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            3   44889999999999999999999999999995 5555555 6899999999999998 999999999999999997


Q ss_pred             CCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      .......+...+|...|.+++|+| ++++|+++            +.|+.|++||++.......
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~------------~~d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT------------DQRNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE------------ESSSEEEEEETTBTTSCSE
T ss_pred             CCcccceEEEecCCCceEEEEEcCCCCCEEEEE------------cCCCcEEEEECCCCccccc
Confidence            432222233336899999999999 76665544            5699999999987665433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=1.4e-25  Score=229.04  Aligned_cols=195  Identities=12%  Similarity=0.160  Sum_probs=164.6

Q ss_pred             CccCCC-CEEEEEECCCcEEEEECCC-----CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            1 MYNCKD-EHLASISLSGDLILHNLAS-----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpdG-~~LasGs~DG~V~VWDl~t-----g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      +|+|++ ++|++|+.|++|++||+..     +..+..+.+ |...|.+++|+++++ +|++|+.|++|+|||+.+++ .+
T Consensus        24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~-~l~s~s~D~~v~~wd~~~~~-~~  100 (319)
T 3frx_A           24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGA-YALSASWDKTLRLWDVATGE-TY  100 (319)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EE
T ss_pred             EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCC-EEEEEeCCCEEEEEECCCCC-ee
Confidence            367765 8999999999999999863     234566776 778899999999998 89999999999999998887 46


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecC------CCEEEEEEcCCeEEE
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD------DWILTAGTSNGRVVF  148 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd------g~~LasGs~DG~V~V  148 (568)
                      ..+.+|...|.+++|+|++.+|++++.|++|++||++.........|...|.+++|.|+      +.+|++++.|+.|++
T Consensus       101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  180 (319)
T 3frx_A          101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA  180 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred             EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence            77889999999999999999999999999999999986555455579999999999985      458999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ||++... ....+  .+|...|.+++|+|++++|++            ++.|+.|++||++....
T Consensus       181 wd~~~~~-~~~~~--~~h~~~v~~~~~sp~g~~l~s------------~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          181 WNLNQFQ-IEADF--IGHNSNINTLTASPDGTLIAS------------AGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             EETTTTE-EEEEE--CCCCSCEEEEEECTTSSEEEE------------EETTCEEEEEETTTTEE
T ss_pred             EECCcch-hheee--cCCCCcEEEEEEcCCCCEEEE------------EeCCCeEEEEECCCCcE
Confidence            9998763 23333  389999999999997666554            46699999999977544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=2.1e-25  Score=222.42  Aligned_cols=198  Identities=16%  Similarity=0.284  Sum_probs=161.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC---
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS---   71 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafsp--dg~~lLaTgs~DGtV~VWDl~t~~---   71 (568)
                      +|+|++++|++|+.||.|+|||+.++.    ....+.+ |...|.+++|++  +++ +|++++.||.|++||+....   
T Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~   95 (351)
T 3f3f_A           18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEEC   95 (351)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTT
T ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccc
Confidence            489999999999999999999998763    4556665 778899999999  466 89999999999999997753   


Q ss_pred             -----ceeEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCce-----------------------------
Q 008356           72 -----PKVSWLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRP-----------------------------  115 (568)
Q Consensus        72 -----~~v~~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~-----------------------------  115 (568)
                           .....+..|...|.+++|+|+  +++|++++.|+.|++||+++++.                             
T Consensus        96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (351)
T 3f3f_A           96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW  175 (351)
T ss_dssp             SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred             cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence                 236677889999999999998  99999999999999999876542                             


Q ss_pred             -------------------------------eeEe-ecCCCeEEEEEecCC----CEEEEEEcCCeEEEEECCCCCCc--
Q 008356          116 -------------------------------SSCI-TYEAPFSSLAFIDDD----WILTAGTSNGRVVFYDIRGKPQP--  157 (568)
Q Consensus       116 -------------------------------v~~~-~h~~~ItsLafsPdg----~~LasGs~DG~V~VWDlrt~~~~--  157 (568)
                                                     +..+ .|...|.+++|+|++    ++|++++.||.|++||++.....  
T Consensus       176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  255 (351)
T 3f3f_A          176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA  255 (351)
T ss_dssp             CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred             ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence                                           1112 377889999999998    89999999999999999864210  


Q ss_pred             -----------------------------------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 008356          158 -----------------------------------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG  196 (568)
Q Consensus       158 -----------------------------------------v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls  196 (568)
                                                               .......+|...|++++|+|++++|+++           
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-----------  324 (351)
T 3f3f_A          256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA-----------  324 (351)
T ss_dssp             -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE-----------
T ss_pred             cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe-----------
Confidence                                                     1112223799999999999977665554           


Q ss_pred             ecCCCcEEcCCCCCCC
Q 008356          197 GAVGDSILMPDPLPSV  212 (568)
Q Consensus       197 ~s~Dg~V~VWDlr~~~  212 (568)
                       +.|+.|++||+....
T Consensus       325 -~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          325 -GDDGKVRLWKATYSN  339 (351)
T ss_dssp             -ETTSCEEEEEECTTS
T ss_pred             -cCCCcEEEEecCcCc
Confidence             569999999987644

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=3e-25  Score=233.16  Aligned_cols=196  Identities=18%  Similarity=0.269  Sum_probs=165.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC-----------------CCcEEEEEEccCCCeEEEEEeCCCeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-----------------EQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-----------------~~~Vs~Lafspdg~~lLaTgs~DGtV~   63 (568)
                      +|+|||++|++|+ ++.++||++.+++.+..+..+.                 ...|++++|+|+++ +|++|+.|+.|+
T Consensus        71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~  148 (393)
T 1erj_A           71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIR  148 (393)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC-EEEEEcCCCeEE
Confidence            4899999999976 7899999999999887776532                 12489999999998 899999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec-CCCEEEEEEc
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTS  142 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-dg~~LasGs~  142 (568)
                      |||+.+.+ .+..+.+|...|++++|+|++++|++++.|++|++||++++++...+.+...+.+++|+| ++++|++|+.
T Consensus       149 iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          149 IWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC
Confidence            99998876 467789999999999999999999999999999999999999888888889999999999 8999999999


Q ss_pred             CCeEEEEECCCCCCceEEEe-----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          143 NGRVVFYDIRGKPQPLTVLR-----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       143 DG~V~VWDlrt~~~~v~~l~-----~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |+.|++||+++.. .+..+.     ..+|...|.+++|+|++++|            ++++.|+.|++||++...
T Consensus       228 d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l------------~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          228 DRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSV------------VSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             TSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEE------------EEEETTSEEEEEEC----
T ss_pred             CCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEE------------EEEeCCCEEEEEECCCCC
Confidence            9999999999874 333331     13789999999999976555            444669999999997643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=7.5e-26  Score=235.52  Aligned_cols=197  Identities=17%  Similarity=0.246  Sum_probs=154.4

Q ss_pred             CccCCCCEEEEEEC------CCcEEEEECCCCcee----EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            1 MYNCKDEHLASISL------SGDLILHNLASGAKA----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpdG~~LasGs~------DG~V~VWDl~tg~~v----~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +|+|||++|++|+.      |+.|++|+..++...    ..... |...|.+++|+|++.  +++++.||+|+|||+.++
T Consensus        49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~  125 (357)
T 4g56_B           49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ-TEAGVTDVAWVSEKG--ILVASDSGAVELWEILEK  125 (357)
T ss_dssp             EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE-CSSCEEEEEEETTTE--EEEEETTSCEEEC-----
T ss_pred             EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC-CCCCEEEEEEcCCCC--EEEEECCCEEEEeecccc
Confidence            48999999999997      788999998776532    22222 667799999999875  667889999999999776


Q ss_pred             Cce---eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC-EEEEEEcCCe
Q 008356           71 SPK---VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGR  145 (568)
Q Consensus        71 ~~~---v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~-~LasGs~DG~  145 (568)
                      +..   .....+|...|++++|+|++++|++++.|+.|++||+++++++..+ .|...|.+++|++++. ++++++.||.
T Consensus       126 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~  205 (357)
T 4g56_B          126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR  205 (357)
T ss_dssp             ---CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred             ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence            532   2345689999999999999999999999999999999999988887 5899999999999874 7899999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |+|||+++.+ +...+....|...+.+++|+|++           +.++++++.|+.|++||++...
T Consensus       206 v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~-----------~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          206 ILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEK-----------DDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             EEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTS-----------TTEEEEEESSSCEEEEESSCGG
T ss_pred             eEEEECCCCc-eeeeeeeccccccccchhhhhcc-----------cceEEEeecccceeEEECCCCc
Confidence            9999999874 33444444677889999999963           3345566779999999987643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=5.4e-25  Score=227.17  Aligned_cols=194  Identities=16%  Similarity=0.217  Sum_probs=155.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--~v~~   76 (568)
                      +|+|++++|++|+.|+.|+|||+..+.  .+..+.+ |...|.+++|+|+++ +|++|+.|+.|++||+.....  .+..
T Consensus        68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            489999999999999999999987764  4566765 778899999999997 899999999999999976542  2556


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS--SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v--~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      +..|...|.+++|+|++++|++++.|+.|++||+++++..  ..+ .|...|.+++|+|++++|++|+.|+.|+|||...
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            7889999999999999999999999999999999887533  333 6899999999999999999999999999999743


Q ss_pred             CCCc--------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          154 KPQP--------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       154 ~~~~--------------v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ....              +..+. ..|...|.+++|++++..++++            +.|+.|++||+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~------------~~d~~i~vw~~~  282 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATA------------CGDDAIRVFQED  282 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEE------------ETTSCEEEEEEC
T ss_pred             CCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEE------------eCCCeEEEEEeC
Confidence            2111              11111 1277888999998876655443            345556666544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=4.9e-25  Score=231.49  Aligned_cols=197  Identities=17%  Similarity=0.208  Sum_probs=163.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++++.|++|++||+.+++. ... ..+
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~-~~~-~~~  205 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQC-SLT-LSI  205 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-EEE-EEC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCee-EEE-EEc
Confidence            4899999999999999999999999998888886 777899999999998 799999999999999988763 222 346


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe--------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~--------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      ...|.+++|+| ++++|++++.|+.|++||+++++.+..+        .|...|.+++|+|++++|++|+.|+.|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            67899999999 9999999999999999999998876654        47889999999999999999999999999999


Q ss_pred             CCCCCc---------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          152 RGKPQP---------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       152 rt~~~~---------v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +.....         .......+|...|.+++|++++++|            ++++.|+.|++||++....
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l------------~sgs~D~~v~iwd~~~~~~  344 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI------------LSGSKDRGVLFWDKKSGNP  344 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEE------------EEEETTSEEEEEETTTCCE
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEE------------EEEeCCCeEEEEECCCCeE
Confidence            864211         1112233799999999999976554            4556799999999876543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=6.2e-26  Score=237.10  Aligned_cols=191  Identities=11%  Similarity=0.083  Sum_probs=154.1

Q ss_pred             CccCCCCEEEEEE--CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe
Q 008356            1 MYNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs--~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l   77 (568)
                      +|+|||++|++++  .|++|+|||+.+++.+..+.  |...|.+|+|+|+++ +|++++.|+ +++|+..++... ....
T Consensus       140 ~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~-~l~s~s~~~-~~~~~~~~~~~~~~~~~  215 (365)
T 4h5i_A          140 YISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGK-VVAYITGSS-LEVISTVTGSCIARKTD  215 (365)
T ss_dssp             EECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSS-EEEEECSSC-EEEEETTTCCEEEEECC
T ss_pred             EEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCc-eEEecccee-EEEEEeccCcceeeeec
Confidence            4899999987654  68999999999999988886  556689999999998 788887655 555655554433 3345


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCcee----e-EeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPS----S-CITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DG----tV~IWDlrt~~~v----~-~~~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      ..|...|.+++|+|+++++++++.|+    .+++||+......    . ...|...|++++|+|+|++||+|+.|+.|+|
T Consensus       216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL  295 (365)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence            67889999999999999999999887    6889998776532    1 2257889999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ||+++.+.....+.  +|...|++|+|+|+|++|+++            +.|++|+|||+.
T Consensus       296 wd~~~~~~~~~~~~--gH~~~V~~v~fSpdg~~laS~------------S~D~tvrvw~ip  342 (365)
T 4h5i_A          296 VKLKDLSMSKIFKQ--AHSFAITEVTISPDSTYVASV------------SAANTIHIIKLP  342 (365)
T ss_dssp             EETTTTEEEEEETT--SSSSCEEEEEECTTSCEEEEE------------ETTSEEEEEECC
T ss_pred             EECCCCcEEEEecC--cccCCEEEEEECCCCCEEEEE------------eCCCeEEEEEcC
Confidence            99998742222233  799999999999977665554            669999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.6e-25  Score=232.58  Aligned_cols=196  Identities=16%  Similarity=0.159  Sum_probs=163.4

Q ss_pred             ccCC-CCEEEEEECCCcEEEEECCCCceeEEee----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            2 YNCK-DEHLASISLSGDLILHNLASGAKAAELK----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v~~l~----~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      |+|+ +.+|++|+.|++|++||+.+++.+..+.    ..|...|.+++|++.+.++|++|+.|++|++||++.....+..
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            5665 4579999999999999999999887762    2367788999998844459999999999999999855445778


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec--------CCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h--------~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      +.+|...|++++|+|++++|++++.|++|++||+++++.+..+..        ...|.+++|+|+|++|++|+.||.|++
T Consensus       245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v  324 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV  324 (380)
T ss_dssp             ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred             ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence            899999999999999999999999999999999999988877632        124899999999999999999999999


Q ss_pred             EECCCCCCceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          149 YDIRGKPQPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       149 WDlrt~~~~v~~l~~--~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ||+...+. ...+..  .+|.+.|++++|+|+|++|+++            +.|+.|++||+..
T Consensus       325 wd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg------------s~D~~i~iW~~~~  375 (380)
T 3iz6_a          325 WDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTG------------SWDKNLKIWAFSG  375 (380)
T ss_dssp             EETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEE------------CTTSCEEEEECCS
T ss_pred             EECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEe------------eCCCCEEEEecCC
Confidence            99987743 233311  3799999999999976655554            6699999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.3e-25  Score=226.53  Aligned_cols=194  Identities=14%  Similarity=0.231  Sum_probs=154.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCC--ceeEEe-eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------Cc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASG--AKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR------SP   72 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg--~~v~~l-~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~------~~   72 (568)
                      |+++  +|++|+.||.|+|||+..+  +.+..+ ...|...|.+++|+|+++ +|++|+.|++|+|||+...      ..
T Consensus        22 ~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~   98 (330)
T 2hes_X           22 FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMD   98 (330)
T ss_dssp             EETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCE
T ss_pred             cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccce
Confidence            4554  9999999999999999865  345555 333888999999999997 8999999999999998532      12


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEE
Q 008356           73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR----RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVV  147 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~----~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~  147 (568)
                      ....+.+|...|++++|+|++++|++++.|++|++||++..    +++..+ .|...|.+++|+|++.+|++++.|+.|+
T Consensus        99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  178 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR  178 (330)
T ss_dssp             EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            35678899999999999999999999999999999999532    344444 6889999999999999999999999999


Q ss_pred             EEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          148 FYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       148 VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +||++... .++..+.  +|...|.+++|+|++          ...++++++.|+.|++||++.
T Consensus       179 iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~----------~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          179 IWKDYDDDWECVAVLN--GHEGTVWSSDFDKTE----------GVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEETTEEEEEEEEC--CCSSCEEEEEECCSS----------SSCEEEEEETTSCEEEEEEEE
T ss_pred             EEECCCCCeeEEEEcc--CCCCcEEEEEecCCC----------CeeEEEEEeCCCeEEEEEecC
Confidence            99987642 2334444  899999999999962          234566777899999999754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=6.1e-25  Score=244.63  Aligned_cols=197  Identities=13%  Similarity=0.150  Sum_probs=161.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeE----
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVS----   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~----   75 (568)
                      +|+|||++|++++ ++.|+|||+.+++....+.+ |...|.+++|+|+++ +|++|+.|++|+|||+..... ...    
T Consensus        25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~-h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~  101 (611)
T 1nr0_A           25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPV  101 (611)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             eeCCCCCEEEeCC-CCEEEEecCCCcccCeEecC-CCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence            4899999999987 56999999998888888887 777899999999998 899999999999999853321 111    


Q ss_pred             ----------------------------------------EeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 008356           76 ----------------------------------------WLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRR  114 (568)
Q Consensus        76 ----------------------------------------~l~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~  114 (568)
                                                              .+.+|...|++++|+|++. .|++++.|++|++||.++++
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence                                                    1345677788888888765 68999999999999999888


Q ss_pred             eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-----cCCCCCeeEEEEccCCCeEEEeccC
Q 008356          115 PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-----CSSSEAVSSLCWQRAKPVFIDETTC  188 (568)
Q Consensus       115 ~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~-----~~h~~~VtsLafspdg~~Las~s~s  188 (568)
                      ++..+ .|...|.+++|+|++++|++|+.|+.|+|||++++. ....+..     .+|.+.|.+++|+|++++|++    
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s----  256 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS----  256 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE----
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-EeeeeccccccccccCCCEEEEEECCCCCEEEE----
Confidence            77777 689999999999999999999999999999998764 2333321     169999999999997665544    


Q ss_pred             CCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          189 KAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       189 sd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                              ++.|+.|++||++....
T Consensus       257 --------~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          257 --------ASADKTIKIWNVATLKV  273 (611)
T ss_dssp             --------EETTSEEEEEETTTTEE
T ss_pred             --------EeCCCeEEEEeCCCCce
Confidence                    46699999999976544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=2.1e-25  Score=232.60  Aligned_cols=195  Identities=14%  Similarity=0.151  Sum_probs=165.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |++++++|++|+.||.|+|||+.+++....+.. |...|.+++|+|+++ +|++|+.|+.|++||+...+. +..+.+|.
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~  181 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSN-PRTLIGHR  181 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCC-CEEEECCS
T ss_pred             EecCCCEEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcC-ceEEcCCC
Confidence            689999999999999999999998888777665 778899999999998 899999999999999988764 66788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee----cCCCeEEE---------------------EEecCCCE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSL---------------------AFIDDDWI  136 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~----h~~~ItsL---------------------afsPdg~~  136 (568)
                      ..|++++|+|++++|++++.|+.|++||+++++.+..+.    +...+.++                     +|+|++++
T Consensus       182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY  261 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence            999999999999999999999999999999998887773    34445444                     45788999


Q ss_pred             EEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          137 LTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |++|+.||.|++||+++.........  .|...|.+++|+|+++           .++++++.|+.|++||++...
T Consensus       262 l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-----------~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          262 VIAGHVSGVITVHNVFSKEQTIQLPS--KFTCSCNSLTVDGNNA-----------NYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECC--TTSSCEEEEEECSSCT-----------TEEEEEETTSEEEEEETTCTT
T ss_pred             EEEEcCCCeEEEEECCCCceeEEccc--ccCCCceeEEEeCCCC-----------CEEEEEeCCCeEEEEEcCCCc
Confidence            99999999999999998754333332  6889999999999755           144555679999999998653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=2.4e-24  Score=215.72  Aligned_cols=194  Identities=17%  Similarity=0.198  Sum_probs=169.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|++++|++++.||.|++||+.+++  ....+.. |...|.+++|+++++ +|++++.||.|++||+.+.+ ....+.
T Consensus       104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~-~~~~~~  180 (337)
T 1gxr_A          104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT-LVRQFQ  180 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEEC
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc-CCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCc-eeeeee
Confidence            478999999999999999999998877  4555654 677899999999987 89999999999999998876 466788


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      .|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++.|+.|++||++....  
T Consensus       181 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--  258 (337)
T 1gxr_A          181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--  258 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--
T ss_pred             cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--
Confidence            899999999999999999999999999999999999988889999999999999999999999999999999998742  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                        .....|...|.+++|+|++++++++            +.|+.|++||+.....
T Consensus       259 --~~~~~~~~~v~~~~~~~~~~~l~~~------------~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          259 --YQLHLHESCVLSLKFAYCGKWFVST------------GKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             --EEECCCSSCEEEEEECTTSSEEEEE------------ETTSEEEEEETTTCCE
T ss_pred             --EEEcCCccceeEEEECCCCCEEEEe------------cCCCcEEEEECCCCeE
Confidence              2334789999999999976655444            5689999999876543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-24  Score=218.35  Aligned_cols=198  Identities=16%  Similarity=0.233  Sum_probs=167.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|+|||+.+++.+..+.. |...|.+++|+++++ +|++++.||.|++||+.+.+. +..+. |
T Consensus        39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~-~  114 (369)
T 3zwl_B           39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQC-VATWK-S  114 (369)
T ss_dssp             EECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCE-EEEEE-C
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE-EEEee-c
Confidence            4899999999999999999999999999998886 777899999999987 899999999999999988874 34444 8


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcee-----------eEe-ecCC--CeEEEEEecCCCEEEEEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPS-----------SCI-TYEA--PFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v-----------~~~-~h~~--~ItsLafsPdg~~LasGs  141 (568)
                      ...|.+++|+|++++|++++.+     +.|++||++.....           ..+ .+..  .+.+++|+|++++|++++
T Consensus       115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH  194 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc
Confidence            8999999999999999999999     99999999765422           112 3444  899999999999999999


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      .||.|++||++........+.  .|...|.+++|+|++++|++            ++.|+.|++||++.......
T Consensus       195 ~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~------------~~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          195 KDGKISKYDVSNNYEYVDSID--LHEKSISDMQFSPDLTYFIT------------SSRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             TTSEEEEEETTTTTEEEEEEE--CCSSCEEEEEECTTSSEEEE------------EETTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCcEeEEEEe--cCCCceeEEEECCCCCEEEE------------ecCCceEEEEECCCCceeee
Confidence            999999999998545555555  78999999999997665544            45699999999987654433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=2e-24  Score=217.61  Aligned_cols=196  Identities=17%  Similarity=0.246  Sum_probs=165.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|+.|++||+.+.+ .+..+..|
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~-~~~~~~~~  148 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGK-CLKTLPAH  148 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC-EEEEECCC
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCE-EEEEecCC
Confidence            4899999999999999999999999999999987 677899999999997 89999999999999998876 36778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ...|.+++|+|++++|++++.|+.|++||+++++.+..+  .+...+.+++|+|++++|++++.|+.|++||+++.. .+
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~  227 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CL  227 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EE
Confidence            999999999999999999999999999999999887766  456789999999999999999999999999999873 33


Q ss_pred             EEEeecCCCCCeeE--EEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          159 TVLRACSSSEAVSS--LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       159 ~~l~~~~h~~~Vts--Lafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ..+.  +|...+.+  ..|.+           .++.++++++.|+.|++||++....
T Consensus       228 ~~~~--~~~~~~~~~~~~~~~-----------~~~~~l~sg~~dg~i~vwd~~~~~~  271 (312)
T 4ery_A          228 KTYT--GHKNEKYCIFANFSV-----------TGGKWIVSGSEDNLVYIWNLQTKEI  271 (312)
T ss_dssp             EEEC--SSCCSSSCCCEEEEC-----------SSSCEEEECCTTSCEEEEETTTCCE
T ss_pred             EEEE--ecCCceEEEEEEEEe-----------CCCcEEEEECCCCEEEEEECCCchh
Confidence            4444  45443322  23332           1445667778899999999876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=2e-24  Score=222.06  Aligned_cols=191  Identities=15%  Similarity=0.243  Sum_probs=159.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe---
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL---   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l---   77 (568)
                      +|+|++.+|++|+.|++|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++++.|+.|++||+....  ....   
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~--~~~~~~~  158 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGEC--KFSSAEK  158 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCE--EEECCTT
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCc--eeeeecc
Confidence            4789999999999999999999999999999987 778899999999998 79999999999999997443  2222   


Q ss_pred             ccCCCCeEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           78 KQHSAPTAGISFSSDD----------KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        78 ~~H~~~VtslafsPdg----------~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                      ..|...|.+++|+|++          .+|++++.|+.|++||.. .+....+ .|...|.+++|+|++++|++|+.||.|
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL  237 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeE
Confidence            3788999999999976          799999999999999954 4444444 689999999999999999999999999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++||++....+...+.   +...|.+++|+|++++++.             +.|+.|++||+....
T Consensus       238 ~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~-------------~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          238 LIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAV-------------GTDQGVKIFNLMTQS  287 (343)
T ss_dssp             EEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEE-------------EESSCEEEEESSSCC
T ss_pred             EEEECCCCcccceeec---CCCcEEEEEECCCCCEEEE-------------ECCCCEEEEEeCCCC
Confidence            9999965544444443   4567999999997655433             248889999986543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=9.7e-25  Score=220.29  Aligned_cols=194  Identities=12%  Similarity=0.173  Sum_probs=158.3

Q ss_pred             ccC--CCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-cee
Q 008356            2 YNC--KDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKV   74 (568)
Q Consensus         2 fSp--dG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~v   74 (568)
                      |++  ++++|++|+.||+|+|||+.+++  .+..+.. |...|.+++|+|+  +. +|++++.|+.|++||++... ...
T Consensus        61 ~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             ECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             ecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee
Confidence            555  38999999999999999998774  4455554 7788999999997  65 89999999999999997653 224


Q ss_pred             EEeccCCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEECCCCc----eeeEe-ecCCCeEEEEEecCC--
Q 008356           75 SWLKQHSAPTAGISFSSD-------------DKIIASVGLDKKLYTYDPGSRR----PSSCI-TYEAPFSSLAFIDDD--  134 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPd-------------g~~LaSgs~DGtV~IWDlrt~~----~v~~~-~h~~~ItsLafsPdg--  134 (568)
                      ..+.+|...|++++|+|+             +++|++++.|++|++||+++++    ....+ .|...|.+++|+|++  
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            567889999999999996             5799999999999999998765    33444 589999999999984  


Q ss_pred             -CEEEEEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          135 -WILTAGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       135 -~~LasGs~DG~V~VWDlrt~~~~v--~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                       .+|++++.|+.|+|||++......  ..+....|...|.+++|+|++++|+++            +.|+.|++|++.
T Consensus       219 ~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~------------~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS------------GGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE------------ETTSCEEEEEEC
T ss_pred             ceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE------------cCCCcEEEEEEC
Confidence             899999999999999998753221  233224688899999999987666555            569999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=9.1e-26  Score=232.33  Aligned_cols=199  Identities=12%  Similarity=0.165  Sum_probs=158.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~   76 (568)
                      +|+|++++|++|+.||.|+|||+.++  +.+..+.+ |...|.+++|+|+++ +|++++.|+.|++||+.+..  .....
T Consensus        18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~   95 (377)
T 3dwl_C           18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDGTWKQTLV   95 (377)
T ss_dssp             EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTC-CEEEEETTSSEEEC------CCCCEEE
T ss_pred             EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeE
Confidence            48999999999999999999999888  66677775 778899999999987 89999999999999998765  23566


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eeEe-e-cCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~---v~~~-~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      +..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+ . |...|.+++|+|++++|++++.|+.|++||+
T Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~  175 (377)
T 3dwl_C           96 LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSA  175 (377)
T ss_dssp             CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEE
T ss_pred             ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEE
Confidence            788999999999999999999999999999999998763   4445 4 8999999999999999999999999999999


Q ss_pred             CCCC--------------CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          152 RGKP--------------QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       152 rt~~--------------~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +...              .....+..++|...|.+++|+|++++|+++            +.|+.|++||++....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------------~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA------------GHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE------------ETTTEEC-CEECSTTS
T ss_pred             EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE------------eCCCcEEEEECCCCCC
Confidence            6321              112233333799999999999987665554            5699999999876543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1e-25  Score=231.95  Aligned_cols=181  Identities=12%  Similarity=0.134  Sum_probs=145.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--~v~   75 (568)
                      +|+|++++|++++.||.|+|||+.+++   ....+.. |...|.+++|+|+++ +|++++.|+.|++||++....  ...
T Consensus        62 ~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           62 DWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             EECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeee
Confidence            489999999999999999999998876   4555555 778899999999987 799999999999999987652  245


Q ss_pred             Eecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeeEeecCCCeEEEEEecCCCE
Q 008356           76 WLKQ-HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------------------RRPSSCITYEAPFSSLAFIDDDWI  136 (568)
Q Consensus        76 ~l~~-H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt------------------~~~v~~~~h~~~ItsLafsPdg~~  136 (568)
                      .+.. |...|++++|+|++++|++++.|+.|++||++.                  ++++..+.|...|.+++|+|++++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE
Confidence            6666 999999999999999999999999999999853                  334444478889999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCCCc---eEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          137 LTAGTSNGRVVFYDIRGKPQP---LTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~~~---v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      |++++.||.|++||+++...+   +..+.  .|...|.+++|+|++++|+++
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEE
Confidence            999999999999999988653   23333  789999999999987776655

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.9e-24  Score=240.56  Aligned_cols=198  Identities=11%  Similarity=0.164  Sum_probs=161.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce--eEEeeC-------------------------------------------C
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK--AAELKD-------------------------------------------P   35 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~-------------------------------------------~   35 (568)
                      +|+|+|++||+|+.||+|+|||+.+++.  ...+..                                           .
T Consensus        66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g  145 (611)
T 1nr0_A           66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG  145 (611)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred             EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence            4899999999999999999999864331  222211                                           2


Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      |...|.+++|+|++..+|++|+.|++|++||....+ ....+.+|...|++++|+|++++|++++.|++|++||+++++.
T Consensus       146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence            455677788888776579999999999999987765 3667899999999999999999999999999999999999988


Q ss_pred             eeEe--------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE--------------------------
Q 008356          116 SSCI--------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL--------------------------  161 (568)
Q Consensus       116 v~~~--------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l--------------------------  161 (568)
                      +..+        .|.+.|.+++|+|++++|++++.|+.|+|||+++.+. ...+                          
T Consensus       225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  303 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISAN  303 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence            7766        5889999999999999999999999999999987532 1111                          


Q ss_pred             ---------------eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          162 ---------------RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       162 ---------------~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                                     ...+|...|++++|+|+|++|++            ++.|+.|++||+....
T Consensus       304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s------------~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS------------ADAEGHINSWDISTGI  357 (611)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE------------EETTSCEEEEETTTCC
T ss_pred             CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE------------EeCCCcEEEEECCCCc
Confidence                           12378899999999997665554            4669999999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.7e-24  Score=235.57  Aligned_cols=185  Identities=20%  Similarity=0.327  Sum_probs=161.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.|+.|++||. +++.+..+.+ |...|.+++|+|+++ +|++++.|+.|++||....  .+..+.+|
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~~--~~~~~~~~  466 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNGQ--LLQTLTGH  466 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSC--EEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCCC--EEEEEcCC
Confidence            47899999999999999999995 6778888886 777899999999998 8999999999999997654  36778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|++++|+|++++|++++.|+.|++||. +++++..+ .|...|++++|+|++++|++++.||.|+|||...  +.+.
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~--~~~~  543 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQ  543 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--CEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC--CEEE
Confidence            999999999999999999999999999996 45666555 6899999999999999999999999999999643  3455


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      .+.  +|.+.|++++|+|++++|+++            +.|++|++||
T Consensus       544 ~~~--~h~~~v~~~~fs~dg~~l~s~------------~~D~~i~~Wd  577 (577)
T 2ymu_A          544 TLT--GHSSSVWGVAFSPDGQTIASA------------SSDKTVKLWN  577 (577)
T ss_dssp             EEE--CCSSCEEEEEECTTSSCEEEE------------ETTSCEEEEC
T ss_pred             EEc--CCCCCEEEEEEcCCCCEEEEE------------eCCCEEEEeC
Confidence            555  899999999999987665554            5699999997

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=2.9e-25  Score=226.44  Aligned_cols=200  Identities=10%  Similarity=0.131  Sum_probs=162.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~v~   75 (568)
                      +|+|+|++|++|+.|++|+|||+.+++  .+..+.+ |...|.+++|++.  ++ +|++|+.|++|++||+.++. ....
T Consensus        20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~~   97 (316)
T 3bg1_A           20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSH   97 (316)
T ss_dssp             EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEEE
T ss_pred             eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEEE
Confidence            488999999999999999999998775  4566776 7788999999863  55 89999999999999998754 2356


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee---eEe-ecCCCeEEEEEecC----------------
Q 008356           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPS---SCI-TYEAPFSSLAFIDD----------------  133 (568)
Q Consensus        76 ~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~v---~~~-~h~~~ItsLafsPd----------------  133 (568)
                      .+.+|...|++++|+|+  +.+|++++.|+.|++||++.+...   ..+ .|...|.+++|+|+                
T Consensus        98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  177 (316)
T 3bg1_A           98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN  177 (316)
T ss_dssp             EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred             EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence            67889999999999997  789999999999999999876422   222 57888999999997                


Q ss_pred             -CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          134 -DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       134 -g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                       +++|++|+.|+.|+|||++............+|...|.+++|+|++.        .+..+|++++.|+.|++||+..
T Consensus       178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--------~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--------LPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS--------CSCCEEEEEETTCEEEEEECSS
T ss_pred             ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC--------CCCceEEEEcCCCeEEEEEccC
Confidence             47899999999999999975432222223348999999999999741        1235677778899999999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-24  Score=222.97  Aligned_cols=194  Identities=14%  Similarity=0.206  Sum_probs=154.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-C-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS-------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-S-   71 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t-------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~-   71 (568)
                      +|+|++++|++|+.|+.|+|||+..       .+.+..+.+ |...|.+++|+|+++ +|++|+.|++|++||+... . 
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCC
Confidence            4899999999999999999999853       344556665 778899999999998 8999999999999999532 2 


Q ss_pred             -ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeEe-ecCCCeEEEEEecC--CCEEEEEEcCCe
Q 008356           72 -PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI-TYEAPFSSLAFIDD--DWILTAGTSNGR  145 (568)
Q Consensus        72 -~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~--~~v~~~-~h~~~ItsLafsPd--g~~LasGs~DG~  145 (568)
                       ..+..+.+|...|++++|+|++++|++++.|++|++||++++  +++..+ .|...|.+++|+|+  +.+|++|+.|+.
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence             235678899999999999999999999999999999999876  455555 68999999999998  779999999999


Q ss_pred             EEEEECCCCCCc----eEEEe-ec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          146 VVFYDIRGKPQP----LTVLR-AC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       146 V~VWDlrt~~~~----v~~l~-~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |+|||++.....    ..... .. .|...|.+++|++++             ++++++.|+.|++||+.
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-------------~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-------------LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-------------CEEEEETTSCEEEEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-------------EEEEEeCCCEEEEEEcC
Confidence            999999754210    11111 11 388999999998642             35556679999999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.9e-24  Score=222.79  Aligned_cols=283  Identities=18%  Similarity=0.255  Sum_probs=201.1

Q ss_pred             CccCCCC-EEEEE----------ECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356            1 MYNCKDE-HLASI----------SLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD   66 (568)
Q Consensus         1 afSpdG~-~LasG----------s~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD   66 (568)
                      +|+|+++ +|++|          +.||.|+|||+.+++   .+..+  .|...|.+++|+++++ +|++++.||.|++||
T Consensus        19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~   95 (416)
T 2pm9_A           19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNK-IIAGALDNGSLELYS   95 (416)
T ss_dssp             CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSS-CEEEEESSSCEEEEC
T ss_pred             eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCC-eEEEEccCCeEEEee
Confidence            5899997 89999          889999999998775   33333  3678899999999998 799999999999999


Q ss_pred             CCC---CCceeEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc------eeeE----eecCCCeEEEEEec
Q 008356           67 TTG---RSPKVSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRR------PSSC----ITYEAPFSSLAFID  132 (568)
Q Consensus        67 l~t---~~~~v~~l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~------~v~~----~~h~~~ItsLafsP  132 (568)
                      +..   .......+..|...|++++|+|+ +++|++++.|+.|++||+++++      ....    ..|...|.+++|+|
T Consensus        96 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  175 (416)
T 2pm9_A           96 TNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ  175 (416)
T ss_dssp             CSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS
T ss_pred             cccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC
Confidence            977   23357788899999999999997 8999999999999999999876      3322    25888999999999


Q ss_pred             C-CCEEEEEEcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC---cEE
Q 008356          133 D-DWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD---SIL  204 (568)
Q Consensus       133 d-g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg---~V~  204 (568)
                      + +.+|++++.||.|++||++... .+..+...    +|...|.+++|+|++.           .++++++.|+   .|+
T Consensus       176 ~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~l~~~~~d~~~~~i~  243 (416)
T 2pm9_A          176 SLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNS-----------TRVATATGSDNDPSIL  243 (416)
T ss_dssp             SCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCT-----------TEEEEEECCSSSCCCC
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECCCCC-----------CEEEEEECCCCCceEE
Confidence            8 7899999999999999999873 33444321    1278899999999752           3344455577   999


Q ss_pred             cCCCCCCCc-cccccccccccCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCccccccc
Q 008356          205 MPDPLPSVT-TSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSP  283 (568)
Q Consensus       205 VWDlr~~~~-~~s~~~s~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP  283 (568)
                      +||++.... ...+..                                     -....+..+.     ++-.+...+++-
T Consensus       244 ~~d~~~~~~~~~~~~~-------------------------------------~~~~~v~~~~-----~s~~~~~~l~s~  281 (416)
T 2pm9_A          244 IWDLRNANTPLQTLNQ-------------------------------------GHQKGILSLD-----WCHQDEHLLLSS  281 (416)
T ss_dssp             EEETTSTTSCSBCCCS-------------------------------------CCSSCEEEEE-----ECSSCSSCEEEE
T ss_pred             EEeCCCCCCCcEEeec-------------------------------------CccCceeEEE-----eCCCCCCeEEEE
Confidence            999876421 111000                                     0012233333     100011111122


Q ss_pred             ccccccCCCCcccccccCcCcccccccCCCCCCccc-cCCCCc-ccccccCCCceeeeeeccCCCC
Q 008356          284 LVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSML-FPSSSR-RFPYAEDGSNEHSVFDWKSSST  347 (568)
Q Consensus       284 ~~dv~~~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  347 (568)
                      -.|      ..+++||..++..+..+..+..+...+ | +... ++=+..+.....-|||.+....
T Consensus       282 ~~d------g~v~~wd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          282 GRD------NTVLLWNPESAEQLSQFPARGNWCFKTKF-APEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             ESS------SEEEEECSSSCCEEEEEECSSSCCCCEEE-CTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             eCC------CCEEEeeCCCCccceeecCCCCceEEEEE-CCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            122      338889988888877777776554444 7 4444 5555555556667888876553

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=4e-24  Score=240.80  Aligned_cols=193  Identities=15%  Similarity=0.205  Sum_probs=162.4

Q ss_pred             ccCCC-CEEEEEECCCcEEEEECCCC-----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            2 YNCKD-EHLASISLSGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         2 fSpdG-~~LasGs~DG~V~VWDl~tg-----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      |++++ ++|++|+.||.|+|||+.+.     .....+.+ |...|.+++|+++++ +|++|+.||.|+|||+.++. ...
T Consensus       390 ~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~-~~~  466 (694)
T 3dm0_A          390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGV-STR  466 (694)
T ss_dssp             CCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCc-cee
Confidence            66664 79999999999999998753     23456665 778899999999998 89999999999999998876 367


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCC--CEEEEEEcCCeEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDD--WILTAGTSNGRVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg--~~LasGs~DG~V~VW  149 (568)
                      .+.+|...|.+++|+|++++|++++.|++|++||+.........    .|...|.+++|+|++  .+|++++.|+.|+||
T Consensus       467 ~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw  546 (694)
T 3dm0_A          467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW  546 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred             EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence            78899999999999999999999999999999998765544332    477889999999986  689999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |++... ....+.  +|.+.|++++|+|++++|+            +++.|+.|++||++...
T Consensus       547 d~~~~~-~~~~~~--~h~~~v~~v~~spdg~~l~------------sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          547 NLSNCK-LRSTLA--GHTGYVSTVAVSPDGSLCA------------SGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             ETTTCC-EEEEEC--CCSSCEEEEEECTTSSEEE------------EEETTSBCEEEETTTTE
T ss_pred             ECCCCc-EEEEEc--CCCCCEEEEEEeCCCCEEE------------EEeCCCeEEEEECCCCc
Confidence            999863 344444  8999999999999766554            44669999999987644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=3e-24  Score=241.90  Aligned_cols=178  Identities=20%  Similarity=0.331  Sum_probs=153.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE---e
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW---L   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~---l   77 (568)
                      +|+|++++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.|++|++||+..... ...   .
T Consensus       437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~-~~~~~~~  513 (694)
T 3dm0_A          437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECK-YTISEGG  513 (694)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEE-EEECSST
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcc-eeeccCC
Confidence            4789999999999999999999999999988887 777899999999998 799999999999999865542 222   2


Q ss_pred             ccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           78 KQHSAPTAGISFSSDD--KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        78 ~~H~~~VtslafsPdg--~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+|...|.+++|+|++  ..|++++.|++|++||++++++...+ .|...|.+++|+|++++|++|+.||.|+|||+++.
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            4688999999999976  68999999999999999999888777 68999999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .    .+....+...|.+++|+|++.+++++
T Consensus       594 ~----~~~~~~~~~~v~~~~~sp~~~~l~~~  620 (694)
T 3dm0_A          594 K----KLYSLEANSVIHALCFSPNRYWLCAA  620 (694)
T ss_dssp             E----EEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred             c----eEEEecCCCcEEEEEEcCCCcEEEEE
Confidence            3    22223456789999999987766543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.8e-24  Score=218.85  Aligned_cols=200  Identities=12%  Similarity=0.182  Sum_probs=165.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC--CCceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~--tg~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~v~   75 (568)
                      +|+|++++|++|+.||.|+|||+.  +++.+..+.+ |...|.+++|+++  ++ +|++++.||.|++||+.++. ....
T Consensus        18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~   95 (379)
T 3jrp_A           18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIA   95 (379)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEee
Confidence            489999999999999999999997  5556667775 7788999999876  66 89999999999999998775 2366


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee---eEeecCCCeEEEEEec-------------CCCEE
Q 008356           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPS---SCITYEAPFSSLAFID-------------DDWIL  137 (568)
Q Consensus        76 ~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~v---~~~~h~~~ItsLafsP-------------dg~~L  137 (568)
                      .+..|...|.+++|+|+  +++|++++.|+.|++||++.+...   ....|...|.+++|+|             ++.+|
T Consensus        96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            77889999999999998  999999999999999999987433   2236889999999999             69999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEE-eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVL-RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l-~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      ++++.||.|++||++......... ...+|...|.+++|+|++         ..+.++++++.|+.|++||++..
T Consensus       176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---------~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------LLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------SSSEEEEEEETTSCEEEEEESST
T ss_pred             EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC---------CCCCeEEEEeCCCEEEEEeCCCC
Confidence            999999999999998765433222 234799999999999961         01445666677999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=9.4e-24  Score=217.14  Aligned_cols=199  Identities=14%  Similarity=0.180  Sum_probs=164.5

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEee------------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELK------------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT   67 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~------------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl   67 (568)
                      +|+| ++++|++|+.||.|+|||+.+++....+.            ..|...|.+++|+|++..+|++++.||.|++||+
T Consensus        50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  129 (408)
T 4a11_B           50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT  129 (408)
T ss_dssp             EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence            4889 99999999999999999998877554443            2377889999999955458999999999999999


Q ss_pred             CCCCceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC-EEEEEEc
Q 008356           68 TGRSPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTS  142 (568)
Q Consensus        68 ~t~~~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~-~LasGs~  142 (568)
                      .+.+. . ....+...+.++.|.+   ++.++++++.|+.|++||+++++.+..+ .|...|.+++|+|++. +|++++.
T Consensus       130 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          130 NTLQT-A-DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             TTTEE-E-EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCcc-c-eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence            88763 3 3334788899999998   4459999999999999999999888777 5889999999999988 5899999


Q ss_pred             CCeEEEEECCCCCCceEEEee-------------cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          143 NGRVVFYDIRGKPQPLTVLRA-------------CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       143 DG~V~VWDlrt~~~~v~~l~~-------------~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ||.|++||++....+...+..             ..|...|.+++|+|++++++++            +.|+.|++||++
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------~~dg~i~vwd~~  275 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV------------GTDNRMRLWNSS  275 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE------------ETTSCEEEEETT
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe------------cCCCeEEEEECC
Confidence            999999999987544444421             2688999999999976655544            569999999998


Q ss_pred             CCCc
Q 008356          210 PSVT  213 (568)
Q Consensus       210 ~~~~  213 (568)
                      ....
T Consensus       276 ~~~~  279 (408)
T 4a11_B          276 NGEN  279 (408)
T ss_dssp             TCCB
T ss_pred             CCcc
Confidence            7553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=8.2e-24  Score=211.88  Aligned_cols=194  Identities=14%  Similarity=0.166  Sum_probs=163.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce---eEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK---AAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~---v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~   75 (568)
                      +|+|++++|++++ ||.|++||+.+++.   +..+.. .|...|.+++|+|+++ +|++++.||.|++||+...+. ...
T Consensus        58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceee
Confidence            4889999999998 99999999987653   233331 3778899999999997 899999999999999987653 355


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.||.|++||+++.
T Consensus       136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  215 (337)
T 1gxr_A          136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence            67789999999999999999999999999999999999888777 58899999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      . ....+   .|...+.+++|+|++++++++            +.|+.|++||++...
T Consensus       216 ~-~~~~~---~~~~~v~~~~~s~~~~~l~~~------------~~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          216 R-QLQQH---DFTSQIFSLGYCPTGEWLAVG------------MESSNVEVLHVNKPD  257 (337)
T ss_dssp             E-EEEEE---ECSSCEEEEEECTTSSEEEEE------------ETTSCEEEEETTSSC
T ss_pred             c-eEeee---cCCCceEEEEECCCCCEEEEE------------cCCCcEEEEECCCCC
Confidence            3 23333   477899999999976655544            558899999987644

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=2e-24  Score=225.22  Aligned_cols=207  Identities=13%  Similarity=0.151  Sum_probs=169.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|++||+.+++....+.. + ..+....|+++++ +|++|+.||.|++||+.+.. ....+..|
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~h  138 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-A-DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNL-QREIDQAH  138 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-C-CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCE-EEEETTSS
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccceeeEEec-C-CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcc-eeeecccc
Confidence            4889999999999999999999987776655554 2 5566667899987 89999999999999998776 35666799


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|++++|+|++++|++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.|+.|++||+++.. ...
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~  217 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIH  217 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeE
Confidence            999999999999999999999999999999999888777 589999999999999999999999999999999874 344


Q ss_pred             EEee-cCCCCCeeEEEEccCCCeE---------EEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          160 VLRA-CSSSEAVSSLCWQRAKPVF---------IDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       160 ~l~~-~~h~~~VtsLafspdg~~L---------as~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .+.. ..|...|.+++|.+.+...         .......++.++++++.|+.|++||++...
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            4432 2467788888887653221         111123467788888889999999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=5.7e-24  Score=222.57  Aligned_cols=198  Identities=19%  Similarity=0.295  Sum_probs=169.2

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCC-------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASG-------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg-------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +|+| ++++|++|+.||.|+|||+.++       +.+..+.+ |...|.+++|+|+++++|++++.||.|++||+.+++.
T Consensus        88 ~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  166 (402)
T 2aq5_A           88 AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA  166 (402)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence            4789 8999999999999999999887       56777776 7788999999999866899999999999999998764


Q ss_pred             eeEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCC-eEEEEEecCCCEEEEE---EcCC
Q 008356           73 KVSWL--KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAP-FSSLAFIDDDWILTAG---TSNG  144 (568)
Q Consensus        73 ~v~~l--~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~-ItsLafsPdg~~LasG---s~DG  144 (568)
                       +..+  ..|...|++++|+|++++|++++.|+.|++||+++++.+..+  .|.+. +.+++|+|++++|++|   +.|+
T Consensus       167 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          167 -VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             -EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             -cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence             5566  789999999999999999999999999999999999888776  45554 8999999999999999   7899


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .|++||++....+..... ..|...|.+++|+|++++++           ++++.|+.|++||+....
T Consensus       246 ~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~-----------~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVY-----------LCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEE-----------EEETTCSCEEEEEECSST
T ss_pred             eEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEE-----------EEEcCCCeEEEEEecCCC
Confidence            999999998765544443 35778899999999866543           344569999999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.8e-24  Score=221.92  Aligned_cols=202  Identities=14%  Similarity=0.314  Sum_probs=166.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC----CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-----
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-----   71 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t----g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-----   71 (568)
                      +|+|++++|++++.||.|++||+.+    .+.+..+.. |...|.+++|+|++..+|++++.||.|++||+....     
T Consensus        74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             EECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence            4899999999999999999999987    346667765 777899999999844489999999999999998765     


Q ss_pred             -ce--eEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeEeec-------CCCeEEEEEecCC-CEEEE
Q 008356           72 -PK--VSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCITY-------EAPFSSLAFIDDD-WILTA  139 (568)
Q Consensus        72 -~~--v~~l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~~h-------~~~ItsLafsPdg-~~Las  139 (568)
                       ..  ......|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..       ...|.+++|+|++ .+|++
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence             22  2234679999999999998 79999999999999999999988877743       6889999999997 69999


Q ss_pred             EEcCC---eEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356          140 GTSNG---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS  215 (568)
Q Consensus       140 Gs~DG---~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~  215 (568)
                      ++.|+   .|++||++....+...+. .+|...|.+++|+| ++++|            ++++.|+.|++||++......
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l------------~s~~~dg~v~~wd~~~~~~~~  299 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLL------------LSSGRDNTVLLWNPESAEQLS  299 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCE------------EEEESSSEEEEECSSSCCEEE
T ss_pred             EECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeE------------EEEeCCCCEEEeeCCCCccce
Confidence            99998   999999998654444332 15889999999999 55554            444669999999998765443


Q ss_pred             c
Q 008356          216 S  216 (568)
Q Consensus       216 s  216 (568)
                      .
T Consensus       300 ~  300 (416)
T 2pm9_A          300 Q  300 (416)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.92  E-value=2.8e-23  Score=209.06  Aligned_cols=195  Identities=15%  Similarity=0.175  Sum_probs=162.3

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCCCc-----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            1 MYNCK-DEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpd-G~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      +|+|+ +++|++|+.||+|+|||+.+.+     ....+.+ |...|.+++|+|+++ +|++++.|+.|++|+...... .
T Consensus        45 ~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~-~  121 (340)
T 4aow_A           45 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTT-T  121 (340)
T ss_dssp             EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCC-EEEEEcccccceEEeecccce-e
Confidence            48887 5899999999999999997654     3455665 778899999999998 899999999999999987763 5


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEE
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYD  150 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPd--g~~LasGs~DG~V~VWD  150 (568)
                      .....+...+..+.+.+++++|++++.|+.+++||+.........  .|...+.+++|+++  ..++++++.|+.|++||
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d  201 (340)
T 4aow_A          122 RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN  201 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred             eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence            566778888999999999999999999999999999876554433  57889999999986  46788999999999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ++... ....+.  +|...|++++|+|++++|+            +++.|+.|++||++....
T Consensus       202 ~~~~~-~~~~~~--~h~~~v~~~~~s~~~~~l~------------s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          202 LANCK-LKTNHI--GHTGYLNTVTVSPDGSLCA------------SGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             TTTTE-EEEEEC--CCSSCEEEEEECTTSSEEE------------EEETTCEEEEEETTTTEE
T ss_pred             CCCCc-eeeEec--CCCCcEEEEEECCCCCEEE------------EEeCCCeEEEEEeccCce
Confidence            99873 334444  7999999999999766554            446699999999986544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.92  E-value=6.2e-23  Score=215.20  Aligned_cols=193  Identities=16%  Similarity=0.267  Sum_probs=163.3

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      .++++.+++++.||.|++||+.+++....+...|...|.+++|+|+++ +|++|+.||.|++||+.+.+ .+..+..|..
T Consensus       100 ~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  177 (401)
T 4aez_A          100 DWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQT-KLRTMAGHQA  177 (401)
T ss_dssp             EECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-EEEEECCCSS
T ss_pred             eecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCe-EEEEecCCCC
Confidence            334566888999999999999999998888877888999999999997 89999999999999998876 4677889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      .|.+++|+  +++|++++.|+.|++||++. ...+..+ .|...|.+++|+|++++|++|+.|+.|++||+++.. +...
T Consensus       178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~  254 (401)
T 4aez_A          178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFT  254 (401)
T ss_dssp             CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEE
T ss_pred             ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEE
Confidence            99999994  67999999999999999994 4445454 689999999999999999999999999999999863 3444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe--cCCCcEEcCCCCCCCc
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG--AVGDSILMPDPLPSVT  213 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~--s~Dg~V~VWDlr~~~~  213 (568)
                      +.  .|...|.+++|+|++..+           ++++  +.|+.|++||++....
T Consensus       255 ~~--~~~~~v~~~~~~p~~~~l-----------l~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          255 KT--NHNAAVKAVAWCPWQSNL-----------LATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             EC--CCSSCCCEEEECTTSTTE-----------EEEECCTTTCEEEEEETTTCCE
T ss_pred             ec--CCcceEEEEEECCCCCCE-----------EEEecCCCCCEEEEEECCCCCE
Confidence            44  789999999999975443           3333  3699999999976543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=1.1e-23  Score=214.76  Aligned_cols=198  Identities=14%  Similarity=0.180  Sum_probs=165.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l   77 (568)
                      +|+|++++|++++.||.|+|||+.+++  .+..+.+ |...|.+++|+|+++ +|++++.||.|++||+...+.. ...+
T Consensus        15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~   92 (372)
T 1k8k_C           15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI   92 (372)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCCeeeeeEEe
Confidence            489999999999999999999998887  7778876 778899999999998 8999999999999999776522 3345


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~---v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      ..|...|.+++|+|++++|++++.|+.|++||++.++.   ...+  .|...|.+++|+|++++|++++.||.|++||++
T Consensus        93 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C           93 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence            77999999999999999999999999999999998763   2222  478899999999999999999999999999975


Q ss_pred             C-----------------CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          153 G-----------------KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       153 t-----------------~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      .                 ....+..+.  .|...|.+++|+|++++|+            +++.|+.|++||++.....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~------------~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          173 IKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVA------------WVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEE------------EEETTTEEEEEEGGGTTEE
T ss_pred             cccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEE------------EEeCCCEEEEEECCCCcee
Confidence            2                 113333333  7899999999999765544            4466999999999865543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=9.6e-24  Score=213.56  Aligned_cols=197  Identities=12%  Similarity=0.208  Sum_probs=160.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-eeEEeeCCC---CCcEEEEE----EccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPN---EQVLRVLD----YSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h---~~~Vs~La----fspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +|++++++|++++.||.|++||+.+++ .+..+..+.   ...+.+++    |+++++ +|++++.||.|++||++..+ 
T Consensus       124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-  201 (357)
T 3i2n_A          124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMA-  201 (357)
T ss_dssp             GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTE-
T ss_pred             ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCc-
Confidence            378999999999999999999999887 667775432   34788888    678887 89999999999999998877 


Q ss_pred             eeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeEe------ecCCCeEEEEEecCCC-EEEEEEc
Q 008356           73 KVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFIDDDW-ILTAGTS  142 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~~v~~~------~h~~~ItsLafsPdg~-~LasGs~  142 (568)
                       ......|...|.+++|+|   ++++|++++.|+.|++||+++++.+..+      .|...|.+++|+|++. +|++++.
T Consensus       202 -~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  280 (357)
T 3i2n_A          202 -LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG  280 (357)
T ss_dssp             -EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             -eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC
Confidence             345577899999999999   9999999999999999999887654433      5889999999999998 8999999


Q ss_pred             CCeEEEEECCCCCCc----------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356          143 NGRVVFYDIRGKPQP----------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       143 DG~V~VWDlrt~~~~----------------v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW  206 (568)
                      ||.|++||++.....                ........|...|++++|+|++++|+           ++++.|+.|++|
T Consensus       281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-----------~s~~~d~~i~iw  349 (357)
T 3i2n_A          281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC-----------VCSSFDQTVRVL  349 (357)
T ss_dssp             TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE-----------EEEETTSEEEEE
T ss_pred             CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE-----------EEecCCCcEEEE
Confidence            999999999865332                12222337999999999999876654           234669999999


Q ss_pred             CCCCC
Q 008356          207 DPLPS  211 (568)
Q Consensus       207 Dlr~~  211 (568)
                      |+...
T Consensus       350 ~~~~~  354 (357)
T 3i2n_A          350 IVTKL  354 (357)
T ss_dssp             EECC-
T ss_pred             ECCCc
Confidence            98764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.92  E-value=5.3e-23  Score=215.74  Aligned_cols=192  Identities=17%  Similarity=0.259  Sum_probs=161.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+++|+  +. +|++++.||.|++||++.....+..+..|
T Consensus       141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            4899999999999999999999999999998886 77889999995  34 89999999999999998665567888999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCC-CEEEEEE--cCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGT--SNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg-~~LasGs--~DG~V~VWDlrt~~~  156 (568)
                      ...|.+++|+|++++|++++.|+.|++||+++++++..+ .|...|.+++|+|++ .++++++  .|+.|++||+++.. 
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-  295 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-  295 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-
Confidence            999999999999999999999999999999999888777 688999999999976 5666655  79999999999873 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ++..+   .+...|.+++|+|++++++++.          +..|+.|++||+..
T Consensus       296 ~~~~~---~~~~~v~~~~~s~~~~~l~~~~----------g~~dg~i~v~~~~~  336 (401)
T 4aez_A          296 RVNTV---DAGSQVTSLIWSPHSKEIMSTH----------GFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEEE---ECSSCEEEEEECSSSSEEEEEE----------CTTTCEEEEEEEET
T ss_pred             EEEEE---eCCCcEEEEEECCCCCeEEEEe----------ecCCCcEEEEecCC
Confidence            34444   3678899999999887776531          22356666666544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.4e-23  Score=211.94  Aligned_cols=196  Identities=13%  Similarity=0.192  Sum_probs=162.9

Q ss_pred             ccCC--CCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-cee
Q 008356            2 YNCK--DEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKV   74 (568)
Q Consensus         2 fSpd--G~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~v   74 (568)
                      |+++  +++|++++.||.|+|||+.+++  .+..+.. |...|.+++|+|+  +. +|++++.|+.|++||+.... ...
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~  140 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP  140 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee
Confidence            6666  8999999999999999999887  5555654 7788999999999  76 89999999999999998763 235


Q ss_pred             EEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCcee----eEe-ecCCCeEEEEEecC---
Q 008356           75 SWLKQHSAPTAGISFSS-------------DDKIIASVGLDKKLYTYDPGSRRPS----SCI-TYEAPFSSLAFIDD---  133 (568)
Q Consensus        75 ~~l~~H~~~VtslafsP-------------dg~~LaSgs~DGtV~IWDlrt~~~v----~~~-~h~~~ItsLafsPd---  133 (568)
                      ..+..|...|.+++|+|             ++.+|++++.|+.|++||++++...    ..+ .|...|.+++|+|+   
T Consensus       141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  220 (379)
T 3jrp_A          141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  220 (379)
T ss_dssp             EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence            56778999999999999             6999999999999999999876532    233 58899999999999   


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          134 DWILTAGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       134 g~~LasGs~DG~V~VWDlrt~~~~v--~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      +++|++++.||.|+|||++....+.  ..+....|...|.+++|+|++++|+++            +.|+.|++||+...
T Consensus       221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------------~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS------------GGDNKVTLWKENLE  288 (379)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE------------ESSSSEEEEEEEET
T ss_pred             CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe------------cCCCcEEEEeCCCC
Confidence            8999999999999999999864332  233333588999999999987665554            55999999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=220.35  Aligned_cols=193  Identities=14%  Similarity=0.224  Sum_probs=155.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----------eeEEeeCCCC------------CcEEEEEEccCCC-eEEEEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA-----------KAAELKDPNE------------QVLRVLDYSRNSR-HLLVTA   56 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~-----------~v~~l~~~h~------------~~Vs~Lafspdg~-~lLaTg   56 (568)
                      +|+|+|++||+|+.||.|+|||+.+++           ....+.+ |.            ..|.+++|+|++. .+|+++
T Consensus        35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~  113 (447)
T 3dw8_B           35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLS  113 (447)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCCCcceEEEe
Confidence            489999999999999999999998776           4677876 55            7799999999973 379999


Q ss_pred             eCCCeEEEEECCCCCce---------------------------------------eEEeccCCCCeEEEEEcCCCCEEE
Q 008356           57 GDDGTLHLWDTTGRSPK---------------------------------------VSWLKQHSAPTAGISFSSDDKIIA   97 (568)
Q Consensus        57 s~DGtV~VWDl~t~~~~---------------------------------------v~~l~~H~~~VtslafsPdg~~La   97 (568)
                      +.|+.|++||+......                                       .....+|...|++++|+|++++|+
T Consensus       114 s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  193 (447)
T 3dw8_B          114 TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYL  193 (447)
T ss_dssp             ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEE
T ss_pred             CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEE
Confidence            99999999998653210                                       122468999999999999999999


Q ss_pred             EEeCCCeEEEEECCC-CceeeEe--------ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCc---eEEEeec
Q 008356           98 SVGLDKKLYTYDPGS-RRPSSCI--------TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQP---LTVLRAC  164 (568)
Q Consensus        98 Sgs~DGtV~IWDlrt-~~~v~~~--------~h~~~ItsLafsPdg-~~LasGs~DG~V~VWDlrt~~~~---v~~l~~~  164 (568)
                      ++ .|+.|++||++. ++.+..+        .|...|.+++|+|++ ++|++|+.||.|++||++.....   ...+.  
T Consensus       194 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--  270 (447)
T 3dw8_B          194 SA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--  270 (447)
T ss_dssp             EE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC--
T ss_pred             Ee-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec--
Confidence            98 899999999994 4444432        588899999999998 99999999999999999987531   45555  


Q ss_pred             CCCC------------CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          165 SSSE------------AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       165 ~h~~------------~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .|..            .|.+++|+|++++|+++            +. +.|++||++.
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------------~~-~~v~iwd~~~  315 (447)
T 3dw8_B          271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR------------DY-LSVKVWDLNM  315 (447)
T ss_dssp             CC-----CCHHHHHTTCEEEEEECTTSSEEEEE------------ES-SEEEEEETTC
T ss_pred             cCCCccccccccccCceEEEEEECCCCCEEEEe------------eC-CeEEEEeCCC
Confidence            5554            89999999976665444            55 9999999976

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=3.4e-23  Score=225.21  Aligned_cols=187  Identities=21%  Similarity=0.334  Sum_probs=161.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|++||. +++.+..+.+ |...|.+++|+|+++ +|++++.|+.|++||....  .+..+.+|
T Consensus       351 ~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~--~~~~~~~~  425 (577)
T 2ymu_A          351 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ--LLQTLTGH  425 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCC--EEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCC--EEEEecCC
Confidence            47899999999999999999995 6778888886 677899999999998 7999999999999997543  36778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ...|++++|+|++++|++++.|+.|++||+..........|...|.+++|+|++++|++++.|+.|++||...  +.+..
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~  503 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQT  503 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEE
Confidence            9999999999999999999999999999975443333447999999999999999999999999999999654  34455


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +.  +|...|++++|+|++++|+++            +.|+.|++||.
T Consensus       504 ~~--~h~~~v~~l~~s~dg~~l~s~------------~~dg~v~lwd~  537 (577)
T 2ymu_A          504 LT--GHSSSVRGVAFSPDGQTIASA------------SDDKTVKLWNR  537 (577)
T ss_dssp             EE--CCSSCEEEEEECTTSSCEEEE------------ETTSEEEEECT
T ss_pred             Ee--CCCCCEEEEEEcCCCCEEEEE------------ECcCEEEEEeC
Confidence            55  899999999999987766555            56999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=8.6e-24  Score=218.30  Aligned_cols=201  Identities=16%  Similarity=0.153  Sum_probs=167.2

Q ss_pred             CCCCE-EEEEECCCcEEEEECCC------CceeE-----Eee------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 008356            4 CKDEH-LASISLSGDLILHNLAS------GAKAA-----ELK------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW   65 (568)
Q Consensus         4 pdG~~-LasGs~DG~V~VWDl~t------g~~v~-----~l~------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW   65 (568)
                      |++++ |++++.||.|++||+.+      ++.+.     .+.      ..|...|.+++|+|++  +|++++.||.|++|
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS  212 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEE
Confidence            89999 99999999999999988      66655     664      3467788999999998  79999999999999


Q ss_pred             ECCCCCceeEEecc---C---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeEe-e-------------cC
Q 008356           66 DTTGRSPKVSWLKQ---H---SAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCI-T-------------YE  122 (568)
Q Consensus        66 Dl~t~~~~v~~l~~---H---~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~~-~-------------h~  122 (568)
                      |++..+ .+..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+ .             |.
T Consensus       213 d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (397)
T 1sq9_A          213 ELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS  291 (397)
T ss_dssp             ETTTTE-EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred             ECCCCc-eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence            998876 4666777   8   9999999999999999999999   99999999999888777 4             88


Q ss_pred             CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec----CC---------------CCCeeEEEEccCCCeEE
Q 008356          123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SS---------------SEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       123 ~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~----~h---------------~~~VtsLafspdg~~La  183 (568)
                      ..|.+++|+|++++|++++.||.|+|||++... ++..+...    .|               ...|++++|+|++++++
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~  370 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG  370 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-eeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence            999999999999999999999999999999873 34444311    35               89999999999986665


Q ss_pred             EeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          184 DETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       184 s~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .+  ..+..+|++++.|+.|++||+..
T Consensus       371 ~~--~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          371 MG--ADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TT--CTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cc--ccccceEEEecCCCcEEEEEcCC
Confidence            54  23456788888899999999754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9.4e-23  Score=206.37  Aligned_cols=194  Identities=13%  Similarity=0.178  Sum_probs=159.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeC----------------------------------------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD----------------------------------------------   34 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~----------------------------------------------   34 (568)
                      +|+|++++|++++.||.|++||+.+++.+..+..                                              
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~  160 (369)
T 3zwl_B           81 DVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK  160 (369)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence            3677788888888888888888777665544431                                              


Q ss_pred             ----------CCCC--cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 008356           35 ----------PNEQ--VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD  102 (568)
Q Consensus        35 ----------~h~~--~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D  102 (568)
                                .+..  .+.+++|+++++ +|++++.||.|++||+......+..+..|...|.+++|+|++++|++++.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  239 (369)
T 3zwl_B          161 VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD  239 (369)
T ss_dssp             ECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence                      0111  567777777776 788888999999999987544577788899999999999999999999999


Q ss_pred             CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEECCCCCCceEEEeecCCCC
Q 008356          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG--------------RVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus       103 GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG--------------~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      +.|++||+++++.+..+.+...+.+++|+|+++++++++.++              .|++||+.... ++..+.  +|..
T Consensus       240 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~--~~~~  316 (369)
T 3zwl_B          240 TNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE-EIGRVQ--GHFG  316 (369)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC-EEEEEE--CCSS
T ss_pred             ceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc-chhhee--cccC
Confidence            999999999999999999999999999999999999999988              89999999874 445555  7999


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .|++++|+|++++|++            ++.|+.|++||+..
T Consensus       317 ~v~~~~~s~~~~~l~s------------~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          317 PLNTVAISPQGTSYAS------------GGEDGFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEECTTSSEEEE------------EETTSEEEEEEECH
T ss_pred             cEEEEEECCCCCEEEE------------EcCCCeEEEEECcc
Confidence            9999999997665544            46699999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=2.6e-24  Score=219.38  Aligned_cols=192  Identities=15%  Similarity=0.210  Sum_probs=155.6

Q ss_pred             ccC--CCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCc--e
Q 008356            2 YNC--KDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSP--K   73 (568)
Q Consensus         2 fSp--dG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~~--~   73 (568)
                      |++  ++++|++|+.|++|+|||+++++  .+..+.+ |...|.+++|+|+  +. +|++|+.|+.|++||+.....  .
T Consensus        65 ~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           65 WAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG-HDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             ECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECC-CSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEE
T ss_pred             eCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccC-CCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcce
Confidence            554  48999999999999999998774  4555665 7778999999998  54 899999999999999986532  1


Q ss_pred             eEEeccCCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEECCCC---ceeeEe-ecCCCeEEEEEec
Q 008356           74 VSWLKQHSAPTAGISFSSD-----------------DKIIASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFID  132 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPd-----------------g~~LaSgs~DGtV~IWDlrt~---~~v~~~-~h~~~ItsLafsP  132 (568)
                      ...+..|...|.+++|+|+                 +++|++++.|++|++||++..   +++..+ .|...|.+++|+|
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp  222 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP  222 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence            3456789999999999997                 478999999999999999765   234444 6889999999999


Q ss_pred             CC----CEEEEEEcCCeEEEEECCCCC---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356          133 DD----WILTAGTSNGRVVFYDIRGKP---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       133 dg----~~LasGs~DG~V~VWDlrt~~---~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      ++    ++|++++.|+.|+|||++...   .....+.  .|...|.+++|+|++++|+++            +.|+.|++
T Consensus       223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~------------~~D~~v~l  288 (316)
T 3bg1_A          223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVS------------GGDNKVTL  288 (316)
T ss_dssp             CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEE------------ESSSCEEE
T ss_pred             CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEE------------cCCCeEEE
Confidence            86    899999999999999998631   1223344  578999999999987666555            56999999


Q ss_pred             CCCC
Q 008356          206 PDPL  209 (568)
Q Consensus       206 WDlr  209 (568)
                      |++.
T Consensus       289 w~~~  292 (316)
T 3bg1_A          289 WKES  292 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=7.1e-24  Score=214.83  Aligned_cols=193  Identities=14%  Similarity=0.174  Sum_probs=162.6

Q ss_pred             ccCC----CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            2 YNCK----DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         2 fSpd----G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      |+|+    +++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+| ++. +|++++.||.|++||+...+. +..
T Consensus        77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~  153 (366)
T 3k26_A           77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTL-VAI  153 (366)
T ss_dssp             EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEE-EEE
T ss_pred             eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeE-EEE
Confidence            6777    67999999999999999999999999886 778899999999 665 899999999999999988763 445


Q ss_pred             e---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-----------------------------cCCC
Q 008356           77 L---KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----------------------------YEAP  124 (568)
Q Consensus        77 l---~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-----------------------------h~~~  124 (568)
                      +   ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.                             |...
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence            5   6899999999999999999999999999999999876543331                             8889


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-------------ceEEEeecCCCCCeeEEEEccC--CCeEEEeccCC
Q 008356          125 FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-------------PLTVLRACSSSEAVSSLCWQRA--KPVFIDETTCK  189 (568)
Q Consensus       125 ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~-------------~v~~l~~~~h~~~VtsLafspd--g~~Las~s~ss  189 (568)
                      |.+++|+  +++|++++.|+.|++||++....             .+..+.  .|...|++++|+|+  +++        
T Consensus       234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~--------  301 (366)
T 3k26_A          234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKM--------  301 (366)
T ss_dssp             CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSE--------
T ss_pred             EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcE--------
Confidence            9999999  77999999999999999987643             123333  78889999999996  544        


Q ss_pred             CCeEEEEecCCCcEEcCCCCCCCc
Q 008356          190 AETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       190 d~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                          |++++.|+.|++||+.....
T Consensus       302 ----l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          302 ----LALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             ----EEEECTTSCEEEEECCSSSG
T ss_pred             ----EEEEecCCcEEEEECCCCCC
Confidence                45556799999999977543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=1.2e-22  Score=214.68  Aligned_cols=197  Identities=13%  Similarity=0.210  Sum_probs=159.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeC----------------------------------------CCCCcE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD----------------------------------------PNEQVL   40 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~----------------------------------------~h~~~V   40 (568)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+                                        .|...+
T Consensus       154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~  233 (420)
T 4gga_A          154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  233 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence            4899999999999999999999998876655543                                        233445


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEeccCCCCeEEEEEcC-CCCEEEEE--eCCCeEEEEECCCCc
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQHSAPTAGISFSS-DDKIIASV--GLDKKLYTYDPGSRR  114 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~v~~l~~H~~~VtslafsP-dg~~LaSg--s~DGtV~IWDlrt~~  114 (568)
                      ..+.|.+++. ++++++.|+.|++||....+.   .+.....|...|.+++|+| +..+++++  +.|++|++||+++++
T Consensus       234 ~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~  312 (420)
T 4gga_A          234 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  312 (420)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred             eeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence            5666777776 677888888888888765432   2456678999999999999 55666654  479999999999999


Q ss_pred             eeeEeecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356          115 PSSCITYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (568)
Q Consensus       115 ~v~~~~h~~~ItsLafsPdg~~LasGs--~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~  192 (568)
                      ++..+.+...+.++.|+++++.+++++  .|+.|+|||+++.. ++..+.  +|.+.|++++|+|+|++|+++       
T Consensus       313 ~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~-~v~~l~--gH~~~V~~l~~spdg~~l~S~-------  382 (420)
T 4gga_A          313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELK--GHTSRVLSLTMSPDGATVASA-------  382 (420)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEEC--CCSSCEEEEEECTTSSCEEEE-------
T ss_pred             cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-EEEEEc--CCCCCEEEEEEcCCCCEEEEE-------
Confidence            999998888999999999999988876  78999999999874 455555  899999999999987665554       


Q ss_pred             EEEEecCCCcEEcCCCCCCCc
Q 008356          193 ALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                           +.|++|++||+....+
T Consensus       383 -----s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          383 -----AADETLRLWRCFELDP  398 (420)
T ss_dssp             -----ETTTEEEEECCSCSSC
T ss_pred             -----ecCCeEEEEECCCCCc
Confidence                 6699999999976554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=1.3e-22  Score=241.38  Aligned_cols=151  Identities=18%  Similarity=0.319  Sum_probs=139.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|+|++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++++.||.|+|||+.+++ .+..+.+|
T Consensus       622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~-~~~~~~~~  698 (1249)
T 3sfz_A          622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGK-LVHTYDEH  698 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCc-eEEEEcCC
Confidence            4899999999999999999999999999999986 778899999999998 89999999999999999887 47778899


Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           81 SAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        81 ~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      ...|.+++|+|  ++.++++++.|+.|++||+++++++..+ .|...|.+++|+|++++|++++.||.|++||++..
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence            99999999999  6678999999999999999999988776 68999999999999999999999999999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.8e-23  Score=212.01  Aligned_cols=192  Identities=21%  Similarity=0.301  Sum_probs=156.1

Q ss_pred             CccCCCC-EEEEEECCCcEEEEEC----CCCc------eeEEeeC----C-----CCCcEEEEEEccCCCeEEEEEeCCC
Q 008356            1 MYNCKDE-HLASISLSGDLILHNL----ASGA------KAAELKD----P-----NEQVLRVLDYSRNSRHLLVTAGDDG   60 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl----~tg~------~v~~l~~----~-----h~~~Vs~Lafspdg~~lLaTgs~DG   60 (568)
                      +|+|+++ +|++|+.||.|++||+    .+++      ....+..    +     |...|.+++|+|+++ +|++++.||
T Consensus        52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg  130 (425)
T 1r5m_A           52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENG  130 (425)
T ss_dssp             EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-EEEEEETTS
T ss_pred             EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-EEEEEeCCC
Confidence            4899999 9999999999999999    8887      4444442    1     566899999999997 899999999


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCC---------------
Q 008356           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAP---------------  124 (568)
Q Consensus        61 tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~---------------  124 (568)
                      .|++||....  .+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +...               
T Consensus       131 ~i~i~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (425)
T 1r5m_A          131 ELRLWNKTGA--LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL  208 (425)
T ss_dssp             CEEEEETTSC--EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCC
T ss_pred             eEEEEeCCCC--eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcce
Confidence            9999994433  477788999999999999999999999999999999999998887774 3333               


Q ss_pred             eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          125 FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       125 ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      +.+++|++++ .+++++.||.|++||++... +...+.  .|...|.+++|+|++++|++            ++.|+.|+
T Consensus       209 ~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-~~~~~~--~~~~~i~~~~~~~~~~~l~~------------~~~d~~i~  272 (425)
T 1r5m_A          209 GVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-PTGKLI--GHHGPISVLEFNDTNKLLLS------------ASDDGTLR  272 (425)
T ss_dssp             BSCCEEEETT-EEEEECGGGCEEEEETTCSS-CSEEEC--CCSSCEEEEEEETTTTEEEE------------EETTSCEE
T ss_pred             eeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-eeeeec--cCCCceEEEEECCCCCEEEE------------EcCCCEEE
Confidence            8999999975 68899999999999999874 445554  78999999999997655544            45699999


Q ss_pred             cCCCCCC
Q 008356          205 MPDPLPS  211 (568)
Q Consensus       205 VWDlr~~  211 (568)
                      +||++..
T Consensus       273 i~d~~~~  279 (425)
T 1r5m_A          273 IWHGGNG  279 (425)
T ss_dssp             EECSSSB
T ss_pred             EEECCCC
Confidence            9998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=3e-23  Score=209.90  Aligned_cols=178  Identities=19%  Similarity=0.294  Sum_probs=149.0

Q ss_pred             CccCC---CCEEEEEECCCcEEEEECCC-Ccee-EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            1 MYNCK---DEHLASISLSGDLILHNLAS-GAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpd---G~~LasGs~DG~V~VWDl~t-g~~v-~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      +|+|+   |++|++|+.||.|+|||+.+ ++.+ ..+.+ |...|.+++|+|+++ +|++++.||.|++||+.+..  ..
T Consensus        46 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~--~~  121 (368)
T 3mmy_A           46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGS-KVFTASCDKTAKMWDLSSNQ--AI  121 (368)
T ss_dssp             EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE--EE
T ss_pred             EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCC-EEEEEcCCCcEEEEEcCCCC--ce
Confidence            47888   69999999999999999987 5555 55554 788899999999998 89999999999999998876  44


Q ss_pred             EeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCCceeeEee---------------------------------
Q 008356           76 WLKQHSAPTAGISF--SSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------------------------------  120 (568)
Q Consensus        76 ~l~~H~~~Vtslaf--sPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------------------------------  120 (568)
                      .+..|...|++++|  ++++++|++++.|+.|++||+++++++..+.                                 
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  201 (368)
T 3mmy_A          122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQP  201 (368)
T ss_dssp             EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSC
T ss_pred             eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecccc
Confidence            46789999999999  8899999999999999999998764321110                                 


Q ss_pred             ----------------------------------------------------------cCC------------CeEEEEE
Q 008356          121 ----------------------------------------------------------YEA------------PFSSLAF  130 (568)
Q Consensus       121 ----------------------------------------------------------h~~------------~ItsLaf  130 (568)
                                                                                |..            .|.+++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (368)
T 3mmy_A          202 SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF  281 (368)
T ss_dssp             EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred             chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence                                                                      111            5999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       131 sPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +|++++|++++.||.|+|||+++.. .+..+.  .|...|++++|+|++++|+++
T Consensus       282 sp~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~--~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          282 HPVHGTLATVGSDGRFSFWDKDART-KLKTSE--QLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             CTTTCCEEEEETTSCEEEEETTTTE-EEEECC--CCSSCEEEEEECTTSSCEEEE
T ss_pred             ecCCCEEEEEccCCeEEEEECCCCc-EEEEec--CCCCCceEEEECCCCCeEEEE
Confidence            9999999999999999999999863 344444  789999999999988887776

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=5.3e-23  Score=209.71  Aligned_cols=193  Identities=8%  Similarity=0.027  Sum_probs=162.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEee-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~-~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~v~~   76 (568)
                      +|+|++++|++++.||.|++||+.+++....+. ..|...|.+++|+++++ +|++++.|+.|++||++....   ....
T Consensus        59 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           59 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeee
Confidence            478999999999999999999998887554443 33678899999999997 899999999999999987653   2334


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC------------------CCceeeEe-ecCCCeEEEEEecCCCEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG------------------SRRPSSCI-TYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr------------------t~~~v~~~-~h~~~ItsLafsPdg~~L  137 (568)
                      ...|...|.+++|+|++++|++++.|+.|++||++                  .++.+..+ .|...|.+++|+|++++|
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  217 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  217 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence            46789999999999999999999999999999964                  56666666 688899999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ++++.|+.|++||+++.. ++..+.  .|...|.+++|+|+++++            +++ .|+.|++||++.
T Consensus       218 ~~~~~d~~i~i~d~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~l------------~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          218 AWVSHDSTVCLADADKKM-AVATLA--SETLPLLAVTFITESSLV------------AAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEETTTEEEEEEGGGTT-EEEEEE--CSSCCEEEEEEEETTEEE------------EEE-TTSSCEEEEEET
T ss_pred             EEEeCCCEEEEEECCCCc-eeEEEc--cCCCCeEEEEEecCCCEE------------EEE-eCCeEEEEEccC
Confidence            999999999999999874 455555  788899999999975444            333 589999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.91  E-value=5.5e-23  Score=215.04  Aligned_cols=198  Identities=12%  Similarity=0.164  Sum_probs=157.7

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCC----
Q 008356            2 YNCKDEHL-ASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRS----   71 (568)
Q Consensus         2 fSpdG~~L-asGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~t~~----   71 (568)
                      ++|+...+ ++++.||.|+||++....    .+..+.+ |...|.+++|+| +++ +|++|+.||.|+|||+....    
T Consensus        42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTT-EEEEEETTSEEEEEECCTTCCSSC
T ss_pred             ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCC-EEEEEeCCCeEEEEEccCCCCccc
Confidence            34444333 347889999999986542    2334444 788999999999 665 89999999999999998763    


Q ss_pred             --ceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           72 --PKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        72 --~~v~~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                        ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+   .|...|.+++|+|++++|++++.||.
T Consensus       120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  199 (402)
T 2aq5_A          120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR  199 (402)
T ss_dssp             BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE
T ss_pred             cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc
Confidence              2366788999999999999987 79999999999999999999988777   38889999999999999999999999


Q ss_pred             EEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~-VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |++||+++.. .+..+. ..|.+. +.++.|+|++++++++..         .+.|+.|++||++...
T Consensus       200 i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~---------~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          200 VRVIEPRKGT-VVAEKD-RPHEGTRPVHAVFVSEGKILTTGFS---------RMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEETTTTE-EEEEEE-CSSCSSSCCEEEECSTTEEEEEEEC---------TTCCEEEEEEETTBCS
T ss_pred             EEEEeCCCCc-eeeeec-cCCCCCcceEEEEcCCCcEEEEecc---------CCCCceEEEEcCcccc
Confidence            9999999874 333331 256665 899999997655444310         0469999999997654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-23  Score=231.66  Aligned_cols=187  Identities=12%  Similarity=0.214  Sum_probs=155.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCce-----------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            6 DEHLASISLSGDLILHNLASGAK-----------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~-----------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      +++||+++.||+|+|||+.+++.           ...+.+ |...|.+++|++++  +|++|+.||+|++||+.+.....
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~  301 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPS  301 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCS
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCce
Confidence            68999999999999999976642           234554 67889999999853  79999999999999998765445


Q ss_pred             EEeccCCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe-ecC--CCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           75 SWLKQHSAPTAGI--SFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYE--APFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        75 ~~l~~H~~~Vtsl--afsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~--~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      ..+..|...|++|  .|++++ ++|++++.|++|++||+++++++..+ .|.  ..|.+++|+|+++.|++++.|+.|++
T Consensus       302 ~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l  381 (524)
T 2j04_B          302 FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA  381 (524)
T ss_dssp             EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred             EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence            6688999999999  567787 89999999999999999988776555 343  35889999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ||++.... ...+.  +|.+.|++|+|+|++++|+++            +.|++|++||+..
T Consensus       382 wd~~~~~~-~~~l~--gH~~~V~sva~Sp~g~~l~Sg------------s~Dgtv~lwd~~~  428 (524)
T 2j04_B          382 VPSRAAFA-VHPLV--SRETTITAIGVSRLHPMVLAG------------SADGSLIITNAAR  428 (524)
T ss_dssp             EETTCTTC-CEEEE--ECSSCEEEEECCSSCCBCEEE------------ETTTEEECCBSCS
T ss_pred             EECccccc-ceeee--cCCCceEEEEeCCCCCeEEEE------------ECCCEEEEEechH
Confidence            99998754 34444  699999999999987665554            6699999999743

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=7.9e-23  Score=231.59  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=168.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|+|||+.+++.+..+.. |...|.+++|+|+++ +|++++.||.|++||+.+++ .+..+..|
T Consensus        20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~-~~~~~~~~   96 (814)
T 3mkq_A           20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGE-KVVDFEAH   96 (814)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCC-EEEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc-EEEEEecC
Confidence            4899999999999999999999999999999986 778899999999998 89999999999999998887 46778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      ...|++++|+|++.+|++++.|+.|++||++++ .....+ .|...|.+++|+| ++.+|++++.||.|++||++.....
T Consensus        97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A           97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            999999999999999999999999999999987 444444 5889999999999 8899999999999999999877544


Q ss_pred             eEEEeecCCCCCeeEEEEcc--CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQR--AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafsp--dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .....  .|...|.+++|+|  +++            ++++++.|+.|++||++...
T Consensus       177 ~~~~~--~~~~~v~~~~~~~~~~~~------------~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          177 FTLTT--GQERGVNYVDYYPLPDKP------------YMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             EEEEC--CCTTCCCEEEECCSTTCC------------EEEEECTTSEEEEEETTTTE
T ss_pred             eEEec--CCCCCEEEEEEEECCCCC------------EEEEEeCCCEEEEEECCCCc
Confidence            33332  4558899999998  544            45555679999999986543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=9.7e-23  Score=205.13  Aligned_cols=194  Identities=16%  Similarity=0.240  Sum_probs=161.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +++++++|++++.|+.+++||+............|...+.+++|++++. .++++++.|+.|++||+...+ .+..+.+|
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~h  214 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGH  214 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECCC
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecCC
Confidence            5788999999999999999998776655554455788899999998753 367899999999999998876 46778899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ...|++++|+|++++|++++.|+.|++||+++.+++..+.+...|.+++|+|++.++ +++.|+.|+|||+++.. .+..
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~  292 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDE  292 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTE-EEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCe-EEEe
Confidence            999999999999999999999999999999999999999888999999999987655 56679999999998753 2222


Q ss_pred             E-------eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          161 L-------RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       161 l-------~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +       ....|...|++++|+|++++|++            ++.|+.|++||+..
T Consensus       293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s------------gs~Dg~v~iW~~~t  337 (340)
T 4aow_A          293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFA------------GYTDNLVRVWQVTI  337 (340)
T ss_dssp             ECCC-------CCCCCEEEEEECTTSSEEEE------------EETTSCEEEEEEEC
T ss_pred             ccccceeeeccCCCCCEEEEEECCCCCEEEE------------EeCCCEEEEEeCCC
Confidence            2       12368899999999997666554            46699999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=1.8e-22  Score=201.32  Aligned_cols=196  Identities=13%  Similarity=0.195  Sum_probs=161.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeC----------------------------------------CCCCcE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD----------------------------------------PNEQVL   40 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~----------------------------------------~h~~~V   40 (568)
                      +|+|++++|++|+.||.|+|||+++++.+..+.+                                        .|...+
T Consensus        74 ~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (318)
T 4ggc_A           74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  153 (318)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce
Confidence            4899999999999999999999998876655433                                        244556


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEeccCCCCeEEEEEcCCCC-EE--EEEeCCCeEEEEECCCCc
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQHSAPTAGISFSSDDK-II--ASVGLDKKLYTYDPGSRR  114 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~v~~l~~H~~~VtslafsPdg~-~L--aSgs~DGtV~IWDlrt~~  114 (568)
                      ..+.|.++++ +|++++.|+.|++||+.+++.   .......|...|.++.+++++. .+  ++++.++.|++||.+...
T Consensus       154 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~  232 (318)
T 4ggc_A          154 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  232 (318)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred             EEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence            7788888887 899999999999999976542   2455677888999999999544 33  356688999999999999


Q ss_pred             eeeEeecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356          115 PSSCITYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (568)
Q Consensus       115 ~v~~~~h~~~ItsLafsPdg~~LasGs--~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~  192 (568)
                      ......+...+..+.|.+++..+++++  .|+.|+|||+++.+ ++..+.  +|.+.|++++|+|++++|+++       
T Consensus       233 ~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~~~~l~--gH~~~V~~l~~spdg~~l~S~-------  302 (318)
T 4ggc_A          233 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELK--GHTSRVLSLTMSPDGATVASA-------  302 (318)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-EEEEEC--CCSSCEEEEEECTTSSCEEEE-------
T ss_pred             ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc-EEEEEc--CCCCCEEEEEEcCCCCEEEEE-------
Confidence            888888999999999999999888765  79999999999874 555565  899999999999987665554       


Q ss_pred             EEEEecCCCcEEcCCCCCCC
Q 008356          193 ALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWDlr~~~  212 (568)
                           +.|++|++||+....
T Consensus       303 -----s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          303 -----AADETLRLWRCFELD  317 (318)
T ss_dssp             -----ETTTEEEEECCSCCC
T ss_pred             -----ecCCeEEEEECCCCC
Confidence                 669999999997643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=9.9e-23  Score=216.19  Aligned_cols=190  Identities=13%  Similarity=0.200  Sum_probs=159.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.+++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++++  +|++|+.||+|++||+.+++ .+..+.+|.
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~-~~~~~~~h~  203 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC-CTHVFEGHN  203 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTE-EEEEECCCS
T ss_pred             EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCc-EEEEECCCC
Confidence            345788999999999999999999999999986 77889999999876  79999999999999998876 467788999


Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceee-----------------------Ee-ecCCCeEEEEEecCCC
Q 008356           82 APTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSS-----------------------CI-TYEAPFSSLAFIDDDW  135 (568)
Q Consensus        82 ~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~~v~-----------------------~~-~h~~~ItsLafsPdg~  135 (568)
                      ..|.+++|++  ++++|++++.|+.|++||++++....                       .+ .|...+.++  +++++
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~  281 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN  281 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred             CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence            9999999994  77999999999999999998865331                       22 466667666  56789


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       136 ~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +|++|+.||.|++||+++.. ++..+.  +|...|.+++|+|++++++            +++.|+.|++||++...
T Consensus       282 ~l~~~~~d~~i~vwd~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~l~------------sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVAQMK-CLYILS--GHTDRIYSTIYDHERKRCI------------SASMDTTIRIWDLENGE  343 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTE-EEEEEC--CCSSCEEEEEEETTTTEEE------------EEETTSCEEEEETTTTE
T ss_pred             EEEEEeCCCeEEEEECCCCc-EEEEec--CCCCCEEEEEEcCCCCEEE------------EEeCCCcEEEEECCCCc
Confidence            99999999999999999763 344444  7999999999999766554            44669999999987644

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=3.6e-23  Score=209.28  Aligned_cols=199  Identities=14%  Similarity=0.205  Sum_probs=164.6

Q ss_pred             CccCC---CCEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEE------ccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            1 MYNCK---DEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY------SRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpd---G~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Laf------spdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +|+|+   +++|++|+.||.|++||+.+++ .+..+.+ |...|.+++|      +++++ +|++++.||.|++||+...
T Consensus        72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC-CSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSC
T ss_pred             EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe-cccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCC
Confidence            37787   7999999999999999999888 7777876 7788999965      57777 8999999999999999887


Q ss_pred             CceeEEeccCCC----CeEEEE----EcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec---CCCEEEE
Q 008356           71 SPKVSWLKQHSA----PTAGIS----FSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID---DDWILTA  139 (568)
Q Consensus        71 ~~~v~~l~~H~~----~Vtsla----fsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP---dg~~Las  139 (568)
                      ...+..+..|..    .|.+++    |++++++|++++.|+.|++||+++++......+...|.+++|+|   ++.+|++
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  229 (357)
T 3i2n_A          150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA  229 (357)
T ss_dssp             SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred             CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE
Confidence            644666665554    899998    67899999999999999999999999887788999999999999   9999999


Q ss_pred             EEcCCeEEEEECCCCCCceEE--EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          140 GTSNGRVVFYDIRGKPQPLTV--LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v~~--l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++.||.|++||++........  ....+|...|++++|+|+++           .++++++.|+.|++||++...
T Consensus       230 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          230 TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR-----------ELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE-----------EEEEEEETTSEEEEEEEECCS
T ss_pred             ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC-----------cEEEEEeCCCcEEEeecCCCc
Confidence            999999999999875332221  12237999999999999644           245666779999999987654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=7e-23  Score=211.89  Aligned_cols=205  Identities=15%  Similarity=0.177  Sum_probs=168.5

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+| ++++|++++.||.|++||+.. +.+..+..++  ...|.+++|+|+++ +|++|+.|+.|++||++..  .+..+
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~~  200 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGH--EIFKE  200 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSC--EEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCC--EEEEe
Confidence            3788 679999999999999999975 5566665533  47799999999998 8999999999999999543  47778


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEEC
Q 008356           78 KQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGS----RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt----~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDl  151 (568)
                      ..|...|.+++|+|+++ +|++++.|+.|++||+++    +.++..+.|...|.+++|+| ++++|++++.|+.|++||+
T Consensus       201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~  280 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS  280 (383)
T ss_dssp             ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred             ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence            89999999999999988 999999999999999998    66777778999999999999 9999999999999999999


Q ss_pred             CCCCCceEEEe----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          152 RGKPQPLTVLR----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       152 rt~~~~v~~l~----~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ++.........    ...|...+. +.|+|++..++.+.. .++.+  +++.|+.|++||++....
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s-~dg~~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          281 YDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRY-PDDQL--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             TBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECB-CCTTT--CTTCCCCEEEEETTTCCE
T ss_pred             CCCccccccccccccccccccceE-EeccCCCCceEEEec-CCccc--ccCCCCeEEEEecCCCce
Confidence            98755433331    113455666 589998888776633 33333  777899999999976554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=1.1e-23  Score=213.42  Aligned_cols=194  Identities=18%  Similarity=0.242  Sum_probs=159.1

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEee--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce----
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK----   73 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~----   73 (568)
                      +|+| ++++|++++.||.|++||+.+++.+..+.  ..|...|.+++|+|+++ +|++++.||.|++||++..+..    
T Consensus       122 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  200 (366)
T 3k26_A          122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIK  200 (366)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHH
T ss_pred             EECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccc
Confidence            4788 89999999999999999999999888873  24778899999999997 8999999999999999765421    


Q ss_pred             -----------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--------------e
Q 008356           74 -----------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP--------------S  116 (568)
Q Consensus        74 -----------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~--------------v  116 (568)
                                             ......|...|.+++|+  +++|++++.|+.|++||+++++.              +
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence                                   12333499999999999  78999999999999999987643              3


Q ss_pred             eEe-ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCCc---eEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          117 SCI-TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQP---LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       117 ~~~-~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~~~~---v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      ..+ .|...|.+++|+|+  +++|++|+.||.|++||++.....   ...+..+.|...|++++|+|++++|++      
T Consensus       279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s------  352 (366)
T 3k26_A          279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA------  352 (366)
T ss_dssp             EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE------
T ss_pred             ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE------
Confidence            333 57888999999999  999999999999999999986432   224443334799999999997665544      


Q ss_pred             CeEEEEecCCCcEEcCCCC
Q 008356          191 ETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDlr  209 (568)
                            ++.|+.|++||+.
T Consensus       353 ------~~~dg~i~iwd~~  365 (366)
T 3k26_A          353 ------VCDDASIWRWDRL  365 (366)
T ss_dssp             ------EETTSEEEEEEC-
T ss_pred             ------EeCCCEEEEEEec
Confidence                  4669999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=3.6e-23  Score=219.85  Aligned_cols=197  Identities=20%  Similarity=0.324  Sum_probs=166.4

Q ss_pred             CccCC-CCEEEEEECCCcEEEEECCC----------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 008356            1 MYNCK-DEHLASISLSGDLILHNLAS----------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpd-G~~LasGs~DG~V~VWDl~t----------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t   69 (568)
                      +|+|+ +++|++++.||.|+|||+.+          .+.+..+.+ |...|.+++|++++..+|++|+.||.|++||+..
T Consensus       135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  213 (430)
T 2xyi_A          135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA  213 (430)
T ss_dssp             EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred             EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence            37786 67899999999999999976          566777776 6677899999999877899999999999999977


Q ss_pred             CCce------eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---ceeeEe-ecCCCeEEEEEecCCC-EE
Q 008356           70 RSPK------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCI-TYEAPFSSLAFIDDDW-IL  137 (568)
Q Consensus        70 ~~~~------v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~---~~v~~~-~h~~~ItsLafsPdg~-~L  137 (568)
                      ....      ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+ .|...|++++|+|++. +|
T Consensus       214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l  293 (430)
T 2xyi_A          214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL  293 (430)
T ss_dssp             CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEE
Confidence            3211      345678999999999999 7889999999999999999987   455555 6889999999999886 78


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      ++|+.||.|++||++....++..+.  .|...|.+++|+|+++           .+|++++.|+.|++||++..
T Consensus       294 ~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~-----------~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          294 ATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNE-----------TILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCT-----------TEEEEEETTSCCEEEEGGGT
T ss_pred             EEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCC-----------CEEEEEeCCCcEEEEeCCCC
Confidence            8999999999999998666677776  7899999999999754           34555677999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.8e-23  Score=214.64  Aligned_cols=191  Identities=9%  Similarity=0.018  Sum_probs=155.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---------CCCc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---------GRSP   72 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---------t~~~   72 (568)
                      +.+++++|++|+.||.|++||+.+++.+..+.   ...|.++.|+|+    +++++.|++|++|+..         ....
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            34578899999999999999999999887776   245666778876    8999999999999765         3332


Q ss_pred             eeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           73 KVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      .......|...|.+++|+|  ++++|++++.|++|++||+++++.+...  .+...|.+++|+|++.+|++|+.||.|+|
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            2233346778999999999  9999999999999999999999887655  35667999999999999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ||+++.......+.. .|...|++++|+|++.+|+++            + |+.|++||++....
T Consensus       197 wd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~------------~-~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          197 YNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVE------------C-DQTVVCFDLRKDVG  247 (343)
T ss_dssp             EESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEE------------E-SSBEEEEETTSSTT
T ss_pred             EECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEE------------e-CCeEEEEEcCCCCc
Confidence            999988654345541 389999999999976665544            4 55999999987654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-22  Score=209.18  Aligned_cols=192  Identities=13%  Similarity=0.262  Sum_probs=163.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|++|| .+++.+..+.. |...|.+++|+|+++ +|++++.|+.|++||+.+.. .+..+..+
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~~~  190 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGT-VMQHFELK  190 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTE-EEEEECCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCc-EEEEeecc
Confidence            4899999999999999999999 67888888875 778899999999998 89999999999999998776 35566667


Q ss_pred             CCC---------------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCC
Q 008356           81 SAP---------------TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG  144 (568)
Q Consensus        81 ~~~---------------VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG  144 (568)
                      ...               +.+++|+++ ..+++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++++.|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             ---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            666               999999987 45889999999999999998887777 6889999999999999999999999


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .|++||++... ....+.  .|...|.+++|+|++             ++++++.|+.|++||++....
T Consensus       270 ~i~i~d~~~~~-~~~~~~--~~~~~i~~~~~~~~~-------------~l~~~~~d~~i~i~d~~~~~~  322 (425)
T 1r5m_A          270 TLRIWHGGNGN-SQNCFY--GHSQSIVSASWVGDD-------------KVISCSMDGSVRLWSLKQNTL  322 (425)
T ss_dssp             CEEEECSSSBS-CSEEEC--CCSSCEEEEEEETTT-------------EEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEEECCCCc-cceEec--CCCccEEEEEECCCC-------------EEEEEeCCCcEEEEECCCCcE
Confidence            99999999864 344454  688999999999964             455556799999999976543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=7.4e-22  Score=208.57  Aligned_cols=197  Identities=14%  Similarity=0.199  Sum_probs=159.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |+++ ++|++|. |++|+|||+.+++.+..+.. .|...|++|+|+|+++ +|++|+.||.|+|||+.+++ .+..+.+|
T Consensus       113 wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~-~~~~~~~h  188 (420)
T 4gga_A          113 WSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQK-RLRNMTSH  188 (420)
T ss_dssp             ECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEECCC
T ss_pred             ECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCc-EEEEEeCC
Confidence            6654 5777765 89999999999998887764 3567899999999998 89999999999999998887 47788999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~-v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ...|.++.|+  +.+|++++.|+.+++||.+.... +..+ .|...+..+.|.|+++++++++.|+.|++||........
T Consensus       189 ~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~  266 (420)
T 4gga_A          189 SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW  266 (420)
T ss_dssp             SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS
T ss_pred             CCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccc
Confidence            9999998886  68999999999999999987543 3344 689999999999999999999999999999998754321


Q ss_pred             E-EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          159 T-VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       159 ~-~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      . ......|...|.+++|+|.+..++.         ..+++.|+.|++||++....
T Consensus       267 ~~~~~~~~~~~~V~~~~~~p~~~~~la---------~~~gs~D~~I~iwd~~t~~~  313 (420)
T 4gga_A          267 VPLQTFTQHQGAVKAVAWCPWQSNVLA---------TGGGTSDRHIRIWNVCSGAC  313 (420)
T ss_dssp             CCSEEECCCSSCEEEEEECTTCTTEEE---------EEECTTTCEEEEEETTTTEE
T ss_pred             eeeeeecccCCceeeeeeCCCcccEEE---------EEeecCCCEEEEEeCCcccc
Confidence            1 1222378999999999997544322         12346799999999876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.90  E-value=4.8e-23  Score=212.66  Aligned_cols=198  Identities=16%  Similarity=0.179  Sum_probs=163.8

Q ss_pred             ccCC----C---CEEEEEECCCcEEEEECCCCce-----eEEeeCCC----CCcEEEEEEc----cCCCeE-EEEEeCCC
Q 008356            2 YNCK----D---EHLASISLSGDLILHNLASGAK-----AAELKDPN----EQVLRVLDYS----RNSRHL-LVTAGDDG   60 (568)
Q Consensus         2 fSpd----G---~~LasGs~DG~V~VWDl~tg~~-----v~~l~~~h----~~~Vs~Lafs----pdg~~l-LaTgs~DG   60 (568)
                      |+|+    +   ++|++++.||.|++||+.+++.     +..+..+.    ...|.+++|+    ++++ + |++++.||
T Consensus        70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg  148 (397)
T 1sq9_A           70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKG  148 (397)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTS
T ss_pred             EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCC
Confidence            6677    8   9999999999999999988876     77777643    5789999999    9988 6 99999999


Q ss_pred             eEEEEECCC------CCceeE-----Ee-------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee--
Q 008356           61 TLHLWDTTG------RSPKVS-----WL-------KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--  120 (568)
Q Consensus        61 tV~VWDl~t------~~~~v~-----~l-------~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--  120 (568)
                      .|++||+..      ... +.     .+       ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.  
T Consensus       149 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~  226 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ  226 (397)
T ss_dssp             CEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             cEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence            999999987      442 22     44       5589999999999999 99999999999999999998888774  


Q ss_pred             --c---CCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCCceEEEeecC-------------CCCCeeEEEEccCC
Q 008356          121 --Y---EAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQPLTVLRACS-------------SSEAVSSLCWQRAK  179 (568)
Q Consensus       121 --h---~~~ItsLafsPdg~~LasGs~D---G~V~VWDlrt~~~~v~~l~~~~-------------h~~~VtsLafspdg  179 (568)
                        |   ...|.+++|+|++++|++++.|   +.|++||+++.. ++..+.  .             |...|.+++|+|++
T Consensus       227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLS--VPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEEC--BC--------CCBSBSSCEEEEEECSSS
T ss_pred             ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceec--cCcccccccccccccCCcEEEEEECCCC
Confidence              5   8999999999999999999999   999999999873 444444  4             88999999999976


Q ss_pred             CeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       180 ~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++|++            ++.|+.|++||++.......+
T Consensus       304 ~~l~~------------~~~dg~i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          304 ETLCS------------AGWDGKLRFWDVKTKERITTL  329 (397)
T ss_dssp             SEEEE------------EETTSEEEEEETTTTEEEEEE
T ss_pred             CEEEE------------EeCCCeEEEEEcCCCceeEEE
Confidence            65544            466999999999876544433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=3.4e-22  Score=205.52  Aligned_cols=198  Identities=16%  Similarity=0.136  Sum_probs=160.7

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+| ++++|++++.||.|++||+.+++.+..+.  +...+.++.|.+.+.  .++++++.|+.|++||+..... +..+
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~  182 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHIL  182 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEE
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeee
Confidence            3778 77899999999999999999999888877  566788899998543  2899999999999999987764 6678


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-eeeE----------------eecCCCeEEEEEecCCCEEEE
Q 008356           78 KQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRR-PSSC----------------ITYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~-~v~~----------------~~h~~~ItsLafsPdg~~Las  139 (568)
                      ..|...|.+++|+|++. +|++++.|+.|++||++++. .+..                ..|...|.+++|+|++++|++
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            89999999999999888 58999999999999998765 2222                247788999999999999999


Q ss_pred             EEcCCeEEEEECCCCCCce--------------------------------------------EEEeecCCCCCeeEEEE
Q 008356          140 GTSNGRVVFYDIRGKPQPL--------------------------------------------TVLRACSSSEAVSSLCW  175 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v--------------------------------------------~~l~~~~h~~~VtsLaf  175 (568)
                      ++.||.|++||+++.....                                            ......+|...|++++|
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            9999999999998643210                                            11112368899999999


Q ss_pred             ccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          176 QRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       176 spdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +|++++|++            ++.|+.|++||+.....
T Consensus       343 s~~~~~l~s------------~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          343 QSNFQELYS------------GSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             ETTTTEEEE------------EETTSCEEEEEECC---
T ss_pred             cCCCCEEEE------------ECCCCeEEEEeCCCCCc
Confidence            997665544            46699999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.2e-22  Score=196.04  Aligned_cols=187  Identities=14%  Similarity=0.145  Sum_probs=156.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEecc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~   79 (568)
                      | +++++|++++.||.|++||+.+++....+.. |...|.+++|+|+++ +|++++.||.|++|++....  .....+..
T Consensus        26 ~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  102 (313)
T 3odt_A           26 A-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIG  102 (313)
T ss_dssp             E-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTT-EEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred             e-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCC-EEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence            5 7899999999999999999988888887776 678899999999998 89999999999999996543  23667789


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      |...|.++.|  ++++|++++.|+.|++||  .++.+..+ .|...+.+++|.+ ++++|++++.||.|++||...   .
T Consensus       103 ~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~  175 (313)
T 3odt_A          103 HQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---V  175 (313)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---E
T ss_pred             cccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---e
Confidence            9999999999  578999999999999999  45555555 6889999999998 899999999999999999432   2


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ...+. ..|...|.+++|+|++.             +++++.|+.|++||++...
T Consensus       176 ~~~~~-~~~~~~i~~~~~~~~~~-------------~~~~~~dg~i~i~d~~~~~  216 (313)
T 3odt_A          176 IKTFS-GIHNDVVRHLAVVDDGH-------------FISCSNDGLIKLVDMHTGD  216 (313)
T ss_dssp             EEEEC-SSCSSCEEEEEEEETTE-------------EEEEETTSEEEEEETTTCC
T ss_pred             EEEEe-ccCcccEEEEEEcCCCe-------------EEEccCCCeEEEEECCchh
Confidence            33333 13889999999999643             4555679999999997644

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=2.6e-22  Score=213.22  Aligned_cols=198  Identities=16%  Similarity=0.235  Sum_probs=161.0

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCce-------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-
Q 008356            1 MYNCKDE-HLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-   71 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl~tg~~-------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-   71 (568)
                      +|+|++. +|++|+.||.|+|||+..+..       ...+.. |...|.+++|+|++..+|++++.||.|++||++... 
T Consensus       188 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             EECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             EeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            4789888 999999999999999987432       344444 778899999999666699999999999999998762 


Q ss_pred             -ceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeE
Q 008356           72 -PKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRV  146 (568)
Q Consensus        72 -~~v~~l~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt-~~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V  146 (568)
                       ..+..+..|...|++++|+|++. +|++++.||.|++||+++ .+++..+ .|...|.+++|+|++ .+|++++.|+.|
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence             34566779999999999999776 789999999999999998 4556666 589999999999998 479999999999


Q ss_pred             EEEECCCCCC-----------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          147 VFYDIRGKPQ-----------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       147 ~VWDlrt~~~-----------~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +|||++....           +.......+|...|++++|+|++++           ++++++.|+.|++|++..
T Consensus       347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-----------~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-----------IICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT-----------EEEEEETTSEEEEEEECH
T ss_pred             EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC-----------EEEEEECCCCEEEeEccc
Confidence            9999987321           1223333478899999999997652           455556799999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=7.6e-23  Score=214.58  Aligned_cols=195  Identities=11%  Similarity=0.167  Sum_probs=154.7

Q ss_pred             CccCCC--CEEEEEECCCcEEEEECCCCcee---------------------------------------EEeeCCCCCc
Q 008356            1 MYNCKD--EHLASISLSGDLILHNLASGAKA---------------------------------------AELKDPNEQV   39 (568)
Q Consensus         1 afSpdG--~~LasGs~DG~V~VWDl~tg~~v---------------------------------------~~l~~~h~~~   39 (568)
                      +|+|++  .+|++++.||.|++||+.+++..                                       ..+...|...
T Consensus       100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            478888  79999999999999998764431                                       1333457888


Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-------EeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 008356           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-------WLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPG  111 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~-------~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlr  111 (568)
                      |.+++|+|+++ +|++| .|+.|++||+........       .+..|...|++++|+|++ ++|++++.|+.|++||++
T Consensus       180 v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            99999999988 78888 899999999984332233       256899999999999998 999999999999999999


Q ss_pred             CCce----eeEe-ecCC------------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-----
Q 008356          112 SRRP----SSCI-TYEA------------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-----  169 (568)
Q Consensus       112 t~~~----v~~~-~h~~------------~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~-----  169 (568)
                      +++.    +..+ .+..            .|.+++|+|++++|++++. +.|+|||++...+++..+.  .|...     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~l~  334 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--VHEYLRSKLC  334 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--SCGGGTTTHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--cccccccccc
Confidence            9876    5555 3443            8999999999999999999 9999999997445566665  45432     


Q ss_pred             ----------eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          170 ----------VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       170 ----------VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                                +..++|+|++++|++            ++.|+.|++||+....
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s------------~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMT------------GSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEE------------ECSTTEEEEEETTTCC
T ss_pred             ccccccccccceEEEECCCCCEEEE------------eccCCEEEEEEcCCCc
Confidence                      334899997665544            4669999999998754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.3e-22  Score=206.43  Aligned_cols=191  Identities=14%  Similarity=0.120  Sum_probs=148.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECC---------CCceeEEeeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLA---------SGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~---------tg~~v~~l~~~h~~~Vs~Lafsp--dg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      |+|+   +++++.|+.|++|+..         +++.+..+...|.+.|.+++|+|  +++ +|++++.||.|++||+.++
T Consensus        84 ~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~  159 (343)
T 3lrv_A           84 EHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDD  159 (343)
T ss_dssp             CCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSS
T ss_pred             eCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCC
Confidence            5666   8999999999999654         55556666655778899999999  887 8999999999999999988


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eEe-e-cCCCeEEEEEecCCCEEEEEEcCCeEE
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-T-YEAPFSSLAFIDDDWILTAGTSNGRVV  147 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v-~~~-~-h~~~ItsLafsPdg~~LasGs~DG~V~  147 (568)
                      +........|...|++++|+|++.+|++|+.|+.|++||+++++.+ ..+ . |...|.+++|+|++.+|++++ |+.|+
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~  238 (343)
T 3lrv_A          160 SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVV  238 (343)
T ss_dssp             CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEE
T ss_pred             cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEE
Confidence            7532222456668999999999999999999999999999999877 555 4 899999999999999999999 55999


Q ss_pred             EEECCCCCCceEEEee-cCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEecC-CCcEEcCCCCC
Q 008356          148 FYDIRGKPQPLTVLRA-CSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAV-GDSILMPDPLP  210 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~-~~h~~~V--tsLafspdg~~Las~s~ssd~~~Lls~s~-Dg~V~VWDlr~  210 (568)
                      +||++...... .+.. ..|...+  .+++|+|++++|+++            +. |+.|++|++..
T Consensus       239 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~------------s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          239 CFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAY------------SNESNSLTIYKFDK  292 (343)
T ss_dssp             EEETTSSTTCB-SSCCCBC-----CCEEEEECTTSSEEEEE------------ETTTTEEEEEEECT
T ss_pred             EEEcCCCCcce-eecccccccccccceEEEECCCCCEEEEe------------cCCCCcEEEEEEcc
Confidence            99999875322 1211 1233334  369999987766554            34 88899998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=3.8e-23  Score=219.69  Aligned_cols=209  Identities=14%  Similarity=0.174  Sum_probs=164.0

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+| ++++|++|+.||+|+|||++++.. ..+..++  ...+.+++|++++. +|++|+.||.|++||+++..  +..+
T Consensus       171 ~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~--~~~~  246 (435)
T 4e54_B          171 KFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE--LWNL  246 (435)
T ss_dssp             EECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB--CCCS
T ss_pred             EEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce--eEEE
Confidence            4787 689999999999999999976543 3343323  34567899999998 89999999999999997654  5678


Q ss_pred             ccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeE----eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           78 KQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSC----ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~----~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      .+|...|++++|+|++. +|++++.|+.|++||+++.+....    ..|...|.+++|+|++++|++++.||.|+|||++
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            89999999999999765 788999999999999998654433    3688999999999999999999999999999999


Q ss_pred             CCCCceEEEeec-CC--CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          153 GKPQPLTVLRAC-SS--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       153 t~~~~v~~l~~~-~h--~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ....+....... .+  ...+..+.|++++.+++++...++..+++.+..++.|++||+.....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            875443332210 11  12344578999999988885555556666666678999999876543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.7e-23  Score=214.57  Aligned_cols=192  Identities=10%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-c
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-Q   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~   79 (568)
                      +++++++|++|+.||.|++||+.+++.+..+..+ |...|.+++|+|+++ +|++|+.||.|++||++.... +..+. .
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~  255 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL-IRSWSFG  255 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE-EEEEBCT
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE-EEEEecC
Confidence            4578999999999999999999999999999875 677899999999987 899999999999999998764 44443 7


Q ss_pred             CCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeeEee---------------------------cCCCeEEE
Q 008356           80 HSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGSRRPSSCIT---------------------------YEAPFSSL  128 (568)
Q Consensus        80 H~~~VtslafsP----dg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------------------------h~~~ItsL  128 (568)
                      |...|++++|+|    ++.+|++++.|+.|++||+++++++..+.                           |...|.++
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l  335 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI  335 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence            888999997765    57799999999999999999988776653                           44568899


Q ss_pred             EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-----------------------------------CCCCCeeEE
Q 008356          129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-----------------------------------SSSEAVSSL  173 (568)
Q Consensus       129 afsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~-----------------------------------~h~~~VtsL  173 (568)
                      +|+ ++++|++|+.|+.|++||+++... ...+..+                                   .|...|+++
T Consensus       336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i  413 (437)
T 3gre_A          336 SVS-NDKILLTDEATSSIVMFSLNELSS-SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI  413 (437)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTCGGG-CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred             EEC-CceEEEecCCCCeEEEEECCCccc-ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence            999 779999999999999999998743 3333311                                   278889999


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       174 afspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      +|.++          .+..+|++++.||.|++|+
T Consensus       414 ~~~~~----------~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          414 STCEV----------DETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEES----------SSSEEEEEEETTSCEEEEC
T ss_pred             eeecc----------CCceEEEEEcCCceEEEeC
Confidence            98874          2356788888899999995

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.2e-22  Score=213.84  Aligned_cols=202  Identities=13%  Similarity=0.168  Sum_probs=162.1

Q ss_pred             CccC-CCCEEEEEECCCcEEEEECCC---Cc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CC
Q 008356            1 MYNC-KDEHLASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GR   70 (568)
Q Consensus         1 afSp-dG~~LasGs~DG~V~VWDl~t---g~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---t~   70 (568)
                      +|+| ++++|++|+.||.|+|||+.+   +.   ....+.  |...|.+++|+++++ +|++|+.||.|++||+.   .+
T Consensus        70 ~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~  146 (437)
T 3gre_A           70 AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQE  146 (437)
T ss_dssp             EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEET
T ss_pred             EECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc--CCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCC
Confidence            4789 999999999999999999876   43   233333  788999999999887 89999999999999994   33


Q ss_pred             CceeEEec----------c--CCCCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecC
Q 008356           71 SPKVSWLK----------Q--HSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDD  133 (568)
Q Consensus        71 ~~~v~~l~----------~--H~~~Vtsla--fsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPd  133 (568)
                      .. .....          .  +...+.++.  +++++.+|++++.|+.|++||+++++++..+.   |...|.+++|+|+
T Consensus       147 ~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~  225 (437)
T 3gre_A          147 SE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE  225 (437)
T ss_dssp             TE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT
T ss_pred             ce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC
Confidence            21 11111          2  566777777  55789999999999999999999999888774   7899999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       134 g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +++|++|+.||.|++||++.. +++..+. ..|...|.+++|+|.        ...++.++++++.|+.|++||++....
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~~~~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFN-VLIRSWS-FGDHAPITHVEVCQF--------YGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTT-EEEEEEB-CTTCEEEEEEEECTT--------TCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCeEEEEEcCCc-cEEEEEe-cCCCCceEEEEeccc--------cCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            999999999999999999986 3333332 257789999998874        234567788888899999999987654


Q ss_pred             ccc
Q 008356          214 TSS  216 (568)
Q Consensus       214 ~~s  216 (568)
                      ...
T Consensus       296 ~~~  298 (437)
T 3gre_A          296 QYA  298 (437)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.90  E-value=2.6e-22  Score=218.45  Aligned_cols=192  Identities=15%  Similarity=0.160  Sum_probs=161.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----ceeEEeeCCCCCc-EEEEEEcc--CCCeEEEEEeCCCeEEEEECCCC---
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQV-LRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGR---   70 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg----~~v~~l~~~h~~~-Vs~Lafsp--dg~~lLaTgs~DGtV~VWDl~t~---   70 (568)
                      +|+|++++|++++ ++.|+|||+.++    +.+..+.+ |... |.+++|+|  +++ +|++++.||.|++||+.++   
T Consensus        25 ~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~  101 (615)
T 1pgu_A           25 SYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKES  101 (615)
T ss_dssp             EEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGG
T ss_pred             EECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCccc
Confidence            4899999999998 889999999988    88888887 6667 99999999  987 8999999999999999643   


Q ss_pred             ----CceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC-EEEEE
Q 008356           71 ----SPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAG  140 (568)
Q Consensus        71 ----~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D----GtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~-~LasG  140 (568)
                          ......+..|...|.+++|+|++++|++++.+    +.|++||  .++.+..+ .|...|.+++|+|++. +|+++
T Consensus       102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  179 (615)
T 1pgu_A          102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTV  179 (615)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEE
Confidence                23466778899999999999999999999988    6899998  44555555 6889999999999997 89999


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccC-CCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          141 TSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       141 s~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspd-g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.|+.|++||++... ....+.  .|..   .|.+++|+|+ +++++            +++.|+.|++||++...
T Consensus       180 ~~d~~v~vwd~~~~~-~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~------------~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          180 GDDGSVVFYQGPPFK-FSASDR--THHKQGSFVRDVEFSPDSGEFVI------------TVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             ETTTEEEEEETTTBE-EEEEEC--SSSCTTCCEEEEEECSTTCCEEE------------EEETTCCEEEEETTTCC
T ss_pred             eCCCcEEEEeCCCcc-eeeeec--ccCCCCceEEEEEECCCCCCEEE------------EEeCCCeEEEEECCCCC
Confidence            999999999998763 344444  6888   9999999997 65554            44669999999987544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=3e-22  Score=226.80  Aligned_cols=196  Identities=15%  Similarity=0.236  Sum_probs=171.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++++.||.|+|||+.+++.+..+.+ |...|.+++|+|+++ +|++++.||.|++||+.++......+..|
T Consensus        62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  139 (814)
T 3mkq_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (814)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence            4899999999999999999999999999998886 778899999999998 79999999999999998875567788899


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEec--CCCEEEEEEcCCeEEEEECCCCC
Q 008356           81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsP--dg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ...|.+++|+| ++++|++++.|+.|++||+++++....+  .+...+.+++|+|  ++.+|++++.||.|++||++...
T Consensus       140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99999999999 8899999999999999999988776666  3448899999999  99999999999999999998873


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       ....+.  +|...|.+++|+|+++++++            ++.|+.|++||+.....
T Consensus       220 -~~~~~~--~~~~~v~~~~~~~~~~~l~~------------~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          220 -CVATLE--GHMSNVSFAVFHPTLPIIIS------------GSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             -EEEEEE--CCSSCEEEEEECSSSSEEEE------------EETTSCEEEEETTTCSE
T ss_pred             -EEEEEc--CCCCCEEEEEEcCCCCEEEE------------EeCCCeEEEEECCCCcE
Confidence             344444  78899999999997665544            45699999999987554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=1.9e-21  Score=205.99  Aligned_cols=186  Identities=14%  Similarity=0.263  Sum_probs=158.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.+++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|  +++ +|++|+.||.|++||+.+++ .+..+..|.
T Consensus       139 ~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~  213 (435)
T 1p22_A          139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGE-MLNTLIHHC  213 (435)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCC-EEEEECCCC
T ss_pred             EEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCc-EEEEEcCCC
Confidence            456899999999999999999999999998886 7778899988  555 89999999999999998887 477788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v---~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      ..|.+++|+  +.+|++++.|+.|++||+++++..   ..+ .|...|.+++|  ++++|++|+.||.|++||+++.. .
T Consensus       214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~-~  288 (435)
T 1p22_A          214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE-F  288 (435)
T ss_dssp             SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC-E
T ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc-E
Confidence            999999997  469999999999999999987755   233 68889999999  68899999999999999999874 4


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +..+.  +|...|.++.|+.              .++++++.|+.|++||++....
T Consensus       289 ~~~~~--~~~~~v~~~~~~~--------------~~l~~g~~dg~i~iwd~~~~~~  328 (435)
T 1p22_A          289 VRTLN--GHKRGIACLQYRD--------------RLVVSGSSDNTIRLWDIECGAC  328 (435)
T ss_dssp             EEEEE--CCSSCEEEEEEET--------------TEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEEc--CCCCcEEEEEeCC--------------CEEEEEeCCCeEEEEECCCCCE
Confidence            45555  7899999999843              2566667799999999976543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.89  E-value=2.6e-22  Score=202.57  Aligned_cols=192  Identities=11%  Similarity=0.069  Sum_probs=162.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCCceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl-~t~~~~v~~   76 (568)
                      +|+|++++|++++.||.|+|||+.+++   ....+.. |...|.+++|+++++.+|++|+.||.|++||+ ....  ...
T Consensus        18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~   94 (342)
T 1yfq_A           18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--FQA   94 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS--EEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc--eEe
Confidence            488999999999999999999998777   2334443 77889999999997526899999999999999 8776  567


Q ss_pred             ecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CceeeEeecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           77 LKQ--HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---------RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        77 l~~--H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---------~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      +..  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+.+...|.+++|++++  |++++.|+.
T Consensus        95 ~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~  171 (342)
T 1yfq_A           95 LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQ  171 (342)
T ss_dssp             CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTE
T ss_pred             ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCe
Confidence            788  999999999999 99999999999999999998         7777777799999999999887  999999999


Q ss_pred             EEEEECCC-CCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          146 VVFYDIRG-KPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       146 V~VWDlrt-~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      |++||++. ........ ...|...|.+++|+| ++++++++            +.|+.|++||++..
T Consensus       172 i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~------------~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          172 VQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACS------------SIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEE------------ETTSEEEEEECCTT
T ss_pred             EEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEE------------ecCCcEEEEEEcCC
Confidence            99999998 54333322 236888999999999 86655444            56999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.7e-22  Score=211.95  Aligned_cols=200  Identities=16%  Similarity=0.155  Sum_probs=161.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCC------------------------------------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDP------------------------------------------   35 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~------------------------------------------   35 (568)
                      +|+++|++|+++ .++.|++||+.+++   .+..+..+                                          
T Consensus        11 ~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (450)
T 2vdu_B           11 LTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAA   89 (450)
T ss_dssp             EECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------------
T ss_pred             EecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCc
Confidence            378999966655 57899999999998   65555431                                          


Q ss_pred             -----------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC--CCCceeEEec--cCCCCeEEEEEcCCCCEEEEEe
Q 008356           36 -----------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSWLK--QHSAPTAGISFSSDDKIIASVG  100 (568)
Q Consensus        36 -----------h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~--t~~~~v~~l~--~H~~~VtslafsPdg~~LaSgs  100 (568)
                                 +...|.+++|+|+++.++++++.||.|+|||+.  ++.. +..+.  .|...|++++|+|++++|++++
T Consensus        90 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  168 (450)
T 2vdu_B           90 KVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDTTVIIAD  168 (450)
T ss_dssp             ----------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence                       222699999999998556999999999999998  6553 44444  6778999999999999999999


Q ss_pred             CCCeEEEEECCCCceee----Ee-ecCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeE
Q 008356          101 LDKKLYTYDPGSRRPSS----CI-TYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSS  172 (568)
Q Consensus       101 ~DGtV~IWDlrt~~~v~----~~-~h~~~ItsLafsPd---g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~Vts  172 (568)
                      .|+.|++||+.+++...    .+ .|...|.+++|+|+   +++|++|+.|+.|++||+++.......+.  +|...|.+
T Consensus       169 ~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~  246 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF--GHKHFVSS  246 (450)
T ss_dssp             TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC--CCSSCEEE
T ss_pred             CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec--CCCCceEE
Confidence            99999999998876543    33 68899999999999   99999999999999999998754322233  79999999


Q ss_pred             EEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          173 LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       173 Lafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++|+ ++++|+++            +.|+.|++||++.......+
T Consensus       247 ~~~s-d~~~l~s~------------~~d~~v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          247 ICCG-KDYLLLSA------------GGDDKIFAWDWKTGKNLSTF  278 (450)
T ss_dssp             EEEC-STTEEEEE------------ESSSEEEEEETTTCCEEEEE
T ss_pred             EEEC-CCCEEEEE------------eCCCeEEEEECCCCcEeeee
Confidence            9999 87766555            56999999999876654433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=1.3e-21  Score=207.67  Aligned_cols=189  Identities=20%  Similarity=0.231  Sum_probs=161.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCCce------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRSPK------   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp--dg~~lLaTgs~DGtV~VWDl~t~~~~------   73 (568)
                      |++++ +|++|+.||.|++||+.+++.+..+.+ |...|.+++|++  ++ .+|++|+.||.|++||+......      
T Consensus       170 ~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          170 YAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             ECSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------
T ss_pred             EcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCccccccccc
Confidence            66776 999999999999999999999988886 778899999995  44 48999999999999999765422      


Q ss_pred             ----------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCE
Q 008356           74 ----------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI  136 (568)
Q Consensus        74 ----------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~  136 (568)
                                      ...+.+|...|.++  ++++++|++++.|+.|++||+++++++..+ .|...|.+++|+|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  324 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR  324 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE
Confidence                            45677899888887  567899999999999999999999988877 58899999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          137 LTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |++|+.||.|++||+++.. ++..+.  +|...|.+++|++              .++++++.|+.|++||++...
T Consensus       325 l~sg~~dg~i~vwd~~~~~-~~~~~~--~h~~~v~~~~~~~--------------~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          325 CISASMDTTIRIWDLENGE-LMYTLQ--GHTALVGLLRLSD--------------KFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             EEEEETTSCEEEEETTTTE-EEEEEC--CCSSCEEEEEECS--------------SEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEeCCCcEEEEECCCCc-EEEEEe--CCCCcEEEEEEcC--------------CEEEEEeCCCcEEEEECCCCc
Confidence            9999999999999999873 444454  7999999999974              256666779999999987643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=4.3e-21  Score=191.26  Aligned_cols=197  Identities=15%  Similarity=0.213  Sum_probs=158.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|++++ +||+| .|++|+|||+.+++.+..+.. .|...|.+++|+++++ +|++|+.||+|++||+.+++ .+..+.+
T Consensus        32 ~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~-~~~~~~~  107 (318)
T 4ggc_A           32 DWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQK-RLRNMTS  107 (318)
T ss_dssp             EECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEEEEEC
T ss_pred             EECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCce-eEEEecC
Confidence            377765 67766 599999999999998888764 3567899999999998 89999999999999999887 4677889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v-~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      |...+.++.+.  +..+++++.++.+++|+....... ..+ .|...+.++++.+++++|++++.|+.|++||+++.+..
T Consensus       108 h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          108 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             ccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            99988876654  689999999999999999876443 333 68999999999999999999999999999999875432


Q ss_pred             eE-EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          158 LT-VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       158 v~-~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .. ......|.+.|.++++.+++..++         .+.+++.++.|++||.+...
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~~~~~~~i~lwd~~~~~  232 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVL---------ATGGGTSDRHIRIWNVCSGA  232 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEE---------EEEECTTTCEEEEEETTTCC
T ss_pred             ccceeeecccCCceEEEEecCCCCcEE---------EEEecCCCCEEEEEeccccc
Confidence            11 122336888999999999754332         23455678999999986644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.8e-22  Score=227.28  Aligned_cols=201  Identities=11%  Similarity=0.173  Sum_probs=166.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC--CCceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~--tg~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~v~   75 (568)
                      +|+|++++|++|+.||.|+|||+.  +++.+..+.+ |...|.+++|+++  ++ +|++|+.||.|++||+.++. ....
T Consensus        16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~~~   93 (753)
T 3jro_A           16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIA   93 (753)
T ss_dssp             CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCC-EEEEEeCCCeEEEEECCCCcccccc
Confidence            589999999999999999999997  4456667776 7788999999987  66 89999999999999998764 2366


Q ss_pred             EeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCce---eeEeecCCCeEEEEEec-------------CCCEE
Q 008356           76 WLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFID-------------DDWIL  137 (568)
Q Consensus        76 ~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~---v~~~~h~~~ItsLafsP-------------dg~~L  137 (568)
                      .+..|...|++++|+|+  +++|++++.||.|++||++++..   .....|...|.+++|+|             ++.+|
T Consensus        94 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l  173 (753)
T 3jro_A           94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (753)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred             cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence            77889999999999998  99999999999999999998733   22336889999999999             58999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEE-eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVL-RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l-~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++|+.||.|++||++......... ...+|...|++++|+|++         ..+.++++++.|+.|++||++...
T Consensus       174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---------~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------LLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------SSSEEEEEEESSSCEEEEEESSSS
T ss_pred             EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC---------CCCCEEEEEecCCEEEEecCCCCC
Confidence            999999999999998865432222 234799999999999961         014456666779999999987643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.6e-22  Score=210.32  Aligned_cols=194  Identities=12%  Similarity=0.078  Sum_probs=161.1

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECC--CCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 008356            1 MYNCKDEHL-ASISLSGDLILHNLA--SGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K   73 (568)
Q Consensus         1 afSpdG~~L-asGs~DG~V~VWDl~--tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~   73 (568)
                      +|+|++++| ++++.||.|+|||+.  +++.+..+.. .+...|.+++|+|+++ +|++|+.||.|++|++.....   .
T Consensus       109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSSCC
T ss_pred             EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEecCCccccccc
Confidence            489999996 888899999999998  8888877763 2567899999999998 899999999999999976652   1


Q ss_pred             eEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           74 VSWLKQHSAPTAGISFSSD---DKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPd---g~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      ...+.+|...|++++|+|+   +++|++++.|+.|++||+++++.+..+  .|...|.+++|+ ++++|++++.|+.|+|
T Consensus       188 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~v  266 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFA  266 (450)
T ss_dssp             CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEE
T ss_pred             ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEE
Confidence            2356789999999999999   999999999999999999998877663  688999999999 9999999999999999


Q ss_pred             EECCCCCCceEEEeec-----------------------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356          149 YDIRGKPQPLTVLRAC-----------------------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~-----------------------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      ||+++.. .+..+...                       .+...|.+++|+|++++++++           +..|+.|++
T Consensus       267 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----------~~~d~~i~i  334 (450)
T 2vdu_B          267 WDWKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF-----------VEATKCIII  334 (450)
T ss_dssp             EETTTCC-EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE-----------ETTCSEEEE
T ss_pred             EECCCCc-EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE-----------ECCCCeEEE
Confidence            9999874 33444311                       223568899999976655444           225899999


Q ss_pred             CCC
Q 008356          206 PDP  208 (568)
Q Consensus       206 WDl  208 (568)
                      ||+
T Consensus       335 w~~  337 (450)
T 2vdu_B          335 LEM  337 (450)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.2e-22  Score=230.82  Aligned_cols=192  Identities=10%  Similarity=0.076  Sum_probs=157.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++||+|+.||.|+||+..+.+....+.  |...|.+++|++ ++ +|++++.|++|+|||+.+++. +..+. |
T Consensus        24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~-~~~~~-~   97 (902)
T 2oaj_A           24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKV-LTTVF-V   97 (902)
T ss_dssp             EEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSE-EEEEE-C
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcE-EEEEc-C
Confidence            589999999999999999999987776655443  677899999999 76 899999999999999988774 44443 7


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee-----------E-eecCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-----------C-ITYEAPFSSLAFIDD-DWILTAGTSNGRVV  147 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~-----------~-~~h~~~ItsLafsPd-g~~LasGs~DG~V~  147 (568)
                      ...|++++|+|++++|++|+.||.|++||+++++...           . ..|.+.|.+++|+|+ +.+|++|+.||.| 
T Consensus        98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-  176 (902)
T 2oaj_A           98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-  176 (902)
T ss_dssp             SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred             CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence            7889999999999999999999999999999887531           1 247789999999996 5789999999999 


Q ss_pred             EEECCCCCCceEEEeec----------------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          148 FYDIRGKPQPLTVLRAC----------------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~----------------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      +||++... +...+..+                .|...|++++|+|+|++|+++            +.|+.|++||++..
T Consensus       177 lWd~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg------------s~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          177 TYSLVENE-IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI------------HEDNSLVFWDANSG  243 (902)
T ss_dssp             EEETTTTE-EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE------------ETTCCEEEEETTTC
T ss_pred             EEECCCCc-eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE------------ECCCeEEEEECCCC
Confidence            99999873 34444311                235789999999976655544            66999999999765


Q ss_pred             C
Q 008356          212 V  212 (568)
Q Consensus       212 ~  212 (568)
                      .
T Consensus       244 ~  244 (902)
T 2oaj_A          244 H  244 (902)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.88  E-value=9.9e-22  Score=198.31  Aligned_cols=192  Identities=10%  Similarity=0.051  Sum_probs=156.6

Q ss_pred             CccCCCC-EEEEEECCCcEEEEEC-CCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 008356            1 MYNCKDE-HLASISLSGDLILHNL-ASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------   69 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl-~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--------   69 (568)
                      +|+|+++ +|++|+.||.|++||+ .+++. ..+.. .|...|.+++|++ +. +|++++.|+.|++||+..        
T Consensus        63 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccc
Confidence            4789999 9999999999999999 77765 44543 1677899999999 66 899999999999999976        


Q ss_pred             -CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ccee---eEeecCCCeEEEEEec-CCCEEEEEEcC
Q 008356           70 -RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPS---SCITYEAPFSSLAFID-DDWILTAGTSN  143 (568)
Q Consensus        70 -~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~~~v---~~~~h~~~ItsLafsP-dg~~LasGs~D  143 (568)
                       .+. +..+. |...|.+++|++++  +++++.|+.|++||+++ +...   ....+...|.+++|+| ++++|++++.|
T Consensus       140 ~~~~-~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          140 KNLN-SNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             EESC-SSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             cCCe-eeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence             442 33333 88999999999877  99999999999999998 5432   2235788999999999 99999999999


Q ss_pred             CeEEEEECCCC-----CCceEEEeecCC---------CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          144 GRVVFYDIRGK-----PQPLTVLRACSS---------SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       144 G~V~VWDlrt~-----~~~v~~l~~~~h---------~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |.|++||++..     ......+.  .|         ...|.+++|+|++++|+++            +.|+.|++||++
T Consensus       216 g~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------~~dg~i~vwd~~  281 (342)
T 1yfq_A          216 GRVAVEFFDDQGDDYNSSKRFAFR--CHRLNLKDTNLAYPVNSIEFSPRHKFLYTA------------GSDGIISCWNLQ  281 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEE--CCCCCTTCCSSCCCEEEEEECTTTCCEEEE------------ETTSCEEEEETT
T ss_pred             CcEEEEEEcCCCcccccccceeee--cccccccccccceeEEEEEEcCCCCEEEEe------------cCCceEEEEcCc
Confidence            99999999876     35556666  44         3499999999977665554            569999999987


Q ss_pred             CCCc
Q 008356          210 PSVT  213 (568)
Q Consensus       210 ~~~~  213 (568)
                      ....
T Consensus       282 ~~~~  285 (342)
T 1yfq_A          282 TRKK  285 (342)
T ss_dssp             TTEE
T ss_pred             cHhH
Confidence            6543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.7e-21  Score=189.04  Aligned_cols=184  Identities=12%  Similarity=0.104  Sum_probs=155.1

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeEEecc-CCC
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSA   82 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~   82 (568)
                      ++++|++++.||.|++||  .++.+..+.. |...+.+++|.+ +++ ++++++.||.|++||..  . ....+.. |..
T Consensus       113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~--~-~~~~~~~~~~~  185 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSFSEN-KFLTASADKTIKLWQND--K-VIKTFSGIHND  185 (313)
T ss_dssp             ETTEEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEETTTT-EEEEEETTSCEEEEETT--E-EEEEECSSCSS
T ss_pred             cCCEEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccCCCC-EEEEEECCCCEEEEecC--c-eEEEEeccCcc
Confidence            578999999999999999  6677777776 677888899998 555 89999999999999933  2 3445555 999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      .|.+++|+|++. +++++.|+.|++||+++++.+..+ .|...|.+++|+|++ .|++++.||.|++||+++.. +...+
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~  262 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS-LKQVI  262 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC-EEEEE
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc-eeEEE
Confidence            999999999888 999999999999999999988877 589999999999999 58899999999999999874 44555


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .  .|...|.+++|+|+++             +++++.|+.|++||++....
T Consensus       263 ~--~~~~~i~~~~~~~~~~-------------~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          263 T--LPAISIWSVDCMSNGD-------------IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             E--CSSSCEEEEEECTTSC-------------EEEEETTSCEEEEESCGGGC
T ss_pred             e--ccCceEEEEEEccCCC-------------EEEEeCCCcEEEEeCCCCce
Confidence            5  6888999999999754             33345699999999876443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=6.3e-21  Score=202.10  Aligned_cols=186  Identities=16%  Similarity=0.190  Sum_probs=160.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.++|++|++|+.||.|++||+.+++.+..+.+ |...|.+++|+  ++ ++++|+.||.|++||+.+++ .+..+.+|.
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~h~  199 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGE-CIHTLYGHT  199 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTE-EEEEECCCS
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCc-EEEEECCCC
Confidence            456799999999999999999999999999986 77788999998  33 89999999999999998876 467788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|.++.|+  ++.|++++.|+.|++||+++++.+..+ .|...|.+++|  ++++|++|+.||.|++||+++.. ++..
T Consensus       200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~-~~~~  274 (445)
T 2ovr_B          200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET-CLHT  274 (445)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE-EEEE
T ss_pred             CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc-EeEE
Confidence            999999996  678999999999999999999888777 68899999999  68899999999999999998873 3444


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +.  +|...|.+++|  ++.            .+++++.|+.|++||++....
T Consensus       275 ~~--~~~~~v~~~~~--~~~------------~l~~~~~d~~i~i~d~~~~~~  311 (445)
T 2ovr_B          275 LQ--GHTNRVYSLQF--DGI------------HVVSGSLDTSIRVWDVETGNC  311 (445)
T ss_dssp             EC--CCSSCEEEEEE--CSS------------EEEEEETTSCEEEEETTTCCE
T ss_pred             ec--CCCCceEEEEE--CCC------------EEEEEeCCCeEEEEECCCCCE
Confidence            44  78999999998  333            455567799999999977543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.6e-22  Score=217.25  Aligned_cols=196  Identities=10%  Similarity=0.065  Sum_probs=142.4

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCcee----EEeeCCCCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCCCCce
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKA----AELKDPNEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTGRSPK   73 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v----~~l~~~h~~~Vs~Lafspdg-----~~lLaTgs~DGtV~VWDl~t~~~~   73 (568)
                      +|+++.|++++.|++|+|||+.+++..    ..+. +|.+.|..++|+|++     ..+|++++.||+|+|||+......
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~  248 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD  248 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence            345556666778999999999877643    2233 366789999999972     238999999999999999765321


Q ss_pred             ----------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEE--EEecCC-CEEE
Q 008356           74 ----------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSL--AFIDDD-WILT  138 (568)
Q Consensus        74 ----------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsL--afsPdg-~~La  138 (568)
                                ...+.+|...|++++|+++ ..|++|+.||+|++||++++. +...+ .|...|.++  +|++++ ++|+
T Consensus       249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence                      2467889999999999985 489999999999999999764 34434 689999999  567887 8999


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +|+.|++|+|||+++... ...+..+.....|.+++|+|+++.+++            ++.|+.|++||++....
T Consensus       328 S~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s------------~~~d~tv~lwd~~~~~~  389 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIY------------SDGASSLRAVPSRAAFA  389 (524)
T ss_dssp             EEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEE------------ECSSSEEEEEETTCTTC
T ss_pred             EeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEE------------eCCCCcEEEEECccccc
Confidence            999999999999997643 333332112235889999997655444            45689999999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.87  E-value=1.5e-21  Score=232.35  Aligned_cols=193  Identities=11%  Similarity=0.159  Sum_probs=168.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|+++++++|+.+|.|++||+.+++....+.+ |...|.+++|+|+++ +|++++.||.|++||+.++.  ...+..|
T Consensus       968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~-h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~--~~~~~~~ 1043 (1249)
T 3sfz_A          968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGD--YVFLQAH 1043 (1249)
T ss_dssp             EECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-CSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTE--EECCBCC
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-CCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc--eEEEecC
Confidence            4789999999999999999999999998888876 777889999999998 79999999999999998876  4456789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...|.++.|++++ .+++++.|+.|++||+.+++.+..+ .|...|.+++|+|++++|++++.||.|++||+.+.. +..
T Consensus      1044 ~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-~~~ 1121 (1249)
T 3sfz_A         1044 QETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLH 1121 (1249)
T ss_dssp             SSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-CSB
T ss_pred             CCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-eee
Confidence            9999999999855 5788999999999999999988777 588999999999999999999999999999998874 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .+.  +|...|++++|+|++++++++            +.|+.|++||+.....
T Consensus      1122 ~l~--~h~~~v~~~~~s~dg~~lat~------------~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1122 ELK--GHNGCVRCSAFSLDGILLATG------------DDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             CCC--CCSSCEEEEEECSSSSEEEEE------------ETTSCCCEEESSSSCC
T ss_pred             eec--cCCCcEEEEEECCCCCEEEEE------------eCCCEEEEEECCCCce
Confidence            444  799999999999977665554            5699999999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=1.7e-20  Score=198.69  Aligned_cols=182  Identities=19%  Similarity=0.311  Sum_probs=154.7

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--eEEeccCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--VSWLKQHS   81 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--v~~l~~H~   81 (568)
                      .++++|++|+.||.|++||+.+++.+..+.. |...|.+++|++  . ++++|+.||.|++||+......  ...+.+|.
T Consensus       181 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  256 (435)
T 1p22_A          181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  256 (435)
T ss_dssp             CCSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSCCEEEEEECCCS
T ss_pred             ECCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCC
Confidence            4789999999999999999999999998886 777899999974  3 7999999999999999876633  26778999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..|.+++|  ++++|++++.|+.|++||+++++.+..+ .|...|.+++|+  +++|++|+.||.|++||+++.. .+..
T Consensus       257 ~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~-~~~~  331 (435)
T 1p22_A          257 AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRV  331 (435)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred             CcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC-EEEE
Confidence            99999999  6899999999999999999999988877 588899999995  6899999999999999999873 4455


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.  +|...|.+++|  ++.+            +++++.|+.|++||++.
T Consensus       332 ~~--~h~~~v~~~~~--~~~~------------l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          332 LE--GHEELVRCIRF--DNKR------------IVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             EC--CCSSCEEEEEC--CSSE------------EEEEETTSCEEEEEHHH
T ss_pred             Ee--CCcCcEEEEEe--cCCE------------EEEEeCCCcEEEEECCC
Confidence            54  79999999998  3333            45556688888888743

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.8e-21  Score=220.88  Aligned_cols=197  Identities=13%  Similarity=0.180  Sum_probs=163.1

Q ss_pred             CccCC--CCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC-ce
Q 008356            1 MYNCK--DEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS-PK   73 (568)
Q Consensus         1 afSpd--G~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~-~~   73 (568)
                      +|+++  +++|++|+.||.|++||+.+++  .+..+.. |...|.+++|+|+  +. +|++|+.||.|++||+.... ..
T Consensus        60 ~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~  137 (753)
T 3jro_A           60 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS  137 (753)
T ss_dssp             EECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC
T ss_pred             EecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc
Confidence            36777  9999999999999999998886  5556654 7788999999999  76 89999999999999997763 23


Q ss_pred             eEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCc----eeeEe-ecCCCeEEEEEecC--
Q 008356           74 VSWLKQHSAPTAGISFSS-------------DDKIIASVGLDKKLYTYDPGSRR----PSSCI-TYEAPFSSLAFIDD--  133 (568)
Q Consensus        74 v~~l~~H~~~VtslafsP-------------dg~~LaSgs~DGtV~IWDlrt~~----~v~~~-~h~~~ItsLafsPd--  133 (568)
                      ...+..|...|.+++|+|             ++.+|++++.||.|++||++++.    ....+ .|...|.+++|+|+  
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            556778999999999999             58999999999999999998874    33333 58899999999999  


Q ss_pred             -CCEEEEEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          134 -DWILTAGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       134 -g~~LasGs~DG~V~VWDlrt~~~~v--~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                       +++|++++.||.|++||++......  .......|...|++++|+|++++++++            +.|+.|++||+..
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~------------s~Dg~I~vwd~~~  285 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS------------GGDNKVTLWKENL  285 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE------------CSSSCEECCBCCS
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE------------cCCCEEEEEecCC
Confidence             8999999999999999999863221  122223588999999999987665554            5699999999985


Q ss_pred             C
Q 008356          211 S  211 (568)
Q Consensus       211 ~  211 (568)
                      .
T Consensus       286 ~  286 (753)
T 3jro_A          286 E  286 (753)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=5e-21  Score=208.32  Aligned_cols=188  Identities=13%  Similarity=0.196  Sum_probs=155.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |+|++.+++++ .++.+.+|++.+++.+..+.  +...+.+++|+  ++ +|++++. |+.|++||+.........+..|
T Consensus       414 ~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~-~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~  487 (615)
T 1pgu_A          414 ANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS--QN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPL  487 (615)
T ss_dssp             ECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC--SS-EEEEEETTTSCEEEEETTEEEEEEECSSCC
T ss_pred             EcCCCCEEEEe-CCCceEEEeccCCceeeecc--cCCCceEEEEc--CC-EEEEeecCCCeEEEEECCCccccccccCCc
Confidence            45556555544 55666666666777777776  66788999999  55 8999999 9999999998765322667789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee--cCCCeEEEEEec----------CCCEEEEEEcCCeEEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFID----------DDWILTAGTSNGRVVF  148 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--h~~~ItsLafsP----------dg~~LasGs~DG~V~V  148 (568)
                      ...|++++|+|++++|++++.|+.|++||+.+++.+..+.  |...|.+++|+|          ++++|++++.||.|++
T Consensus       488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~i  567 (615)
T 1pgu_A          488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  567 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEE
Confidence            9999999999999999999999999999999999887773  899999999999          9999999999999999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ||++...+++..+.  +|...|++++|+|+++             |++++.|+.|++||+..
T Consensus       568 w~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-------------l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          568 YSVKRPMKIIKALN--AHKDGVNNLLWETPST-------------LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EESSCTTCCEEETT--SSTTCEEEEEEEETTE-------------EEEEETTSCEEEEEEC-
T ss_pred             EECCCCceechhhh--cCccceEEEEEcCCCC-------------eEEecCCceEEEEeeec
Confidence            99998755555554  7999999999999644             55556799999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=1.1e-21  Score=206.42  Aligned_cols=206  Identities=11%  Similarity=0.096  Sum_probs=147.0

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEE-----eeCCCCCcEEEEEEcc--------CCCeEEEEEeCCCeEEEEECC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAE-----LKDPNEQVLRVLDYSR--------NSRHLLVTAGDDGTLHLWDTT   68 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~-----l~~~h~~~Vs~Lafsp--------dg~~lLaTgs~DGtV~VWDl~   68 (568)
                      +.+++++|++++.|++|+|||+.+++....     +. +|.+.|++|+|+|        +++ +|++|+.|++|+|||+.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECC
Confidence            345667899999999999999988765432     33 4788999999997        554 89999999999999997


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeE--------------------------eec
Q 008356           69 GRSPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSC--------------------------ITY  121 (568)
Q Consensus        69 t~~~~v~~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~--------------------------~~h  121 (568)
                      ...+ +..+..|...|.+++|+|++ ++|++++.|++|++||+++++....                          ..|
T Consensus       175 ~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  253 (393)
T 4gq1_A          175 DEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI  253 (393)
T ss_dssp             TTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred             CCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence            7663 55677888999999999976 5899999999999999988754321                          135


Q ss_pred             CCCeEEEEEe-cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE--------EeccCCCCe
Q 008356          122 EAPFSSLAFI-DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI--------DETTCKAET  192 (568)
Q Consensus       122 ~~~ItsLafs-Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~La--------s~s~ssd~~  192 (568)
                      ...+.+++|. ++++.|++++.|+.+++||+..... ...+.  .|...+..+.+.++.+.+.        ......++.
T Consensus       254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEIS--DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY  330 (393)
T ss_dssp             SSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEe--eecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence            5678889987 7999999999999999999987643 22232  5666677777766543322        111234566


Q ss_pred             EEEEecCCCcEEcCCCCCCCc
Q 008356          193 ALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ++++++.|+.|++||+.....
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~  351 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDS  351 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTC
T ss_pred             EEEEECCCCEEEEEECCCCcE
Confidence            788888999999999876543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.87  E-value=9.2e-21  Score=198.19  Aligned_cols=174  Identities=10%  Similarity=0.102  Sum_probs=129.5

Q ss_pred             CCcEEEEEC-CCCceeEEeeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---CCeEEE
Q 008356           15 SGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS---APTAGI   87 (568)
Q Consensus        15 DG~V~VWDl-~tg~~v~~l~~~h~~~Vs~Lafsp---dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~---~~Vtsl   87 (568)
                      |+.|++|++ .+++.+..+.. |...++.++|++   +++ +|++++.|++|+|||+.+++. ++.+.+|.   ..+.++
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~v  232 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFL-MPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHK  232 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEE-CCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEE
T ss_pred             CCcEEEEEECCCCceeeeecc-CCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEE
Confidence            788888888 45777666665 555566777887   555 899999999999999998874 56666543   467888


Q ss_pred             EEcCCCCEE------------EEEeCCCeEEEEECCCCceeeEe------ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           88 SFSSDDKII------------ASVGLDKKLYTYDPGSRRPSSCI------TYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        88 afsPdg~~L------------aSgs~DGtV~IWDlrt~~~v~~~------~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                      +|+|++.++            ++|+.|++|++||..+++.+..+      +|...+.+..++  +.++++++.|++|+||
T Consensus       233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIW  310 (356)
T 2w18_A          233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEE
Confidence            999999886            56788999999999999887654      233444444444  7899999999999999


Q ss_pred             ECCCCCCceEEEeecCCCCCee-EEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVS-SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~Vt-sLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      |+++++ .+..+.  +|...+. .++|+|+|++|+++            +.|++|+|||+
T Consensus       311 Dl~tGk-~l~tL~--gH~~~vvs~vafSPDG~~LaSG------------S~D~TIklWd~  355 (356)
T 2w18_A          311 DLLLGQ-CTALLP--PVSDQHWSFVKWSGTDSHLLAG------------QKDGNIFVYHY  355 (356)
T ss_dssp             ETTTCS-EEEEEC--CC--CCCCEEEECSSSSEEEEE------------CTTSCEEEEEE
T ss_pred             ECCCCc-EEEEec--CCCCCeEEEEEECCCCCEEEEE------------ECCCcEEEecC
Confidence            999884 455555  6776655 68999977665554            66999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=1.9e-21  Score=204.70  Aligned_cols=177  Identities=12%  Similarity=0.116  Sum_probs=129.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee----------
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV----------   74 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v----------   74 (568)
                      |+++||+|+.|++|+|||+.++..+..+.. |...+.+++|+|++.++|++|+.|++|++||+.+++...          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence            789999999999999999988887777776 556678899999987789999999999999997654211          


Q ss_pred             --------------EEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCC--------------
Q 008356           75 --------------SWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP--------------  124 (568)
Q Consensus        75 --------------~~l~~H~~~Vtslafs-Pdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~--------------  124 (568)
                                    ....+|...|.++.|. ++++.|++++.|+++++||+..++....+ .+...              
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS  313 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred             ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence                          1134678889999997 59999999999999999999876544333 12222              


Q ss_pred             ----eEEEEEec--CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          125 ----FSSLAFID--DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       125 ----ItsLafsP--dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                          ...+.|++  ++.++++|+.||.|+|||+........ +.  .|..+|++++|+|+|++|+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~-~~--~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          314 LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI-PI--QLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE-EE--ECSSCEEEEEECTTSSEEEEE
T ss_pred             ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE-ec--CCCCcEEEEEEcCCCCEEEEE
Confidence                22233444  344667788899999999998754433 33  578899999999998887776

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=1e-20  Score=196.27  Aligned_cols=192  Identities=12%  Similarity=0.131  Sum_probs=146.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|||++|++|+.+| ++|||+.+++.......  . .+..+++.++++.++++++.|++|++||+.+++. +..+. |
T Consensus        26 ~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~-~~~~~-~   99 (355)
T 3vu4_A           26 EFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--R-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD-VSRIK-V   99 (355)
T ss_dssp             EECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--S-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE-EEEEE-C
T ss_pred             EECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--C-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE-EEEEE-C
Confidence            4899999999998775 78999987776655442  2 3666888888875557888899999999988763 33343 6


Q ss_pred             CCCeEEEEEcCCC-----------------------------------CEEEE--EeCCCeEEEEECCCCc---------
Q 008356           81 SAPTAGISFSSDD-----------------------------------KIIAS--VGLDKKLYTYDPGSRR---------  114 (568)
Q Consensus        81 ~~~VtslafsPdg-----------------------------------~~LaS--gs~DGtV~IWDlrt~~---------  114 (568)
                      ...|.+++|+++.                                   .+++.  ++.||.|++||+++++         
T Consensus       100 ~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~  179 (355)
T 3vu4_A          100 DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGV  179 (355)
T ss_dssp             SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-----------
T ss_pred             CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence            6688888887642                                   23444  4788899999998765         


Q ss_pred             ------e-eeEe-ecCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          115 ------P-SSCI-TYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       115 ------~-v~~~-~h~~~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                            + +..+ .|...|.+++|+|++++|++|+.|++ |+|||+++.. .+..+....|...|.+++|+|++++|+++
T Consensus       180 ~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          180 QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             -------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred             cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence                  1 3334 79999999999999999999999998 9999999874 33444311288999999999976665554


Q ss_pred             ccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          186 TTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       186 s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                                  +.|+.|++||++..
T Consensus       259 ------------s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          259 ------------SDKWTLHVFEIFND  272 (355)
T ss_dssp             ------------ETTCEEEEEESSCC
T ss_pred             ------------ECCCEEEEEEccCC
Confidence                        66999999999764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=5.5e-20  Score=190.83  Aligned_cols=197  Identities=11%  Similarity=0.098  Sum_probs=146.5

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC------------------------------
Q 008356            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR------------------------------   50 (568)
Q Consensus         2 fSpdG~~L-asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~------------------------------   50 (568)
                      |.++++.+ ++++.|+.|+|||+.+++.+..+.  +...|.+++|+++.-                              
T Consensus        66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~  143 (355)
T 3vu4_A           66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVC  143 (355)
T ss_dssp             ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEE
T ss_pred             EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceE
Confidence            45666766 567778999999999999888887  445677788876420                              


Q ss_pred             ----eEEEE--EeCCCeEEEEECCCCC---------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEE
Q 008356           51 ----HLLVT--AGDDGTLHLWDTTGRS---------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK-LYTY  108 (568)
Q Consensus        51 ----~lLaT--gs~DGtV~VWDl~t~~---------------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGt-V~IW  108 (568)
                          .+++.  |+.||.|++||+....               +.+..+.+|...|++++|+|++++|++++.|++ |++|
T Consensus       144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence                12333  5788889999987643               015678899999999999999999999999998 9999


Q ss_pred             ECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc-eEEEee------c-------------C
Q 008356          109 DPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-LTVLRA------C-------------S  165 (568)
Q Consensus       109 Dlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~-v~~l~~------~-------------~  165 (568)
                      |+++++++..+.   |...|.+++|+|++++|++++.|+.|+|||++..... ...+..      +             .
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD  303 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence            999999998885   8999999999999999999999999999999764211 111100      0             0


Q ss_pred             CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          166 SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       166 h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +......++|+++            +..++.++.|+.+++|++....
T Consensus       304 ~~~~~~~~a~~~d------------~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          304 KHVRGCKIAWISE------------SSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             TTCCCCEEEESSS------------SEEEEEETTTTEEEEEEEEEET
T ss_pred             CCCCceEEEEeCC------------CCEEEEEeCCCeEEEEEEEcCC
Confidence            1112244556554            4455556679999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.3e-20  Score=205.14  Aligned_cols=184  Identities=12%  Similarity=0.154  Sum_probs=147.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCC----CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc----
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP----   72 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~----~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~----   72 (568)
                      +|+|+|++||+++.||.|+|||.+.  ++..+. ++.    ..+.+++|+|+|+ +|++|++||+|+|||+.++..    
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCcccccc
Confidence            5999999999999999999999643  555665 442    2699999999998 899999999999999988752    


Q ss_pred             --eeEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eEe--ecCCCeEEEEEecCCCEEEEEE
Q 008356           73 --KVSWL----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---SCI--TYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        73 --~v~~l----~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v---~~~--~h~~~ItsLafsPdg~~LasGs  141 (568)
                        .+..+    .+|...|.+++|+|++  +++++.|+.|++||+.+++..   ..+  .|...|.+++|+  +++||+++
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence              24555    6788899999999999  888999999999999887743   344  477889999999  68999887


Q ss_pred             cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEE--ccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW--QRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLaf--spdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                       ++.|++||+.+...  ..+. .+|...|..+.|  +|++..++.+            ..||+ ++|...
T Consensus       244 -~~tIkLWd~~~~~~--~~~~-~gh~~~V~~va~~~s~d~~~La~a------------~edG~-klw~~d  296 (588)
T 2j04_A          244 -PGYVHKIDLKNYSI--SSLK-TGSLENFHIIPLNHEKESTILLMS------------NKTSY-KVLLED  296 (588)
T ss_dssp             -SSEEEEEETTTTEE--EEEE-CSCCSCCCEEEETTCSSCEEEEEC------------SSCEE-EEEESS
T ss_pred             -CCeEEEEECCCCeE--EEEE-cCCCceEEEEEeeeCCCCCEEEEE------------cCCCC-EEEeec
Confidence             69999999998631  1222 379999999999  8876555554            44666 666654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.85  E-value=3.4e-20  Score=187.49  Aligned_cols=134  Identities=14%  Similarity=0.259  Sum_probs=116.6

Q ss_pred             EECCCCceeEEeeCCCCCcEEEEEEccCC--CeEEEEEeCCCeEEEEECCC-CCceeEEeccCCCCeEEEEEcCCCCEEE
Q 008356           21 HNLASGAKAAELKDPNEQVLRVLDYSRNS--RHLLVTAGDDGTLHLWDTTG-RSPKVSWLKQHSAPTAGISFSSDDKIIA   97 (568)
Q Consensus        21 WDl~tg~~v~~l~~~h~~~Vs~Lafspdg--~~lLaTgs~DGtV~VWDl~t-~~~~v~~l~~H~~~VtslafsPdg~~La   97 (568)
                      ++....+.+..+.+ |...|.+++|+|++  ..+|++|+.||.|+|||+.+ .......+..|...|++++|+|++++|+
T Consensus        24 ~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           24 DNHNPMKDIEVTSS-PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCTTCCEECSSC-CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCCcceeEeccC-CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            34444555555554 78899999999995  34899999999999999987 4444477889999999999999999999


Q ss_pred             EEeCCCeEEEEECCCCceeeEeecCCCeEEEEE--ecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           98 SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAF--IDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        98 Sgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLaf--sPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      +++.|+.|++||+++++.+....|...|.+++|  ++++++|++++.||.|++||+++..
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            999999999999999998888899999999999  8899999999999999999998653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.85  E-value=5.9e-20  Score=182.86  Aligned_cols=120  Identities=16%  Similarity=0.260  Sum_probs=105.5

Q ss_pred             CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 008356           35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYD  109 (568)
Q Consensus        35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWD  109 (568)
                      .|...|.+++|+|+++ +|++|+.||.|++||+.....   ....+..|...|++++|+|  ++++|++++.|+.|++||
T Consensus         9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            4888999999999998 899999999999999986542   3556778999999999999  699999999999999999


Q ss_pred             CCCC---------ceeeEe-ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCC
Q 008356          110 PGSR---------RPSSCI-TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       110 lrt~---------~~v~~~-~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ++++         +.+..+ .|...|.+++|+|+  +.+|++++.||.|++||++...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            9886         334444 68899999999999  9999999999999999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.85  E-value=6.2e-20  Score=192.26  Aligned_cols=195  Identities=8%  Similarity=0.047  Sum_probs=159.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeC----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~----~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      +|+|++.++++++.++.|++||+.+++.+..+..    .|...|.+++|++++. ++++++.|+.|++||+.+.+. +..
T Consensus       129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~-~~~  206 (433)
T 3bws_A          129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAY-KAT  206 (433)
T ss_dssp             EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCE-EEE
T ss_pred             EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceE-EEE
Confidence            3788677777788889999999999988764321    3667899999999886 899999999999999988763 566


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE--------cCCeEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT--------SNGRVV  147 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs--------~DG~V~  147 (568)
                      +..|...+.+++|+|++++++++ +.|+.|++||+++++.+..+.....+.+++|+|++++|++++        .|+.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence            77899999999999999988554 489999999999999888887777899999999999999988        488999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +||+++.+ ....+   .|...+.+++|+|++++           +++++..|+.|++||+....
T Consensus       287 ~~d~~~~~-~~~~~---~~~~~~~~~~~~~~g~~-----------l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          287 IYSMDKEK-LIDTI---GPPGNKRHIVSGNTENK-----------IYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEETTTTE-EEEEE---EEEECEEEEEECSSTTE-----------EEEEETTTTEEEEEETTTTE
T ss_pred             EEECCCCc-EEeec---cCCCCcceEEECCCCCE-----------EEEEecCCCEEEEEECCCCc
Confidence            99999763 23333   45668899999997544           34455669999999987544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=1.8e-19  Score=186.17  Aligned_cols=195  Identities=14%  Similarity=0.115  Sum_probs=157.0

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~L-asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+|++++| ++++.|+.|++||+.+++.+..+..++  .+.+++|+|+++.+++++..++.|++||+.+++. +..+. 
T Consensus        38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-  113 (391)
T 1l0q_A           38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-  113 (391)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-
T ss_pred             EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-
Confidence            488999987 566689999999999999988887533  7899999999986667777889999999988763 34444 


Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEE-EEEEcCCeEEEEECCCCCCc
Q 008356           80 HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL-TAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        80 H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~L-asGs~DG~V~VWDlrt~~~~  157 (568)
                      +...+.+++|+|++++| ++++.|+.|++||+++++.+..+.....+.+++|+|++++| +++..++.|++||+++.. .
T Consensus       114 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~  192 (391)
T 1l0q_A          114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-V  192 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-E
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-E
Confidence            44568999999999977 68888999999999999988888777888999999999887 567788999999999873 3


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ...+   .+...+.+++|+|++++++.+..         ...++.|++||++...
T Consensus       193 ~~~~---~~~~~~~~~~~~~~g~~l~~~~~---------~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          193 IDTV---KVEAAPSGIAVNPEGTKAYVTNV---------DKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEEE---ECSSEEEEEEECTTSSEEEEEEE---------CSSCCEEEEEETTTTE
T ss_pred             EEEE---ecCCCccceEECCCCCEEEEEec---------CcCCCcEEEEECCCCe
Confidence            3333   35678999999998776655411         0158999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.9e-20  Score=206.95  Aligned_cols=187  Identities=11%  Similarity=0.054  Sum_probs=145.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----------------------------eeEEeeCCCCCcEEEEEEccCCCe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA-----------------------------KAAELKDPNEQVLRVLDYSRNSRH   51 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~-----------------------------~v~~l~~~h~~~Vs~Lafspdg~~   51 (568)
                      +|+|||+++|+++.|++|+  |...++                             ....+...+.+.|.+++|+|+|. 
T Consensus        22 ~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~-   98 (588)
T 2j04_A           22 TWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD-   98 (588)
T ss_dssp             EECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS-
T ss_pred             EECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCC-
Confidence            5899999999999999995  433332                             11122213467899999999998 


Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------eeEe
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA-----PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-------SSCI  119 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~-----~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~-------v~~~  119 (568)
                      +|++++.||.|++||..+   .+..+. |..     .|.+++|+||+++|++|+.||+|++||+.++..       +..+
T Consensus        99 ~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti  174 (588)
T 2j04_A           99 WMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI  174 (588)
T ss_dssp             CEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence            899999999999999654   355556 665     499999999999999999999999999998753       3443


Q ss_pred             -----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356          120 -----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (568)
Q Consensus       120 -----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~--~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~  192 (568)
                           +|...|.+++|+|+|  +++++.|+.|++||+.+...  ....+. .+|...|.+++|+  +++|+++       
T Consensus       175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa-------  242 (588)
T 2j04_A          175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLT-------  242 (588)
T ss_dssp             ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEE-------
T ss_pred             ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEE-------
Confidence                 356799999999999  88899999999999988753  123342 2688899999998  4444433       


Q ss_pred             EEEEecCCCcEEcCCCCCCC
Q 008356          193 ALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWDlr~~~  212 (568)
                           + ++.|++||+....
T Consensus       243 -----~-~~tIkLWd~~~~~  256 (588)
T 2j04_A          243 -----C-PGYVHKIDLKNYS  256 (588)
T ss_dssp             -----C-SSEEEEEETTTTE
T ss_pred             -----e-CCeEEEEECCCCe
Confidence                 4 6899999987644

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.7e-20  Score=217.51  Aligned_cols=208  Identities=15%  Similarity=0.147  Sum_probs=155.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCcee----EEee------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKA----AELK------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v----~~l~------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +|+|++++|++|+.||+|++||+.++...    ..+.      ..|...|.+|+|+|+++ +|++|+.||+|+|||+.+.
T Consensus       442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEEC
T ss_pred             cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCc
Confidence            47899999999999999999999877421    1111      13677899999999998 8999999999999999755


Q ss_pred             C--------------------------------------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008356           71 S--------------------------------------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLY  106 (568)
Q Consensus        71 ~--------------------------------------------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~  106 (568)
                      +                                            ..+..+.+|.+.|++++|+|+| +|++|+.|++|+
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~  599 (902)
T 2oaj_A          521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLM  599 (902)
T ss_dssp             CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEE
T ss_pred             cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEE
Confidence            2                                            1245678899999999999999 999999999999


Q ss_pred             EEECCCCceeeE-----e--ecCCCeEEEEEe-----cCC---CEEEEEEcCCeEEEEEC---CCCCCceEEEee---cC
Q 008356          107 TYDPGSRRPSSC-----I--TYEAPFSSLAFI-----DDD---WILTAGTSNGRVVFYDI---RGKPQPLTVLRA---CS  165 (568)
Q Consensus       107 IWDlrt~~~v~~-----~--~h~~~ItsLafs-----Pdg---~~LasGs~DG~V~VWDl---rt~~~~v~~l~~---~~  165 (568)
                      +||++++..+..     +  .|...|++++|+     |||   .+|++|+.|++|++||+   .++. ....+..   ..
T Consensus       600 lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~-~~~~~~~~~~~~  678 (902)
T 2oaj_A          600 LIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK-FDVQLMDITNVT  678 (902)
T ss_dssp             EEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC-EEEEEEEEEECC
T ss_pred             EEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc-EEEEecCceecC
Confidence            999988766531     2  577889999999     885   89999999999999999   4543 2233331   12


Q ss_pred             CCCCeeEEE-EccCCCeEEEe----------ccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          166 SSEAVSSLC-WQRAKPVFIDE----------TTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       166 h~~~VtsLa-fspdg~~Las~----------s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      |.++|..++ |+.+....+..          +...++ +++.++ +..|++|++.....
T Consensus       679 ~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~l~~~-~~~ir~~~~~~~k~  735 (902)
T 2oaj_A          679 SKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPG-IVLITG-FDDIRLITLGKSKS  735 (902)
T ss_dssp             SSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCE-EEEEEC-SSEEEEECTTCCCE
T ss_pred             CCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCe-EEEEEe-ccceEEEeCccccc
Confidence            457888777 66332221111          011233 344444 88999999876443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=3.3e-19  Score=188.88  Aligned_cols=183  Identities=18%  Similarity=0.264  Sum_probs=157.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      ++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++  + ++++|+.||.|++||+.+++ .+..+..|...|
T Consensus       168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v  242 (445)
T 2ovr_B          168 RDNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAV  242 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCC-EEEEEECCSSCE
T ss_pred             cCCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCc-EEEEEcCCcccE
Confidence            367999999999999999999999988886 777889999963  3 79999999999999998877 467788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      .++.|  ++++|++++.|+.|++||+++++++..+ .|...|.+++|  ++.+|++++.||.|++||+++.. .+..+. 
T Consensus       243 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-  316 (445)
T 2ovr_B          243 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLT-  316 (445)
T ss_dssp             EEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEEC-
T ss_pred             EEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEc-
Confidence            99999  6889999999999999999999888877 58889999999  78999999999999999999874 444444 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       +|...+.++.+++              .++++++.|+.|++||++....
T Consensus       317 -~~~~~v~~~~~~~--------------~~l~~~~~dg~i~vwd~~~~~~  351 (445)
T 2ovr_B          317 -GHQSLTSGMELKD--------------NILVSGNADSTVKIWDIKTGQC  351 (445)
T ss_dssp             -CCCSCEEEEEEET--------------TEEEEEETTSCEEEEETTTCCE
T ss_pred             -CCcccEEEEEEeC--------------CEEEEEeCCCeEEEEECCCCcE
Confidence             7888999888753              2566667799999999976543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=4.9e-19  Score=182.85  Aligned_cols=198  Identities=13%  Similarity=0.091  Sum_probs=159.2

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+|++++|++++ .++.|++||+.+++.+..+..  ...+.+++|+++++.++++++.|+.|++||+.+++. +..+..
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~  156 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSV  156 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEec
Confidence            4899999886655 569999999999998888774  345788999999986668888999999999988763 444444


Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCC
Q 008356           80 HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKP  155 (568)
Q Consensus        80 H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs---~DG~V~VWDlrt~~  155 (568)
                      | ..+.+++|+|++++| ++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++   .++.|++||+++.+
T Consensus       157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            4 557999999999887 677889999999999999888888888999999999999999988   68999999998873


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                       .+..+.  .| ..+.+++|+|+++++           +++++.|+.|++||+........+
T Consensus       236 -~~~~~~--~~-~~~~~~~~s~dg~~l-----------~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          236 -ITARIP--VG-PDPAGIAVTPDGKKV-----------YVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             -EEEEEE--CC-SSEEEEEECTTSSEE-----------EEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -EEEEEe--cC-CCccEEEEccCCCEE-----------EEEcCCCCEEEEEECCCCcEEEEE
Confidence             344444  33 457899999976554           344566999999999876544433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.84  E-value=9.8e-20  Score=190.71  Aligned_cols=205  Identities=11%  Similarity=0.068  Sum_probs=166.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+++++++++++.|+.|++||+.+++.+..+.. +...+.+++|+++++.+++++..|+.|++||+.+++. +..+.. .
T Consensus       177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~  253 (433)
T 3bws_A          177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-I  253 (433)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-C
T ss_pred             EcCCCEEEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-C
Confidence            678899999999999999999999998888875 6678899999999986556777899999999987763 444444 4


Q ss_pred             CCeEEEEEcCCCCEEEEEe--------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEE-EEEEcCCeEEEEECC
Q 008356           82 APTAGISFSSDDKIIASVG--------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL-TAGTSNGRVVFYDIR  152 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs--------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~L-asGs~DG~V~VWDlr  152 (568)
                      ..+.+++|+|++++|++++        .|+.|++||+++++.+..+.+...+.+++|+|+++.+ ++++.|+.|++||++
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            5599999999999999888        5889999999999888888777899999999999755 556889999999999


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC---CeEEEEecCCCcEEcCCCCCCCc
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA---ETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd---~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +.+ ....+   .+...+.+++|+|++++++++....+   ..++++++.|+.|++||+.....
T Consensus       334 ~~~-~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~  393 (433)
T 3bws_A          334 EKK-VQKSI---PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV  393 (433)
T ss_dssp             TTE-EEEEE---ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred             CCc-EEEEe---cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence            763 33333   36788999999999998877643222   23556667789999999876443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.83  E-value=1e-19  Score=189.95  Aligned_cols=152  Identities=9%  Similarity=0.070  Sum_probs=129.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCce--
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPK--   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~~~~--   73 (568)
                      +|+|||++|++++.+ .+++|+..+++.+.. ....|...|++++|+|+++ ++++++.|+    .+++||+......  
T Consensus       183 ~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~  260 (365)
T 4h5i_A          183 HFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVL  260 (365)
T ss_dssp             EECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred             EEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecce
Confidence            489999999999854 577777777776543 3444778899999999997 788888776    6888998665422  


Q ss_pred             -eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           74 -VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        74 -v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                       ...+..|...|++++|+|++++|++|+.|++|+|||+++++++..+  .|...|++++|+|||++|++|+.|++|+|||
T Consensus       261 ~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          261 RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence             3457789999999999999999999999999999999999988775  5999999999999999999999999999999


Q ss_pred             CCCC
Q 008356          151 IRGK  154 (568)
Q Consensus       151 lrt~  154 (568)
                      +...
T Consensus       341 ip~~  344 (365)
T 4h5i_A          341 LPLN  344 (365)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            9654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.79  E-value=1.5e-17  Score=176.74  Aligned_cols=189  Identities=13%  Similarity=0.139  Sum_probs=149.7

Q ss_pred             CccCCCCEEEEEECCC---cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLSG---DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG---~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~   75 (568)
                      +|+|||++|++++.++   .|++||+.+++... +.. +...+.+++|+|+++.++++++.|+.  |++||+.+++  ..
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~  260 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR  260 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EE
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec-CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EE
Confidence            4899999999999875   99999999888753 443 56678999999999965557777665  9999998876  46


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY  149 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW  149 (568)
                      .+..|...+.+++|+|++++|++++. ++  .|++||+.+++......+...+.+++|+|+|++|++++.+   ..|++|
T Consensus       261 ~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          261 QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence            77888899999999999999988886 44  7888899988765544567788999999999999988864   589999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC--cEEcCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD--SILMPDPL  209 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg--~V~VWDlr  209 (568)
                      |+.+...  ..+.  .|. .+.+++|+|+|++|+.++.           .++  .|++||+.
T Consensus       341 d~~~~~~--~~l~--~~~-~~~~~~~spdg~~l~~~s~-----------~~~~~~l~~~d~~  386 (415)
T 2hqs_A          341 DLATGGV--QVLS--STF-LDETPSLAPNGTMVIYSSS-----------QGMGSVLNLVSTD  386 (415)
T ss_dssp             ETTTCCE--EECC--CSS-SCEEEEECTTSSEEEEEEE-----------ETTEEEEEEEETT
T ss_pred             ECCCCCE--EEec--CCC-CcCCeEEcCCCCEEEEEEc-----------CCCccEEEEEECC
Confidence            9998742  3333  343 8999999999887766522           122  68888874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.78  E-value=3.1e-18  Score=179.15  Aligned_cols=147  Identities=12%  Similarity=0.116  Sum_probs=115.6

Q ss_pred             ccC---CCCEEEEEECCCcEEEEECCCCceeEEeeCCCC--CcEEEEEEccCCCeE-----------EEEEeCCCeEEEE
Q 008356            2 YNC---KDEHLASISLSGDLILHNLASGAKAAELKDPNE--QVLRVLDYSRNSRHL-----------LVTAGDDGTLHLW   65 (568)
Q Consensus         2 fSp---dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~--~~Vs~Lafspdg~~l-----------LaTgs~DGtV~VW   65 (568)
                      |++   ++++|++++.|++|+|||+.+++++..+.+++.  ..+.+++|+|++..+           +++|+.|++|++|
T Consensus       186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW  265 (356)
T 2w18_A          186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI  265 (356)
T ss_dssp             EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred             eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence            455   668899999999999999999999999987543  467778999998732           2678899999999


Q ss_pred             ECCCCCceeEEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCe-EEEEEecCCCEEE
Q 008356           66 DTTGRSPKVSWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPF-SSLAFIDDDWILT  138 (568)
Q Consensus        66 Dl~t~~~~v~~l-----~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~I-tsLafsPdg~~La  138 (568)
                      |..+++.. ..+     .+|...+.+..++  +.++++++.|++|+|||+.+++++..+. |...+ .+++|+|||++|+
T Consensus       266 d~~tgk~l-~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          266 NPKTTLSV-GVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             ETTTTEEE-EEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             ECCCCEEE-EEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence            99887642 222     3666665544444  7899999999999999999999998884 66554 4689999999999


Q ss_pred             EEEcCCeEEEEEC
Q 008356          139 AGTSNGRVVFYDI  151 (568)
Q Consensus       139 sGs~DG~V~VWDl  151 (568)
                      +|+.|++|+|||+
T Consensus       343 SGS~D~TIklWd~  355 (356)
T 2w18_A          343 AGQKDGNIFVYHY  355 (356)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             EEECCCcEEEecC
Confidence            9999999999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=1.6e-18  Score=186.09  Aligned_cols=202  Identities=14%  Similarity=0.104  Sum_probs=146.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC----------ceeEE----eeCCCCCcEEEEEEccCCCeEEE----EEeCCCeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG----------AKAAE----LKDPNEQVLRVLDYSRNSRHLLV----TAGDDGTL   62 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg----------~~v~~----l~~~h~~~Vs~Lafspdg~~lLa----Tgs~DGtV   62 (568)
                      ++++++.+|++++.++ |+||+....          ..+..    ...++...|.+++|+++++ +|+    +|+.|+.|
T Consensus        43 avs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~sgs~d~~v  120 (434)
T 2oit_A           43 AVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMSSEYGSII  120 (434)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEETTTEEEE
T ss_pred             EEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEeccCCCceE
Confidence            3678889999999888 899875311          01111    1112456799999999998 566    78899999


Q ss_pred             EEEECCCC-----Cc-----eeEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeE-eecCCCeEEEEE
Q 008356           63 HLWDTTGR-----SP-----KVSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSC-ITYEAPFSSLAF  130 (568)
Q Consensus        63 ~VWDl~t~-----~~-----~v~~l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~-~~h~~~ItsLaf  130 (568)
                      +|||+.+.     ..     ....+.+|...|++++|+|+ +++|++++.||+|++||++++..+.. ..|...|.+++|
T Consensus       121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w  200 (434)
T 2oit_A          121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW  200 (434)
T ss_dssp             EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE
T ss_pred             EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE
Confidence            99998543     11     14556679999999999996 89999999999999999998865533 357889999999


Q ss_pred             ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356          131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       131 sPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      +|+|++|++|+.||.|++||++.  .....+..+     .|...|.+++|++++.+++......+..     .....+++
T Consensus       201 spdg~~lasgs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~-----~~~~~v~i  273 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLPTL--QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL-----ETSPDVVM  273 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTC--CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS-----SSCCEEEE
T ss_pred             cCCCCEEEEEcCCCcEEEEccCC--cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc-----CCCCceEE
Confidence            99999999999999999999983  223333321     1334899999999776664432111000     01234899


Q ss_pred             CCCCCC
Q 008356          206 PDPLPS  211 (568)
Q Consensus       206 WDlr~~  211 (568)
                      ||++..
T Consensus       274 ~~l~~~  279 (434)
T 2oit_A          274 ALLPKK  279 (434)
T ss_dssp             EECCCT
T ss_pred             EEeccC
Confidence            998764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=4.8e-17  Score=158.53  Aligned_cols=204  Identities=12%  Similarity=0.012  Sum_probs=145.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEE--ECCCCCceeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLW--DTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs--~DGtV~VW--Dl~t~~~~v~   75 (568)
                      +|+|+|++|++++ ++.|++||+.+ ++.......++...+.+++|+|+++ +|+++.  .++.+.||  |+.+..  ..
T Consensus        48 ~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~--~~  123 (297)
T 2ojh_A           48 NWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT--PR  123 (297)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC--CE
T ss_pred             EECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc--eE
Confidence            4899999999986 78999999998 7776666555557788899999998 677777  33445555  445544  34


Q ss_pred             EeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC--CCCceeeEeecCCCeEEEEEecCCCEEEEEE-cCCeEEEEEC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDP--GSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDI  151 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDl--rt~~~v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDl  151 (568)
                      .+..+. .+.+++|+|++++|+ ++..|+.+++|++  .+++......+...+.+++|+|++++|++++ .++.++||++
T Consensus       124 ~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~  202 (297)
T 2ojh_A          124 LMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV  202 (297)
T ss_dssp             ECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence            444444 499999999999887 7788998888885  4555544456778899999999999888776 5899999998


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +........+.  .|...+..++|+|++++|+..+....... .....+..|++||+....
T Consensus       203 ~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          203 RVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFD-HPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             ETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCS-CCSSEEEEEEEEETTSCS
T ss_pred             CCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCc-ccccCceEEEEEecCCCC
Confidence            74333344444  57778999999999888766532111000 000013568999986543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.73  E-value=3.4e-16  Score=166.35  Aligned_cols=188  Identities=13%  Similarity=0.108  Sum_probs=145.6

Q ss_pred             CCEEEEEECC------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCCceeEE
Q 008356            6 DEHLASISLS------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSW   76 (568)
Q Consensus         6 G~~LasGs~D------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG---tV~VWDl~t~~~~v~~   76 (568)
                      +..|+.++.+      +.|++||+. +.....+.. |...+.+++|+|+++ .|+.++.++   .|++||+.+++  ...
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~-~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~--~~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA--VRQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEE-ESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCC--EEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeC-CCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCc--EEE
Confidence            6677776654      799999996 444556665 567889999999998 677777775   99999999877  345


Q ss_pred             eccCCCCeEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYD  150 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~La-Sgs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWD  150 (568)
                      +..|...+.+++|+|++++|+ +++.|+  .|++||+++++......+...+.+++|+|||++|++++. ++  .|++||
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            777888999999999999887 666655  499999999887665678888999999999999998886 44  688889


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      +.+...  ..+.  .|...+.+++|+|+|++|+.....         ..+..|++||+...
T Consensus       298 ~~~~~~--~~l~--~~~~~~~~~~~spdG~~l~~~~~~---------~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          298 INGGAP--QRIT--WEGSQNQDADVSSDGKFMVMVSSN---------GGQQHIAKQDLATG  345 (415)
T ss_dssp             TTSSCC--EECC--CSSSEEEEEEECTTSSEEEEEEEC---------SSCEEEEEEETTTC
T ss_pred             CCCCCE--EEEe--cCCCcccCeEECCCCCEEEEEECc---------CCceEEEEEECCCC
Confidence            887642  3333  466789999999998887766321         11467899998653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=1.9e-15  Score=152.31  Aligned_cols=200  Identities=13%  Similarity=0.087  Sum_probs=148.4

Q ss_pred             CccCCCCE-EEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEH-LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~-LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|.+++++ +++...++.|++||+.+++.+..+..+ ...+ .++|+|+++.+++++..++.|++||+.+++.....+..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            36666666 566677899999999999988887753 4445 89999999855566666899999999887743556666


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE-EcCCe-EEEEECCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGR-VVFYDIRGK  154 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG-s~DG~-V~VWDlrt~  154 (568)
                      +..++.+++|+|++++|+++..++   .|++||+.+++.+..+.......+++|+|+|++|+++ ..++. |.+|+++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            767666699999999999555553   8999999999988888777788999999999866555 55588 999999865


Q ss_pred             CCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          155 PQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       155 ~~~v~~-l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ...... .....+...+..++|+|+|+++           +++...++.|.+||+.....
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l-----------~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFA-----------FVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEE-----------EEEETTTTEEEEEECSSTTS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEE-----------EEEeCCCCeEEEEECCCCcc
Confidence            432211 1112345568999999987654           33344588999999875443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.71  E-value=2e-16  Score=169.79  Aligned_cols=198  Identities=12%  Similarity=0.158  Sum_probs=141.8

Q ss_pred             CccCCCCEEE----EEECCCcEEEEECCCC--------ce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 008356            1 MYNCKDEHLA----SISLSGDLILHNLASG--------AK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW   65 (568)
Q Consensus         1 afSpdG~~La----sGs~DG~V~VWDl~tg--------~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW   65 (568)
                      +|+|+|++|+    +|+.|+.|+|||+.++        +.   +..+. .|...|.+++|+|+..++|++++.||+|++|
T Consensus        99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw  177 (434)
T 2oit_A           99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPTVPSMVAVCLADGSIAVL  177 (434)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence            4899999999    6788999999998654        22   22333 3678899999999855589999999999999


Q ss_pred             ECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-c-------CCCeEEEEEecCCCEE
Q 008356           66 DTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-Y-------EAPFSSLAFIDDDWIL  137 (568)
Q Consensus        66 Dl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h-------~~~ItsLafsPdg~~L  137 (568)
                      |+++... ......|...|++++|+|++++|++|+.||.|++||++ ++....+. +       ...|.+++|++++.++
T Consensus       178 D~~~~~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          178 QVTETVK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             EESSSEE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             EcCCCcc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence            9988753 44556788999999999999999999999999999998 55444431 2       2278999999988777


Q ss_pred             EEE-EcCC------eEEEEECCCCCC--ceEEEeec-------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356          138 TAG-TSNG------RVVFYDIRGKPQ--PLTVLRAC-------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (568)
Q Consensus       138 asG-s~DG------~V~VWDlrt~~~--~v~~l~~~-------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg  201 (568)
                      ++. ..||      .+++||++....  +....+..       +...+-..+.+-++.++++.++....+.-++....|+
T Consensus       256 ~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~  335 (434)
T 2oit_A          256 IVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQ  335 (434)
T ss_dssp             EEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTS
T ss_pred             EEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCC
Confidence            553 3443      399999986531  22222211       1122223344446667776666666666666655443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.70  E-value=1.5e-15  Score=153.64  Aligned_cols=198  Identities=10%  Similarity=0.069  Sum_probs=153.3

Q ss_pred             CccCCCCEEEEEEC-------CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 008356            1 MYNCKDEHLASISL-------SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK   73 (568)
Q Consensus         1 afSpdG~~LasGs~-------DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~   73 (568)
                      +|+|+|++|++++.       ++.|.+||+.+++.+..+..  ...+..++|+++++.++++...++.|.+||..+++. 
T Consensus        47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-  123 (353)
T 3vgz_A           47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV-  123 (353)
T ss_dssp             EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE-
T ss_pred             EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee-
Confidence            47899999988874       56899999999998888774  233567899999986677777789999999988773 


Q ss_pred             eEEeccCCC---------CeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEE
Q 008356           74 VSWLKQHSA---------PTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        74 v~~l~~H~~---------~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs  141 (568)
                      +..+..+..         .+.+++|+|+++++++++  .++.|.+||+.+++.+..+. +...+.+++|+|++++|+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  203 (353)
T 3vgz_A          124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN  203 (353)
T ss_dssp             EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC
T ss_pred             EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEc
Confidence            344444332         278999999999887776  48899999999999888886 666689999999999999999


Q ss_pred             cCCeEEEEECCCCCCceEEEee--cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          142 SNGRVVFYDIRGKPQPLTVLRA--CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~~v~~l~~--~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .++.|.+||+.+.+ ....+..  .++...+..++|+|++++++.           +...++.|.+||+.....
T Consensus       204 ~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----------~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          204 ADGELITIDTADNK-ILSRKKLLDDGKEHFFINISLDTARQRAFI-----------TDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEEEETTTTEEEE-----------EESSSSEEEEEETTTCCE
T ss_pred             CCCeEEEEECCCCe-EEEEEEcCCCCCCcccceEEECCCCCEEEE-----------EeCCCCEEEEEECCCCcE
Confidence            99999999998873 3333332  124556888999998765433           334468999999876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.69  E-value=1.8e-15  Score=151.84  Aligned_cols=196  Identities=10%  Similarity=0.042  Sum_probs=138.1

Q ss_pred             CccCCCCEEEEEECC-CcEEEEECC--CCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ce
Q 008356            1 MYNCKDEHLASISLS-GDLILHNLA--SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PK   73 (568)
Q Consensus         1 afSpdG~~LasGs~D-G~V~VWDl~--tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~   73 (568)
                      +|+|+|++|++++.+ +.|.+|++.  +++.  +..+.. + ..+..++|+|+++.+++++..++.|++||+..+.  ..
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~  121 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  121 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence            489999999998886 999999997  5553  344543 2 2667899999998545555568999999994221  12


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Cceee----Ee--ecCCCeEEEEEecCCCEEEEEE-cCC
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRPSS----CI--TYEAPFSSLAFIDDDWILTAGT-SNG  144 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt-~~~v~----~~--~h~~~ItsLafsPdg~~LasGs-~DG  144 (568)
                      ...+. ....+.+++|+|++++|++++ .++.|++||+.+ ++...    .+  .....+..++|+|++++|++++ .++
T Consensus       122 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          122 VDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            33333 344589999999999888887 899999999987 55432    12  2445788999999999776665 789


Q ss_pred             eEEEEECCCCCCc---eEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          145 RVVFYDIRGKPQP---LTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       145 ~V~VWDlrt~~~~---v~~l~~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .|.+||++.....   ...+...    .....+..++|+|++++|+           ++...++.|.+||+..
T Consensus       201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~-----------v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY-----------ACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE-----------EEETTTTEEEEEEECT
T ss_pred             EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE-----------EEecCCCEEEEEEEcC
Confidence            9999999642211   1222211    1123567899999866543           3344589999999874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.69  E-value=6.3e-15  Score=162.85  Aligned_cols=193  Identities=13%  Similarity=0.100  Sum_probs=145.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEEC--CCCceeEEeeCCCCCcEEEEEEcc----CCCeEEEEEe-CCCeEEEEECCCCCce
Q 008356            1 MYNCKDEHLASISLSGDLILHNL--ASGAKAAELKDPNEQVLRVLDYSR----NSRHLLVTAG-DDGTLHLWDTTGRSPK   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl--~tg~~v~~l~~~h~~~Vs~Lafsp----dg~~lLaTgs-~DGtV~VWDl~t~~~~   73 (568)
                      +|+|||++|++++.|+.|.+||+  .+++.+..+.  +...++.++|+|    +++ ++++++ .+++|.+||..+.++ 
T Consensus       185 ~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~-  260 (543)
T 1nir_A          185 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEP-  260 (543)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCE-
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEecccccc-
Confidence            48999999999999999999999  8888888887  345678899999    998 566555 689999999988774 


Q ss_pred             eEEecc----------CC-CCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceee--EeecCCCeEEEEEecCCCEEEE
Q 008356           74 VSWLKQ----------HS-APTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        74 v~~l~~----------H~-~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~--~~~h~~~ItsLafsPdg~~Las  139 (568)
                      +..+..          |. ..+..+.++|++. ++++...+++|.+||+.+.+.+.  .+.+...+..++|+|+|++|++
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~v  340 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMT  340 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEE
Confidence            344433          22 3789999999655 56677789999999998876544  5567777889999999998776


Q ss_pred             EE-cCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec-CCCcEEcCCCCC
Q 008356          140 GT-SNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLP  210 (568)
Q Consensus       140 Gs-~DG~V~VWDlrt~~~~v~~l~~~--~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s-~Dg~V~VWDlr~  210 (568)
                      +. .++.|.+||+.+++ ....+...  .|.+....+ ++|+           ++.+++++. .|++|.+||+.+
T Consensus       341 a~~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~-----------~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          341 AANNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPK-----------YGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEGGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETT-----------TEEEEEEEBSSSSEEEEEECCT
T ss_pred             EecCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCC-----------CccEEEeccCCCceEEEEEeCC
Confidence            65 58999999999873 44444421  254444333 4554           234455554 489999999877

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=6.3e-16  Score=150.59  Aligned_cols=182  Identities=12%  Similarity=0.026  Sum_probs=135.6

Q ss_pred             CccCCCCEEEEEEC--CCcEEE--EECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISL--SGDLIL--HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~--DG~V~V--WDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      +|+|+|++|++++.  ++.+.|  |++.+++ ...+.. + ..+..++|+|+++.+++++..|+.++||+++........
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            48999999999983  344555  4555544 344443 2 347889999999966668889999999997433323567


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCceeeEe-ecCCCeEEEEEecCCCEEEEEEcC----------
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSN----------  143 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlr-t~~~v~~~-~h~~~ItsLafsPdg~~LasGs~D----------  143 (568)
                      +..|...+.+++|+|++++|+.++ .++.+++|++. .+..+..+ .+...+.+++|+|++++|++++.+          
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  247 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL  247 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence            778888999999999999888766 58889999875 33344444 566778999999999999988765          


Q ss_pred             -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       144 -G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                       +.|++||+++.+ ........+|...+.+++|+|++++|+.++
T Consensus       248 ~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          248 DVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             EEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             ceEEEEEecCCCC-ceeeeccCCCCcccccceECCCCCEEEEEE
Confidence             569999998764 333333336778899999999988877663

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=8.2e-15  Score=148.11  Aligned_cols=196  Identities=14%  Similarity=0.121  Sum_probs=149.2

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCC--------cEEEEEEccCCCeEEEEE-eCCCeEEEEECCCC
Q 008356            1 MYNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQ--------VLRVLDYSRNSRHLLVTA-GDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~--------~Vs~Lafspdg~~lLaTg-s~DGtV~VWDl~t~   70 (568)
                      +|+++|++++++. .++.|.+||+.+++.+..+..+...        .+.+++|+|+++.++++. ..++.|.+||..+.
T Consensus        95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A           95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred             EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence            3789999766554 4799999999999988888764322        268899999998555554 35889999999887


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-----cCCCeEEEEEecCCCEEEEEEc-CC
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTS-NG  144 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-----h~~~ItsLafsPdg~~LasGs~-DG  144 (568)
                      +. +..+..+...+.+++|+|++++|++++.++.|.+||+.+++.+..+.     +...+..++|+|++++|+++.. ++
T Consensus       175 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          175 KL-KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             EE-EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             ce-EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            63 45555466668999999999999999999999999999998877664     3456888999999998877765 49


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .|.+||+.+.+ ....+.. +  . ...++|+|+++++           +++...++.|.+||+.....
T Consensus       254 ~v~~~d~~~~~-~~~~~~~-~--~-~~~~~~s~dg~~l-----------~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          254 EVLVVDTRNGN-ILAKVAA-P--E-SLAVLFNPARNEA-----------YVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEEEEETTTCC-EEEEEEC-S--S-CCCEEEETTTTEE-----------EEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEECCCCc-EEEEEEc-C--C-CceEEECCCCCEE-----------EEEECCCCeEEEEECCCCeE
Confidence            99999998874 3444442 1  1 2568999976543           34444588999999876544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=5.1e-16  Score=174.75  Aligned_cols=198  Identities=11%  Similarity=0.088  Sum_probs=150.8

Q ss_pred             CccCCCCEEEEEEC-CC-----cEEEEECCCCceeEEeeCCCC-----------------------CcEEEEEEccCCCe
Q 008356            1 MYNCKDEHLASISL-SG-----DLILHNLASGAKAAELKDPNE-----------------------QVLRVLDYSRNSRH   51 (568)
Q Consensus         1 afSpdG~~LasGs~-DG-----~V~VWDl~tg~~v~~l~~~h~-----------------------~~Vs~Lafspdg~~   51 (568)
                      +|+|||++|++++. |+     .|++||+.+++....+..+..                       ..+..++|+|+|+ 
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~-  121 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ-  121 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS-
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC-
Confidence            48999999999998 88     899999999887766653211                       2367899999998 


Q ss_pred             EEEEEeCCCeEEEEECCCC---CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCC----
Q 008356           52 LLVTAGDDGTLHLWDTTGR---SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP----  124 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~---~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~----  124 (568)
                      +|++++. +.|++||+.++   .  ...+..|...+.+++|+||+++|+.++ ++.|++||+.+++..........    
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~--~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~  197 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAA--VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGN  197 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTS--CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred             EEEEEeC-CcEEEEECCCCCcce--EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceec
Confidence            5666665 99999999887   4  445677888899999999999999988 46899999998876655432221    


Q ss_pred             -------------eEEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC-CCCc
Q 008356          125 -------------FSSLAFIDDDWILTAGTSNG---------------------------------RVVFYDIRG-KPQP  157 (568)
Q Consensus       125 -------------ItsLafsPdg~~LasGs~DG---------------------------------~V~VWDlrt-~~~~  157 (568)
                                   +..++|+|||++|++++.|+                                 .|++||+.+ .. .
T Consensus       198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~  276 (741)
T 2ecf_A          198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-T  276 (741)
T ss_dssp             SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-C
T ss_pred             cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-e
Confidence                         47899999999999988765                                 789999987 64 3


Q ss_pred             eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ........|...+..++| |+|++|+......       ...+..|++||+....
T Consensus       277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~-------~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR-------DQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             EEECCCSCSSEEEEEEEE-EETTEEEEEEEET-------TSSEEEEEEEETTTCC
T ss_pred             EEecCCCCcceEEEEEEe-CCCCEEEEEEecc-------cCCeEEEEEEECCCCc
Confidence            332221247788999999 9999887652211       1235778888887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.68  E-value=2.6e-15  Score=165.96  Aligned_cols=198  Identities=12%  Similarity=0.166  Sum_probs=154.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl--~t~~~~v~~l~   78 (568)
                      +|+|++.+++++..|+.|.+||..+++++..+..++.  +..++|+|+++ +|++++.|+.|++||+  .+.+ .+..+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~-~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPT-KVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCE-EEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCC-EEEEECCCCeEEEEECcCCCCc-EEEEEe
Confidence            3678888899999999999999999999999985444  78899999998 7888999999999999  5655 344455


Q ss_pred             cCCCCeEEEEEcC----CCCEEEEEe-CCCeEEEEECCCCceeeEeec------------CCCeEEEEEecCCCE-EEEE
Q 008356           79 QHSAPTAGISFSS----DDKIIASVG-LDKKLYTYDPGSRRPSSCITY------------EAPFSSLAFIDDDWI-LTAG  140 (568)
Q Consensus        79 ~H~~~VtslafsP----dg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h------------~~~ItsLafsPdg~~-LasG  140 (568)
                       +...+..++|+|    +++++++++ .+++|.+||..+++++..+..            ...+..+.++|++.. +++.
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             455689999999    999999888 489999999999998877742            236889999997655 5556


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       141 s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      ..++.|.+||+....... .. ...+...+..+.|+|+|+++++           ++..++.|.+||+........
T Consensus       299 ~~~g~i~vvd~~~~~~l~-~~-~i~~~~~~~~~~~spdg~~l~v-----------a~~~~~~v~v~D~~tg~l~~~  361 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLT-VT-SIGAAPFLHDGGWDSSHRYFMT-----------AANNSNKVAVIDSKDRRLSAL  361 (543)
T ss_dssp             TTTTEEEEEECTTSSSCE-EE-EEECCSSCCCEEECTTSCEEEE-----------EEGGGTEEEEEETTTTEEEEE
T ss_pred             CCCCeEEEEEecCCCcce-eE-EeccCcCccCceECCCCCEEEE-----------EecCCCeEEEEECCCCeEEEe
Confidence            678999999998764432 11 1235677889999998776533           334588999999887654333

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.67  E-value=4.4e-15  Score=148.54  Aligned_cols=194  Identities=11%  Similarity=0.051  Sum_probs=140.7

Q ss_pred             CccCCCCEEEEE-ECCCcEEEEECCCCceeEEeeCCCC----CcEEEEEEccCCCeEEEEEe------------CCCeEE
Q 008356            1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAG------------DDGTLH   63 (568)
Q Consensus         1 afSpdG~~LasG-s~DG~V~VWDl~tg~~v~~l~~~h~----~~Vs~Lafspdg~~lLaTgs------------~DGtV~   63 (568)
                      +|+|+|++++++ ..++.|.+||+.+++.+..+...+.    ..+..++|+|+++ +|+++.            .++.|+
T Consensus        40 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~  118 (337)
T 1pby_B           40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEE
T ss_pred             EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC-EEEEEecccccccccccccCceEE
Confidence            478999876554 4578999999999998877764321    1456789999998 566554            579999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec----------------------
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY----------------------  121 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h----------------------  121 (568)
                      +||+.+.+. +..+.. ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..                      
T Consensus       119 v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  194 (337)
T 1pby_B          119 LYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES  194 (337)
T ss_dssp             EEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTT
T ss_pred             EEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccC
Confidence            999987663 333333 4568889999999988887  68899999988765543311                      


Q ss_pred             ---------------------------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356          122 ---------------------------------------------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus       122 ---------------------------------------------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                                                                   ...+.+++|+|++++|+++  ++.|.+||+.+.+ 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~-  271 (337)
T 1pby_B          195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA-  271 (337)
T ss_dssp             TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE-
T ss_pred             CCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc-
Confidence                                                         1134468999999999888  6899999998763 


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ....+.   ....+.+++|+|+|++++++            +.++.|++||+........+
T Consensus       272 ~~~~~~---~~~~~~~~~~s~dg~~l~~~------------~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          272 SIKRVP---LPHSYYSVNVSTDGSTVWLG------------GALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEEE---CSSCCCEEEECTTSCEEEEE------------SBSSEEEEEETTTCCEEEEE
T ss_pred             Ccceec---CCCceeeEEECCCCCEEEEE------------cCCCcEEEEECcCCcEEEEE
Confidence            333333   33567899999976655443            44899999998876554443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.67  E-value=2.8e-15  Score=151.02  Aligned_cols=197  Identities=6%  Similarity=0.026  Sum_probs=143.2

Q ss_pred             CccCCCCEEEEEECCC---cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCCcee--
Q 008356            1 MYNCKDEHLASISLSG---DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-LHLWDTTGRSPKV--   74 (568)
Q Consensus         1 afSpdG~~LasGs~DG---~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt-V~VWDl~t~~~~v--   74 (568)
                      +|+|+|++|+++..++   .|.+||+.+++.+..+..  .....+++|+|+++.++++...++. |.+|++.......  
T Consensus        90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~  167 (331)
T 3u4y_A           90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT  167 (331)
T ss_dssp             EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence            4789999999555553   899999999988887764  3445889999999877777777788 9999997544221  


Q ss_pred             -EEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCce---eeEeecCCCeEEEEEecCCCEEEEEE-cCCeEEE
Q 008356           75 -SWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVF  148 (568)
Q Consensus        75 -~~l~~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt~~~---v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~V  148 (568)
                       .........+.+++|+|++++++.+ ..++.|++||+.+++.   +..+.....+..++|+|+|++|+++. .++.|.+
T Consensus       168 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~  247 (331)
T 3u4y_A          168 GQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFN  247 (331)
T ss_dssp             EEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred             CCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence             1122345568999999999966554 4689999999999888   77777778889999999999877665 4778999


Q ss_pred             EECCCCCCc-eEEEeec--CCCCC---eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          149 YDIRGKPQP-LTVLRAC--SSSEA---VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       149 WDlrt~~~~-v~~l~~~--~h~~~---VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ||+.+.+.. +..+...  .+...   ...++|+|++++|           ++++..++.|.+||+..
T Consensus       248 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-----------~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          248 FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL-----------FISANISRELKVFTISG  304 (331)
T ss_dssp             EETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE-----------EEEETTTTEEEEEETTS
T ss_pred             EECCCCceeeecccccccccCCCCcccccceEECCCCCEE-----------EEecCCCCcEEEEEecC
Confidence            999876320 1111110  11222   2458999986654           33445578999999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=4.6e-15  Score=148.79  Aligned_cols=190  Identities=8%  Similarity=0.008  Sum_probs=134.0

Q ss_pred             CCEEEEE-ECCCcEEEEECC-CCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-CeEEEEECC--CCCce-eEEe
Q 008356            6 DEHLASI-SLSGDLILHNLA-SGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLWDTT--GRSPK-VSWL   77 (568)
Q Consensus         6 G~~LasG-s~DG~V~VWDl~-tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-GtV~VWDl~--t~~~~-v~~l   77 (568)
                      +++++++ +.++.|++||+. +++  .+..+.  +...+.+++|+|+++ +|++++.+ +.|++|+++  ++... +..+
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            3445544 679999999995 343  233333  555677899999998 56666655 999999997  44422 2333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC---CCceeeEeecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPG---SRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIR  152 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlr---t~~~v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlr  152 (568)
                      ..+. .+.+++|+|++++|++++. ++.|++||+.   ..+.+..+.....+.+++|+|++++|++++ .++.|++||+.
T Consensus        81 ~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           81 ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            3333 7899999999998876664 8899999994   334455555666799999999999888887 89999999998


Q ss_pred             CCCCceEEE--e-ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          153 GKPQPLTVL--R-ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       153 t~~~~v~~l--~-~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .........  . .......+..++|+|++++++           ++...++.|.+||+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~-----------~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY-----------CVNELNSSVDVWELKD  209 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE-----------EEETTTTEEEEEESSC
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEEE-----------EEeCCCCEEEEEEecC
Confidence            733322211  1 112345788999999876543           3334588999999854

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.66  E-value=9.2e-15  Score=146.20  Aligned_cols=145  Identities=13%  Similarity=0.089  Sum_probs=118.6

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC----
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH----   80 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~-~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H----   80 (568)
                      ++|++++.++.|++||+.+++.+..+...+.. .+..++|+|+++.+++++..++.|.+||+.+++. +..+. .+    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence            57899999999999999999988888743322 3677999999986677777889999999988763 33332 22    


Q ss_pred             CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           81 SAPTAGISFSSDDKIIASVG------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs------------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      ...+.+++|+|++++|+++.            .++.|.+||+.+++.+..+.....+.+++|+|++++|+++  ++.|++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            22678899999999998886            6799999999999888877767778899999999988888  688999


Q ss_pred             EECCCC
Q 008356          149 YDIRGK  154 (568)
Q Consensus       149 WDlrt~  154 (568)
                      ||+.+.
T Consensus       159 ~d~~~~  164 (337)
T 1pby_B          159 MDPEAG  164 (337)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            999876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.64  E-value=9.1e-16  Score=171.96  Aligned_cols=197  Identities=10%  Similarity=0.069  Sum_probs=145.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCC---cEEEEEEccCCCeEEEEEeCC---------CeEEEEECC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ---VLRVLDYSRNSRHLLVTAGDD---------GTLHLWDTT   68 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~---~Vs~Lafspdg~~lLaTgs~D---------GtV~VWDl~   68 (568)
                      +|+|||+++++ +.||.|++||+.+++....+.. +..   .|..++|+|+|+ +|++++.+         +.|++||+.
T Consensus        23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~   99 (723)
T 1xfd_A           23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIP   99 (723)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCC-EEEEEecCccceeecceeeEEEEECC
Confidence            58999997766 7899999999999988777764 332   378899999998 67777654         789999998


Q ss_pred             CCCceeEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec-CCC------------------eE
Q 008356           69 GRSPKVSWLK---QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAP------------------FS  126 (568)
Q Consensus        69 t~~~~v~~l~---~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h-~~~------------------It  126 (568)
                      +++.  ..+.   .|...+..++|+|||++|+.++. +.|++||+.+++....... ...                  +.
T Consensus       100 ~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A          100 HGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             SCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            8763  2333   34555899999999999999886 7899999998877665532 222                  37


Q ss_pred             EEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCCCceEEEeec----CCCC
Q 008356          127 SLAFIDDDWILTAGTSNG----------------------------------RVVFYDIRGKPQPLTVLRAC----SSSE  168 (568)
Q Consensus       127 sLafsPdg~~LasGs~DG----------------------------------~V~VWDlrt~~~~v~~l~~~----~h~~  168 (568)
                      +++|+|||++|++++.|+                                  .|++||+.+... ...+...    .+..
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSE
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccc
Confidence            899999999999987653                                  799999988742 2333311    1356


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .+..++|+|||++++.....        ...+..|++||+....
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~--------~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNR--------AQNVSILTLCDATTGV  291 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEET--------TSCEEEEEEEETTTCC
T ss_pred             eeEEEEEeCCCeEEEEEEcC--------CCCeEEEEEEeCCCCc
Confidence            78999999998877654221        1124578888876544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.64  E-value=1e-14  Score=146.82  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=117.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-   79 (568)
                      +++++++++++++.++.|++||+.+++.+..+..+....+..++|+|+++.+++++..++.|++||+.+++. ...+.. 
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~~~   84 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLS   84 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESC
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEEcc
Confidence            467888899999999999999999999888887543224667999999985666777899999999987763 333332 


Q ss_pred             C-----CCCeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCce---eeEeecCCCeEEEEEecCCCEEEE
Q 008356           80 H-----SAPTAGISFSSDDKIIASVGLD------------KKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        80 H-----~~~VtslafsPdg~~LaSgs~D------------GtV~IWDlrt~~~---v~~~~h~~~ItsLafsPdg~~Las  139 (568)
                      +     ...+.+++|+|++++|++++.+            +.|.+||+.+++.   +..+.+...+.+++|+|+|+ +++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~  163 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV  163 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE
Confidence            2     2337889999999999998865            8999999988543   34455666789999999999 555


Q ss_pred             EEcCCeEEEEECCCCC
Q 008356          140 GTSNGRVVFYDIRGKP  155 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~  155 (568)
                      ++  +.|.+||+.+.+
T Consensus       164 ~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          164 AG--PDIYKMDVKTGK  177 (349)
T ss_dssp             ES--SSEEEECTTTCC
T ss_pred             cc--CcEEEEeCCCCc
Confidence            54  349999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.63  E-value=7.6e-15  Score=147.85  Aligned_cols=193  Identities=9%  Similarity=0.081  Sum_probs=137.4

Q ss_pred             CccCCCCEEEEE-ECCCcEEEEECCCCceeEEeeCCC-----CCcEEEEEEccCCCeEEEEEeCC------------CeE
Q 008356            1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDD------------GTL   62 (568)
Q Consensus         1 afSpdG~~LasG-s~DG~V~VWDl~tg~~v~~l~~~h-----~~~Vs~Lafspdg~~lLaTgs~D------------GtV   62 (568)
                      +|+|+|++++++ ..++.|.+||+.+++.+..+...+     ...+..++|+|+++ +|+++..+            +.|
T Consensus        49 ~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i  127 (349)
T 1jmx_B           49 MMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRL  127 (349)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEE
T ss_pred             EECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeE
Confidence            478999876554 468999999999998887776433     22356789999998 56666644            899


Q ss_pred             EEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC------------------
Q 008356           63 HLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE------------------  122 (568)
Q Consensus        63 ~VWDl~t~~~~--v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~------------------  122 (568)
                      ++||+.+++..  +... .+...+.+++|+|+++ +++++.  .|++||+.+++.+..+...                  
T Consensus       128 ~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          128 EVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             EEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             EEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence            99999764311  2222 3444689999999999 555544  4999999988776555321                  


Q ss_pred             ---------------------------------------------------CCeEEEEEec-CCCEEEEEEcCCeEEEEE
Q 008356          123 ---------------------------------------------------APFSSLAFID-DDWILTAGTSNGRVVFYD  150 (568)
Q Consensus       123 ---------------------------------------------------~~ItsLafsP-dg~~LasGs~DG~V~VWD  150 (568)
                                                                         ..+..++|+| ++++|+++  ++.|.+||
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d  281 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD  281 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence                                                               1345677889 99999988  88999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      +++.+ ....+.   ....+.+++|+|++++|+.+            +.++.|++||+........
T Consensus       282 ~~~~~-~~~~~~---~~~~~~~~~~s~dg~~l~~~------------~~~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          282 LKQRK-LIKAAN---LDHTYYCVAFDKKGDKLYLG------------GTFNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             TTTTE-EEEEEE---CSSCCCEEEECSSSSCEEEE------------SBSSEEEEEETTTTEEEEE
T ss_pred             CccCe-EEEEEc---CCCCccceEECCCCCEEEEe------------cCCCeEEEEeccccceeee
Confidence            98863 333333   33457899999986655433            4479999999877654443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.60  E-value=1.2e-13  Score=140.72  Aligned_cols=197  Identities=9%  Similarity=0.098  Sum_probs=134.3

Q ss_pred             CccCCCCEEEEEE-CCCcEEEEECC-CCc--eeEEeeCC--------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356            1 MYNCKDEHLASIS-LSGDLILHNLA-SGA--KAAELKDP--------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (568)
Q Consensus         1 afSpdG~~LasGs-~DG~V~VWDl~-tg~--~v~~l~~~--------h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~   68 (568)
                      +|+|+|++|++++ .++.|.+|++. ++.  .+..+...        ....+.+++|+|+++ ++++...++.|++||+.
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEEC
Confidence            4789999999888 67999999995 333  23333321        112478899999998 88888889999999998


Q ss_pred             -CCCce-eEEecc-CCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCC--Ccee--eEee-cC------CCeEEEEEecC
Q 008356           69 -GRSPK-VSWLKQ-HSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGS--RRPS--SCIT-YE------APFSSLAFIDD  133 (568)
Q Consensus        69 -t~~~~-v~~l~~-H~~~VtslafsPdg~~LaS-gs~DGtV~IWDlrt--~~~v--~~~~-h~------~~ItsLafsPd  133 (568)
                       ++... ...+.. ....+..++|+|++++|++ ...++.|++||+..  ++..  ..+. ..      ..+..++|+|+
T Consensus       171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd  250 (347)
T 3hfq_A          171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD  250 (347)
T ss_dssp             TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred             CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence             33311 111222 2346889999999996665 45788999999874  4432  2221 11      34889999999


Q ss_pred             CCEEEE-EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          134 DWILTA-GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       134 g~~Las-Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |++|++ ...++.|.+||+..............+...+..++|+|+|++|+++           ...++.|.+|++.
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-----------~~~~~~v~v~~~d  316 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV-----------NQNTDNATLYARD  316 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE-----------ETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE-----------EcCCCcEEEEEEe
Confidence            998755 5568999999997432211222222455678999999987765444           3346788999553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.57  E-value=1.4e-13  Score=140.24  Aligned_cols=196  Identities=9%  Similarity=0.099  Sum_probs=131.5

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC-Cce
Q 008356            1 MYNCKDEHLASISL---SGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGR-SPK   73 (568)
Q Consensus         1 afSpdG~~LasGs~---DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~-~~~   73 (568)
                      +|+|||+ |++++.   ++.|++||+.+++.  +..+.. +...+..++|+|+++ +|++++ .++.|.+||+... ...
T Consensus        46 a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           46 ALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             EECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEE
T ss_pred             EEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCee
Confidence            4789999 655554   68999999976653  333332 344567799999998 555555 7899999999632 211


Q ss_pred             -eEEecc---------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeE--e--ecCCCeEEEEEecCCCEEE
Q 008356           74 -VSWLKQ---------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRPSSC--I--TYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        74 -v~~l~~---------H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr-t~~~v~~--~--~h~~~ItsLafsPdg~~La  138 (568)
                       +..+..         +...+.+++|+|+++++++...++.|++||+. +++....  +  .....+..++|+|+|++|+
T Consensus       123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence             222211         12348899999999966666678899999998 4543322  1  2344688999999999776


Q ss_pred             EE-EcCCeEEEEECCCCCCceE---EEeecCC----CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          139 AG-TSNGRVVFYDIRGKPQPLT---VLRACSS----SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       139 sG-s~DG~V~VWDlrt~~~~v~---~l~~~~h----~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +. ..++.|.+|+++.......   .+.....    ...+..++|+|+|++|+.           +...++.|.+||+..
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v-----------~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV-----------SNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE-----------EEETTTEEEEEEECG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE-----------EeCCCCEEEEEEECC
Confidence            64 5688999999885222222   2221111    145888999998776533           334478899999863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.56  E-value=7.5e-14  Score=164.76  Aligned_cols=174  Identities=9%  Similarity=0.151  Sum_probs=143.7

Q ss_pred             Ccc-CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCC-cEEEEEEccCCCeEEEEEeCCCeEE-EEECCCCCceeEEe
Q 008356            1 MYN-CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLH-LWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afS-pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~-~Vs~Lafspdg~~lLaTgs~DGtV~-VWDl~t~~~~v~~l   77 (568)
                      +|+ |||++|++++ ++.|++|++..++.. .+.. +.. .+..++|+ +++ .|+.++.++.+. +||+.++.  ...+
T Consensus       302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~-~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~--~~~l  374 (1045)
T 1k32_A          302 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPE-PLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGK--AEKF  374 (1045)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSC-CSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCC--EEEC
T ss_pred             eecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccC-CCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCC--ceEe
Confidence            378 9999999887 789999999877654 3544 444 78899999 887 677777788898 99998776  3445


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCC----------eE
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----------RV  146 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG----------~V  146 (568)
                      ..|...+.+++|+|++++|++++.++.|++||+.+++..... .|...+.+++|+|||++|++++.++          .|
T Consensus       375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence            578889999999999999999999999999999999887777 6888899999999999999887654          89


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ++||+.+..  ...+  ..|...+..++|+|+|++|+..
T Consensus       455 ~l~d~~~g~--~~~l--~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          455 HVYDMEGRK--IFAA--TTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             EEEETTTTE--EEEC--SCSSSBEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCc--EEEe--eCCCcccCCceEcCCCCEEEEE
Confidence            999998763  2333  3677889999999998877665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.55  E-value=4.6e-14  Score=158.10  Aligned_cols=181  Identities=13%  Similarity=0.139  Sum_probs=132.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCC-----CceeEEeeCCCCCc-------------EEEEEEccCCCeEEEEEe-----
Q 008356            1 MYNCKDEHLASISLSGDLILHNLAS-----GAKAAELKDPNEQV-------------LRVLDYSRNSRHLLVTAG-----   57 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~t-----g~~v~~l~~~h~~~-------------Vs~Lafspdg~~lLaTgs-----   57 (568)
                      +|+|||++|+++ .++.|++||+.+     ++.......+....             +.++.|+|+|+ +|++++     
T Consensus       127 ~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~  204 (706)
T 2z3z_A          127 DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSM  204 (706)
T ss_dssp             EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTT
T ss_pred             cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCC
Confidence            489999999985 689999999988     77654444322221             47899999998 566665     


Q ss_pred             ----------------------------CCCeEEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCC-----
Q 008356           58 ----------------------------DDGTLHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDK-----  103 (568)
Q Consensus        58 ----------------------------~DGtV~VWDl~t~~~~v~~l-~~H~~~VtslafsPdg~~LaSgs~DG-----  103 (568)
                                                  .+..|++||+.+++...... ..|...+.+++|+||+++|++++.++     
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  284 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC  284 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence                                        44679999998876321111 25667899999999999999988776     


Q ss_pred             eEEEEECCCC-ceeeEe--ecCC---CeEEEEEec--CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeE-EE
Q 008356          104 KLYTYDPGSR-RPSSCI--TYEA---PFSSLAFID--DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSS-LC  174 (568)
Q Consensus       104 tV~IWDlrt~-~~v~~~--~h~~---~ItsLafsP--dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~Vts-La  174 (568)
                      .|++||+.++ ......  .+..   .+..++|+|  +|++|+++..|+.++||+++........+.  .|...+.. ++
T Consensus       285 ~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~  362 (706)
T 2z3z_A          285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAG  362 (706)
T ss_dssp             EEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEE
T ss_pred             EEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeE
Confidence            8999999998 433333  2222   246789999  999999999999999998863323334443  56667776 79


Q ss_pred             EccCCCeEEEe
Q 008356          175 WQRAKPVFIDE  185 (568)
Q Consensus       175 fspdg~~Las~  185 (568)
                      |+|+++.|+..
T Consensus       363 ~spdg~~l~~~  373 (706)
T 2z3z_A          363 FDPKGTRLYFE  373 (706)
T ss_dssp             ECTTSSEEEEE
T ss_pred             EcCCCCEEEEE
Confidence            99987766544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.55  E-value=1e-12  Score=134.71  Aligned_cols=194  Identities=8%  Similarity=0.093  Sum_probs=131.3

Q ss_pred             CCCEEEEEE-CCCcEEEEECCCCceeEE----ee--C-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            5 KDEHLASIS-LSGDLILHNLASGAKAAE----LK--D-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         5 dG~~LasGs-~DG~V~VWDl~tg~~v~~----l~--~-------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      ++++|++++ .++.|.+|++.....+..    +.  +       .+...+.+++|+|+++.++++...++.|++|++...
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            678787776 578999999975432211    11  1       012235789999999865666666899999998754


Q ss_pred             Cc------e------eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceee--Eee----cCCCeEEEEEe
Q 008356           71 SP------K------VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS--CIT----YEAPFSSLAFI  131 (568)
Q Consensus        71 ~~------~------v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~--~~~----h~~~ItsLafs  131 (568)
                      ..      .      ......+...+..++|+|+++++++++ .++.|.+||+.+++...  .+.    +......++|+
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC
Confidence            32      1      122334456688999999999887777 68999999998775422  221    23457899999


Q ss_pred             cCCCEEEEEEcC--CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          132 DDDWILTAGTSN--GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       132 Pdg~~LasGs~D--G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |||++|+++..+  +.|.+|+++........+........+.+++|+|+|++|+.+           ...++.|.+|++.
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-----------~~~~~~v~v~~~d  336 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-----------CRDTNVIQIFERD  336 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-----------ETTTTEEEEEEEC
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-----------ECCCCCEEEEEEE
Confidence            999999777654  899999997321122222211224578899999987766544           2346788886543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.54  E-value=5.9e-14  Score=157.91  Aligned_cols=192  Identities=16%  Similarity=0.114  Sum_probs=137.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCc---------------EEEEEEccCCCeEEEEEeCCC-----
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQV---------------LRVLDYSRNSRHLLVTAGDDG-----   60 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~---------------Vs~Lafspdg~~lLaTgs~DG-----   60 (568)
                      +|+|||++|+.++ ++.|++||+.+++.......+....               +..+.|+|+|+ .|+.++.|+     
T Consensus       158 ~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~  235 (741)
T 2ecf_A          158 KLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPV  235 (741)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCE
T ss_pred             cCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCce
Confidence            4899999999887 4699999998877654443322211               36789999998 466665554     


Q ss_pred             ----------------------------eEEEEECCC-CCceeEEec-cCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 008356           61 ----------------------------TLHLWDTTG-RSPKVSWLK-QHSAPTAGISFSSDDKIIASVGL-----DKKL  105 (568)
Q Consensus        61 ----------------------------tV~VWDl~t-~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~-----DGtV  105 (568)
                                                  .|++||+.+ ++....... .|...+..++| ||+++|+++..     +..|
T Consensus       236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred             EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence                                        789999987 763222111 47788999999 99999987754     5689


Q ss_pred             EEEECCCCceeeEeec-C-C---CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE-EEccCC
Q 008356          106 YTYDPGSRRPSSCITY-E-A---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL-CWQRAK  179 (568)
Q Consensus       106 ~IWDlrt~~~v~~~~h-~-~---~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsL-afspdg  179 (568)
                      ++||+.+++....+.. . .   .+..++|+|||++++++..||.++||.++.... ...+.  .|...|..+ .|+|++
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~--~~~~~v~~~~~~s~dg  391 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT--HGNWSVDELLAVDEKA  391 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC--CSSSCEEEEEEEETTT
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee--ecceEEEeEeEEeCCC
Confidence            9999999987766632 2 2   456899999999999999999888887764333 34443  567778887 599987


Q ss_pred             CeEEEeccCCCCeEEEEecCCC--cEEcCCCC
Q 008356          180 PVFIDETTCKAETALLGGAVGD--SILMPDPL  209 (568)
Q Consensus       180 ~~Las~s~ssd~~~Lls~s~Dg--~V~VWDlr  209 (568)
                      +.|+..           +..++  .+++|++.
T Consensus       392 ~~l~~~-----------~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          392 GLAYFR-----------AGIESARESQIYAVP  412 (741)
T ss_dssp             TEEEEE-----------ECSSCTTCBEEEEEE
T ss_pred             CEEEEE-----------EeCCCCceEEEEEEE
Confidence            766443           22333  67777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.53  E-value=1.1e-13  Score=154.98  Aligned_cols=179  Identities=9%  Similarity=0.044  Sum_probs=129.1

Q ss_pred             CccCCCCEEEEEECC---------CcEEEEECCCCceeEEeeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 008356            1 MYNCKDEHLASISLS---------GDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpdG~~LasGs~D---------G~V~VWDl~tg~~v~~l~~--~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t   69 (568)
                      +|+|||++|++++.+         +.|++||+.+++. ..+..  .+...+..++|+|+|+ .|+.++. +.|++||+.+
T Consensus        67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~  143 (723)
T 1xfd_A           67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVG  143 (723)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSS
T ss_pred             EECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCC
Confidence            489999999999774         7888999988875 33432  1233477799999998 5666665 7999999988


Q ss_pred             CCceeEEeccCCCC------------------eEEEEEcCCCCEEEEEeCCC----------------------------
Q 008356           70 RSPKVSWLKQHSAP------------------TAGISFSSDDKIIASVGLDK----------------------------  103 (568)
Q Consensus        70 ~~~~v~~l~~H~~~------------------VtslafsPdg~~LaSgs~DG----------------------------  103 (568)
                      ++. ......+...                  +.+++|+||+++|++++.|+                            
T Consensus       144 g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  222 (723)
T 1xfd_A          144 KQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG  222 (723)
T ss_dssp             SCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred             Cce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence            764 3333333332                  37899999999999987553                            


Q ss_pred             ------eEEEEECCCCceeeEee-c------CCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCCCCceEEEeecCC
Q 008356          104 ------KLYTYDPGSRRPSSCIT-Y------EAPFSSLAFIDDDWILTAGTSN----GRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus       104 ------tV~IWDlrt~~~v~~~~-h------~~~ItsLafsPdg~~LasGs~D----G~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                            .|++||+.+++....+. +      ...+..++|+|||++|++...+    ..|++||+.++. ....+.. .+
T Consensus       223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~-~~  300 (723)
T 1xfd_A          223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHED-ES  300 (723)
T ss_dssp             SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEE-EC
T ss_pred             CCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEe-cc
Confidence                  79999999887544442 2      4578999999999988776543    579999998874 3333321 23


Q ss_pred             CCCee----EEEEccCCCeEEEe
Q 008356          167 SEAVS----SLCWQRAKPVFIDE  185 (568)
Q Consensus       167 ~~~Vt----sLafspdg~~Las~  185 (568)
                      ...+.    .++|+|+|+.|+..
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEE
T ss_pred             CCEEeccCCCceEcCCCCeEEEE
Confidence            34443    78999998876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.53  E-value=7.5e-14  Score=164.75  Aligned_cols=198  Identities=11%  Similarity=0.068  Sum_probs=150.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC----------CCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP----------NEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~----------h~~~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t   69 (568)
                      +|+|||++|+.+ .++.|++||+... .+..+..+          +...+..++|+ |+|+ .|+.++ ++.|++|++.+
T Consensus       251 ~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          251 HLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTS
T ss_pred             eEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCC
Confidence            478999999887 4899999998444 34355431          12357789999 9998 455555 78999999987


Q ss_pred             CCceeEEeccCCC-CeEEEEEcCCCCEEEEEeCCCeEE-EEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEE
Q 008356           70 RSPKVSWLKQHSA-PTAGISFSSDDKIIASVGLDKKLY-TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVV  147 (568)
Q Consensus        70 ~~~~v~~l~~H~~-~VtslafsPdg~~LaSgs~DGtV~-IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~  147 (568)
                      +.  ...+..|.. .+.+++|+ +++.|++++.+..|. +||+.+++......+...+..++|+|||++|++++.++.|+
T Consensus       327 ~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~  403 (1045)
T 1k32_A          327 TY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM  403 (1045)
T ss_dssp             SB--EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred             Cc--eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence            66  445677777 89999999 999999999988899 99998877655556778899999999999999999999999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +||+.++. ......  .|...+.+++|+|+|++|+.+....+...  ....++.|++||+..
T Consensus       404 ~~d~~tg~-~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~--~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          404 TVDLETGK-PTVIER--SREAMITDFTISDNSRFIAYGFPLKHGET--DGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEETTTCC-EEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTT--CSCCEEEEEEEETTT
T ss_pred             EEECCCCc-eEEecc--CCCCCccceEECCCCCeEEEEecCccccc--cCCCCCeEEEEECCC
Confidence            99998874 334443  68888999999999998876632110000  001235788888764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.52  E-value=1.8e-12  Score=132.90  Aligned_cols=196  Identities=8%  Similarity=0.063  Sum_probs=130.9

Q ss_pred             CccCCCCEEEEEECC----CcEEEEECCC--Cce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            1 MYNCKDEHLASISLS----GDLILHNLAS--GAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         1 afSpdG~~LasGs~D----G~V~VWDl~t--g~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +|+|||++|++++.+    +.|.+|++..  ++.  +..+.. +......+++  +++.++++...++.|.+|++.....
T Consensus        56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~  132 (361)
T 3scy_A           56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA  132 (361)
T ss_dssp             EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred             EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence            489999999999876    7999998865  443  233332 3344556777  7774455555789999999965431


Q ss_pred             e--e-E--Eec--------cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc-------e-------eeEeecCCC
Q 008356           73 K--V-S--WLK--------QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRR-------P-------SSCITYEAP  124 (568)
Q Consensus        73 ~--v-~--~l~--------~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~-------~-------v~~~~h~~~  124 (568)
                      .  . .  ...        .+...+.+++|+|++++|++++ .++.|++|++....       .       .........
T Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  212 (361)
T 3scy_A          133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG  212 (361)
T ss_dssp             BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC
T ss_pred             CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC
Confidence            1  1 1  111        1233468899999999776655 58899999887543       1       112245667


Q ss_pred             eEEEEEecCCCEEEEEE-cCCeEEEEECCCCCC-ceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecC-C
Q 008356          125 FSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQ-PLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV-G  200 (568)
Q Consensus       125 ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~-~v~~l~-~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~-D  200 (568)
                      +..++|+|+|++|+++. .++.|.+||+++... .+..+. ...+...+..++|+|+|++|+..           ... +
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~-----------~~~~~  281 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS-----------NRLKA  281 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE-----------ECSSS
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE-----------CCCCC
Confidence            88999999999888877 689999999985421 111122 12334557899999988766443           233 5


Q ss_pred             CcEEcCCCCC
Q 008356          201 DSILMPDPLP  210 (568)
Q Consensus       201 g~V~VWDlr~  210 (568)
                      +.|.+|++.+
T Consensus       282 ~~i~v~~~~~  291 (361)
T 3scy_A          282 DGVAIFKVDE  291 (361)
T ss_dssp             CEEEEEEECT
T ss_pred             CEEEEEEEcC
Confidence            7899998863

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.51  E-value=4.8e-13  Score=149.84  Aligned_cols=196  Identities=15%  Similarity=0.127  Sum_probs=138.0

Q ss_pred             CccCCCCEEEEEE---------------------------------CCCcEEEEECCCCceeEEeeC-CCCCcEEEEEEc
Q 008356            1 MYNCKDEHLASIS---------------------------------LSGDLILHNLASGAKAAELKD-PNEQVLRVLDYS   46 (568)
Q Consensus         1 afSpdG~~LasGs---------------------------------~DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafs   46 (568)
                      +|+|||++|++++                                 .+..|++||+.+++....... .+...+..++|+
T Consensus       187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  266 (706)
T 2z3z_A          187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS  266 (706)
T ss_dssp             EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence            3899999999987                                 446799999988876544332 356678999999


Q ss_pred             cCCCeEEEEEeCCC-----eEEEEECCCCCceeEEec-cCCC---CeEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCc
Q 008356           47 RNSRHLLVTAGDDG-----TLHLWDTTGRSPKVSWLK-QHSA---PTAGISFSS--DDKIIASVGLDKKLYTYDPG-SRR  114 (568)
Q Consensus        47 pdg~~lLaTgs~DG-----tV~VWDl~t~~~~v~~l~-~H~~---~VtslafsP--dg~~LaSgs~DGtV~IWDlr-t~~  114 (568)
                      |+++ .|++++.|+     .|++||+.+++....... .+..   .+.++.|+|  ++++|+++..|+.+++|++. ++.
T Consensus       267 pdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~  345 (706)
T 2z3z_A          267 PDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR  345 (706)
T ss_dssp             TTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred             CCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence            9998 566666554     899999988732222221 2222   346789999  99999999999988888875 455


Q ss_pred             eeeEe-ecCCCeEE-EEEecCCCEEEEEEcC-C----eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356          115 PSSCI-TYEAPFSS-LAFIDDDWILTAGTSN-G----RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       115 ~v~~~-~h~~~Its-LafsPdg~~LasGs~D-G----~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~  187 (568)
                      .+..+ .+...+.. ++|+|+++.|+..+.+ +    .|..||+.+..  ...+   .|...+.+++|+|+|++++....
T Consensus       346 ~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l---~~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          346 LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDL---TPESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEES---CCSSSEEEEEECTTSSEEEEEEE
T ss_pred             EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceec---cCCCceEEEEECCCCCEEEEEec
Confidence            55555 45666766 8999999988766544 3    67777777653  2333   36677999999999887765421


Q ss_pred             CCCCeEEEEecCCCcEEcCCCCC
Q 008356          188 CKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       188 ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ..        .....|++||+..
T Consensus       421 ~~--------~~p~~i~l~d~~~  435 (706)
T 2z3z_A          421 SP--------TVPRKVTVTNIGK  435 (706)
T ss_dssp             CS--------SCSCEEEEEESSS
T ss_pred             CC--------CCCcEEEEEECCC
Confidence            10        1125688888754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.51  E-value=2.8e-13  Score=148.77  Aligned_cols=189  Identities=10%  Similarity=0.036  Sum_probs=133.9

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC---CCeEEEEECCC--CCcee
Q 008356            1 MYNCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGTLHLWDTTG--RSPKV   74 (568)
Q Consensus         1 afSpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~---DGtV~VWDl~t--~~~~v   74 (568)
                      +|+|||++||.++. ||+++||++..++ ...+..++...+..+.|+|+ + +++++..   +...+||.++.  .....
T Consensus        28 ~~~~DG~~la~~s~~~g~~~lw~~~~g~-~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~  104 (582)
T 3o4h_A           28 QGVVDGDKLLVVGFSEGSVNAYLYDGGE-TVKLNREPINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQ  104 (582)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEETTE-EEECCSSCCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred             ecCCCCCeEEEEEccCCceeEEEEcCCC-cEeeecccccccccccCCCC-e-EEEEeccCCCCcceEEEEEeccCCCccc
Confidence            47899999999887 9999999985554 45555545467888999998 4 7887775   45556655532  22112


Q ss_pred             EEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC----CeEEEE
Q 008356           75 SWLKQHSAPTAGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN----GRVVFY  149 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~-LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D----G~V~VW  149 (568)
                       .+..+. .+...+|+|+++. +++...++.+.+||+.+++......+..  .+++|+|||++|+.++.+    +.|++|
T Consensus       105 -~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~  180 (582)
T 3o4h_A          105 -RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTS  180 (582)
T ss_dssp             -ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             -cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEE
Confidence             333332 3556788887753 3344444556699999988766665444  889999999999988877    789999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC--cEEcCCCCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD--SILMPDPLPSV  212 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg--~V~VWDlr~~~  212 (568)
                      |+.++..  ..+.  .|.+.+..++|+|||++|+..            ..++  .|++||+....
T Consensus       181 d~~~g~~--~~l~--~~~~~~~~~~~SpDG~~l~~~------------~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          181 NLSSGGL--RVFD--SGEGSFSSASISPGMKVTAGL------------ETAREARLVTVDPRDGS  229 (582)
T ss_dssp             ETTTCCC--EEEC--CSSCEEEEEEECTTSCEEEEE------------ECSSCEEEEEECTTTCC
T ss_pred             cCCCCCc--eEee--cCCCccccceECCCCCEEEEc------------cCCCeeEEEEEcCCCCc
Confidence            9987742  3443  678889999999998887633            2355  78888876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.50  E-value=1.7e-12  Score=133.55  Aligned_cols=198  Identities=12%  Similarity=0.049  Sum_probs=140.6

Q ss_pred             CccCCCCEEEEEEC-CC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISL-SG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~-DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+|||++|+.++. +|  .|.+||+.+++....... +...+..+.|+|+++ .|+.+..++.|++||+.+++. ....
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~-~~~~  118 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEE-NVVY  118 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCCE-EEEE
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCcc-eeee
Confidence            48999999999887 66  488889988876654443 444443568999998 688888889999999998773 3334


Q ss_pred             ccCCCCeEEEE--EcCCCCEEEEE----------------------eCCCeEEEEECCCCceeeEeecCCCeEEEEEec-
Q 008356           78 KQHSAPTAGIS--FSSDDKIIASV----------------------GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-  132 (568)
Q Consensus        78 ~~H~~~Vtsla--fsPdg~~LaSg----------------------s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-  132 (568)
                      ..+...+....  +++++++++..                      ..+..|++||+.+++......+...+..++|+| 
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence            44555454444  47899988743                      244689999999998777777788899999999 


Q ss_pred             CCCEEEEEEcC------CeEEEEECCCCCCceEEEeecCCC--CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          133 DDWILTAGTSN------GRVVFYDIRGKPQPLTVLRACSSS--EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       133 dg~~LasGs~D------G~V~VWDlrt~~~~v~~l~~~~h~--~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      +|+.|+....+      ..|.++|+.+..  ...+.  .+.  ..+..++|+|+|+.|+..+...+       ..+..|+
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~-------~~~~~l~  267 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVK--THAEGESCTHEFWVPDGSALVYVSYLKG-------SPDRFIY  267 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESC--CCCTTEEEEEEEECTTSSCEEEEEEETT-------CCCEEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEee--eCCCCcccccceECCCCCEEEEEecCCC-------CCcceEE
Confidence            99999887763      378888887653  23333  233  35788999999887755422110       0122489


Q ss_pred             cCCCCCCC
Q 008356          205 MPDPLPSV  212 (568)
Q Consensus       205 VWDlr~~~  212 (568)
                      +||+....
T Consensus       268 ~~d~~~g~  275 (388)
T 3pe7_A          268 SADPETLE  275 (388)
T ss_dssp             EECTTTCC
T ss_pred             EEecCCCc
Confidence            99986543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.50  E-value=1.3e-12  Score=135.40  Aligned_cols=202  Identities=12%  Similarity=0.075  Sum_probs=135.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCe-EEEEEe-------------CCCeEEEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRH-LLVTAG-------------DDGTLHLW   65 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~-lLaTgs-------------~DGtV~VW   65 (568)
                      +|+|+|++|++++.+ .|.+|++. +++..........+....++|+|+++. +++++.             .+|.+.+|
T Consensus        46 a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~  124 (365)
T 1jof_A           46 TFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF  124 (365)
T ss_dssp             EECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred             EECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence            479999999999888 99999997 776654332111122345889999974 244543             68999999


Q ss_pred             ECCC-CCceeEEec----cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCceee--Eee---cCCCeEEEEEecC
Q 008356           66 DTTG-RSPKVSWLK----QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG-SRRPSS--CIT---YEAPFSSLAFIDD  133 (568)
Q Consensus        66 Dl~t-~~~~v~~l~----~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlr-t~~~v~--~~~---h~~~ItsLafsPd  133 (568)
                      ++.. ++ ....+.    .+...+.+++|+|++++|+++. .++.|++||+. +++...  .+.   +...+..++|+|+
T Consensus       125 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd  203 (365)
T 1jof_A          125 SVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT  203 (365)
T ss_dssp             EECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred             ccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC
Confidence            9974 33 222222    3566799999999999888776 46799999998 676432  232   3567999999999


Q ss_pred             CCEEEEEEc-CCeEEEEECCC--CCCc--eEEEeec-----CCCC------CeeEEE-EccCCCeEEEeccCCCCeEEEE
Q 008356          134 DWILTAGTS-NGRVVFYDIRG--KPQP--LTVLRAC-----SSSE------AVSSLC-WQRAKPVFIDETTCKAETALLG  196 (568)
Q Consensus       134 g~~LasGs~-DG~V~VWDlrt--~~~~--v~~l~~~-----~h~~------~VtsLa-fspdg~~Las~s~ssd~~~Lls  196 (568)
                      |++|+++.. ++.|.+|+++.  +...  ...+...     +|..      .+..++ |+|+|++|+......+.     
T Consensus       204 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-----  278 (365)
T 1jof_A          204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-----  278 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-----
T ss_pred             CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC-----
Confidence            999988775 78999998763  3211  1122211     1122      588999 99998876544110000     


Q ss_pred             ecCCCcEEcCCCCC
Q 008356          197 GAVGDSILMPDPLP  210 (568)
Q Consensus       197 ~s~Dg~V~VWDlr~  210 (568)
                       ...+.|.+||+..
T Consensus       279 -~~~~~i~v~~~~~  291 (365)
T 1jof_A          279 -ELQGYIAGFKLRD  291 (365)
T ss_dssp             -TSCCEEEEEEECT
T ss_pred             -CCCCeEEEEEECC
Confidence             0013899998863

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.50  E-value=1.7e-13  Score=155.93  Aligned_cols=179  Identities=11%  Similarity=0.123  Sum_probs=131.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCC----cEEEEEEccCCCeEEEEEeCC---------CeEEEEEC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ----VLRVLDYSRNSRHLLVTAGDD---------GTLHLWDT   67 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~----~Vs~Lafspdg~~lLaTgs~D---------GtV~VWDl   67 (568)
                      +|+|||++|+++  ||.|++||+.+++....+.++...    ....+.|+|||+ .|+.++.+         +.+++||+
T Consensus        23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC-EEEEEECCeeeEEEccceEEEEEEC
Confidence            488999988886  999999999999987777764422    223478999998 56666665         56789999


Q ss_pred             CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee--cCCCe-----------------EEE
Q 008356           68 TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPF-----------------SSL  128 (568)
Q Consensus        68 ~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--h~~~I-----------------tsL  128 (568)
                      .+++  ...+..|...+..++|+|||+.|+.+. |+.|++||+.+++..+...  +...+                 ..+
T Consensus       100 ~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A          100 NKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             TTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence            9886  445777888999999999999999885 6899999998887654331  22222                 358


Q ss_pred             EEecCCCEEEEEEcCC------------------------------------eEEEEECCC---CCC-ceEEEeec----
Q 008356          129 AFIDDDWILTAGTSNG------------------------------------RVVFYDIRG---KPQ-PLTVLRAC----  164 (568)
Q Consensus       129 afsPdg~~LasGs~DG------------------------------------~V~VWDlrt---~~~-~v~~l~~~----  164 (568)
                      .|+|||++|+.+..|.                                    .|++||+.+   +.. ....+...    
T Consensus       177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~  256 (740)
T 4a5s_A          177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML  256 (740)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHH
T ss_pred             EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCC
Confidence            9999999999875321                                    478899887   531 11222211    


Q ss_pred             CCCCCeeEEEEccCCCeEEEe
Q 008356          165 SSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       165 ~h~~~VtsLafspdg~~Las~  185 (568)
                      +|...+..++|+|+|+.++..
T Consensus       257 ~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          257 IGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             TSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEEEeCCCeEEEEE
Confidence            267789999999998866544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.50  E-value=2.4e-12  Score=131.69  Aligned_cols=203  Identities=11%  Similarity=0.099  Sum_probs=150.7

Q ss_pred             CccCCCCEEEEEECC------------------------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE
Q 008356            1 MYNCKDEHLASISLS------------------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA   56 (568)
Q Consensus         1 afSpdG~~LasGs~D------------------------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg   56 (568)
                      +++++|+++++...+                        +.|.+||..+++.+..+...+-.....|+++++++ ++++.
T Consensus        30 a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d  108 (329)
T 3fvz_A           30 ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTD  108 (329)
T ss_dssp             EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEE
T ss_pred             EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEE
Confidence            468899988887766                        47999999889987766544445678899999998 88888


Q ss_pred             eCCCeEEEEECCCCCceeEEe---------ccCCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEECCCCceeeEeec-C--
Q 008356           57 GDDGTLHLWDTTGRSPKVSWL---------KQHSAPTAGISFSS-DDKIIASVG-LDKKLYTYDPGSRRPSSCITY-E--  122 (568)
Q Consensus        57 s~DGtV~VWDl~t~~~~v~~l---------~~H~~~VtslafsP-dg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h-~--  122 (568)
                      ..++.|++||..+....+..+         ..+....+.++++| +++++++.+ .++.|++|| .+++.+..+.. .  
T Consensus       109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~  187 (329)
T 3fvz_A          109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG  187 (329)
T ss_dssp             TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS
T ss_pred             CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC
Confidence            889999999987653223333         34555789999999 788888886 699999999 56666666631 1  


Q ss_pred             --------CCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 008356          123 --------APFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (568)
Q Consensus       123 --------~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~  193 (568)
                              .....++++|+ ++++++...++.|++||.+++ +.+..+....+...+..++|+| +..++..     +..
T Consensus       188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~-----g~~  260 (329)
T 3fvz_A          188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIP-GFLFAVN-----GKP  260 (329)
T ss_dssp             SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEET-TEEEEEE-----CCC
T ss_pred             CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecC-CEEEEeC-----CCE
Confidence                    23889999998 777777778999999999855 3445554445677899999999 4333332     234


Q ss_pred             EEEecCCCcEEcCCCCCCC
Q 008356          194 LLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       194 Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +++...+..|++||+....
T Consensus       261 ~v~~~~~~~v~~~~~~~g~  279 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGE  279 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCC
T ss_pred             EeccCCCcEEEEEEcCCCe
Confidence            4555557789999976544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.49  E-value=1.9e-13  Score=150.20  Aligned_cols=184  Identities=16%  Similarity=0.135  Sum_probs=133.7

Q ss_pred             CccCCCCEEEEEEC---CCcEEEEECCC---CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            1 MYNCKDEHLASISL---SGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpdG~~LasGs~---DG~V~VWDl~t---g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      +|+|| ++++++..   +....||.+..   +... .+..  ...+...+|+++++.++++...++.+.+||+.+++  .
T Consensus        71 ~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~  144 (582)
T 3o4h_A           71 HYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--L  144 (582)
T ss_dssp             CTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--E
T ss_pred             cCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc--E
Confidence            58888 77777765   45556655432   3322 4432  22344678999987666666666666699998776  2


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC--eEEE
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG--RVVF  148 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~D----GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG--~V~V  148 (568)
                      ..+..+..  .+++|+|||++|++++.+    +.|++||+.+++......+...+..++|+|||++|+++..++  .|++
T Consensus       145 ~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          145 RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVT  222 (582)
T ss_dssp             EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred             EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence            33333333  889999999999988877    789999999988776667888899999999999999888888  8999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEE--------EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLC--------WQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLa--------fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      ||+.++.. . .+.  .|...+..++        |+|+|.            +++++..|+.+++|++
T Consensus       223 ~d~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~spdg~------------~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          223 VDPRDGSV-E-DLE--LPSKDFSSYRPTAITWLGYLPDGR------------LAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTTCCE-E-ECC--CSCSHHHHHCCSEEEEEEECTTSC------------EEEEEEETTEEEEEET
T ss_pred             EcCCCCcE-E-Ecc--CCCcChhhhhhccccceeEcCCCc------------EEEEEEcCCcEEEEEE
Confidence            99998742 2 333  5666777777        999753            3444556899999998

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.49  E-value=2.2e-12  Score=133.57  Aligned_cols=198  Identities=7%  Similarity=0.020  Sum_probs=132.7

Q ss_pred             CccCCCCE--EEEEE-------------CCCcEEEEECC-CCceeEEeeC---CCCCcEEEEEEccCCCeEEEEEe-CCC
Q 008356            1 MYNCKDEH--LASIS-------------LSGDLILHNLA-SGAKAAELKD---PNEQVLRVLDYSRNSRHLLVTAG-DDG   60 (568)
Q Consensus         1 afSpdG~~--LasGs-------------~DG~V~VWDl~-tg~~v~~l~~---~h~~~Vs~Lafspdg~~lLaTgs-~DG   60 (568)
                      +|+|+|++  ++++.             .+|.+.+|++. +++....+..   .+...+.+++|+|+|+ +|+++. .++
T Consensus        89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~  167 (365)
T 1jof_A           89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTAN  167 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTT
T ss_pred             EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCC
Confidence            58899995  44542             68999999997 4665443331   2446788999999998 455554 478


Q ss_pred             eEEEEECC-CCCce-eEEec--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC--CCceee---Eee---c-----C
Q 008356           61 TLHLWDTT-GRSPK-VSWLK--QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPG--SRRPSS---CIT---Y-----E  122 (568)
Q Consensus        61 tV~VWDl~-t~~~~-v~~l~--~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlr--t~~~v~---~~~---h-----~  122 (568)
                      .|++||+. +++.. +..+.  .|...+..++|+|++++|++++. ++.|.+|++.  +++...   .+.   .     .
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence            99999998 55422 22232  24667999999999999888775 7899999765  455421   221   1     1


Q ss_pred             C------CeEEEE-EecCCCEEEEEEcC-C-----eEEEEECCCCCCceEEEe-ecCCCCCeeEEEEcc---CCCeEEEe
Q 008356          123 A------PFSSLA-FIDDDWILTAGTSN-G-----RVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQR---AKPVFIDE  185 (568)
Q Consensus       123 ~------~ItsLa-fsPdg~~LasGs~D-G-----~V~VWDlrt~~~~v~~l~-~~~h~~~VtsLafsp---dg~~Las~  185 (568)
                      .      .+..++ |+|||++|+++..+ +     .|.+|+++...+...... ...+...+..++|+|   +|++|+.+
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            1      478999 99999998877643 2     899999963223222111 112445567889999   67665544


Q ss_pred             ccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          186 TTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       186 s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                                 ...++.|.+|++..
T Consensus       328 -----------~~~~~~v~v~~~~~  341 (365)
T 1jof_A          328 -----------DDQEGWLEIYRWKD  341 (365)
T ss_dssp             -----------CSSSCEEEEEEEET
T ss_pred             -----------EcCCCeEEEEEEch
Confidence                       22357889998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.48  E-value=9.3e-12  Score=123.33  Aligned_cols=189  Identities=11%  Similarity=0.098  Sum_probs=136.6

Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--cC
Q 008356            4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--QH   80 (568)
Q Consensus         4 pdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~--~H   80 (568)
                      ++++++++... ++.|++|| .+++.+..+...+...+..++++++++ ++++...++.|++||.....  +..+.  .+
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~~~~~  162 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFGCSKH  162 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEECTTT
T ss_pred             CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCE--EEEeCCCCc
Confidence            45555554433 78999999 577777777554556678999999997 77777788999999976443  33332  45


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec---CCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---EAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h---~~~ItsLafsPdg~~LasGs~DG-~V~VWDlrt~~~  156 (568)
                      ...+.+++++++++++++...++.|++||.. ++.+..+..   ...+..++++++|+++++...++ .|.+||....  
T Consensus       163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~--  239 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--  239 (286)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC--
T ss_pred             cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC--
Confidence            5678999999999988888889999999974 455555532   25789999999999888887776 9999996543  


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .+..+........+.+++++++|+            ++++ +.|+.|++|++....
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~------------l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGS------------VVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTE------------EEEE-ETTTEEEEEECSCCC
T ss_pred             EEEEEcccCCCCcceeEEECCCCc------------EEEE-CCCCeEEEEEccccc
Confidence            344444333334577899988643            4444 348999999876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.7e-13  Score=154.07  Aligned_cols=178  Identities=16%  Similarity=0.159  Sum_probs=128.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCC---cEEEEEEccCCCeEEEEEeC---------CCeEEEEECC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ---VLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTT   68 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~---~Vs~Lafspdg~~lLaTgs~---------DGtV~VWDl~   68 (568)
                      +|+|+|++++ .+.|+.|++||+.+++....+.. +..   .+.+++|+|||+ +|+.++.         ++.|++||+.
T Consensus        22 ~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           22 NWISGQEYLH-QSADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             EESSSSEEEE-ECTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECC
Confidence            4889996554 55799999999999887766653 222   377899999998 5666655         7899999998


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCe-----------------EEEE
Q 008356           69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPF-----------------SSLA  129 (568)
Q Consensus        69 t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~I-----------------tsLa  129 (568)
                      +++..  ........+..++|+|||+.|+.+. ++.|++||+.+++.....  .+...|                 .+++
T Consensus        99 ~g~~~--~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           99 NGEFV--RGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTEEC--CSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCccc--cceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            87631  0011235689999999999999886 789999999988765443  222212                 4899


Q ss_pred             EecCCCEEEEEEcCC----------------------------------eEEEEECCCCCCc-eEEEe----ecCCCCCe
Q 008356          130 FIDDDWILTAGTSNG----------------------------------RVVFYDIRGKPQP-LTVLR----ACSSSEAV  170 (568)
Q Consensus       130 fsPdg~~LasGs~DG----------------------------------~V~VWDlrt~~~~-v~~l~----~~~h~~~V  170 (568)
                      |+|||++|++++.|.                                  .|++||+.+.... ...+.    ..+|...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            999999999987652                                  7889999876321 01111    12577889


Q ss_pred             eEEEEccCCCeEEE
Q 008356          171 SSLCWQRAKPVFID  184 (568)
Q Consensus       171 tsLafspdg~~Las  184 (568)
                      ..++|+||+++++.
T Consensus       256 ~~~~~SpD~~~~~~  269 (719)
T 1z68_A          256 SWLTWVTDERVCLQ  269 (719)
T ss_dssp             EEEEESSSSEEEEE
T ss_pred             EEeEEeCCCeEEEE
Confidence            99999998765554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=155.35  Aligned_cols=179  Identities=11%  Similarity=0.081  Sum_probs=124.5

Q ss_pred             CccCCCCEEEEEEC---------CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356            1 MYNCKDEHLASISL---------SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         1 afSpdG~~LasGs~---------DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      +|+|||++|++++.         ++.|++||+.+++.+....  ....+..++|+|+|+ .|+.+. |+.|++||+.+++
T Consensus        66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~--l~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A           66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE--LPRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSC
T ss_pred             EECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee--cCcccccceECCCCC-EEEEEE-CCeEEEEeCCCCC
Confidence            48999999998876         6899999998887631111  124577799999998 465554 7899999998776


Q ss_pred             ceeEEeccCCCCe-----------------EEEEEcCCCCEEEEEeCCC-------------------------------
Q 008356           72 PKVSWLKQHSAPT-----------------AGISFSSDDKIIASVGLDK-------------------------------  103 (568)
Q Consensus        72 ~~v~~l~~H~~~V-----------------tslafsPdg~~LaSgs~DG-------------------------------  103 (568)
                      .......++...|                 .+++|+|||++|++++.|.                               
T Consensus       142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~  221 (719)
T 1z68_A          142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN  221 (719)
T ss_dssp             CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred             cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence            4322222333322                 4899999999999987652                               


Q ss_pred             ---eEEEEECCCCcee---eE-----e-ecCCCeEEEEEecCCCEEEEEEcC----CeEEEEE----CCCCCCceEEEe-
Q 008356          104 ---KLYTYDPGSRRPS---SC-----I-TYEAPFSSLAFIDDDWILTAGTSN----GRVVFYD----IRGKPQPLTVLR-  162 (568)
Q Consensus       104 ---tV~IWDlrt~~~v---~~-----~-~h~~~ItsLafsPdg~~LasGs~D----G~V~VWD----lrt~~~~v~~l~-  162 (568)
                         .|++||+.+++..   ..     + .+...+..++|+||++++++....    ..|.+||    +.++.. ..++. 
T Consensus       222 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~  300 (719)
T 1z68_A          222 PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEH  300 (719)
T ss_dssp             CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEE
T ss_pred             CeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEec
Confidence               7899999987653   21     1 366678999999998877775433    2488899    665422 11110 


Q ss_pred             -ecCCCCCee-----EEEEccCCCeEEE
Q 008356          163 -ACSSSEAVS-----SLCWQRAKPVFID  184 (568)
Q Consensus       163 -~~~h~~~Vt-----sLafspdg~~Las  184 (568)
                       ...|...+.     .+.|+|+|+.++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          301 IEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             ccccCCceEccccCCccEECCCCCeEEE
Confidence             025666676     8899999876544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.38  E-value=5.5e-12  Score=143.36  Aligned_cols=178  Identities=7%  Similarity=-0.016  Sum_probs=124.7

Q ss_pred             ccCCCCEEEEEECC---------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            2 YNCKDEHLASISLS---------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         2 fSpdG~~LasGs~D---------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      |||||++|+.+..+         +.+.+||+.+++... +.. +...+..++|+|+|+. |+.+ .|+.|++||+.++..
T Consensus        69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~-~~~~~~~~~~SPdG~~-la~~-~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EER-IPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPS  144 (740)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSC-CCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCC
T ss_pred             ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-ccc-CCCcceeeEECCCCCE-EEEE-ECCeEEEEECCCCce
Confidence            69999999998876         667899999887553 443 4566888999999984 5554 468999999987764


Q ss_pred             eeEEeccCCCCe-----------------EEEEEcCCCCEEEEEeCCC--------------------------------
Q 008356           73 KVSWLKQHSAPT-----------------AGISFSSDDKIIASVGLDK--------------------------------  103 (568)
Q Consensus        73 ~v~~l~~H~~~V-----------------tslafsPdg~~LaSgs~DG--------------------------------  103 (568)
                      ......++...+                 ..+.|+|||++|+.+..|.                                
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence            322223333323                 3589999999999875321                                


Q ss_pred             ----eEEEEECCC---C---ceeeEee------cCCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCCCC-----ce
Q 008356          104 ----KLYTYDPGS---R---RPSSCIT------YEAPFSSLAFIDDDWILTAGTSN----GRVVFYDIRGKPQ-----PL  158 (568)
Q Consensus       104 ----tV~IWDlrt---~---~~v~~~~------h~~~ItsLafsPdg~~LasGs~D----G~V~VWDlrt~~~-----~v  158 (568)
                          +|++||+.+   +   +......      +...+..++|+|||++++.....    ..|.+||+.++..     ..
T Consensus       225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~  304 (740)
T 4a5s_A          225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA  304 (740)
T ss_dssp             CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred             CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence                588899998   7   3333322      56678999999999977765432    3699999988741     11


Q ss_pred             EEEeecCCCCCee-----EEEEccCCCeEE
Q 008356          159 TVLRACSSSEAVS-----SLCWQRAKPVFI  183 (568)
Q Consensus       159 ~~l~~~~h~~~Vt-----sLafspdg~~La  183 (568)
                      ..+....|...|.     .+.|+|||+.++
T Consensus       305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             GCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             EEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence            1121124665554     789999998766

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.35  E-value=1.5e-10  Score=114.67  Aligned_cols=188  Identities=9%  Similarity=0.103  Sum_probs=133.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-----CCCCcEEEEEEc-cCCCeEEEEEeC-CCeEEEEECCCCCcee
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-----PNEQVLRVLDYS-RNSRHLLVTAGD-DGTLHLWDTTGRSPKV   74 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-----~h~~~Vs~Lafs-pdg~~lLaTgs~-DGtV~VWDl~t~~~~v   74 (568)
                      ++++|+++++...++.|++||.. ++.+..+..     .+...+..+++. +++. ++++... ++.|++||... .. +
T Consensus        37 ~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~g-~~-~  112 (286)
T 1q7f_A           37 VNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYG-QF-V  112 (286)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTS-CE-E
T ss_pred             ECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCCC-cE-E
Confidence            57888888887888999999976 666666542     123457889994 5554 5555533 89999999543 32 3


Q ss_pred             EEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           75 SWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        75 ~~l-~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      ..+ ..+...+.+++++++++++++...++.|++||.. ++.+..+.   +...+..++++++|+++++...++.|++||
T Consensus       113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~  191 (286)
T 1q7f_A          113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN  191 (286)
T ss_dssp             EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEc
Confidence            333 2345678999999999988888888999999964 55555553   335689999999999888777899999999


Q ss_pred             CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC-cEEcCCC
Q 008356          151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD-SILMPDP  208 (568)
Q Consensus       151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg-~V~VWDl  208 (568)
                      ....  .+..+...++...+..++++++|+++++.            ..++ .|.+||.
T Consensus       192 ~~g~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~------------~~~~~~i~~~~~  236 (286)
T 1q7f_A          192 YEGQ--YLRQIGGEGITNYPIGVGINSNGEILIAD------------NHNNFNLTIFTQ  236 (286)
T ss_dssp             TTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEE------------CSSSCEEEEECT
T ss_pred             CCCC--EEEEEccCCccCCCcEEEECCCCCEEEEe------------CCCCEEEEEECC
Confidence            8653  23334322334678899999876544443            4454 8899984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.34  E-value=2.9e-10  Score=114.81  Aligned_cols=193  Identities=12%  Similarity=0.125  Sum_probs=133.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC----CeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD----GTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D----GtV~VWDl~t~~~~v~~   76 (568)
                      +|+++|++++++..++.|++||..+++....... +...+.+++|+++++ ++++...+    +.|.+||..+.... ..
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~-~~  127 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQ-DI  127 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCE-EE
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEE-EE
Confidence            3678999777888889999999988876554432 456789999999997 67766666    68999999877632 12


Q ss_pred             ec--cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE-EcCCeEE
Q 008356           77 LK--QHSAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRVV  147 (568)
Q Consensus        77 l~--~H~~~VtslafsPdg~~LaSgs~------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG-s~DG~V~  147 (568)
                      +.  .+...+++++++|+++++++...      .+.|..||..+++..........+..++|+|++++|+++ ..++.|.
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence            22  34567999999999988877654      356788887766554444444568899999999866555 4678999


Q ss_pred             EEECCCCCCceEE-----EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          148 FYDIRGKPQPLTV-----LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       148 VWDlrt~~~~v~~-----l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +||++........     .........+..++++++|+++            ++...++.|.+||.
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~------------v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY------------VAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE------------EEEETTTEEEEECT
T ss_pred             EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE------------EEEcCCCEEEEECC
Confidence            9999643222221     1111111467788888866543            33344678888886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.32  E-value=3.3e-11  Score=123.87  Aligned_cols=202  Identities=9%  Similarity=-0.036  Sum_probs=132.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEE--EccCCCeEEEEE----------------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLD--YSRNSRHLLVTA----------------------   56 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~La--fspdg~~lLaTg----------------------   56 (568)
                      +|+|||++|+.+..++.|++||+.+++....+.. +...+....  ++++++ +++..                      
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhcc
Confidence            3899999999999999999999999887766654 344443333  488887 45432                      


Q ss_pred             eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEECCCCceeeEeecC--CCeEE
Q 008356           57 GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLD------KKLYTYDPGSRRPSSCITYE--APFSS  127 (568)
Q Consensus        57 s~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~D------GtV~IWDlrt~~~v~~~~h~--~~Its  127 (568)
                      ..+..|++||+.+++  ...+..+...+..+.|+| +++.|+.+..+      ..|.++|+..++......+.  ..+..
T Consensus       165 ~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH  242 (388)
T ss_dssp             CCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred             CCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence            244789999998876  455566777899999999 99999887753      37888998776654444443  24778


Q ss_pred             EEEecCCCEEEEEEc-CC----eEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEEeccCCCCeEEEEecC
Q 008356          128 LAFIDDDWILTAGTS-NG----RVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (568)
Q Consensus       128 LafsPdg~~LasGs~-DG----~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~~Las~s~ssd~~~Lls~s~  199 (568)
                      ++|+|||+.|+..+. ++    .|++||+.+++. ..+....++..   ....+.|+|+|+.|+.....  . .......
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~-~~~~~~~  318 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD--D-SGYKIEN  318 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC---------------CC
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeee--c-cccccCC
Confidence            999999997766443 22    399999998742 12212111000   01123688888877654110  0 0011234


Q ss_pred             CCcEEcCCCCC
Q 008356          200 GDSILMPDPLP  210 (568)
Q Consensus       200 Dg~V~VWDlr~  210 (568)
                      +..|++||+..
T Consensus       319 ~~~i~~~d~~~  329 (388)
T 3pe7_A          319 DPFLYVFNMKN  329 (388)
T ss_dssp             CCEEEEEETTT
T ss_pred             CCEEEEEeccC
Confidence            67899999765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.32  E-value=1.3e-10  Score=115.95  Aligned_cols=187  Identities=11%  Similarity=0.065  Sum_probs=132.3

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+|+|+ +++++..++.|++||..++  ...+.. +...+.+++++++++ ++++...++.|.+||..+++.. .....
T Consensus        34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~-~~~~~  108 (296)
T 3e5z_A           34 VYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWE-SIADS  108 (296)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEE-EEECE
T ss_pred             eEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEE-EEeec
Confidence            4789998 6777778899999999876  555554 456788999999997 6776666789999999766522 12111


Q ss_pred             ----CCCCeEEEEEcCCCCEEEEE----e-------------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEE
Q 008356           80 ----HSAPTAGISFSSDDKIIASV----G-------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        80 ----H~~~VtslafsPdg~~LaSg----s-------------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~La  138 (568)
                          ....+++++++|+++++++.    .             ..+.|..+|.. ++......+......++|+|++++|+
T Consensus       109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv  187 (296)
T 3e5z_A          109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLV  187 (296)
T ss_dssp             ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred             cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEE
Confidence                12356789999999988873    2             13467777766 55444445666789999999999997


Q ss_pred             EEEcCCeEEEEECCCCCCc---eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          139 AGTSNGRVVFYDIRGKPQP---LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~---v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +...++.|.+||+......   ...+  ..+...+.+++++++|+++++            .  ++.|.+||..
T Consensus       188 ~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~------------~--~~~v~~~~~~  245 (296)
T 3e5z_A          188 SDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWAS------------A--GDGVHVLTPD  245 (296)
T ss_dssp             EETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEE------------E--TTEEEEECTT
T ss_pred             EeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEE------------c--CCeEEEECCC
Confidence            7777899999999732222   2233  235566778888887654333            2  6778888864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.30  E-value=1.7e-11  Score=125.67  Aligned_cols=199  Identities=11%  Similarity=0.011  Sum_probs=131.9

Q ss_pred             CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+|||++|+.....   ..|++||+.+++... +..+.......+.|+|+++ .|+.++.++.|++||+.+++. ....
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~~-~~~~  118 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLEE-QVIY  118 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCCE-EEEE
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCCc-EEEE
Confidence            489999998877543   368889988776543 3332333333368999998 677778888999999988763 2233


Q ss_pred             ccCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCeEEEEECCCCceeeEeecCCCeEEEEEec-
Q 008356           78 KQHSAPTAG-------------------ISFSSDDKIIASV-----GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-  132 (568)
Q Consensus        78 ~~H~~~Vts-------------------lafsPdg~~LaSg-----s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-  132 (568)
                      ..+......                   +.|+|+++.++..     ..+..|++||+.+++......+...+..+.|+| 
T Consensus       119 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~  198 (396)
T 3c5m_A          119 TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPF  198 (396)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCC
Confidence            333332222                   3456777666544     356689999999988777777778899999999 


Q ss_pred             CCCEEEEEEcC------CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356          133 DDWILTAGTSN------GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       133 dg~~LasGs~D------G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW  206 (568)
                      ++..|+..+.+      ..|.+||+.+..  ...+........+..++|+|+|++|+......+       ..++.|++|
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~-------~~~~~l~~~  269 (396)
T 3c5m_A          199 DDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG-------QTDRVIYKA  269 (396)
T ss_dssp             EEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETT-------TCCEEEEEE
T ss_pred             CCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEEEecCCC-------CccceEEEE
Confidence            78877776543      368889987653  122221111235788999999887765522111       112448999


Q ss_pred             CCCCC
Q 008356          207 DPLPS  211 (568)
Q Consensus       207 Dlr~~  211 (568)
                      |+...
T Consensus       270 d~~~g  274 (396)
T 3c5m_A          270 NPETL  274 (396)
T ss_dssp             CTTTC
T ss_pred             ECCCC
Confidence            98653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=1.4e-10  Score=118.60  Aligned_cols=192  Identities=7%  Similarity=0.088  Sum_probs=135.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-eeEEee--------CCCCCcEEEEEEcc-CCCeEEEEEe-CCCeEEEEECCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELK--------DPNEQVLRVLDYSR-NSRHLLVTAG-DDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~-~v~~l~--------~~h~~~Vs~Lafsp-dg~~lLaTgs-~DGtV~VWDl~t   69 (568)
                      +++++|+++++...++.|++||..... .+..+.        ..+-.....|++++ ++. ++++.+ .++.|++||.+.
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFSPSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEECTTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEcCCC
Confidence            367899988887788999999975432 455552        12334578899999 665 777776 689999999554


Q ss_pred             CCceeEEecc----------CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCC
Q 008356           70 RSPKVSWLKQ----------HSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDW  135 (568)
Q Consensus        70 ~~~~v~~l~~----------H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~  135 (568)
                      ..  +..+..          +......|+++|+ ++++++...++.|++||..+++.+..+.   +...+..++|+| +.
T Consensus       176 ~~--~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~  252 (329)
T 3fvz_A          176 KF--VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF  252 (329)
T ss_dssp             CE--EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred             CE--EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence            32  333322          2234899999998 7777777789999999999888887773   556788999999 33


Q ss_pred             EEEE-------EEcCCeEEEEECCCCCCceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          136 ILTA-------GTSNGRVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       136 ~Las-------Gs~DG~V~VWDlrt~~~~v~~l~-~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      .++.       ...+..|++||+.+.. .+..+. ...+...+..|+++++|            .++++...++.|++|+
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG------------~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDG------------TVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTS------------EEEEEESSSCCEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCC------------CEEEEECCCCEEEEEe
Confidence            3333       2334589999998774 333332 12466778999999965            3455556688899998


Q ss_pred             CC
Q 008356          208 PL  209 (568)
Q Consensus       208 lr  209 (568)
                      +.
T Consensus       320 ~~  321 (329)
T 3fvz_A          320 LT  321 (329)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.28  E-value=9.3e-11  Score=130.21  Aligned_cols=149  Identities=13%  Similarity=0.053  Sum_probs=108.5

Q ss_pred             cCCCCE-EEEEEC-CCcEEEEECC--CCceeEEeeCC----CCCcEEEEEEccCCCeEEEEEeCC----------CeEEE
Q 008356            3 NCKDEH-LASISL-SGDLILHNLA--SGAKAAELKDP----NEQVLRVLDYSRNSRHLLVTAGDD----------GTLHL   64 (568)
Q Consensus         3 SpdG~~-LasGs~-DG~V~VWDl~--tg~~v~~l~~~----h~~~Vs~Lafspdg~~lLaTgs~D----------GtV~V   64 (568)
                      ||||++ |+.... +..|+++++.  .......+...    +...+..++|+|+|+ .|+.++.|          ..|++
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEE
Confidence            499998 776654 5667777765  20334445432    455678899999998 56666655          58999


Q ss_pred             EECCC------CCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECC-CC---ceeeEee-cCCC
Q 008356           65 WDTTG------RSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPG-SR---RPSSCIT-YEAP  124 (568)
Q Consensus        65 WDl~t------~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~D--------GtV~IWDlr-t~---~~v~~~~-h~~~  124 (568)
                      ||+.+      +.  ...+. .+...+..++|+|||++|+.++.+        ..|++||+. ++   +...... +...
T Consensus       166 ~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          166 VPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             EETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             EECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            99987      44  34555 666778889999999999988755        379999999 56   4444443 4688


Q ss_pred             eEEEEEecCCCEEEEEEcCC--eEEEEECCCC
Q 008356          125 FSSLAFIDDDWILTAGTSNG--RVVFYDIRGK  154 (568)
Q Consensus       125 ItsLafsPdg~~LasGs~DG--~V~VWDlrt~  154 (568)
                      +..++|+|||++++++..++  .|.+||+.++
T Consensus       244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~  275 (662)
T 3azo_A          244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATG  275 (662)
T ss_dssp             EEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred             EcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence            99999999999888888888  5666666554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.27  E-value=5e-11  Score=132.42  Aligned_cols=177  Identities=10%  Similarity=-0.011  Sum_probs=123.2

Q ss_pred             ccCCCCEEEEE--ECCCcEEEEECCCCceeEEeeCCCCCcEE---------EEEEc--cCCCe-EEEEEeCCCeEEEEEC
Q 008356            2 YNCKDEHLASI--SLSGDLILHNLASGAKAAELKDPNEQVLR---------VLDYS--RNSRH-LLVTAGDDGTLHLWDT   67 (568)
Q Consensus         2 fSpdG~~LasG--s~DG~V~VWDl~tg~~v~~l~~~h~~~Vs---------~Lafs--pdg~~-lLaTgs~DGtV~VWDl   67 (568)
                      |++++-+++..  ..++...||....+.....+..+. ..+.         .+.|+  ||++. ++++...+..|++|++
T Consensus        31 ~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~  109 (662)
T 3azo_A           31 AVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEP  109 (662)
T ss_dssp             EETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECT
T ss_pred             EcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcC
Confidence            45554445555  447889999965555556666533 3333         45565  99986 4444445677888887


Q ss_pred             C--C-CCceeEEecc-----CCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CceeeEe-ecC
Q 008356           68 T--G-RSPKVSWLKQ-----HSAPTAGISFSSDDKIIASVGLD----------KKLYTYDPGS------RRPSSCI-TYE  122 (568)
Q Consensus        68 ~--t-~~~~v~~l~~-----H~~~VtslafsPdg~~LaSgs~D----------GtV~IWDlrt------~~~v~~~-~h~  122 (568)
                      .  + +.  ...+..     |...+.+++|+||++.|++++.|          ..|++||+.+      ++..... .+.
T Consensus       110 ~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~  187 (662)
T 3azo_A          110 DAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH  187 (662)
T ss_dssp             TSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS
T ss_pred             CCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC
Confidence            6  3 44  344555     66788999999999999998877          5899999998      6655555 555


Q ss_pred             CCeEEEEEecCCCEEEEEEcCC--------eEEEEECCC-CC--CceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356          123 APFSSLAFIDDDWILTAGTSNG--------RVVFYDIRG-KP--QPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       123 ~~ItsLafsPdg~~LasGs~DG--------~V~VWDlrt-~~--~~v~~l~~~~h~~~VtsLafspdg~~La  183 (568)
                      ..+..++|+|||++|+.++.++        .|++||+.. +.  ....+..  .|...+..++|+|+|++++
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--~~~~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG--GPEEAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--ETTBCEEEEEECTTSCEEE
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC--CCCceEcceEECCCCeEEE
Confidence            6788899999999999887553        799999984 41  2223332  4567899999999877433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.26  E-value=3e-11  Score=123.82  Aligned_cols=199  Identities=7%  Similarity=-0.023  Sum_probs=131.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEE-------------------EEEccCCCeEEEEE----eC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV-------------------LDYSRNSRHLLVTA----GD   58 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~-------------------Lafspdg~~lLaTg----s~   58 (568)
                      |+|||++|+.+..++.|++||+.+++....... +......                   +.|+|+++.+++..    ..
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~  166 (396)
T 3c5m_A           88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP  166 (396)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred             ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence            799999999999999999999988876655553 2222222                   34567766322222    45


Q ss_pred             CCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEECCCCceeeEeec--CCCeEEEE
Q 008356           59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLD------KKLYTYDPGSRRPSSCITY--EAPFSSLA  129 (568)
Q Consensus        59 DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~D------GtV~IWDlrt~~~v~~~~h--~~~ItsLa  129 (568)
                      +..|++||+.+++  ...+..+...+..+.|+| +++.|+.++.+      ..|.+||+..++......+  ...+..++
T Consensus       167 ~~~l~~~d~~~g~--~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          167 TCRLIKVDIETGE--LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred             cceEEEEECCCCc--EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence            6789999998876  334446777899999999 78877776643      3689999877654443332  22478899


Q ss_pred             EecCCCEEEEEEcC-----CeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEE------EEe
Q 008356          130 FIDDDWILTAGTSN-----GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETAL------LGG  197 (568)
Q Consensus       130 fsPdg~~LasGs~D-----G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~L------ls~  197 (568)
                      |+|+|++|+.++.+     +.|++||+.++. ...+.. .  .. .. +.|+| +|++++.....  ....      +..
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~-~--~~-~~-~~~s~~dg~~l~~~~~~--~p~~~~~~~~~~~  316 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMV-M--PP-CS-HLMSNFDGSLMVGDGCD--APVDVADADSYNI  316 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEE-C--CS-EE-EEEECSSSSEEEEEECC--C----------CC
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCC-eEEeee-C--CC-CC-CCccCCCCceEEEecCC--cceeecccccccc
Confidence            99999988777554     459999998763 222222 1  11 23 88999 98877664211  1000      011


Q ss_pred             cCCCcEEcCCCCCC
Q 008356          198 AVGDSILMPDPLPS  211 (568)
Q Consensus       198 s~Dg~V~VWDlr~~  211 (568)
                      ..+..|++||+...
T Consensus       317 ~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          317 ENDPFLYVLNTKAK  330 (396)
T ss_dssp             CCCCEEEEEETTTT
T ss_pred             CCCCcEEEEecccC
Confidence            23578999987643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=8.4e-11  Score=124.94  Aligned_cols=169  Identities=8%  Similarity=0.004  Sum_probs=127.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc-----------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA-----------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~-----------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t   69 (568)
                      ++++...++++|+.+ .+.||++.+.+           ....+.  ... |+.|+|  ++. +|+++ .++.|++||+..
T Consensus        44 ais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~-~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           44 DISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGD-QVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             EEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETT-EEEEE-ESSEEEEEESSS
T ss_pred             EEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCC-EEEEE-cCCcEEEEEchh
Confidence            356788899999887 56669865333           112233  344 899999  666 67777 889999999987


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356           70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY  149 (568)
Q Consensus        70 ~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VW  149 (568)
                      ... ......|...|.++.+.+.  .++++..||.|.+||+.+++...   +...|+|++|+|+|  +++|..||.|++|
T Consensus       116 l~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~  187 (388)
T 1xip_A          116 LSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSF  187 (388)
T ss_dssp             TTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred             hhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence            663 4456677788998888754  38889999999999999877654   44689999999999  7889999999999


Q ss_pred             ECCCCCCc-eEEEe-------ecCCCCCeeEEEEccCCCeEEEe
Q 008356          150 DIRGKPQP-LTVLR-------ACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       150 Dlrt~~~~-v~~l~-------~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +.+..... .+.+.       ..+|...|.+|+|.+++.++++-
T Consensus       188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            98876311 23331       11377889999999999988764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.23  E-value=4.8e-10  Score=112.89  Aligned_cols=186  Identities=8%  Similarity=-0.034  Sum_probs=136.2

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SA   82 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H-~~   82 (568)
                      ..+++|++++.++.|++||.++|+.+..+..+....++++.+.|+|+ +|+  +.++.|+.||. +++. +..+..+ ..
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~   77 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRE-LWNIAAPAGC   77 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCE-EEEEECCTTC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCE-EEEEcCCCCc
Confidence            35688999999999999999999999999864434678899999997 666  45788999999 5553 4445443 35


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEeecC-------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           83 PTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCITYE-------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~~h~-------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+.++.+.++++++++.+. ++.|..+|. +++.+..+...       .....+++.++|++|++...++.|.+||.+ +
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            6889999999999999887 888888886 67766665321       234566788999999999999999999998 5


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      + .+..+.   ....+.++.+.++|+.++++            ..++.|..+|.....
T Consensus       156 ~-~~w~~~---~~~~~~~~~~~~~g~~~v~~------------~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          156 Q-LLNSVK---LSGTPFSSAFLDNGDCLVAC------------GDAHCFVQLNLESNR  197 (276)
T ss_dssp             C-EEEEEE---CSSCCCEEEECTTSCEEEEC------------BTTSEEEEECTTTCC
T ss_pred             C-EEEEEE---CCCCccceeEcCCCCEEEEe------------CCCCeEEEEeCcCCc
Confidence            3 333333   22456667777776665554            334556666655433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.22  E-value=2.8e-10  Score=115.28  Aligned_cols=177  Identities=15%  Similarity=0.230  Sum_probs=116.4

Q ss_pred             CccCCCCEEEEEECC---C--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-----------------
Q 008356            1 MYNCKDEHLASISLS---G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-----------------   58 (568)
Q Consensus         1 afSpdG~~LasGs~D---G--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-----------------   58 (568)
                      +|+|||++|+.+..+   +  .|++||+.+++....... . . +..++|+|+++.+++++..                 
T Consensus        65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             EECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             EECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            489999999987754   3  488889887776554443 2 3 8889999999855554433                 


Q ss_pred             ---------CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEECCCCceeeEee
Q 008356           59 ---------DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---------KLYTYDPGSRRPSSCIT  120 (568)
Q Consensus        59 ---------DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG---------tV~IWDlrt~~~v~~~~  120 (568)
                               ...|++||+.+++. +..+.. . .+..+.|+|++ +++++..+.         .|.++|  +++......
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEecc
Confidence                     25799999987763 133333 3 78899999999 777776542         455666  555444444


Q ss_pred             cCCCeEEEEEecCCCEEEEEEcC--------CeEEEEECCCCCCceEEEeecCCCCCeeE-EEEccCCCeEEEeccCCCC
Q 008356          121 YEAPFSSLAFIDDDWILTAGTSN--------GRVVFYDIRGKPQPLTVLRACSSSEAVSS-LCWQRAKPVFIDETTCKAE  191 (568)
Q Consensus       121 h~~~ItsLafsPdg~~LasGs~D--------G~V~VWDlrt~~~~v~~l~~~~h~~~Vts-Lafspdg~~Las~s~ssd~  191 (568)
                      + ..+..+  +|+|++|+.++.+        ..|.+||  ++ +.....  ..|...+.. +.|+ ++ +          
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~--~~~~~~~~~~~~~s-dg-~----------  275 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGIL--DEVDRGVGQAKIKD-GK-V----------  275 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESS--TTCCSEEEEEEEET-TE-E----------
T ss_pred             C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-ceEecc--ccCCcccCCccEEc-Cc-E----------
Confidence            4 455444  9999998887754        3688888  33 222222  245667775 7887 64 3          


Q ss_pred             eEEEEecCCCcEEcCCCC
Q 008356          192 TALLGGAVGDSILMPDPL  209 (568)
Q Consensus       192 ~~Lls~s~Dg~V~VWDlr  209 (568)
                        ++.+..++.+++| +.
T Consensus       276 --~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          276 --YFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             --EEEEEETTEEEEE-EE
T ss_pred             --EEEEecCCcEEEE-Ec
Confidence              3344457788888 65

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.21  E-value=6.2e-10  Score=125.74  Aligned_cols=173  Identities=10%  Similarity=0.069  Sum_probs=118.0

Q ss_pred             CccCCCCEEEEEECCC-----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--------------
Q 008356            1 MYNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--------------   61 (568)
Q Consensus         1 afSpdG~~LasGs~DG-----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--------------   61 (568)
                      +|+|||++||.+..++     .|++||+.+++.+..... + ..+..++|+||++ .|+.+..++.              
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCC-EEEEEEECCccccccccccccCCC
Confidence            4899999998876543     899999999887654332 1 1245689999998 4555555554              


Q ss_pred             --EEEEECCCCCce-eEE--eccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------Cc--eeeEeecCC
Q 008356           62 --LHLWDTTGRSPK-VSW--LKQHSAPTAGISFSSDDKIIASVGL-----DKKLYTYDPGS------RR--PSSCITYEA  123 (568)
Q Consensus        62 --V~VWDl~t~~~~-v~~--l~~H~~~VtslafsPdg~~LaSgs~-----DGtV~IWDlrt------~~--~v~~~~h~~  123 (568)
                        |++|++.+.... ...  ...|...+..+.|+||+++|+....     +..|++||+.+      +.  ......+..
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~  287 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE  287 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence              999999776532 222  2235566889999999999988764     66899999986      42  333334444


Q ss_pred             CeEEEEEecCCCEEEEEEcC----CeEEEEECCCCCC-ceEEEeecCCCC--CeeEEEEccCC
Q 008356          124 PFSSLAFIDDDWILTAGTSN----GRVVFYDIRGKPQ-PLTVLRACSSSE--AVSSLCWQRAK  179 (568)
Q Consensus       124 ~ItsLafsPdg~~LasGs~D----G~V~VWDlrt~~~-~v~~l~~~~h~~--~VtsLafspdg  179 (568)
                      .+.. .|+++|..|+..+.+    +.|.+||+.+... ..+.+.  .|..  .+..++|.+++
T Consensus       288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRSN  347 (710)
T ss_dssp             SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCEEEEEEEETTT
T ss_pred             cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CCCCCCeEEEEEEEcCC
Confidence            5544 588899888877653    3699999987632 123333  3333  67788887543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.20  E-value=1.6e-09  Score=109.02  Aligned_cols=202  Identities=13%  Similarity=0.052  Sum_probs=147.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec--
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK--   78 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-DGtV~VWDl~t~~~~v~~l~--   78 (568)
                      +.|+|++|+  +.++.|+.||. +++.+..+..+....+.++.+.++|+ ++++.+. ++.|..+|.++..  +..+.  
T Consensus        44 ~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~Gk~--l~~~~~~  117 (276)
T 3no2_A           44 ATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNMKGEV--LSKTEFE  117 (276)
T ss_dssp             ECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECTTSCE--EEEEEEC
T ss_pred             ECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeCCCCE--EEEEecc
Confidence            578999888  45778999998 89999999875445788899999998 6777766 7888888864432  22222  


Q ss_pred             ----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           79 ----QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        79 ----~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                          .+......+.+.++++++++...++.|.+||.. ++.+..+.....+..+...++|++++++..+++|..+|.+++
T Consensus       118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence                122345567788999999999999999999998 998888876667778888999999999998899999999977


Q ss_pred             CCceEEEeecC----CCCCeeEEEEccCCCeEEEeccCC-------CCeEEEEecCCCcEEcCCCCCCC
Q 008356          155 PQPLTVLRACS----SSEAVSSLCWQRAKPVFIDETTCK-------AETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       155 ~~~v~~l~~~~----h~~~VtsLafspdg~~Las~s~ss-------d~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +. +..+....    ....+..+...++|..+++.....       +...++--..++.| +|......
T Consensus       197 ~~-~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~  263 (276)
T 3no2_A          197 RI-VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKV  263 (276)
T ss_dssp             CE-EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTT
T ss_pred             cE-EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCcc
Confidence            43 33332111    123378889999999988873211       23345555557777 77655433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.19  E-value=1.8e-09  Score=105.19  Aligned_cols=190  Identities=8%  Similarity=0.025  Sum_probs=133.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.++|+++++.. ++.|.+||..... ...+.......+..+++.++++ ++++...++.|.+|+..+... ........
T Consensus        74 ~~~~g~l~v~~~-~~~i~~~d~~~~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~  149 (270)
T 1rwi_B           74 VDGAGTVYVTDF-NNRVVTLAAGSNN-QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ-TVLPFTGL  149 (270)
T ss_dssp             ECTTCCEEEEET-TTEEEEECTTCSC-CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC-EECCCCSC
T ss_pred             ECCCCCEEEEcC-CCEEEEEeCCCce-EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee-EeeccccC
Confidence            567888555544 8899999976543 3334322335678899999987 777777789999997655442 22222333


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ..+.+++++++++++++...++.|.+||.......... .....+..++++++|+++++...++.|.+||......  ..
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~~  227 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TV  227 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--EE
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--ee
Confidence            46789999999997777777889999998876654332 2336789999999997777777788999999976532  22


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .. ..+...+.+++++++|+            ++++...++.|+++++..
T Consensus       228 ~~-~~~~~~p~~i~~~~~g~------------l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          228 LP-FTGLNTPLAVAVDSDRT------------VYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CC-CCSCSCEEEEEECTTCC------------EEEEEGGGTEEEEECCCG
T ss_pred             ec-cCCCCCceeEEECCCCC------------EEEEECCCCEEEEEcCCC
Confidence            11 13335688999988654            445556689999998754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.18  E-value=1.3e-09  Score=113.64  Aligned_cols=189  Identities=6%  Similarity=0.048  Sum_probs=117.8

Q ss_pred             CccCCCCEEEEEEC----------CCcEEEEECCCCceeEEeeCCC-----CCcEEEEEEccCCCeEEEEEe-C-CCeEE
Q 008356            1 MYNCKDEHLASISL----------SGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAG-D-DGTLH   63 (568)
Q Consensus         1 afSpdG~~LasGs~----------DG~V~VWDl~tg~~v~~l~~~h-----~~~Vs~Lafspdg~~lLaTgs-~-DGtV~   63 (568)
                      +|+|||++|+++..          ++.|.+||+.+++.+..+....     ......++|+|+++ +|+++. . ++.|.
T Consensus        56 ~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~  134 (361)
T 2oiz_A           56 QVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIG  134 (361)
T ss_dssp             EECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEE
T ss_pred             EECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEE
Confidence            48999999998863          5679999999999888776421     22345689999998 555554 3 68999


Q ss_pred             EEECCCCCceeEE-eccCCCCeEEEEEcCCC-CEEEEEe-----------------------------------------
Q 008356           64 LWDTTGRSPKVSW-LKQHSAPTAGISFSSDD-KIIASVG-----------------------------------------  100 (568)
Q Consensus        64 VWDl~t~~~~v~~-l~~H~~~VtslafsPdg-~~LaSgs-----------------------------------------  100 (568)
                      +||+.+.+. +.. +. +.. ...+.+.|++ ..+++.+                                         
T Consensus       135 v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          135 IVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            999988753 333 22 111 1112233321 2333333                                         


Q ss_pred             -------CCCeEEEEECCCCcee--eEeec-----------CCCeEEEEEecCCCEEEEEEc-----------CCeEEEE
Q 008356          101 -------LDKKLYTYDPGSRRPS--SCITY-----------EAPFSSLAFIDDDWILTAGTS-----------NGRVVFY  149 (568)
Q Consensus       101 -------~DGtV~IWDlrt~~~v--~~~~h-----------~~~ItsLafsPdg~~LasGs~-----------DG~V~VW  149 (568)
                             .++.|.++|+......  ..+..           ......++|+|+++.++++..           .+.|.+|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence                   3444555554432211  11100           011112789999888887654           3489999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      |+.+.+ .+..+.  .+.  +.+++|+|+|++|++.            .. +.|.+||+...
T Consensus       292 D~~t~~-~v~~i~--~~~--p~~ia~spdg~~l~v~------------n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          292 DTKTKQ-RVARIP--GRD--ALSMTIDQQRNLMLTL------------DG-GNVNVYDISQP  335 (361)
T ss_dssp             ETTTTE-EEEEEE--CTT--CCEEEEETTTTEEEEE------------CS-SCEEEEECSSS
T ss_pred             ECCCCc-EEEEEe--cCC--eeEEEECCCCCEEEEe------------CC-CeEEEEECCCC
Confidence            999873 444454  344  9999999987765443            33 88999998776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.18  E-value=5.4e-10  Score=112.84  Aligned_cols=188  Identities=12%  Similarity=0.118  Sum_probs=133.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|++++..++....++.+++|   .++....+.. +...+.+++|+++++ +++++..++.|++||..+++. ......+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~-~~~~~~~   85 (333)
T 2dg1_A           12 FYSGKSNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEI-KRPFVSH   85 (333)
T ss_dssp             CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECS
T ss_pred             eecCCccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcE-EEEeeCC
Confidence            367777767666778888888   3455556665 344568899999987 788888899999999987763 2233356


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEc------CCeEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTS------NGRVV  147 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~D----GtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~------DG~V~  147 (568)
                      ...+.+++|+++++++++...+    +.|.+||..+++....+.   ....+..++++|+|+++++...      .+.|.
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence            6789999999999988877766    689999998877553332   3457899999999987776653      35677


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .||..+.. . ..+.  .+...+..++|+|+++++           +++...++.|.+||+.
T Consensus       166 ~~~~~~~~-~-~~~~--~~~~~~~~i~~~~dg~~l-----------~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          166 YVSPDFRT-V-TPII--QNISVANGIALSTDEKVL-----------WVTETTANRLHRIALE  212 (333)
T ss_dssp             EECTTSCC-E-EEEE--EEESSEEEEEECTTSSEE-----------EEEEGGGTEEEEEEEC
T ss_pred             EEeCCCCE-E-EEee--cCCCcccceEECCCCCEE-----------EEEeCCCCeEEEEEec
Confidence            77765542 2 2222  123457889999976544           2333446788888875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.15  E-value=2.2e-09  Score=110.01  Aligned_cols=182  Identities=8%  Similarity=0.001  Sum_probs=129.5

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-----
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-----   81 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-----   81 (568)
                      ++.++...++.|.+||..+++.+..+..  ......++++++++ ++++...++.|.+||..+.+. ...+....     
T Consensus        55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~  130 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMES  130 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTT
T ss_pred             EEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeE-EEEEEcCCccccC
Confidence            3344445578999999999999888863  35567899988874 666555899999999988763 33333222     


Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC----------CeEEEE
Q 008356           82 APTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN----------GRVVFY  149 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D----------G~V~VW  149 (568)
                      .....+++  ++..|+.+.  .++.|.+||+.+++.+..+........++++++|++++++..+          +.|.+|
T Consensus       131 ~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          131 GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            14556777  344555444  4889999999999988888766677889999999877776654          789999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      |.++.+ ....+.. ........++|+|+++.+...              ++.|.+||+..
T Consensus       209 d~~t~~-v~~~~~~-~~g~~p~~la~~~d~~~lyv~--------------~~~v~~~d~~t  253 (328)
T 3dsm_A          209 DAETFT-VEKQFKF-KLGDWPSEVQLNGTRDTLYWI--------------NNDIWRMPVEA  253 (328)
T ss_dssp             ETTTTE-EEEEEEC-CTTCCCEEEEECTTSCEEEEE--------------SSSEEEEETTC
T ss_pred             ECCCCe-EEEEEec-CCCCCceeEEEecCCCEEEEE--------------ccEEEEEECCC
Confidence            998763 3333331 223468899999987666554              22788888754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.15  E-value=2.7e-09  Score=111.16  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=114.7

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 008356            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------   69 (568)
Q Consensus         1 afSpdG~~LasGs~--DG~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--------   69 (568)
                      +|+|||++|+++..  ++.|.+||+.+++.+.. +..  .. ...+.+.|++...+++.+.||.+.+|++..        
T Consensus       114 ~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~  190 (361)
T 2oiz_A          114 RQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS  190 (361)
T ss_dssp             EECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred             EECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence            37899999998874  57999999999988777 542  11 112334444433445555555555555432        


Q ss_pred             ----------------------------------------CCcee-EEecc------C----CCCeEEEEEcCCCCEEEE
Q 008356           70 ----------------------------------------RSPKV-SWLKQ------H----SAPTAGISFSSDDKIIAS   98 (568)
Q Consensus        70 ----------------------------------------~~~~v-~~l~~------H----~~~VtslafsPdg~~LaS   98 (568)
                                                              ....+ ..+..      +    ......++|+|+++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv  270 (361)
T 2oiz_A          191 RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV  270 (361)
T ss_dssp             ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE
T ss_pred             cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE
Confidence                                                    11000 00000      0    001112688998887776


Q ss_pred             EeC-----------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC-CceEEEeecCC
Q 008356           99 VGL-----------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-QPLTVLRACSS  166 (568)
Q Consensus        99 gs~-----------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~-~~v~~l~~~~h  166 (568)
                      +..           ...|.+||+.+++.+..+.... +..++|+|+|++|+++.. +.|.+||+.+.. +.+..+  ..+
T Consensus       271 ~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i--~~~  346 (361)
T 2oiz_A          271 FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI--EGA  346 (361)
T ss_dssp             EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE--TTS
T ss_pred             EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe--ccC
Confidence            643           3489999999999998886556 999999999999998887 999999998862 122222  256


Q ss_pred             CCCeeEEEEccCCC
Q 008356          167 SEAVSSLCWQRAKP  180 (568)
Q Consensus       167 ~~~VtsLafspdg~  180 (568)
                      ......++++|+|+
T Consensus       347 G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          347 AEASLQVQFHPVGG  360 (361)
T ss_dssp             CSSEEEEEECCCSC
T ss_pred             CCCcEEEEecCCCC
Confidence            67788999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.14  E-value=1.8e-09  Score=110.55  Aligned_cols=188  Identities=9%  Similarity=0.021  Sum_probs=130.8

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCC----CcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCceeE
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~----~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~~v~   75 (568)
                      +++++ .|+++. .++.|.+||+.+++....+.....    .....+++  ++..++++.. .++.|.+||..+.+. ..
T Consensus        91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~  166 (328)
T 3dsm_A           91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VD  166 (328)
T ss_dssp             EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EE
T ss_pred             EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EE
Confidence            45777 555555 789999999999988877764321    13445677  3443555544 489999999988763 33


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCceeeEeec--CCCeEEEEEecCCCEEEEEEcC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLD----------KKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~D----------GtV~IWDlrt~~~v~~~~h--~~~ItsLafsPdg~~LasGs~D  143 (568)
                      .+.. ......+.+++++++++++..+          +.|.+||..+++....+..  ......++|+|++++|+++.. 
T Consensus       167 ~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          167 ELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             EEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             EEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence            3333 3346788999999877777655          7899999999987766643  347899999999999988765 


Q ss_pred             CeEEEEECCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe----cCCCcEEcCCCC
Q 008356          144 GRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG----AVGDSILMPDPL  209 (568)
Q Consensus       144 G~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~----s~Dg~V~VWDlr  209 (568)
                       .|.+||+.+..... ..+.  .+......++++|++.           .++++.    ..++.|.+||..
T Consensus       245 -~v~~~d~~t~~~~~~~~~~--~~~~~p~gi~vdp~~g-----------~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLE--FRDTKYYGLTVNPNNG-----------EVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBC--CCSSCEEEEEECTTTC-----------CEEEEECTTSSSEEEEEEECTT
T ss_pred             -EEEEEECCCCceeeeeeec--CCCCceEEEEEcCCCC-----------eEEEEcccccccCCEEEEECCC
Confidence             89999998764211 1111  1246688999998532           334444    447888999876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.12  E-value=3.7e-09  Score=103.02  Aligned_cols=189  Identities=12%  Similarity=0.060  Sum_probs=127.0

Q ss_pred             ccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-c
Q 008356            2 YNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-Q   79 (568)
Q Consensus         2 fSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~   79 (568)
                      ++++|++++ +...++.|.+||..++... .+.......+.++++.++++ ++++.. ++.|.+||..+...  ..+. .
T Consensus        31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~--~~~~~~  105 (270)
T 1rwi_B           31 VDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ--TVLPFD  105 (270)
T ss_dssp             ECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC--EECCCC
T ss_pred             ECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE--eeeecC
Confidence            568888666 4367789999997554432 22222334567799999987 566555 88999999877652  2222 3


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ....+.++++.++++++++...++.|.+||..+....... .....+..++++++|+++++...++.|.+||......  
T Consensus       106 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--  183 (270)
T 1rwi_B          106 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--  183 (270)
T ss_dssp             SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--
T ss_pred             CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--
Confidence            3367899999999998888778899999987655443222 2334678999999999777777788999999887632  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .. ....+...+.+++++++|.+            +++...++.|.+||...
T Consensus       184 ~~-~~~~~~~~p~~i~~d~~g~l------------~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          184 VV-LPFTDITAPWGIAVDEAGTV------------YVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             EE-CCCSSCCSEEEEEECTTCCE------------EEEETTTSCEEEECTTC
T ss_pred             Ee-ecccCCCCceEEEECCCCCE------------EEEECCCCcEEEEcCCC
Confidence            11 11123366888999886533            34444577888888643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.11  E-value=1.5e-09  Score=122.43  Aligned_cols=191  Identities=12%  Similarity=0.007  Sum_probs=125.2

Q ss_pred             CccCCCCEEEEE-----ECCCcEEEEECCCCcee-EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe-------------
Q 008356            1 MYNCKDEHLASI-----SLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-------------   61 (568)
Q Consensus         1 afSpdG~~LasG-----s~DG~V~VWDl~tg~~v-~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt-------------   61 (568)
                      +|+|||++||.+     +.+..|++||+.+++.+ ..... . .....++|+|+|+ .|+.++.|..             
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~-~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~  203 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-G-GKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTT  203 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-C-CTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCE
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-c-ccccceEEecCCC-EEEEEEecCCCCCccccCCCCCE
Confidence            489999999844     33468999999998864 21111 1 1115689999998 5666666665             


Q ss_pred             EEEEECCCCCce---eEEeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCceeeEeecCCCeEEEEEecCC
Q 008356           62 LHLWDTTGRSPK---VSWLKQHSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCITYEAPFSSLAFIDDD  134 (568)
Q Consensus        62 V~VWDl~t~~~~---v~~l~~H~~~VtslafsPdg~~LaSgs~DG----tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg  134 (568)
                      |++|++.+....   +.....|...+..+.|+||+++|+..+.++    .|++||..+++......+...+....+ ++|
T Consensus       204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g  282 (695)
T 2bkl_A          204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKD  282 (695)
T ss_dssp             EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETT
T ss_pred             EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCC
Confidence            999999876522   222334556789999999999998887666    788888766666555566666666667 566


Q ss_pred             CEEEEEEc----CCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          135 WILTAGTS----NGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       135 ~~LasGs~----DG~V~VWDlrt~~~-~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      . |+..+.    ++.|.+||+.+... ....+....+...|..++|. +            +.++++...|+..++|.+.
T Consensus       283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~------------~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G------------GHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T------------TEEEEEEEETTEEEEEEEE
T ss_pred             c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C------------CEEEEEEEECCEEEEEEEe
Confidence            6 554443    58899999987532 12233211124457777776 2            2344555557777776543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.08  E-value=1.8e-08  Score=111.94  Aligned_cols=189  Identities=14%  Similarity=0.133  Sum_probs=136.4

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC--CCCceeEEeccCCCC
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSWLKQHSAP   83 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~--t~~~~v~~l~~H~~~   83 (568)
                      +.++++...++.|.++|..+++.+..+..  ...+..+.|+|+++ ++++++.|+.|.+||+.  +.+ .+..+.... .
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~-~v~~i~~G~-~  241 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPT-TVAEIKIGS-E  241 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCC-EEEEEECCS-E
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCc-EeEEEecCC-C
Confidence            34556666789999999999999988874  34567899999998 67778899999999995  554 344555433 4


Q ss_pred             eEEEEEc----CCCCEEEEEe-CCCeEEEEECCCCceeeEeec------------CCCeEEEEEecCCCEEEE-EEcCCe
Q 008356           84 TAGISFS----SDDKIIASVG-LDKKLYTYDPGSRRPSSCITY------------EAPFSSLAFIDDDWILTA-GTSNGR  145 (568)
Q Consensus        84 Vtslafs----Pdg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h------------~~~ItsLafsPdg~~Las-Gs~DG~  145 (568)
                      ...++|+    |++++++++. .++.|.++|..+.+++..+..            ...+..+..++++..+++ ...+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6889999    6999887776 458999999999988877632            125778888887665444 456799


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      |.++|....... .+ ...........+.|+|+|++++.+           ...++.|.++|+....
T Consensus       322 v~~vd~~~~~~~-~v-~~i~~~~~~~d~~~~pdgr~~~va-----------~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          322 ILLVDYTDLNNL-KT-TEISAERFLHDGGLDGSHRYFITA-----------ANARNKLVVIDTKEGK  375 (567)
T ss_dssp             EEEEETTCSSEE-EE-EEEECCSSEEEEEECTTSCEEEEE-----------EGGGTEEEEEETTTTE
T ss_pred             EEEEecCCCccc-ee-eeeeccccccCceECCCCCEEEEE-----------eCCCCeEEEEECCCCc
Confidence            999999865322 21 112334567788999988776444           3335667777776543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.07  E-value=5.9e-09  Score=103.88  Aligned_cols=173  Identities=11%  Similarity=0.040  Sum_probs=118.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC---CCCcEEEEEEccCCCeEEEEE----e-------------CCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTA----G-------------DDG   60 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~---h~~~Vs~Lafspdg~~lLaTg----s-------------~DG   60 (568)
                      +|+++|+++++...++.|.+||..+++........   ....+.+++++++|+ ++++.    .             ..+
T Consensus        75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCc
Confidence            36789998777666789999999888754433211   122456789999997 67763    2             134


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCce---eeEe-ecCCCeEEEEEecCCC
Q 008356           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRP---SSCI-TYEAPFSSLAFIDDDW  135 (568)
Q Consensus        61 tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr-t~~~---v~~~-~h~~~ItsLafsPdg~  135 (568)
                      .|..||.. +.  ...+..+...++.++|+|+++.+++...++.|++||+. +++.   ...+ .+...+..++++++|+
T Consensus       154 ~l~~~~~~-g~--~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          154 WVFRLAPD-GT--LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EEEEECTT-SC--EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             EEEEECCC-CC--EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            56555554 33  44455667778999999999998777788999999997 4544   2222 2345577899999998


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEE-ccCCCeEEE
Q 008356          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCW-QRAKPVFID  184 (568)
Q Consensus       136 ~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLaf-spdg~~Las  184 (568)
                      ++++.  ++.|.+||.+..  .+..+.  .+.. +.+++| .++++.|..
T Consensus       231 l~v~~--~~~v~~~~~~g~--~~~~~~--~~~~-~~~~~f~~~d~~~L~v  273 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPDGD--ELGRVL--TPQT-TSNLCFGGPEGRTLYM  273 (296)
T ss_dssp             EEEEE--TTEEEEECTTSC--EEEEEE--CSSC-CCEEEEESTTSCEEEE
T ss_pred             EEEEc--CCeEEEECCCCC--EEEEEE--CCCC-ceeEEEECCCCCEEEE
Confidence            76666  889999998743  344444  3445 889999 466554433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.07  E-value=1.3e-08  Score=115.01  Aligned_cols=198  Identities=10%  Similarity=0.048  Sum_probs=133.8

Q ss_pred             CccCCCCEEEEEECCCc----------------EEEEECCCCcee--EEeeCC-CCCcEEEEEEccCCCeEEEEEeC---
Q 008356            1 MYNCKDEHLASISLSGD----------------LILHNLASGAKA--AELKDP-NEQVLRVLDYSRNSRHLLVTAGD---   58 (568)
Q Consensus         1 afSpdG~~LasGs~DG~----------------V~VWDl~tg~~v--~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~---   58 (568)
                      +|+|||+.|+.+..++.                |++|++.+++..  ..+... +...+..+.|+|+|+.++++...   
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            48999999999988765                999999887632  223322 34456779999999955555442   


Q ss_pred             -CCeEEEEECCC------CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCce---eeEeecCC-
Q 008356           59 -DGTLHLWDTTG------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRP---SSCITYEA-  123 (568)
Q Consensus        59 -DGtV~VWDl~t------~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D----GtV~IWDlrt~~~---v~~~~h~~-  123 (568)
                       +..|++||+.+      +......+..+...+.. .|+++++.|+..+.+    ..|.+||+.++..   ...+.+.. 
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  335 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK  335 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             CccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence             56899999976      43224556666666655 488888887776653    3699999988742   33444433 


Q ss_pred             -CeEEEEEecCCCEEEEEEcCCe--EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCC
Q 008356          124 -PFSSLAFIDDDWILTAGTSNGR--VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG  200 (568)
Q Consensus       124 -~ItsLafsPdg~~LasGs~DG~--V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~D  200 (568)
                       .+..++|.+++.++++...|+.  |.+||+.++. ....+.  .+.+.|..+.++++++.++...        -+....
T Consensus       336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~--~~~~~v~~~~~s~d~~~l~~~~--------ss~~~P  404 (710)
T 2xdw_A          336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-LLKIFP--LEVGSVVGYSGQKKDTEIFYQF--------TSFLSP  404 (710)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-EEEEEC--CCSSEEEEEECCTTCSEEEEEE--------ECSSCC
T ss_pred             CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-EEEecC--CCCceEEEEecCCCCCEEEEEE--------eCCCCC
Confidence             5888999987888888888885  5667775543 334444  4567788899988765544321        111236


Q ss_pred             CcEEcCCCCC
Q 008356          201 DSILMPDPLP  210 (568)
Q Consensus       201 g~V~VWDlr~  210 (568)
                      +.|++||+..
T Consensus       405 ~~i~~~d~~t  414 (710)
T 2xdw_A          405 GIIYHCDLTK  414 (710)
T ss_dssp             CEEEEEETTS
T ss_pred             CEEEEEECCC
Confidence            7788888754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.06  E-value=7.5e-09  Score=104.65  Aligned_cols=158  Identities=12%  Similarity=0.130  Sum_probs=109.4

Q ss_pred             CccCCCCEEEEEECC---------------------------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEE
Q 008356            1 MYNCKDEHLASISLS---------------------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLL   53 (568)
Q Consensus         1 afSpdG~~LasGs~D---------------------------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lL   53 (568)
                      +|+|||+.|+.++.+                           ..|++||+.+++.+..+.. .  .+..+.|+|++  ++
T Consensus       110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg--~~  184 (347)
T 2gop_A          110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK--IV  184 (347)
T ss_dssp             EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE--EE
T ss_pred             eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe--EE
Confidence            489999999887642                           5799999988876455554 2  56778999998  67


Q ss_pred             EEEeCCC-------eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeeE
Q 008356           54 VTAGDDG-------TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSC  118 (568)
Q Consensus        54 aTgs~DG-------tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D--------GtV~IWDlrt~~~v~~  118 (568)
                      +++..++       ...||.+++++  ...+..+ ..+..+  +|++++|+.++.+        ..|++||  +++....
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWEDGK--EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEETTE--EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             EEEecccccccccccccEEEeCCCc--eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence            7666542       34455444333  3444444 555554  8999998887754        3788888  5554444


Q ss_pred             e-ecCCCeEE-EEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          119 I-TYEAPFSS-LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       119 ~-~h~~~Its-LafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      . .+...+.. +.|+ ++ +++++..++.++|| +..+ +....+   .+...|.+++|++
T Consensus       258 ~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~~~~~---~~~~~v~~~~~s~  311 (347)
T 2gop_A          258 LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EIKPIA---KGRHWIMGFDVDE  311 (347)
T ss_dssp             STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-SEEEEE---CSSSEEEEEEESS
T ss_pred             cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ceEEEe---cCCCeEEeeeeeC
Confidence            3 34566775 8999 88 88999999999999 8733 333332   4567899999988

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.06  E-value=5.9e-08  Score=95.15  Aligned_cols=187  Identities=9%  Similarity=0.001  Sum_probs=130.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +.++|+++++...++.|..||.. ++. ..+... ....+..+++.+++. ++++...++.|.+||. ++.........+
T Consensus        64 ~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           64 ISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             ECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            46788877766667889999975 443 333321 345678899999886 6777667889999998 444222223335


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ...+.++++.++++++++...++.|.+||. +++.... . .....+..++++++++++++...++.|.+||. +..  .
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~  215 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--I  215 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--E
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--E
Confidence            567899999999988887777889999999 6655433 2 23456889999999987776667889999999 442  2


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      ..+....+...+.+++++++|+..++            ...++.|.+||.
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~l~v~------------~~~~~~i~~~d~  253 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGIDLWFT------------EWGANKIGRLTS  253 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEE------------ETTTTEEEEEET
T ss_pred             EEEECCCCCCCceeEEECCCCCEEEe------------ccCCceEEEECC
Confidence            33332235567889999887654333            333667777775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.06  E-value=6.8e-08  Score=94.69  Aligned_cols=188  Identities=10%  Similarity=0.027  Sum_probs=129.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.++|+++++...++.|.+||.. ++............+..+++.+++. ++++...++.|..||... ......+....
T Consensus        22 ~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~   98 (299)
T 2z2n_A           22 VSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKKG-IIKEYTLPNPD   98 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTS-CEEEEECSSTT
T ss_pred             ECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCCC-cEEEEeCCCcC
Confidence            46788876665557899999987 5543322122346688899999987 666666688999999863 31122222345


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ..+.++++.++++++++...++.|.+||. +++.....  .....+..+++.++++++++...++.|.+||. +..  +.
T Consensus        99 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~  174 (299)
T 2z2n_A           99 SAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD--IT  174 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--EE
T ss_pred             CCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc--EE
Confidence            67999999999988888778889999998 55543322  23457899999999988777777889999998 432  22


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .+....+...+.+++++++|.+.            ++...++.|.+||.
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~l~------------v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDALW------------FVEIIGNKIGRITT  211 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEE------------EEETTTTEEEEECT
T ss_pred             EeeCCCCCCcceeEEECCCCCEE------------EEccCCceEEEECC
Confidence            22222344568889998865443            33334677888876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.00  E-value=1.1e-08  Score=116.19  Aligned_cols=188  Identities=13%  Similarity=-0.004  Sum_probs=120.7

Q ss_pred             CccCCCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--------------e
Q 008356            1 MYNCKDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--------------T   61 (568)
Q Consensus         1 afSpdG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--------------t   61 (568)
                      +|+|||++||.+..+     ..|++||+.+++.+....  +...+..++|+|+ +. |+.+..|+              .
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SE-EEEEECCCC--------CCCCCE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CE-EEEEEecCcccccccccCCCCCE
Confidence            489999999887653     359999999998765322  1111246889999 74 54444443              3


Q ss_pred             EEEEECCCCCce-eEEec--cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC--c-eeeEeecCCCeEEEEE
Q 008356           62 LHLWDTTGRSPK-VSWLK--QHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGSR--R-PSSCITYEAPFSSLAF  130 (568)
Q Consensus        62 V~VWDl~t~~~~-v~~l~--~H~~~VtslafsPdg~~LaSgs~DG-----tV~IWDlrt~--~-~v~~~~h~~~ItsLaf  130 (568)
                      |++|++.+.... .....  .+...+..+.|+|||++|+....++     .|++||+.++  + ......+...+.... 
T Consensus       245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-  323 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-  323 (741)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-
T ss_pred             EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-
Confidence            999999765421 22222  3334689999999999988877544     8999999877  4 444444444454443 


Q ss_pred             ecCCCEEEEEEc----CCeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356          131 IDDDWILTAGTS----NGRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM  205 (568)
Q Consensus       131 sPdg~~LasGs~----DG~V~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V  205 (568)
                      .|+|+.|+..+.    ++.|.+||+.+.. ....++.  .+...+..++|. +            +.++++...|+..++
T Consensus       324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~-~------------~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA-G------------NRLFASYIHDAKSQV  388 (741)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE-B------------TEEEEEEEETTEEEE
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE-C------------CEEEEEEEECCEEEE
Confidence            488888888776    4559999988742 2223332  344456666665 2            234445555776666


Q ss_pred             CCC
Q 008356          206 PDP  208 (568)
Q Consensus       206 WDl  208 (568)
                      |.+
T Consensus       389 ~~~  391 (741)
T 1yr2_A          389 LAF  391 (741)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.99  E-value=8.9e-09  Score=116.07  Aligned_cols=197  Identities=11%  Similarity=0.061  Sum_probs=127.2

Q ss_pred             CccCCCCEEEEEECCCc-------------EEEEECCCCce--eEEeeCC-CCCcEEEEEEccCCCeEEEEEeCC-C--e
Q 008356            1 MYNCKDEHLASISLSGD-------------LILHNLASGAK--AAELKDP-NEQVLRVLDYSRNSRHLLVTAGDD-G--T   61 (568)
Q Consensus         1 afSpdG~~LasGs~DG~-------------V~VWDl~tg~~--v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~D-G--t   61 (568)
                      +|+|||+.|+.++.|..             |++|++.+++.  ...+... +...+..+.|+|+|+.++++...+ +  .
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND  253 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence            48999999999988776             99999988762  2233321 334677899999998555544443 2  5


Q ss_pred             EEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCce---eeEeec--CCCeEEEEEecC
Q 008356           62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRP---SSCITY--EAPFSSLAFIDD  133 (568)
Q Consensus        62 V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs---~DGtV~IWDlrt~~~---v~~~~h--~~~ItsLafsPd  133 (568)
                      |++||..++.  ...+..+...+....| +++.+++...   .++.|.+||+.+++.   ...+.+  ...+..++|. +
T Consensus       254 l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~  329 (695)
T 2bkl_A          254 VYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G  329 (695)
T ss_dssp             EEEECTTCSS--CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred             EEEEcCCCCc--eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence            6666654444  4455566666777777 5555444443   257999999987753   344443  4457888888 6


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       134 g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +.++++...|+..+||.++........+. ..+.+.|..+.++++++.++..        .-+....+.|++||+..
T Consensus       330 ~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~--------~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          330 GHLSLEYLKDATSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYV--------FTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             TEEEEEEEETTEEEEEEEETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEE--------EEETTEEEEEEEEETTT
T ss_pred             CEEEEEEEECCEEEEEEEeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEE--------EcCCCCCCEEEEEECCC
Confidence            77888889999888876652222223332 1235667778888876555433        11222357788888754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.98  E-value=1.4e-07  Score=104.89  Aligned_cols=194  Identities=14%  Similarity=0.076  Sum_probs=136.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECC--CCceeEEeeCCCCCcEEEEEEc----cCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356            1 MYNCKDEHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYS----RNSRHLLVTAGDDGTLHLWDTTGRSPKV   74 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~--tg~~v~~l~~~h~~~Vs~Lafs----pdg~~lLaTgs~DGtV~VWDl~t~~~~v   74 (568)
                      .|+|||++|++++.|+.|.+||+.  +++.+..+..  ......++|+    |+|+.++++...++.|.|+|..+.+. +
T Consensus       203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~  279 (567)
T 1qks_A          203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-K  279 (567)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-E
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-E
Confidence            379999999999999999999996  8888888874  3345679999    69996666666789999999988774 3


Q ss_pred             EEecc----------CCC-CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcee--eEeecCCCeEEEEEecCCCEEEEE
Q 008356           75 SWLKQ----------HSA-PTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        75 ~~l~~----------H~~-~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v--~~~~h~~~ItsLafsPdg~~LasG  140 (568)
                      ..+..          |.. .+..+..++++. +++....+|.|.++|....+.+  ..+........+.|+|++++|+++
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va  359 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  359 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence            33321          222 678888888654 4556667899999999876433  334456667889999999998776


Q ss_pred             E-cCCeEEEEECCCCCCceEEEee---cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec-CCCcEEcCCCCC
Q 008356          141 T-SNGRVVFYDIRGKPQPLTVLRA---CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLP  210 (568)
Q Consensus       141 s-~DG~V~VWDlrt~~~~v~~l~~---~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s-~Dg~V~VWDlr~  210 (568)
                      . .++.|.++|+.+.+ ....+..   ..|.+....+ ++|++           +.++++.. .++.|.++|..+
T Consensus       360 ~~~sn~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~-~~p~~-----------g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          360 ANARNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTF-----------GPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EGGGTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTT-----------EEEEEEEBSSSSEEEEEECCT
T ss_pred             eCCCCeEEEEECCCCc-EEEEEeccCcCCCCccceee-ECCCC-----------CcEEEeCCCCCCeEEEecCCC
Confidence            6 57899999999873 3343432   1243322222 46642           23333333 368899998876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.96  E-value=3.9e-08  Score=97.69  Aligned_cols=191  Identities=13%  Similarity=0.153  Sum_probs=125.7

Q ss_pred             CccCCCCEEEE-------EECCCcEEEEECCCCceeEEee---CCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCC
Q 008356            1 MYNCKDEHLAS-------ISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG   69 (568)
Q Consensus         1 afSpdG~~Las-------Gs~DG~V~VWDl~tg~~v~~l~---~~h~~~Vs~Lafspd-g~~lLaTgs~DGtV~VWDl~t   69 (568)
                      +|.++|+++++       +..++.|.+||..+++......   ..+...+..++++++ ++ +++ +..++.|.+||.. 
T Consensus        24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v-~~~~~~l~~~d~~-  100 (314)
T 1pjx_A           24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFV-ADMRLGLLVVQTD-  100 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEE-EETTTEEEEEETT-
T ss_pred             eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEE-EECCCCEEEEeCC-
Confidence            36788887777       5678899999988877543221   012345788999998 64 444 4444579999988 


Q ss_pred             CCceeEEe-cc-----CCCCeEEEEEcCCCCEEEEEeCC---------------CeEEEEECCCCceeeEeecCCCeEEE
Q 008356           70 RSPKVSWL-KQ-----HSAPTAGISFSSDDKIIASVGLD---------------KKLYTYDPGSRRPSSCITYEAPFSSL  128 (568)
Q Consensus        70 ~~~~v~~l-~~-----H~~~VtslafsPdg~~LaSgs~D---------------GtV~IWDlrt~~~v~~~~h~~~ItsL  128 (568)
                      ++  ...+ ..     ....++++++.++++++++...+               +.|..||.. ++.............+
T Consensus       101 g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i  177 (314)
T 1pjx_A          101 GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEE
T ss_pred             CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceE
Confidence            54  2323 21     12458899999999888777655               578888876 5554444445567899


Q ss_pred             EEe----cCCCEEEEE-EcCCeEEEEECCCCCCc--eEEEee-cCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEecC
Q 008356          129 AFI----DDDWILTAG-TSNGRVVFYDIRGKPQP--LTVLRA-CSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (568)
Q Consensus       129 afs----Pdg~~LasG-s~DG~V~VWDlrt~~~~--v~~l~~-~~h~-~~VtsLafspdg~~Las~s~ssd~~~Lls~s~  199 (568)
                      +|+    ++++.|+++ ..++.|.+||++.....  ...+.. ..+. ..+..++++++|++++            +...
T Consensus       178 ~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v------------~~~~  245 (314)
T 1pjx_A          178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV------------ANWG  245 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE------------EEET
T ss_pred             EEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE------------EEcC
Confidence            999    999766655 46789999998621111  112221 1233 5678888888765443            3334


Q ss_pred             CCcEEcCCCC
Q 008356          200 GDSILMPDPL  209 (568)
Q Consensus       200 Dg~V~VWDlr  209 (568)
                      ++.|.+||..
T Consensus       246 ~~~i~~~d~~  255 (314)
T 1pjx_A          246 SSHIEVFGPD  255 (314)
T ss_dssp             TTEEEEECTT
T ss_pred             CCEEEEEcCC
Confidence            7788999875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.95  E-value=7.6e-08  Score=95.61  Aligned_cols=190  Identities=15%  Similarity=0.170  Sum_probs=123.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEE-eeC---CCCCcEEEEEEccCCCeEEEEEeCC---------------CeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAE-LKD---PNEQVLRVLDYSRNSRHLLVTAGDD---------------GTL   62 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~-l~~---~h~~~Vs~Lafspdg~~lLaTgs~D---------------GtV   62 (568)
                      +++++..|.++..++.|.+||.. ++.... ...   .....+.++++.++++ ++++...+               +.|
T Consensus        78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l  155 (314)
T 1pjx_A           78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeE
Confidence            46672344445555579999987 665432 221   1123477899999987 66665544               567


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEc----CCCCEEEEE-eCCCeEEEEECC-CCcee-----eEee-cC-CCeEEEE
Q 008356           63 HLWDTTGRSPKVSWLKQHSAPTAGISFS----SDDKIIASV-GLDKKLYTYDPG-SRRPS-----SCIT-YE-APFSSLA  129 (568)
Q Consensus        63 ~VWDl~t~~~~v~~l~~H~~~Vtslafs----Pdg~~LaSg-s~DGtV~IWDlr-t~~~v-----~~~~-h~-~~ItsLa  129 (568)
                      ..||.. ++  ...+..+......++|+    ++++.|+.+ ..++.|.+||+. +++..     ..+. +. ..+..++
T Consensus       156 ~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          156 YCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             EEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence            777765 33  23333344557899999    998766555 567899999986 44321     1121 22 5578999


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ++++|+++++...++.|.+||.++.. ....+.  .+...+.+++|+++++.|           +++...++.|..||+.
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~-~~~~~~--~~~~~~~~i~~~~dg~~l-----------~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIR--CPFEKPSNLHFKPQTKTI-----------FVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBS-CSEEEE--CSSSCEEEEEECTTSSEE-----------EEEETTTTEEEEEECS
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCc-EeEEEe--CCCCCceeEEECCCCCEE-----------EEEeCCCCeEEEEeCC
Confidence            99999988888888999999998543 234444  345778999998876533           3334446788888765


Q ss_pred             C
Q 008356          210 P  210 (568)
Q Consensus       210 ~  210 (568)
                      .
T Consensus       299 ~  299 (314)
T 1pjx_A          299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.94  E-value=3.4e-07  Score=89.74  Aligned_cols=187  Identities=7%  Similarity=-0.030  Sum_probs=127.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +.++|++.++...++.|.+||.. ++.. .+.. .....+..+++.+++. ++++...++.|..||.. ++.....+...
T Consensus        69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~  144 (300)
T 2qc5_A           69 VSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNK  144 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSST
T ss_pred             ECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCC
Confidence            45677766666557889999987 6543 3332 1335678899999887 67766668899999987 44222223334


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ...+.++++.++++++++...++.|..||. +++.....  .....+..+++.++|+++++....+.|.+||....   .
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~---~  220 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE---I  220 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC---E
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc---E
Confidence            567899999999997777767889999998 55544322  23456889999999987777667788999998322   2


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      ..+....+...+.+++++++|+..            ++...++.|..||.
T Consensus       221 ~~~~~~~~~~~~~~i~~d~~g~l~------------v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          221 SEYDIPTPNARPHAITAGKNSEIW------------FTEWGANQIGRITN  258 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEE------------EEETTTTEEEEECT
T ss_pred             EEEECCCCCCCceEEEECCCCCEE------------EeccCCCeEEEECC
Confidence            222222345668899998875543            33333577777776

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.94  E-value=3.7e-07  Score=89.44  Aligned_cols=188  Identities=7%  Similarity=-0.054  Sum_probs=128.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +.++|++.++...++.|.+||.. ++............+..+++.+++. ++++...++.|.+||.. +...........
T Consensus        27 ~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~  103 (300)
T 2qc5_A           27 SSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGFTEYPLPQPD  103 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTT
T ss_pred             ECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCeEEecCCCCC
Confidence            45778877766668899999987 5544322222335678899999887 66666668899999987 442222233344


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-ee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-IT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ..+.++++.++++++++...++.|..||.. ++.... +. ....+..+++.++++++++...++.|.+||.. .. . .
T Consensus       104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~-~  179 (300)
T 2qc5_A          104 SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-L-E  179 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-E-E
T ss_pred             CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-E-E
Confidence            679999999999988887778899999987 554432 22 34678999999999966666667899999983 32 2 2


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .+....+...+.+++++++|.+.++            ....+.|.+||.
T Consensus       180 ~~~~~~~~~~~~~i~~d~~g~l~v~------------~~~~~~i~~~~~  216 (300)
T 2qc5_A          180 EYPLPTNAAAPVGITSGNDGALWFV------------EIMGNKIGRITT  216 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEE------------ETTTTEEEEECT
T ss_pred             EeeCCCCCCCcceEEECCCCCEEEE------------ccCCCEEEEEcC
Confidence            2332234456888998886544333            333566777775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.85  E-value=1.9e-07  Score=99.21  Aligned_cols=189  Identities=8%  Similarity=0.026  Sum_probs=125.2

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEe-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWL-   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l-   77 (568)
                      +|+++++++++...++.|++||+.+++....... . .... ++|+++++ .|+.+..++  .|++||..+... ...+ 
T Consensus       137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~-~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~-~~~~g  211 (409)
T 3hrp_A          137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-F-KGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWA-PTRIG  211 (409)
T ss_dssp             EECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-C-CBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTC-EEEEE
T ss_pred             EEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-C-CCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCce-eEEee
Confidence            3678888666666678999999987776555543 2 2334 89999998 677777655  799999876543 2222 


Q ss_pred             ---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE----e-ecCCCe--EEEEEecC-CCEEEEEEcCCeE
Q 008356           78 ---KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC----I-TYEAPF--SSLAFIDD-DWILTAGTSNGRV  146 (568)
Q Consensus        78 ---~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~----~-~h~~~I--tsLafsPd-g~~LasGs~DG~V  146 (568)
                         ......+.+++++|++..|+.+..++.|+.||..++.....    . ......  ..++|+|+ +.++++-..++.|
T Consensus       212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I  291 (409)
T 3hrp_A          212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV  291 (409)
T ss_dssp             ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred             eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence               22556788999999555566677889999999987764332    1 111112  39999995 5555555678899


Q ss_pred             EEEECCCCCCceEEEeecC-------------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEec-CCCcEEcCCCC
Q 008356          147 VFYDIRGKPQPLTVLRACS-------------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPL  209 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~-------------h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s-~Dg~V~VWDlr  209 (568)
                      +.|+....   ...+....             .-.....++++++|.++            ++.. .+..|+.||+.
T Consensus       292 ~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly------------vad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          292 YKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY------------IVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE------------EEETTTTCEEEEEETT
T ss_pred             EEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE------------EEeCCCCCEEEEEECC
Confidence            99998764   22332111             02347889998876543            3344 57788888753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.84  E-value=1.3e-07  Score=95.24  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=115.0

Q ss_pred             CccCCCC-EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+++|+ ++++...++.|..|+. +++. ..+.. ....+..++++++|+ ++++...++.|.+||.+ +.  ...+..
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~-~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~--~~~~~~  123 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLD-ATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ--AHLLVG  123 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEE-SCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC--EEEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeC-CCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC--EEEEEe
Confidence            3788998 4555566889999997 5553 34443 445678899999997 66655566889999986 33  222221


Q ss_pred             C-----CCCeEEEEEcCCCCEEEE----EeC-------------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEE
Q 008356           80 H-----SAPTAGISFSSDDKIIAS----VGL-------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        80 H-----~~~VtslafsPdg~~LaS----gs~-------------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~L  137 (568)
                      +     ...++++++.++++++++    +..             .+.|+.||..+++..... .......++|+|+++.|
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~l  202 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTL  202 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEE
Confidence            1     234778999999998886    332             356888888777655444 44567889999999988


Q ss_pred             EEEEcC------CeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeE
Q 008356          138 TAGTSN------GRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       138 asGs~D------G~V~VWDlrt~~~-~v~~l~~~~h~~~VtsLafspdg~~L  182 (568)
                      +++...      +.|.+||+..... ....+.. ...+....++++++|++.
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lw  253 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLW  253 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEE
T ss_pred             EEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEE
Confidence            887765      7899999875420 0111111 123445567787776533

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.83  E-value=4.8e-07  Score=90.75  Aligned_cols=175  Identities=13%  Similarity=0.083  Sum_probs=115.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC---CCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTG   69 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~---h~~~Vs~Lafspdg~~lLaTgs~---------DGtV~VWDl~t   69 (568)
                      ++++|++++ +. ++.|.+||.++++........   ....+++++++++|+ ++++...         .....||.++.
T Consensus        61 ~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           61 LRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             ECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEEC
Confidence            678898554 44 567999999877654333221   124578899999998 5554322         13345555543


Q ss_pred             CCceeEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC--CCCcee--eEe----ecCCCeEEEEEecCCCEEEEE
Q 008356           70 RSPKVSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDP--GSRRPS--SCI----TYEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        70 ~~~~v~~l~~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDl--rt~~~v--~~~----~h~~~ItsLafsPdg~~LasG  140 (568)
                      ... ...+..+....+.++|+|+++.|+ +...++.|.+||+  .++...  ..+    .....+..++++++|++.++.
T Consensus       138 ~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          138 DHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             TSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             CCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            221 233334445678999999998765 4456789999987  455432  122    123567899999999888888


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc-cCCCeEE
Q 008356          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ-RAKPVFI  183 (568)
Q Consensus       141 s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafs-pdg~~La  183 (568)
                      ..++.|.+||.++++ .+..+.  .+...+++++|. |+++.|.
T Consensus       217 ~~~~~v~~~d~~tG~-~~~~i~--~p~~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          217 YNGGRVIRLDPVTGK-RLQTVK--LPVDKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             ETTTEEEEECTTTCC-EEEEEE--CSSSBEEEEEEESGGGCEEE
T ss_pred             cCCCEEEEEcCCCce-EEEEEE--CCCCCceEEEEeCCCCCEEE
Confidence            788899999998663 344444  345679999998 7655543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.82  E-value=8.5e-07  Score=88.96  Aligned_cols=190  Identities=9%  Similarity=0.047  Sum_probs=120.3

Q ss_pred             ccCCCCEE-EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 008356            2 YNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-   79 (568)
Q Consensus         2 fSpdG~~L-asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-   79 (568)
                      |+++++.| ++...++.|+.||..+++. ..+.  ....+.+++++++++ ++++ . ++.|.+||..+++.  ..+.. 
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~~--~~~~~~   91 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT--MDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQSA--VVLATV   91 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCE-EEEE--CSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTEE--EEEEEC
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcE-EEEe--CCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCcE--EEEEec
Confidence            77865554 4445678999999987765 3343  345788999999998 5554 3 56899999987652  22221 


Q ss_pred             ----CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE-EcC
Q 008356           80 ----HSAPTAGISFSSDDKIIASVGL-----------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSN  143 (568)
Q Consensus        80 ----H~~~VtslafsPdg~~LaSgs~-----------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG-s~D  143 (568)
                          ....+++++++|+++++++...           .+.|+.+|.. ++...........+.++|+|+++.|++. +.+
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~  170 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS  170 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence                1235889999999997765432           2345555543 3433334444567899999999877554 557


Q ss_pred             CeEEEEECC--CCCCc-eEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          144 GRVVFYDIR--GKPQP-LTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       144 G~V~VWDlr--t~~~~-v~~l~~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      +.|.+||+.  ++... .+.+... .+...+..++++++|++.++            ...++.|.+||.....
T Consensus       171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva------------~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA------------CYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE------------EETTTEEEEECTTTCC
T ss_pred             CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE------------EcCCCEEEEEcCCCce
Confidence            899999974  33110 1222211 23356788888887654433            3346678888875433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.80  E-value=1.2e-06  Score=89.45  Aligned_cols=186  Identities=13%  Similarity=0.035  Sum_probs=118.7

Q ss_pred             CccCCCCEE-EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~L-asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+++++.| ++...++.|.+||..+++.. .+.  ....+.+++|.++++ ++++ ..+ .|.+||..+++.  ..+..
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~-l~v~-~~~-gl~~~d~~~g~~--~~~~~  126 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSK-QLIA-SDD-GLFLRDTATGVL--TLHAE  126 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTE-EEEE-ETT-EEEEEETTTCCE--EEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCe-EEEE-ECC-CEEEEECCCCcE--EEEee
Confidence            377876554 45556789999998776543 343  235688999999987 4554 444 499999877662  22221


Q ss_pred             C-----CCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE-cCCeEE
Q 008356           80 H-----SAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVV  147 (568)
Q Consensus        80 H-----~~~VtslafsPdg~~LaSgs~------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~  147 (568)
                      .     ...+++++++++++++++...      .+.|..+|  +++.............++|+|+++.|+.+. .++.|.
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence            1     235899999999997765542      35677777  455443334445678999999998776654 568999


Q ss_pred             EEECC--CC-CC-ceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          148 FYDIR--GK-PQ-PLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       148 VWDlr--t~-~~-~v~~l~~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +||++  ++ .. ....+... .....+..++++++|.+.++            ...++.|.+||.
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva------------~~~~~~v~~~d~  258 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA------------RWGEGAVDRYDT  258 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE------------EETTTEEEEECT
T ss_pred             EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE------------EeCCCEEEEECC
Confidence            99986  33 11 11222211 23455677888876654333            333567777776

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.77  E-value=3e-07  Score=104.49  Aligned_cols=198  Identities=13%  Similarity=0.108  Sum_probs=125.9

Q ss_pred             CccCCCCEEEEEECCCc--------------EEEEECCCCce--eEEeeCC-CCCcEEEEEEccCCCeEEEEEeC----C
Q 008356            1 MYNCKDEHLASISLSGD--------------LILHNLASGAK--AAELKDP-NEQVLRVLDYSRNSRHLLVTAGD----D   59 (568)
Q Consensus         1 afSpdG~~LasGs~DG~--------------V~VWDl~tg~~--v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~----D   59 (568)
                      +|+|| +.|+.+..++.              |++|++.++..  ...+... +...+..+.|+|+|+.+++++..    +
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  293 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV  293 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence            48999 99988877654              89999977652  2233321 22347789999999855554432    3


Q ss_pred             CeEEEEECCCCCce-eEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCC--ceeeEee-cCCCeEEEEEe
Q 008356           60 GTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLD----KKLYTYDPGSR--RPSSCIT-YEAPFSSLAFI  131 (568)
Q Consensus        60 GtV~VWDl~t~~~~-v~~l~~H~~~VtslafsPdg~~LaSgs~D----GtV~IWDlrt~--~~v~~~~-h~~~ItsLafs  131 (568)
                      ..|++||+.++... ...+..+...+.... .|+++.|+..+.+    +.|.+||+.++  +....+. +...+..++|.
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence            48999999776212 344555555555554 4888888877753    46999999874  3344443 33446677887


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          132 DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       132 Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                       ++.++++...|+..+||.++........+. ..+.+.|..+.++++++.++..        .-+....+.|++||+..
T Consensus       373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~--------~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-LPGIGSASGLSGRPGDRHAYLS--------FSSFTQPATVLALDPAT  441 (741)
T ss_dssp             -BTEEEEEEEETTEEEEEEEETTSCEEEECB-CSSSCEEEEEECCBTCSCEEEE--------EEETTEEEEEEEEETTT
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCceeecc-CCCCeEEEEeecCCCCCEEEEE--------EcCCCCCCEEEEEECCC
Confidence             567788888899877775542222233333 1245678889999987655433        11223357788888754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.75  E-value=6e-08  Score=102.96  Aligned_cols=124  Identities=12%  Similarity=0.060  Sum_probs=97.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      |+++|+++ .++.|++||+.+......+.. +...+.++.+.+.  + ++++..||.|.+||+..... ..    +...|
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~-~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~-~~----~~~~V  165 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELSEFRTVTS-FEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKST-KQ----LAQNV  165 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTTCEEEEEE-CSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCE-EE----EEESE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhhccCccce-eecceeeEEecCC--C-EEEEECCCCEEEEEccCCcc-cc----ccCCc
Confidence            78899998 889999999987665444444 4455777777754  2 78889999999999987663 21    44679


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeEe------e----cCCCeEEEEEecCCCEEEEE
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCI------T----YEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~--v~~~------~----h~~~ItsLafsPdg~~LasG  140 (568)
                      +|++|+|+|  ++.|..||++++|+...++.  ...+      .    |...|.++.|.+++.++++=
T Consensus       166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            999999999  78899999999999887775  4455      2    56789999999998888763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.75  E-value=1.8e-09  Score=113.01  Aligned_cols=186  Identities=11%  Similarity=0.048  Sum_probs=97.4

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-CC
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-AP   83 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-~~   83 (568)
                      ++..|++++.||.|+.||..+|+.+..+..   ..+.+..+..++. ++++++.||.|+.||..+++.... +..+. ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~-~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTK-LPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEE-CSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeee-eeccCccc
Confidence            578899999999999999999999888875   2233334455665 677778999999999977764322 22221 11


Q ss_pred             eE-EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356           84 TA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus        84 Vt-slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~  162 (568)
                      +. ...+ .++..+++++.|+.|+.||.++++.+..+.....   ..++|++..|++++.|+.|+.||.++++.....-.
T Consensus        83 ~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           83 VQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             cccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence            10 0011 1345678888899999999999998877643332   34566888999999999999999998754333211


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       163 ~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       ..    .....+..+.        ..++. ++.++.|+.|+.||.+....
T Consensus       159 -~~----~~~~~~~~~~--------~~~~~-v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          159 -FD----YAASLPEDDV--------DYKMS-HFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             -EE----ECCBCCCCCT--------TCCCC-EEEEETSCEEEEECTTTCCE
T ss_pred             -cc----ccCccccCCc--------cccce-EEEECCCCEEEEEECCCCcE
Confidence             00    1111111110        01123 44455689999999876543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.75  E-value=8.8e-07  Score=94.02  Aligned_cols=191  Identities=10%  Similarity=0.062  Sum_probs=123.0

Q ss_pred             CccCCCCEEEEEECCC--cEEEEECCCCceeEEe---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            1 MYNCKDEHLASISLSG--DLILHNLASGAKAAEL---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG--~V~VWDl~tg~~v~~l---~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      +|+++++.|+++..++  .|.+|+...+.....+   .......+.+++++|++..+++ +..++.|+.||..+......
T Consensus       177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEE
T ss_pred             eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEE
Confidence            4788999999888766  7999998765543333   1213455677999995553444 77789999999987652211


Q ss_pred             E---eccCCCCe--EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeEeecC---------------CCeEEEEEecCC
Q 008356           76 W---LKQHSAPT--AGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCITYE---------------APFSSLAFIDDD  134 (568)
Q Consensus        76 ~---l~~H~~~V--tslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---------------~~ItsLafsPdg  134 (568)
                      .   ..++...-  ..++|+|+ +.++++-..++.|+.||.... ......+.               .....++++++|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            0   12222222  39999994 666666667889999997644 32222322               347899999999


Q ss_pred             CEEEEEE-cCCeEEEEECCCCCCceEEEeec-C------------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCC
Q 008356          135 WILTAGT-SNGRVVFYDIRGKPQPLTVLRAC-S------------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG  200 (568)
Q Consensus       135 ~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~-~------------h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~D  200 (568)
                      +++++-. .++.|++||+..+.  +..+... .            .-.....++++++|.+            +++...+
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l------------yVad~~n  400 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY------------WIAEAWG  400 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE------------EEEESTT
T ss_pred             CEEEEeCCCCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE------------EEEECCC
Confidence            9777777 78999999976552  2333211 0            0245788888886443            4444445


Q ss_pred             CcEEcCC
Q 008356          201 DSILMPD  207 (568)
Q Consensus       201 g~V~VWD  207 (568)
                      +.|+.++
T Consensus       401 ~~Ir~i~  407 (409)
T 3hrp_A          401 KAIRKYA  407 (409)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            6666544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.74  E-value=1.7e-06  Score=90.75  Aligned_cols=193  Identities=10%  Similarity=-0.015  Sum_probs=127.6

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~--DG~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|+|||++|+++..  ++.|.++| .+++.+.. +..  ..   ++.+.++++..+++.+.||.+.++|. +++.. ...
T Consensus       131 ~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~  202 (373)
T 2mad_H          131 ANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAG  202 (373)
T ss_pred             EECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEE
Confidence            37899999999874  47899999 99998877 653  12   24556777667888889999999999 65532 111


Q ss_pred             c-----cCCCC-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeEee-----------cCCCeEEEEEecCCCEEE
Q 008356           78 K-----QHSAP-TAGISFSSDDKIIASVGLDKKLYTYDPGSRRP--SSCIT-----------YEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        78 ~-----~H~~~-VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~--v~~~~-----------h~~~ItsLafsPdg~~La  138 (568)
                      .     ....+ .....+.+++..++..+..+.|.+.|+.....  +..+.           .......++++++++.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            1     11122 12345666655555555788999999976532  22221           122344578999998888


Q ss_pred             EEEc----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          139 AGTS----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       139 sGs~----------DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~-~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      +...          ++.|.++|+.+.+ .+..+.   ......++.|+|+|+ .++++           ...++.|.+||
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~-vv~~i~---~g~~p~~i~~s~Dg~~~l~v~-----------~~~~~~V~ViD  347 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQIS---LGHDVDAISVAQDGGPDLYAL-----------SAGTEVLHIYD  347 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCE-EEEEEE---CCCCcCeEEECCCCCeEEEEE-----------cCCCCeEEEEE
Confidence            8654          3579999998873 334443   334688999999876 33332           22478999999


Q ss_pred             CCCCCcccc
Q 008356          208 PLPSVTTSS  216 (568)
Q Consensus       208 lr~~~~~~s  216 (568)
                      +........
T Consensus       348 ~~t~~vv~~  356 (373)
T 2mad_H          348 AGAGDQDQS  356 (373)
T ss_pred             CCCCCEEee
Confidence            887665433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.71  E-value=6.9e-07  Score=91.77  Aligned_cols=181  Identities=8%  Similarity=0.052  Sum_probs=119.3

Q ss_pred             ccCCCCEEEEEEC-----CCcEEEEECCCCceeEEeeCC-----CCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECC
Q 008356            2 YNCKDEHLASISL-----SGDLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTT   68 (568)
Q Consensus         2 fSpdG~~LasGs~-----DG~V~VWDl~tg~~v~~l~~~-----h~~~Vs~Lafspdg~~lLaTgs---~DGtV~VWDl~   68 (568)
                      |.++|+++++-..     ++.|.+||+.+++.+..+..+     +...+..+++++++..++++-.   .++.|.+||+.
T Consensus        74 ~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           74 SDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             ECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             EcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            5677765554332     578999999999877766532     1234578999987654566655   67899999997


Q ss_pred             CCCceeEEeccC-----------------------------CCCeEEEEEcCCCCEEEEEeCCC-eEEEEECC---CCc-
Q 008356           69 GRSPKVSWLKQH-----------------------------SAPTAGISFSSDDKIIASVGLDK-KLYTYDPG---SRR-  114 (568)
Q Consensus        69 t~~~~v~~l~~H-----------------------------~~~VtslafsPdg~~LaSgs~DG-tV~IWDlr---t~~-  114 (568)
                      +++. .+.+..|                             ...++.|+|+|+++.|+.+..++ .|..+|..   .+. 
T Consensus       154 ~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          154 TGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             TCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             CCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            6652 3333222                             12368899999999888887666 56666532   111 


Q ss_pred             -------eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          115 -------PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       115 -------~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                             .+....+......++++++|+++++...++.|.+||...+.  +..+....+...+.+++|.+++.++++.
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~--~~~~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA--YKLLVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE--EEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC--EEEEEECCceecCCeeEECCCCcEEEEe
Confidence                   01222344567789999999999998889999999984332  2222211234568899998876554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.71  E-value=2.6e-06  Score=86.85  Aligned_cols=170  Identities=13%  Similarity=0.070  Sum_probs=111.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC---CCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCCc
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD---PNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGRSP   72 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~---~h~~~Vs~Lafspdg~~lLaTgs~------DGtV~VWDl~t~~~   72 (568)
                      |+++|+++++. .+ .|.+||..+++.......   .....+.+++++++|+ ++++...      .+.|+.+|  +++ 
T Consensus        97 ~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~-  170 (326)
T 2ghs_A           97 KISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK-  170 (326)
T ss_dssp             EEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE-
T ss_pred             EeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc-
Confidence            56788766644 44 499999988875433221   1124588999999998 5554432      24566666  333 


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC--CC-cee--eEe-e---cCCCeEEEEEecCCCEEEEEEc
Q 008356           73 KVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPG--SR-RPS--SCI-T---YEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlr--t~-~~v--~~~-~---h~~~ItsLafsPdg~~LasGs~  142 (568)
                       ...+..+....+.++|+|+++.|+.+ ..++.|.+||+.  ++ +..  ..+ .   ....+..+++.++|++.++...
T Consensus       171 -~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~  249 (326)
T 2ghs_A          171 -VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG  249 (326)
T ss_dssp             -EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET
T ss_pred             -EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC
Confidence             33333344567899999999877555 457899999986  55 321  122 1   2345788999999988777767


Q ss_pred             CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc-cCCCeE
Q 008356          143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ-RAKPVF  182 (568)
Q Consensus       143 DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafs-pdg~~L  182 (568)
                      ++.|.+||...  +.+..+.  .+...+++++|. ++++.|
T Consensus       250 ~~~v~~~d~~g--~~~~~i~--~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          250 EGAVDRYDTDG--NHIARYE--VPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             TTEEEEECTTC--CEEEEEE--CSCSBEEEEEEESTTSCEE
T ss_pred             CCEEEEECCCC--CEEEEEE--CCCCCcEEEEEecCCCCEE
Confidence            78999999843  2344444  344579999998 765544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.67  E-value=7.4e-07  Score=100.66  Aligned_cols=176  Identities=13%  Similarity=0.053  Sum_probs=111.5

Q ss_pred             CccCCCCEEEEEEC-----CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-------------CeE
Q 008356            1 MYNCKDEHLASISL-----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-------------GTL   62 (568)
Q Consensus         1 afSpdG~~LasGs~-----DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-------------GtV   62 (568)
                      +|||||++||.+..     ...|++||+++++.+.....  ......++|+ |++. |+.+..+             ..|
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~~~~~~~~~v  210 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEG-FFYSSYDKPDGSELSARTDQHKV  210 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTE-EEEEESSCCC-------CCCCEE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-CCCE-EEEEEecCcccccccccCCCcEE
Confidence            48999999886432     24799999999986543211  1112457899 9985 5444544             349


Q ss_pred             EEEECCCCCce---eEEecc-CCCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--ceeeEeecCCCeEEEEEec
Q 008356           63 HLWDTTGRSPK---VSWLKQ-HSAPTAGISFSSDDKIIASVGL----DKKLYTYDPGSR--RPSSCITYEAPFSSLAFID  132 (568)
Q Consensus        63 ~VWDl~t~~~~---v~~l~~-H~~~VtslafsPdg~~LaSgs~----DGtV~IWDlrt~--~~v~~~~h~~~ItsLafsP  132 (568)
                      ++|++.+....   +..... |...+..+.|+||+++|+....    +..|+++|+.++  +......+....... |.+
T Consensus       211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~  289 (693)
T 3iuj_A          211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN  289 (693)
T ss_dssp             EEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE
T ss_pred             EEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec
Confidence            99999765422   222223 4556788999999998865432    358999999876  333334454444444 666


Q ss_pred             CCCEEEEEEc----CCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          133 DDWILTAGTS----NGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       133 dg~~LasGs~----DG~V~VWDlrt~~~-~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +|..|+..+.    .+.|.++|+.+... ..+.+.  .|...+.  .|++++++|+..
T Consensus       290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~  343 (693)
T 3iuj_A          290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAE  343 (693)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEE
Confidence            6666665543    36799999987632 123333  4555554  788877666544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.62  E-value=3.6e-06  Score=84.84  Aligned_cols=192  Identities=13%  Similarity=0.124  Sum_probs=127.8

Q ss_pred             ccCCCCEEEEEEC--CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |++++.+.++.+.  ++.|.++|+.+++.+..+..........+++.  ++.++++.-.++.|.++|..+.+. +..+..
T Consensus        28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v-~~~i~~  104 (266)
T 2iwa_A           28 YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN-IKNFTH  104 (266)
T ss_dssp             ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE-EEEEEC
T ss_pred             EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE-EEEEEC
Confidence            6777644444443  57999999999999888764333233345554  455666666789999999988764 444432


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC------CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE------APFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ....  ...+.+|++.++++..++.|.++|..+.+.+..+.-.      ..++.+.|. ++...+....++.|.+.|+.+
T Consensus       105 g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          105 QMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             CSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred             CCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence            2111  2335567777777778899999999998888776422      236788888 665544444678999999998


Q ss_pred             CCCceEEEeecC-----------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          154 KPQPLTVLRACS-----------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       154 ~~~~v~~l~~~~-----------h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      .+ .+..+...+           .......|+|+|+++           .+++++.....|.+.|+.+.
T Consensus       182 g~-V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-----------~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          182 GT-LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-----------RIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CC-EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-----------EEEEEETTCSEEEEEEEEEC
T ss_pred             Cc-EEEEEECCCcccccccccccccCceEEEEEcCCCC-----------EEEEECCCCCeEEEEEEecc
Confidence            74 455554211           113568999999754           44555666777777776553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.58  E-value=4.8e-06  Score=88.27  Aligned_cols=147  Identities=6%  Similarity=-0.044  Sum_probs=110.9

Q ss_pred             ccCCCCEEEEEEC-----CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEEC
Q 008356            2 YNCKDEHLASISL-----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDT   67 (568)
Q Consensus         2 fSpdG~~LasGs~-----DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---------~DGtV~VWDl   67 (568)
                      ..|+++.+++...     ++.|.++|..+++.+..+..... . . ++++|+++.++++..         .++.|.+||.
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            3588999888876     67999999999999998886433 3 4 899999996555542         4678999999


Q ss_pred             CCCCceeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEE
Q 008356           68 TGRSPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        68 ~t~~~~v~~l~~H-------~~~VtslafsPdg~~LaSgs~--DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~La  138 (568)
                      .+.+. +..+...       ......+.|+||+++++++..  ++.|.++|+.+++.+..+...+.  ...+....+.++
T Consensus       117 ~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          117 VTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF  193 (386)
T ss_dssp             TTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred             CCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence            98874 3333221       224667999999999988864  68999999999999888855431  233333456777


Q ss_pred             EEEcCCeEEEEECCCC
Q 008356          139 AGTSNGRVVFYDIRGK  154 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~  154 (568)
                      +.+.||.+.+.++...
T Consensus       194 ~~~~DG~~~~v~~~~~  209 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTE  209 (386)
T ss_dssp             EEETTSCEEEEECCSS
T ss_pred             EECCCCCEEEEECCCC
Confidence            8888999999999763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.57  E-value=1.4e-05  Score=83.74  Aligned_cols=206  Identities=11%  Similarity=0.022  Sum_probs=122.7

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEeeCC-C-----CCcEEEEEEccCCCeEEEEEe-C-CCeE
Q 008356            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDP-N-----EQVLRVLDYSRNSRHLLVTAG-D-DGTL   62 (568)
Q Consensus         1 afSpdG~~LasGs----------~DG~V~VWDl~tg~~v~~l~~~-h-----~~~Vs~Lafspdg~~lLaTgs-~-DGtV   62 (568)
                      +|+|||++|+++.          .++.|.+||..+.+.+..+... .     ......+.|+|+|+. |+++. . ++.|
T Consensus        72 ~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~-l~v~n~~~~~~v  150 (373)
T 2mad_H           72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD-LLFFQFAAGPAV  150 (373)
T ss_pred             EECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE-EEEEecCCCCeE
Confidence            4799999999886          3678999999998888777542 0     122356899999994 55554 3 5889


Q ss_pred             EEEECCCCCceeEE-eccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEee------cCCC-eEEEEEecC
Q 008356           63 HLWDTTGRSPKVSW-LKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCIT------YEAP-FSSLAFIDD  133 (568)
Q Consensus        63 ~VWDl~t~~~~v~~-l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~~------h~~~-ItsLafsPd  133 (568)
                      .++| .+++. +.. +. ...   |+.+.|++ +.+++.+.||.+.++|. +++.+....      ...+ .....+.++
T Consensus       151 ~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          151 GLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            9999 88763 333 32 222   24455643 56677788999999999 877663321      1112 233456676


Q ss_pred             CCEEEEEEcCCeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec---------CCCcE
Q 008356          134 DWILTAGTSNGRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA---------VGDSI  203 (568)
Q Consensus       134 g~~LasGs~DG~V~VWDlrt~~~~-v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s---------~Dg~V  203 (568)
                      +..++..+.++.|.+.|+...... ...+.  ..........|.|.+...+.. ..++..+++...         ..+.|
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~--~~~~~~~~~~~~p~g~~~~~~-s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPID--ALSGGRKADTWRPGGWQQVAY-LKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeee--ecCCcccccceecCceEeEEE-CCCCCEEEEEeccCCcccccCCCCeE
Confidence            666555557889999999764321 11111  111122233445544333322 112233333322         13579


Q ss_pred             EcCCCCCCCccccc
Q 008356          204 LMPDPLPSVTTSSV  217 (568)
Q Consensus       204 ~VWDlr~~~~~~s~  217 (568)
                      .++|+.......++
T Consensus       301 ~VID~~t~~vv~~i  314 (373)
T 2mad_H          301 TSVTGLVGQTSSQI  314 (373)
T ss_pred             EEEECCCCEEEEEE
Confidence            99998776554443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.57  E-value=4.4e-06  Score=94.33  Aligned_cols=195  Identities=14%  Similarity=0.151  Sum_probs=123.7

Q ss_pred             CccCCCCEEEEEECCC-------------cEEEEECCCCce--eEEeeCC--CCCcEEEEEEccCCCeEEEEEeCC---C
Q 008356            1 MYNCKDEHLASISLSG-------------DLILHNLASGAK--AAELKDP--NEQVLRVLDYSRNSRHLLVTAGDD---G   60 (568)
Q Consensus         1 afSpdG~~LasGs~DG-------------~V~VWDl~tg~~--v~~l~~~--h~~~Vs~Lafspdg~~lLaTgs~D---G   60 (568)
                      +|+ ||+.|+.+..+.             .|++|++.++..  ...+...  +...+..+.|+|+++.++++...+   .
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence            488 999999888774             399999987653  3333321  123456789999999766666533   5


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CC---CeEEEEECCCCce---eeEeecCCCeEEEEEecC
Q 008356           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LD---KKLYTYDPGSRRP---SSCITYEAPFSSLAFIDD  133 (568)
Q Consensus        61 tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs-~D---GtV~IWDlrt~~~---v~~~~h~~~ItsLafsPd  133 (568)
                      .|++||+.+.......+..+....... |.+++..|+..+ .+   +.|..+|+.++..   ...+.+...+.  .|+++
T Consensus       260 ~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          260 RLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             EEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred             EEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence            899999977643355566666666655 666666555444 33   5899999988754   33445555554  88898


Q ss_pred             CCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          134 DWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       134 g~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ++.|+.... ++  .|++||+.+..  ...+. ..+.+.+..+.++++++.++....        +...-+.|..||+..
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~~--~~~l~-~p~~~~~~~~~~~~d~~~l~~~~s--------s~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGKR--VREVA-LPGLGSVSGFNGKHDDPALYFGFE--------NYAQPPTLYRFEPKS  405 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSCE--EEEEC-CSSSSEEEECCCCTTCSCEEEEEE--------CSSSCCEEEEECTTT
T ss_pred             CCEEEEEEEECCeeEEEEEECCCCe--eEEee-cCCCceEEeeecCCCCCEEEEEec--------CCCCCCEEEEEECCC
Confidence            888877665 44  68899988542  23332 234455667777776554433211        001236788888654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.55  E-value=1.6e-06  Score=93.01  Aligned_cols=112  Identities=5%  Similarity=-0.036  Sum_probs=83.1

Q ss_pred             CCCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCC
Q 008356            4 CKDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTG   69 (568)
Q Consensus         4 pdG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---------~DGtV~VWDl~t   69 (568)
                      ++++++++....     +.|.++|+.+++.+..+..... .  .+.++|+++.++++..         .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            466777766553     6999999999999999886433 3  6999999996555542         467899999988


Q ss_pred             CCceeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeEe
Q 008356           70 RSPKVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCI  119 (568)
Q Consensus        70 ~~~~v~~l~~H-------~~~VtslafsPdg~~LaSgs~--DGtV~IWDlrt~~~v~~~  119 (568)
                      .+. +..+...       ......+.|+||+++++++..  ++.|.++|+.+++.+..+
T Consensus       159 ~~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I  216 (426)
T 3c75_H          159 FLP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML  216 (426)
T ss_dssp             CCE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CcE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence            874 3333211       234567899999999998874  578999999987765544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.49  E-value=6.5e-06  Score=87.25  Aligned_cols=198  Identities=11%  Similarity=0.038  Sum_probs=129.2

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeEEe
Q 008356            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~~~v~~l   77 (568)
                      +|+|||++|+++..  ++.|.++|+.+++.+..+...  + +  ..+.|.+...+++.+.||.+.+.++.. ++. ....
T Consensus       143 a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~~  216 (386)
T 3sjl_D          143 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-EITH  216 (386)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E--EEEEEEETTEEEEEETTSCEEEEECCSSSCC-EEEE
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c--ceeecCCCceeEEECCCCCEEEEECCCCCeE-EEee
Confidence            37899999998874  689999999999999888742  2 1  123355544677888999999999865 442 2211


Q ss_pred             ccC----CCCeE-EEEEc-CCCCEEEEEeCCCeEEEEECCCCce--eeEee-----------cCCCeEEEEEecCCCEEE
Q 008356           78 KQH----SAPTA-GISFS-SDDKIIASVGLDKKLYTYDPGSRRP--SSCIT-----------YEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        78 ~~H----~~~Vt-slafs-Pdg~~LaSgs~DGtV~IWDlrt~~~--v~~~~-----------h~~~ItsLafsPdg~~La  138 (568)
                      ..+    ..++. ...|. +++++++ .+.+|.|++.|+.++..  +..+.           ..+.+..++++++++.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly  295 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  295 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence            111    12222 24665 4665444 66689999999976642  22221           123345678899999888


Q ss_pred             EEEc----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          139 AGTS----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       139 sGs~----------DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +...          .+.|.++|+.+.+ .+..+.   -...+..|.++++++.          .++++...++.|.++|.
T Consensus       296 V~~~~~~~~~hk~~~~~V~viD~~t~k-v~~~i~---vg~~~~~lavs~D~~~----------~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          296 LLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFE---MGHEIDSINVSQDEKP----------LLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEE---EEEEECEEEECSSSSC----------EEEEEETTTTEEEEEET
T ss_pred             EEeccccccccCCCCCEEEEEECCCCe-EEEEEE---CCCCcceEEECCCCCe----------EEEEEcCCCCeEEEEEC
Confidence            8753          2579999999984 334443   2246889999997541          12333345889999998


Q ss_pred             CCCCccccccc
Q 008356          209 LPSVTTSSVSL  219 (568)
Q Consensus       209 r~~~~~~s~~~  219 (568)
                      .......+...
T Consensus       362 ~t~k~~~~i~~  372 (386)
T 3sjl_D          362 ESGEELRSVNQ  372 (386)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCcEEEEecC
Confidence            87665554433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.49  E-value=1.6e-06  Score=87.11  Aligned_cols=172  Identities=9%  Similarity=0.114  Sum_probs=109.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEee---CCCCCcEEEEEEccCCCeEEEE----EeC-------------CCe
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVT----AGD-------------DGT   61 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~---~~h~~~Vs~Lafspdg~~lLaT----gs~-------------DGt   61 (568)
                      +.++|+++++...++.|.+|+.. ++......   +.....++++++.++|+ ++++    |..             .+.
T Consensus        93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A           93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCe
Confidence            57888866655556789999975 55332221   11123356799999997 6665    332             256


Q ss_pred             EEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcee--eEe--ecCCCeEEEEEe
Q 008356           62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPS--SCI--TYEAPFSSLAFI  131 (568)
Q Consensus        62 V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D------GtV~IWDlrt~~~v--~~~--~h~~~ItsLafs  131 (568)
                      |+.||..+++..  .+. .....+.++|+|+++.|+.+...      +.|++||+..+...  ..+  ........++++
T Consensus       171 v~~~d~~~g~~~--~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d  247 (305)
T 3dr2_A          171 VYRLPPDGSPLQ--RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD  247 (305)
T ss_dssp             EEEECSSSCCCE--EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC
T ss_pred             EEEEcCCCCcEE--EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC
Confidence            777777655532  222 44567899999999988777665      78999998765411  111  123456678999


Q ss_pred             cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          132 DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       132 Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ++|++. ++..+ .|.+||....  .+..+..  + ..+.+++|.++++.|..+
T Consensus       248 ~~G~lw-v~~~~-gv~~~~~~g~--~~~~~~~--~-~~~~~~~f~~d~~~L~it  294 (305)
T 3dr2_A          248 RGGWLW-SSSGT-GVCVFDSDGQ--LLGHIPT--P-GTASNCTFDQAQQRLFIT  294 (305)
T ss_dssp             TTSCEE-ECCSS-EEEEECTTSC--EEEEEEC--S-SCCCEEEECTTSCEEEEE
T ss_pred             CCCCEE-EecCC-cEEEECCCCC--EEEEEEC--C-CceeEEEEeCCCCEEEEE
Confidence            999954 44444 5999998643  3344442  2 358889998876554433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.47  E-value=1.2e-05  Score=86.68  Aligned_cols=192  Identities=8%  Similarity=0.030  Sum_probs=127.2

Q ss_pred             CCCCEEEEEE-CCCcEEEEECCCC----ceeEEee------CCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEE
Q 008356            4 CKDEHLASIS-LSGDLILHNLASG----AKAAELK------DPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWD   66 (568)
Q Consensus         4 pdG~~LasGs-~DG~V~VWDl~tg----~~v~~l~------~~h~~~Vs~Lafspdg~~lLaTgs~D------GtV~VWD   66 (568)
                      .++++|++.+ .++.|+|+|+.+.    +.++.+.      ......-+.+.+.|++  +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            7788877654 6789999998754    4555552      0011134557788998  66666555      7899999


Q ss_pred             CCCCCceeEEeccC--C-CCeEEEEEcCCCCEEEEEe-------------------CCCeEEEEECCCCceeeEeecC--
Q 008356           67 TTGRSPKVSWLKQH--S-APTAGISFSSDDKIIASVG-------------------LDKKLYTYDPGSRRPSSCITYE--  122 (568)
Q Consensus        67 l~t~~~~v~~l~~H--~-~~VtslafsPdg~~LaSgs-------------------~DGtV~IWDlrt~~~v~~~~h~--  122 (568)
                      ..+.+. +..+...  . ..-+.+.|+|+++.+++..                   .+.+|.+||+.+++.+..+...  
T Consensus       171 ~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          171 HYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCCeE-EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            998874 4444422  2 2245688899999888874                   3689999999998888777553  


Q ss_pred             -CCeEEEEE--ecCCCEEEEEEc------CCeEEEEECCCCCC-ceEEEeecCC----------------CCCeeEEEEc
Q 008356          123 -APFSSLAF--IDDDWILTAGTS------NGRVVFYDIRGKPQ-PLTVLRACSS----------------SEAVSSLCWQ  176 (568)
Q Consensus       123 -~~ItsLaf--sPdg~~LasGs~------DG~V~VWDlrt~~~-~v~~l~~~~h----------------~~~VtsLafs  176 (568)
                       .....++|  +|+++++++++.      ++.|.+|..+.+.- ..+++.....                ......|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             23556666  999999888775      56888776654210 0111110000                2346778888


Q ss_pred             cCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          177 RAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       177 pdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ++|++|           +++.-..+.|.+||+.
T Consensus       330 ~DGrfL-----------YVSnrg~d~VavfdV~  351 (462)
T 2ece_A          330 LDDKFL-----------YLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             TTSCEE-----------EEEETTTTEEEEEECS
T ss_pred             CCCCEE-----------EEEeCCCCEEEEEEec
Confidence            887665           4445567899999986

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.46  E-value=1.7e-06  Score=88.79  Aligned_cols=189  Identities=7%  Similarity=0.037  Sum_probs=116.6

Q ss_pred             ccCCCCEEEEEE--CCCcEEEEECCCCceeEEeeC------CCCCcEEEEEEccCCCeEEEEEeC-----CCeEEEEECC
Q 008356            2 YNCKDEHLASIS--LSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTT   68 (568)
Q Consensus         2 fSpdG~~LasGs--~DG~V~VWDl~tg~~v~~l~~------~h~~~Vs~Lafspdg~~lLaTgs~-----DGtV~VWDl~   68 (568)
                      ++++|+.+++..  .++.+.||.+.+++. ..+..      .+-..+..++++++++ ++++-..     ++.|.+||+.
T Consensus        24 ~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~  101 (343)
T 2qe8_A           24 LTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTL  101 (343)
T ss_dssp             ECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETT
T ss_pred             ECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECC
Confidence            678999888764  234355555545543 22211      1335688899999986 5554433     5789999998


Q ss_pred             CCCceeEEecc------CCCCeEEEEEcCCCCEE-EEEe---CCCeEEEEECCCCceeeEeec-----------------
Q 008356           69 GRSPKVSWLKQ------HSAPTAGISFSSDDKII-ASVG---LDKKLYTYDPGSRRPSSCITY-----------------  121 (568)
Q Consensus        69 t~~~~v~~l~~------H~~~VtslafsPdg~~L-aSgs---~DGtV~IWDlrt~~~v~~~~h-----------------  121 (568)
                      +++. +..+..      +...++.+++++++..+ ++-.   .++.|.+||+.+++..+.+..                 
T Consensus       102 tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~  180 (343)
T 2qe8_A          102 NNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP  180 (343)
T ss_dssp             TTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred             CCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence            7762 222221      23457899999865444 5544   578999999988765554311                 


Q ss_pred             -------------CCCeEEEEEecCCCEEEEEEcCC-eEEEEECCC---CC-------CceEEEeecCCCCCeeEEEEcc
Q 008356          122 -------------EAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRG---KP-------QPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       122 -------------~~~ItsLafsPdg~~LasGs~DG-~V~VWDlrt---~~-------~~v~~l~~~~h~~~VtsLafsp  177 (568)
                                   ...+..++|+|++++|+++..++ .|..++...   ..       ..+..+   ++......+++++
T Consensus       181 ~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~g~pdgia~d~  257 (343)
T 2qe8_A          181 VQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY---SEKPICDGISIDK  257 (343)
T ss_dssp             CBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE---EECCSCSCEEECT
T ss_pred             EEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec---ccCCCCceEEECC
Confidence                         12357899999999998887665 565555421   10       001111   2333456678877


Q ss_pred             CCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          178 AKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       178 dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +|.+            +++...++.|.+||.
T Consensus       258 ~G~l------------~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          258 DHNI------------YVGDLAHSAIGVITS  276 (343)
T ss_dssp             TCCE------------EEEEGGGTEEEEEET
T ss_pred             CCCE------------EEEccCCCeEEEEEC
Confidence            6544            444455788888886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.45  E-value=5e-06  Score=94.32  Aligned_cols=178  Identities=14%  Similarity=0.166  Sum_probs=118.6

Q ss_pred             ccCCCCEEEEEECCCc-------------------EEEEECCCCceeEEeeCCCC--------CcEEEEEEccCCC--eE
Q 008356            2 YNCKDEHLASISLSGD-------------------LILHNLASGAKAAELKDPNE--------QVLRVLDYSRNSR--HL   52 (568)
Q Consensus         2 fSpdG~~LasGs~DG~-------------------V~VWDl~tg~~v~~l~~~h~--------~~Vs~Lafspdg~--~l   52 (568)
                      |.+++++|+++..++.                   |..+|..+|+.+..++..+.        ..+.......+++  .+
T Consensus       242 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~  321 (689)
T 1yiq_A          242 YDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKV  321 (689)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEE
Confidence            4667888888877763                   99999999999888765321        1111122222442  36


Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEeccCCC--------------------------------------CeEEEEEcCCCC
Q 008356           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQHSA--------------------------------------PTAGISFSSDDK   94 (568)
Q Consensus        53 LaTgs~DGtV~VWDl~t~~~~v~~l~~H~~--------------------------------------~VtslafsPdg~   94 (568)
                      ++.++.+|.|+++|..+++.+...-.....                                      .-..++|+|+..
T Consensus       322 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~  401 (689)
T 1yiq_A          322 LMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG  401 (689)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC
Confidence            888999999999999888743211111000                                      011267888777


Q ss_pred             EEEEEeC---------------------------------------------CCeEEEEECCCCceeeEeecCCCeEEEE
Q 008356           95 IIASVGL---------------------------------------------DKKLYTYDPGSRRPSSCITYEAPFSSLA  129 (568)
Q Consensus        95 ~LaSgs~---------------------------------------------DGtV~IWDlrt~~~v~~~~h~~~ItsLa  129 (568)
                      ++++...                                             +|.|+.||+.+++.+..+.+..++....
T Consensus       402 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~  481 (689)
T 1yiq_A          402 LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGT  481 (689)
T ss_dssp             EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred             EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCcc
Confidence            7776522                                             3789999999999988887666555556


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 008356          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV  181 (568)
Q Consensus       130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~  181 (568)
                      +...+.++++|+.||.|+.||.++++...+ ++. ++.....-+.|..+|+.
T Consensus       482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~-~~~-~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          482 LSTAGNLVFEGSADGRVIAYAADTGEKLWE-QPA-ASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEE-EEC-SSCCCSCCEEEEETTEE
T ss_pred             ceECCCEEEEECCCCcEEEEECCCCcccee-eeC-CCCcccCceEEEECCEE
Confidence            667788999999999999999999854333 331 22222334667676654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.42  E-value=8e-06  Score=92.43  Aligned_cols=179  Identities=12%  Similarity=0.176  Sum_probs=122.0

Q ss_pred             ccCCCCEEEEEECCC-------------------cEEEEECCCCceeEEeeCCCC--------CcEEEEEEccCCC--eE
Q 008356            2 YNCKDEHLASISLSG-------------------DLILHNLASGAKAAELKDPNE--------QVLRVLDYSRNSR--HL   52 (568)
Q Consensus         2 fSpdG~~LasGs~DG-------------------~V~VWDl~tg~~v~~l~~~h~--------~~Vs~Lafspdg~--~l   52 (568)
                      |.+++++|+++..++                   .|..+|..+|+.+..++..+.        .....+....+|+  .+
T Consensus       250 ~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~  329 (677)
T 1kb0_A          250 FDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKV  329 (677)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeE
Confidence            456788888877654                   499999999999887764321        1112233444663  47


Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEeccC----------CCCe------------------------EEEEEcCCCCEEEE
Q 008356           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQH----------SAPT------------------------AGISFSSDDKIIAS   98 (568)
Q Consensus        53 LaTgs~DGtV~VWDl~t~~~~v~~l~~H----------~~~V------------------------tslafsPdg~~LaS   98 (568)
                      ++.++.+|.|+++|..+++.+...-...          ..++                        ..++|+|+..++++
T Consensus       330 l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv  409 (677)
T 1kb0_A          330 ILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL  409 (677)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred             EEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE
Confidence            8999999999999999887432221110          0111                        14688898888777


Q ss_pred             EeC-------------------------------------------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCC
Q 008356           99 VGL-------------------------------------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW  135 (568)
Q Consensus        99 gs~-------------------------------------------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~  135 (568)
                      ...                                           .+.|..||+.+++.+..+.+..++....+...+.
T Consensus       410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGN  489 (677)
T ss_dssp             EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTT
T ss_pred             eChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCC
Confidence            543                                           2789999999999988887776666666777888


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeE
Q 008356          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       136 ~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~L  182 (568)
                      ++++++.||.|++||.++++.. ..+.. ++.....-+.|..+|+.+
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~l-w~~~~-~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKL-WEAPT-GTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEE-EEEEC-SSCCCSCCEEEEETTEEE
T ss_pred             EEEEECCCCcEEEEECCCCcee-eeeeC-CCCcccCCEEEEeCCEEE
Confidence            9999999999999999998543 33331 333333445666766543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.41  E-value=1.2e-05  Score=80.64  Aligned_cols=172  Identities=14%  Similarity=0.215  Sum_probs=113.9

Q ss_pred             ccCCCCEEEEEECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |+ ++.+..+.+.+|  .|+++|+++++.+..+.......-..+++  +++.+++..-.++.+.+||..+.+. +..+..
T Consensus        50 ~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~-~~ti~~  125 (262)
T 3nol_A           50 YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQ-VRSFNY  125 (262)
T ss_dssp             EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCE-EEEEEC
T ss_pred             EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcE-EEEEEC
Confidence            44 555566666666  89999999999988887533222223444  3555666666789999999988874 444443


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec---C---CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---E---APFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h---~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ..   ....+.++++.|+....++.|.++|..+.+.+..+.-   .   ..++.+.|. +|++.+..-.++.|.+.|+++
T Consensus       126 ~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          126 DG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             SS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred             CC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence            22   1123335677777666688999999999988877642   1   335667887 676555454688999999998


Q ss_pred             CCCceEEEeecC----------CCCCeeEEEEccCCCeE
Q 008356          154 KPQPLTVLRACS----------SSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       154 ~~~~v~~l~~~~----------h~~~VtsLafspdg~~L  182 (568)
                      ++ ....+...+          .....+.|+|+|+++.|
T Consensus       202 G~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          202 GK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             CB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             Cc-EEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            83 445554321          12356889999975443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.39  E-value=0.0001  Score=72.22  Aligned_cols=187  Identities=12%  Similarity=0.044  Sum_probs=119.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCcee-----EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            6 DEHLASISLSGDLILHNLASGAKA-----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v-----~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |.+|+.+.. +.|+.+++......     ..+.. .......++|+++++.++++-..++.|.++|.++... .......
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~   77 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQD   77 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTT
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECC
Confidence            345666653 47999998654321     11221 1234678999998776677766789999999987653 2333333


Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeEeec-CCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCC
Q 008356           81 SAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITY-EAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKP  155 (568)
Q Consensus        81 ~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~h-~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~  155 (568)
                      ......+++++++..|+ +-...+.|.++|+........... ......++++|++..|+.+..   .+.|..++++...
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~  157 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence            35689999999655554 445678999999875443333322 256789999997666666554   4689999987643


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .  ..+.. ........+++++++..|           +++....+.|.++|+.
T Consensus       158 ~--~~~~~-~~~~~P~gia~d~~~~~l-----------yv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          158 R--RILAQ-DNLGLPNGLTFDAFSSQL-----------CWVDAGTHRAECLNPA  197 (267)
T ss_dssp             C--EEEEC-TTCSCEEEEEEETTTTEE-----------EEEETTTTEEEEEETT
T ss_pred             c--EEEEE-CCCCCCcEEEEcCCCCEE-----------EEEECCCCEEEEEecC
Confidence            2  22221 223467889999865443           4444456777777764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.35  E-value=3.7e-06  Score=88.50  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=113.1

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEeeCCC------CCcEEEEEEccCCCeEEEEEeC--CCeE
Q 008356            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDPN------EQVLRVLDYSRNSRHLLVTAGD--DGTL   62 (568)
Q Consensus         1 afSpdG~~LasGs----------~DG~V~VWDl~tg~~v~~l~~~h------~~~Vs~Lafspdg~~lLaTgs~--DGtV   62 (568)
                      +|+||+++++++.          .++.|.+||+.+++.+.++..+.      ......+.++|+|+. ++++..  +..|
T Consensus        71 ~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~-lyVan~~~~~~v  149 (368)
T 1mda_H           71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAA  149 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEE
T ss_pred             EECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE-EEEEccCCCCeE
Confidence            4789999999886          36889999999999999886431      012345889999985 555443  4567


Q ss_pred             EE--EECCC------CCc--------------------eeEEecc-----------------------------------
Q 008356           63 HL--WDTTG------RSP--------------------KVSWLKQ-----------------------------------   79 (568)
Q Consensus        63 ~V--WDl~t------~~~--------------------~v~~l~~-----------------------------------   79 (568)
                      .+  +|..+      ..+                    ....+..                                   
T Consensus       150 ~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs  229 (368)
T 1mda_H          150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc
Confidence            77  77632      000                    0000000                                   


Q ss_pred             -----------CC---------------------CCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeE
Q 008356           80 -----------HS---------------------APTAGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSC  118 (568)
Q Consensus        80 -----------H~---------------------~~VtslafsPdg~~LaSgs~---------DGtV~IWDlrt~~~v~~  118 (568)
                                 ..                     .....+++++++++++.+..         ++.+.++|+.+.+.+..
T Consensus       230 ~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~  309 (368)
T 1mda_H          230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP  309 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred             CCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE
Confidence                       00                     00011678888888876533         23567999999999888


Q ss_pred             eecCCCeEEEEEecCCCE-EEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          119 ITYEAPFSSLAFIDDDWI-LTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       119 ~~h~~~ItsLafsPdg~~-LasGs-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      +........++|++||++ +++.. .++.|.++|+.+.+ .++.+.   -......+++++
T Consensus       310 i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k-vv~~I~---vg~~P~~i~~~~  366 (368)
T 1mda_H          310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVE---LDKGPESLSVQN  366 (368)
T ss_dssp             CEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECC---CCSCCCEEECCC
T ss_pred             EECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc-EEEEEE---CCCCCCEEEeec
Confidence            866667999999999974 55555 58999999999873 333332   334455666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.34  E-value=1.2e-05  Score=89.26  Aligned_cols=192  Identities=10%  Similarity=-0.047  Sum_probs=134.3

Q ss_pred             CCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEE-c-cCCCeEEEEEe------------------CCCeE
Q 008356            4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDY-S-RNSRHLLVTAG------------------DDGTL   62 (568)
Q Consensus         4 pdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Laf-s-pdg~~lLaTgs------------------~DGtV   62 (568)
                      +||++|++... ++.|.+.|+.+.++...+..........+++ . |++++ +++++                  .++.|
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~-v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNY-VFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSE-EEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcE-EEEecccccccCCCCcccccccccCceE
Confidence            47888888766 4569999999999888665545556788888 4 89984 55553                  34679


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------e
Q 008356           63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--------------------------------------K  104 (568)
Q Consensus        63 ~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG--------------------------------------t  104 (568)
                      .+.|..+.+. ...+.... ....++++|+++++++.+.+.                                      .
T Consensus       178 tvID~~t~~v-~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          178 TAVDADKWEV-AWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEETTTTEE-EEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEECCCCeE-EEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999988763 33333222 346678999999998887553                                      3


Q ss_pred             EEEEECCC--Cce-eeEeecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCc--------eEEEeecCCCCCeeE
Q 008356          105 LYTYDPGS--RRP-SSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP--------LTVLRACSSSEAVSS  172 (568)
Q Consensus       105 V~IWDlrt--~~~-v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~~--------v~~l~~~~h~~~Vts  172 (568)
                      |.+.|.++  ++. +..+.......++.++|||+++++.+ .+..|.++|+.+.+..        ........-......
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            77888887  444 55665566778899999999888766 5789999999854210        011111223456788


Q ss_pred             EEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          173 LCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       173 Lafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ++|+++|            ..+++.-.|++|.+||+..
T Consensus       336 ~aF~~dG------------~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          336 TAFDGRG------------NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEECTTS------------EEEEEETTTTEEEEEEHHH
T ss_pred             EEECCCC------------eEEEEEecCCcEEEEEhhH
Confidence            9999975            3445556689999999755

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.33  E-value=0.00042  Score=67.76  Aligned_cols=191  Identities=10%  Similarity=0.007  Sum_probs=118.6

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |+++++.|+.+. .++.|.++++........+.. .......+++++++.+++++-..++.|.++++++... .......
T Consensus        43 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~  120 (267)
T 1npe_A           43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTG  120 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS
T ss_pred             EecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECC
Confidence            567666666665 467899999865543333322 2245678999997765667766788999999976542 2222223


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKP  155 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~---DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~  155 (568)
                      ......++++|++..|+.+..   .+.|..+++......... ........+++++++..|+.+. ..+.|.++|+....
T Consensus       121 ~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            356799999996666555553   468988888643322222 2234678999999877666555 56889999998642


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                       ....+.   .......++..             ++.++++....+.|.++|....
T Consensus       201 -~~~~~~---~~~~P~gi~~d-------------~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          201 -RRKVLE---GLQYPFAVTSY-------------GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             -EEEEEE---CCCSEEEEEEE-------------TTEEEEEETTTTEEEEEETTTT
T ss_pred             -eEEEec---CCCCceEEEEe-------------CCEEEEEECCCCeEEEEeCCCC
Confidence             222222   11223445432             2344455555677777776543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.31  E-value=2.9e-05  Score=83.61  Aligned_cols=181  Identities=13%  Similarity=0.075  Sum_probs=119.3

Q ss_pred             ccCCCCEEEEEECC------CcEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEEe----------------
Q 008356            2 YNCKDEHLASISLS------GDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAG----------------   57 (568)
Q Consensus         2 fSpdG~~LasGs~D------G~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTgs----------------   57 (568)
                      ..|+| .++++..+      |.|.++|.++.+.+..+....  ...-..+-|+|+++ .+++..                
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~  222 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHL  222 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTH
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhh
Confidence            35788 66655444      789999999999998886321  22234578899998 677764                


Q ss_pred             ---CCCeEEEEECCCCCceeEEeccC--CCCeEEEEE--cCCCCEEEEEe------CCCeEEEEECCCCce--eeEe--e
Q 008356           58 ---DDGTLHLWDTTGRSPKVSWLKQH--SAPTAGISF--SSDDKIIASVG------LDKKLYTYDPGSRRP--SSCI--T  120 (568)
Q Consensus        58 ---~DGtV~VWDl~t~~~~v~~l~~H--~~~Vtslaf--sPdg~~LaSgs------~DGtV~IWDlrt~~~--v~~~--~  120 (568)
                         .+.+|.+||+.+.+ .+..+...  ......+.|  +|+++++++++      .+++|.+|....++.  ...+  .
T Consensus       223 ~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~  301 (462)
T 2ece_A          223 KDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP  301 (462)
T ss_dssp             HHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             hhccCCEEEEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence               37899999998765 34444432  123455656  99999887776      566887766544321  1111  0


Q ss_pred             c-----------------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCc--eEEEeecCC------------CC
Q 008356          121 Y-----------------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQP--LTVLRACSS------------SE  168 (568)
Q Consensus       121 h-----------------~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~--v~~l~~~~h------------~~  168 (568)
                      .                 ......|.+++||++|+++.. .+.|.+||+.....+  +..+..-+.            .+
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~g  381 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTG  381 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCS
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCC
Confidence            0                 245788999999999998875 688999999643222  222321111            01


Q ss_pred             CeeEEEEccCCCeEEEe
Q 008356          169 AVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       169 ~VtsLafspdg~~Las~  185 (568)
                      ....++++|+|++|+..
T Consensus       382 gPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          382 APQMLEISRDGRRVYVT  398 (462)
T ss_dssp             CCCCEEECTTSSEEEEE
T ss_pred             CCCEEEEcCCCCEEEEE
Confidence            35789999999888776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.27  E-value=1.5e-05  Score=83.80  Aligned_cols=101  Identities=4%  Similarity=-0.079  Sum_probs=72.8

Q ss_pred             CEEEEEE-CCC----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCCCc
Q 008356            7 EHLASIS-LSG----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGRSP   72 (568)
Q Consensus         7 ~~LasGs-~DG----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---------~DGtV~VWDl~t~~~   72 (568)
                      .++++.. .++    +|.++|..+++.+..+..... .  .+.++|+++.++++..         .++.|.+||..+.+.
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            4444443 344    888999999999999886544 3  5999999985555442         478999999999884


Q ss_pred             eeEEeccC-------CCCeEEEEEcCCCCEEEEEeC--CCeEEE--EECC
Q 008356           73 KVSWLKQH-------SAPTAGISFSSDDKIIASVGL--DKKLYT--YDPG  111 (568)
Q Consensus        73 ~v~~l~~H-------~~~VtslafsPdg~~LaSgs~--DGtV~I--WDlr  111 (568)
                       +..+..+       ......+.++||+++++++..  +..|.+  +|+.
T Consensus       109 -v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          109 -IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             -EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             -EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence             4454432       134567999999999988874  356777  7773

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.22  E-value=4.8e-05  Score=81.59  Aligned_cols=155  Identities=12%  Similarity=0.071  Sum_probs=98.7

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEeeCCCCCcE------EEEEEccCCCeE--------------------
Q 008356            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVL------RVLDYSRNSRHL--------------------   52 (568)
Q Consensus         1 afSpdG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h~~~V------s~Lafspdg~~l--------------------   52 (568)
                      +|+|||++|+++..  ++.|.+.|+.+++.+..+.......+      ..+.++++++.+                    
T Consensus       183 ~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~  262 (426)
T 3c75_H          183 ALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTE  262 (426)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCT
T ss_pred             EEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC
Confidence            37899999999874  57899999999998877764211000      012333333311                    


Q ss_pred             ----------------EEEEeCCCeEEEEECCCCCcee-EEec---c-------CCCCeEEEEEcCCCCEEEEEeC----
Q 008356           53 ----------------LVTAGDDGTLHLWDTTGRSPKV-SWLK---Q-------HSAPTAGISFSSDDKIIASVGL----  101 (568)
Q Consensus        53 ----------------LaTgs~DGtV~VWDl~t~~~~v-~~l~---~-------H~~~VtslafsPdg~~LaSgs~----  101 (568)
                                      ++.....+.|.+.|+......+ ..+.   .       .......++++++++++++...    
T Consensus       263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence                            1111223334444443222000 0000   0       0111223688998887766542    


Q ss_pred             ------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCC-EEEEEE-cCCeEEEEECCCCC
Q 008356          102 ------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTAGT-SNGRVVFYDIRGKP  155 (568)
Q Consensus       102 ------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~-~LasGs-~DG~V~VWDlrt~~  155 (568)
                            ++.|.++|+.+.+.+..+........++|+||++ ++++.. .++.|.|+|+.+.+
T Consensus       343 gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          343 WKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence                  3579999999999999887666789999999999 888888 59999999999884

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.22  E-value=0.00018  Score=71.48  Aligned_cols=168  Identities=10%  Similarity=0.100  Sum_probs=110.9

Q ss_pred             CCEEEEEECC--CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356            6 DEHLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (568)
Q Consensus         6 G~~LasGs~D--G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~   83 (568)
                      +.+..+.+.+  ..|+++|+++++.+..+.......-..+++.  ++.+++..-.++.+.+||..+.+. +..+..... 
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~-~~ti~~~~~-  106 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP-RARFRYPGE-  106 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE-EEEEECSSC-
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE-EEEEeCCCC-
Confidence            4444555554  4899999999999988875333222334443  455667767899999999988774 444443222 


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                      -..++  +++..|+....+++|.++|..+.+.+..+...      ..++.+.|. +|++.+..-.+..|.+.|+++++ .
T Consensus       107 Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-V  182 (243)
T 3mbr_X          107 GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK-V  182 (243)
T ss_dssp             CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-E
T ss_pred             ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC-E
Confidence            23444  45666666677899999999999888777421      345677776 56655445468899999999884 4


Q ss_pred             eEEEeecC-----------CCCCeeEEEEccCCCe
Q 008356          158 LTVLRACS-----------SSEAVSSLCWQRAKPV  181 (568)
Q Consensus       158 v~~l~~~~-----------h~~~VtsLafspdg~~  181 (568)
                      +..+...+           .....+.|+|+|+++.
T Consensus       183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             EEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence            44444221           1235688999996443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.21  E-value=8.8e-05  Score=74.55  Aligned_cols=167  Identities=11%  Similarity=0.047  Sum_probs=112.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      +.+.++.+.+|.|+++|+++++.+..+ ......-..+++  +++.+++..-.++.+.+||..+.+. +..+..... -.
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~-~~ti~~~~e-Gw  139 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR-ERTTRYSGE-GW  139 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE-EEEEECSSC-CC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE-EEEEeCCCc-ee
Confidence            445566677889999999999988877 322222233444  4455677777899999999988874 444443222 23


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec---C---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY---E---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h---~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      .++  ++++.|+.+..+++|.++|..+.+.+..+.-   .   ..++.+.|. +|++.+..-.++.|.+.|+++++ .+.
T Consensus       140 GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~  215 (268)
T 3nok_A          140 GLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT-VVG  215 (268)
T ss_dssp             CEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEE
T ss_pred             EEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEE
Confidence            444  5677887777799999999999988877742   1   245677887 66555444468899999999883 445


Q ss_pred             EEeec-----------CCCCCeeEEEEccCCCe
Q 008356          160 VLRAC-----------SSSEAVSSLCWQRAKPV  181 (568)
Q Consensus       160 ~l~~~-----------~h~~~VtsLafspdg~~  181 (568)
                      .+...           ......+.|+|+|+++.
T Consensus       216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r  248 (268)
T 3nok_A          216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR  248 (268)
T ss_dssp             EEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred             EEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence            44422           11245788999997443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.20  E-value=0.00033  Score=70.61  Aligned_cols=176  Identities=10%  Similarity=0.089  Sum_probs=113.4

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC-------------------CCcEEEEEEcc-CCCeEEEEEeCCCe
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-------------------EQVLRVLDYSR-NSRHLLVTAGDDGT   61 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-------------------~~~Vs~Lafsp-dg~~lLaTgs~DGt   61 (568)
                      |.++|++++++..++.|..||..+++.. .+....                   ......+++.+ +++  |+.+...+.
T Consensus        26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~v~d~~~~  102 (322)
T 2fp8_A           26 FDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LYIVDCYYH  102 (322)
T ss_dssp             CCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EEEEETTTE
T ss_pred             EcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc--EEEEECCCC
Confidence            5678887888888999999998665433 222100                   12467899997 554  555555555


Q ss_pred             EEEEECCCCCceeEEecc-----CCCCeEEEEEcC-CCCEEEEEeC-----------------CCeEEEEECCCCceeeE
Q 008356           62 LHLWDTTGRSPKVSWLKQ-----HSAPTAGISFSS-DDKIIASVGL-----------------DKKLYTYDPGSRRPSSC  118 (568)
Q Consensus        62 V~VWDl~t~~~~v~~l~~-----H~~~VtslafsP-dg~~LaSgs~-----------------DGtV~IWDlrt~~~v~~  118 (568)
                      |..+|..++..  ..+..     .....+.+++.+ +++++++-..                 ++.|..||..+++....
T Consensus       103 i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          103 LSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             EEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            88888765432  22211     123578999999 8987776532                 36799999887765443


Q ss_pred             eecCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCCC-ceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          119 ITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKPQ-PLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       119 ~~h~~~ItsLafsPdg~~LasG-s~DG~V~VWDlrt~~~-~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .........++|++++++|+++ ..++.|.+|++..... ....+..  ..+ ...++++++|.+.++.
T Consensus       181 ~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred             ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence            3333456789999999877666 4568999999985321 1222221  123 7788998887765554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.19  E-value=4.8e-06  Score=92.45  Aligned_cols=178  Identities=10%  Similarity=-0.000  Sum_probs=117.7

Q ss_pred             CCCCEEEEEE------------------CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-----
Q 008356            4 CKDEHLASIS------------------LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----   60 (568)
Q Consensus         4 pdG~~LasGs------------------~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-----   60 (568)
                      |+++++++++                  .++.|.+.|.++.+.+.++....  ....++++++|+ ++++.+.+.     
T Consensus       145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk-~~~vt~~~se~~~~  221 (595)
T 1fwx_A          145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGK-WAFSTSYNSEKGMT  221 (595)
T ss_dssp             SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSS-EEEEEESCTTCCSS
T ss_pred             CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCC-EEEEEecCcccCcc
Confidence            8899988885                  24579999999998888877422  234578899998 455555332     


Q ss_pred             ---------------------------------eEEEEECCC--CCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe
Q 008356           61 ---------------------------------TLHLWDTTG--RSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK  104 (568)
Q Consensus        61 ---------------------------------tV~VWDl~t--~~~~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGt  104 (568)
                                                       .|.|.|..+  +...+..+.. .....++.++|||+++++++ .+.+
T Consensus       222 i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~  300 (595)
T 1fwx_A          222 LPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT  300 (595)
T ss_dssp             HHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             hhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe
Confidence                                             355666654  2221222222 23467799999999887766 6789


Q ss_pred             EEEEECCCCc------------eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---------CCceEEEee
Q 008356          105 LYTYDPGSRR------------PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---------PQPLTVLRA  163 (568)
Q Consensus       105 V~IWDlrt~~------------~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~---------~~~v~~l~~  163 (568)
                      |.++|+.+.+            .+..+........++|+++|+..++..-|+.|.+||+...         .+.+..+. 
T Consensus       301 VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-  379 (595)
T 1fwx_A          301 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-  379 (595)
T ss_dssp             EEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-
T ss_pred             EEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-
Confidence            9999998653            3344456677999999999944445567999999999761         23344444 


Q ss_pred             cCCCCCe-----eEEEEccCCCeEEEecc
Q 008356          164 CSSSEAV-----SSLCWQRAKPVFIDETT  187 (568)
Q Consensus       164 ~~h~~~V-----tsLafspdg~~Las~s~  187 (568)
                       .|-.+-     ..+.+++||++|++...
T Consensus       380 -V~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          380 -VHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             -CSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             -cccccccceeccceEeCCCCCEEEEcCC
Confidence             222211     22345789999877643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.15  E-value=3e-07  Score=96.08  Aligned_cols=144  Identities=14%  Similarity=0.069  Sum_probs=77.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE-EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs-~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      .++..+++++.||.|+.||.++|+.+..+..+....+. ...+. .+. .+++++.|+.|+.||..+++.. ..+..+. 
T Consensus        47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~-  122 (369)
T 2hz6_A           47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF-  122 (369)
T ss_dssp             ---CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------
T ss_pred             cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEE-EEecCCC-
Confidence            45667777789999999999999877665532111111 00111 233 5778889999999999888742 2233222 


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCC---CEEEEEEcCCeEEEEECCCCC
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDD---WILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg---~~LasGs~DG~V~VWDlrt~~  155 (568)
                         ...++|++..+++++.|+.|+.||.++++.+..+.... ....++..+.   ..+++++.||.|+.||.++++
T Consensus       123 ---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          123 ---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             -------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             ---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence               23456788889999999999999999998776653211 1222333322   567788999999999999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.14  E-value=7.2e-05  Score=84.57  Aligned_cols=197  Identities=9%  Similarity=0.107  Sum_probs=124.3

Q ss_pred             CCEEEEEEC------CCcEEEEECCCCceeEEeeCCCCC-------------------------------cEEEEEEccC
Q 008356            6 DEHLASISL------SGDLILHNLASGAKAAELKDPNEQ-------------------------------VLRVLDYSRN   48 (568)
Q Consensus         6 G~~LasGs~------DG~V~VWDl~tg~~v~~l~~~h~~-------------------------------~Vs~Lafspd   48 (568)
                      +..++++..      +|.|+.||..+|+.+..+......                               ....+.++++
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            445666553      689999999999998777642211                               1124678888


Q ss_pred             CCeEEEEEeCCC-------------------eEEEEECCCCCceeEEecc-CC-------CCeEEEEEcCCC---CEEEE
Q 008356           49 SRHLLVTAGDDG-------------------TLHLWDTTGRSPKVSWLKQ-HS-------APTAGISFSSDD---KIIAS   98 (568)
Q Consensus        49 g~~lLaTgs~DG-------------------tV~VWDl~t~~~~v~~l~~-H~-------~~VtslafsPdg---~~LaS   98 (568)
                      +. +++.+..++                   .|..+|.++++...+.-.. |.       ....-+....++   ..++.
T Consensus       254 ~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~  332 (677)
T 1kb0_A          254 LN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH  332 (677)
T ss_dssp             TT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred             CC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence            77 677776654                   5999999988843322222 21       122223333467   67899


Q ss_pred             EeCCCeEEEEECCCCceeeEeecCC-----------C-e------------------------EEEEEecCCCEEEEEEc
Q 008356           99 VGLDKKLYTYDPGSRRPSSCITYEA-----------P-F------------------------SSLAFIDDDWILTAGTS  142 (568)
Q Consensus        99 gs~DGtV~IWDlrt~~~v~~~~h~~-----------~-I------------------------tsLafsPdg~~LasGs~  142 (568)
                      ++.+|.|+++|.++++.+..+....           . +                        ..++++|+..++++...
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~  412 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ  412 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred             ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence            9999999999999999876653210           0 1                        14688998888887654


Q ss_pred             C-------------------------------------------CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356          143 N-------------------------------------------GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (568)
Q Consensus       143 D-------------------------------------------G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg  179 (568)
                      +                                           |.|..||+.+++...+. .   +..++....+... 
T Consensus       413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~-~---~~~~~~~g~~~~~-  487 (677)
T 1kb0_A          413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV-E---HVSPWNGGTLTTA-  487 (677)
T ss_dssp             ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE-E---ESSSCCCCEEEET-
T ss_pred             hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec-C---CCCCCcCcceEeC-
Confidence            2                                           67888998887432222 1   2222222222222 


Q ss_pred             CeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       180 ~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                                ++ +++.++.|+.+++||.+......++..
T Consensus       488 ----------g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          488 ----------GN-VVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             ----------TT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ----------CC-EEEEECCCCcEEEEECCCCceeeeeeC
Confidence                      23 344457799999999988776555443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.06  E-value=0.00017  Score=81.80  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=69.8

Q ss_pred             CCcEEEEECCCCceeEEeeCCC-C-----------------------------CcEEEEEEccCCCeEEEEEeCCCe---
Q 008356           15 SGDLILHNLASGAKAAELKDPN-E-----------------------------QVLRVLDYSRNSRHLLVTAGDDGT---   61 (568)
Q Consensus        15 DG~V~VWDl~tg~~v~~l~~~h-~-----------------------------~~Vs~Lafspdg~~lLaTgs~DGt---   61 (568)
                      +|.|+.||..+|+.+..+.... .                             .....+.++++.. +++.+..++.   
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~  260 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWD  260 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccc
Confidence            6899999999999887765211 0                             0112467888776 7888877764   


Q ss_pred             ----------------EEEEECCCCCceeEEecc-CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEECCCCc
Q 008356           62 ----------------LHLWDTTGRSPKVSWLKQ-HS-------APTAGISFSSDDK---IIASVGLDKKLYTYDPGSRR  114 (568)
Q Consensus        62 ----------------V~VWDl~t~~~~v~~l~~-H~-------~~VtslafsPdg~---~LaSgs~DGtV~IWDlrt~~  114 (568)
                                      |..||.++++...+.-.. |.       .++.......+++   .++.++.+|.|+++|.++++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            999999998854332222 22       1222222223554   78889999999999999999


Q ss_pred             eeeE
Q 008356          115 PSSC  118 (568)
Q Consensus       115 ~v~~  118 (568)
                      .+..
T Consensus       341 ~l~~  344 (689)
T 1yiq_A          341 LLSA  344 (689)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            8743

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.03  E-value=0.0027  Score=64.45  Aligned_cols=185  Identities=8%  Similarity=-0.050  Sum_probs=117.5

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---CceeEEeccCCCCe
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---SPKVSWLKQHSAPT   84 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~---~~~v~~l~~H~~~V   84 (568)
                      +|+.+. ...|+..|+...+....+.  .......++|++.++.++++-..++.|+.+++.+.   ......+.......
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            344443 4579999998776555444  23456779999877667777777899999999761   21222333333456


Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc-C-CeEEEEECCCCCCceEE
Q 008356           85 AGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS-N-GRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        85 tslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~-D-G~V~VWDlrt~~~~v~~  160 (568)
                      ..+++.+.+ +++++-...+.|.++|+........+. .......++++|.+..|+.... . +.|..++++...  .+.
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~  157 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYS  157 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEE
Confidence            889998744 444555678899999987654443333 3457899999997666655554 3 789999987653  222


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +.. ..-.....|+|++++..           ++++....+.|..+|+.
T Consensus       158 ~~~-~~~~~P~gla~d~~~~~-----------lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          158 LVT-ENIQWPNGITLDLLSGR-----------LYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EEC-SSCSCEEEEEEETTTTE-----------EEEEETTTTEEEEEETT
T ss_pred             EEE-CCCCCceEEEEeccCCE-----------EEEEECCCCeEEEEecC
Confidence            221 23356789999986444           34444445667777654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.02  E-value=0.00053  Score=70.28  Aligned_cols=145  Identities=11%  Similarity=0.028  Sum_probs=96.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCC--------CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPN--------EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--------~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      ++..|++++.++.|+.+|.++|+.+..+....        ...+...... ++. .++.++.++.|+.+|..+++... .
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~v~~~~g~l~a~d~~tG~~~W-~  128 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGG-HVYIGSEKAQVYALNTSDGTVAW-Q  128 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETT-EEEEEETTSEEEEEETTTCCEEE-E
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCC-EEEEEcCCCEEEEEECCCCCEEE-E
Confidence            46678888889999999999999887666422        2223222222 233 57788899999999998887432 2


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCe------EEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF------SSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~I------tsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      .............  .+..++.++.++.|..+|.++++.+........+      ......  +..++++..++.|..+|
T Consensus       129 ~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          129 TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred             EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence            2222211111122  2557888889999999999999988777544333      122222  45788888899999999


Q ss_pred             CCCCCC
Q 008356          151 IRGKPQ  156 (568)
Q Consensus       151 lrt~~~  156 (568)
                      .++++.
T Consensus       205 ~~tG~~  210 (376)
T 3q7m_A          205 MEQGQM  210 (376)
T ss_dssp             TTTCCE
T ss_pred             CCCCcE
Confidence            988753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.98  E-value=0.00018  Score=71.59  Aligned_cols=137  Identities=16%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      +..|.+++.++.|..+|.. ++....+.. ....+.++...+++.  ++.++.++.|..||.. ++. ..........+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~  180 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTE-KWRFKTNDAITS  180 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCE-EEEEECSSCCCS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCE-eEEEecCCCcee
Confidence            4567778888999999987 777666654 334455566676765  6667888999999988 542 333444455677


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      ++.+.+++.+++. +  +.|..|| .+++.+.... ....+.++...++|. |.+++.++.|..+|...
T Consensus       181 ~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          181 AASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             CCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred             eeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence            7778777775544 4  7799999 6776665553 345678888888775 55677788899887543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.93  E-value=0.00048  Score=70.61  Aligned_cols=187  Identities=12%  Similarity=0.004  Sum_probs=110.3

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCc----EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQV----LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~----Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      +..++++..++.|+.+|..+|+.+..+.......    ....... + . .++.+..++.|..+|..+++.....-....
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~  219 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQA  219 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence            4467777788888888888888776665421110    0111222 2 3 577788899999999988774322211111


Q ss_pred             C------CeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356           82 A------PTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG  153 (568)
Q Consensus        82 ~------~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt  153 (568)
                      .      .+..+...|  .+..++.++.++.|..+|.++++.+...... ....+...  +..|++++.++.|..+|.++
T Consensus       220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~--~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIVD--GNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEEE--TTEEEEEETTCCEEEEETTT
T ss_pred             CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceEE--CCEEEEEcCCCeEEEEECCC
Confidence            0      000011122  3567888888999999999999887665432 34444443  67888889999999999998


Q ss_pred             CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      ++.... ... .....+......             ++ .++.++.++.|.++|.......
T Consensus       297 G~~~w~-~~~-~~~~~~~~~~~~-------------~~-~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          297 GVTLWT-QSD-LLHRLLTSPVLY-------------NG-NLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             CCEEEE-ECT-TTTSCCCCCEEE-------------TT-EEEEECTTSEEEEEETTTCCEE
T ss_pred             CcEEEe-ecc-cCCCcccCCEEE-------------CC-EEEEEeCCCeEEEEECCCCcEE
Confidence            753211 110 111112212111             12 3444555888999988765543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.92  E-value=0.0012  Score=68.82  Aligned_cols=201  Identities=11%  Similarity=0.143  Sum_probs=128.0

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC----CCe--EEEEEeC---CCeEEEEECCCCCceeE
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN----SRH--LLVTAGD---DGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd----g~~--lLaTgs~---DGtV~VWDl~t~~~~v~   75 (568)
                      ...+++...+++-|.+||+ +|+.+..+..   +.++.+..-+.    ++.  ++++...   +++|.+|+++.....+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            3456666677889999999 8998888763   44566666552    221  3344443   57899998853221244


Q ss_pred             Eecc------CC-CCeEEEEE--cC-CCC-EEEEEeCCCeEEEEECC-------CCceeeEeecCCCeEEEEEecCCCEE
Q 008356           76 WLKQ------HS-APTAGISF--SS-DDK-IIASVGLDKKLYTYDPG-------SRRPSSCITYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        76 ~l~~------H~-~~Vtslaf--sP-dg~-~LaSgs~DGtV~IWDlr-------t~~~v~~~~h~~~ItsLafsPdg~~L  137 (568)
                      .+..      .. ..++.+|+  ++ .++ ++++...+|.+..|++.       +.+.++.+.....+..|...+....|
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRL  194 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeE
Confidence            4421      11 56777888  77 444 67888889999999883       33567778888899999999999999


Q ss_pred             EEEEcCCeEEEEECCCCC-CceEEEeec--CCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC-CCC
Q 008356          138 TAGTSNGRVVFYDIRGKP-QPLTVLRAC--SSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL-PSV  212 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~-~~v~~l~~~--~h~-~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr-~~~  212 (568)
                      +++-++.-|..||.+-.. ...+.+...  ++- ..+..|++.+..        ...+.+++++-.+..+.+||.. +..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~--------~g~gyLivSsQG~~s~~Vydr~~~~~  266 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA--------DGKGYLMASSQGNSSYAIYDRQGKNK  266 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG--------GGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC--------CCCEEEEEEcCCCCEEEEEECCCCCc
Confidence            999999777777755221 111222222  222 357777774320        1122345555568899999986 444


Q ss_pred             ccccc
Q 008356          213 TTSSV  217 (568)
Q Consensus       213 ~~~s~  217 (568)
                      ...++
T Consensus       267 ~vg~f  271 (355)
T 3amr_A          267 YVADF  271 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.91  E-value=0.001  Score=66.95  Aligned_cols=188  Identities=13%  Similarity=0.119  Sum_probs=111.3

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeC----CCCCcEEEEEEcc-CCCeEEEEEeC-----------------CC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKD----PNEQVLRVLDYSR-NSRHLLVTAGD-----------------DG   60 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~----~h~~~Vs~Lafsp-dg~~lLaTgs~-----------------DG   60 (568)
                      .+++..|+++...+.|.++|..+++. ..+..    ........+++.+ +|. ++++-..                 ++
T Consensus        88 ~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           88 NLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             ETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             cCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCc
Confidence            44334566665555688888765432 22221    1123467899999 886 5555322                 36


Q ss_pred             eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc--eeeEe-ecCCCeEEEEEecCCCE
Q 008356           61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRR--PSSCI-TYEAPFSSLAFIDDDWI  136 (568)
Q Consensus        61 tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt~~--~v~~~-~h~~~ItsLafsPdg~~  136 (568)
                      .|..||..++.  +..+.......+.++|++++++|+.+ ...+.|.+||+....  ....+ ...+ ...+++.++|++
T Consensus       166 ~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          166 RLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             EEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             eEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            78888876654  22222222446789999999866655 566899999987532  11222 2233 788999999987


Q ss_pred             EEEEEc----------CCeEEEEECCCCCCceEEEeecCC--CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356          137 LTAGTS----------NGRVVFYDIRGKPQPLTVLRACSS--SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL  204 (568)
Q Consensus       137 LasGs~----------DG~V~VWDlrt~~~~v~~l~~~~h--~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~  204 (568)
                      .++...          .+.|.++|...  +.+..+.....  ...++++++.             ++.++++....+.|.
T Consensus       243 ~va~~~~~~~~~~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~~~-------------~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          243 WVSSSEELDGNMHGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQEH-------------DGLLYIGTLFHGSVG  307 (322)
T ss_dssp             EEEEEEETTSSTTSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEEEE-------------TTEEEEECSSCSEEE
T ss_pred             EEEecCcccccccCCCccEEEEECCCC--CEEEEEECCCCCccccceEEEEe-------------CCEEEEeecCCCceE
Confidence            666544          46788888753  23344432110  1335555542             345666666678888


Q ss_pred             cCCCCC
Q 008356          205 MPDPLP  210 (568)
Q Consensus       205 VWDlr~  210 (568)
                      ++++..
T Consensus       308 ~~~~~~  313 (322)
T 2fp8_A          308 ILVYDK  313 (322)
T ss_dssp             EEEC--
T ss_pred             EEeccc
Confidence            888653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.91  E-value=0.00052  Score=78.35  Aligned_cols=148  Identities=8%  Similarity=-0.006  Sum_probs=91.5

Q ss_pred             Ccc-CCCCEEEEEEC-CC----cEEEEECCCC-ceeE-EeeCCCCCcEEEEEEccCCCeEEEEEeCC----CeEEEEECC
Q 008356            1 MYN-CKDEHLASISL-SG----DLILHNLASG-AKAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGDD----GTLHLWDTT   68 (568)
Q Consensus         1 afS-pdG~~LasGs~-DG----~V~VWDl~tg-~~v~-~l~~~h~~~Vs~Lafspdg~~lLaTgs~D----GtV~VWDl~   68 (568)
                      +|+ |||++||.+.. +|    .|+++|+.++ +.+. .+.    .....+.|+|+++.++++..++    ..|+++++.
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            378 99999886543 33    4999999988 6321 111    1233578999998666665432    368888887


Q ss_pred             CCCce-eEEec-cCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc--e--eeEee-cCCCeEEEEEecCCCEEE
Q 008356           69 GRSPK-VSWLK-QHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRR--P--SSCIT-YEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        69 t~~~~-v~~l~-~H~~~VtslafsPdg~~LaSgs~---DGtV~IWDlrt~~--~--v~~~~-h~~~ItsLafsPdg~~La  138 (568)
                      +.... ...+. .+......+.|+||+++|+....   ...|+++|+.++.  .  ..... .......+.|+. |..|+
T Consensus       256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~  334 (751)
T 2xe4_A          256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLV  334 (751)
T ss_dssp             SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEE
T ss_pred             CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEE
Confidence            65422 22222 33345678899999998887653   3478999998752  2  22222 334555566554 55554


Q ss_pred             EEE-cC----CeEEEEECCC
Q 008356          139 AGT-SN----GRVVFYDIRG  153 (568)
Q Consensus       139 sGs-~D----G~V~VWDlrt  153 (568)
                      ..+ .+    ..|.++|+.+
T Consensus       335 ~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          335 ILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEECTTTCTTCEEEEEETTS
T ss_pred             EEeCCCCCCCcEEEEEcCCC
Confidence            443 33    3677788764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.90  E-value=0.00084  Score=67.45  Aligned_cols=174  Identities=13%  Similarity=0.054  Sum_probs=108.6

Q ss_pred             ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCC
Q 008356           27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDK  103 (568)
Q Consensus        27 ~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~DG  103 (568)
                      +.+.++..........+.|++++. ++++.+.  ++.|+++|+.+++. +..+. ........+++. .++..++.-.++
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL-NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE-TTEEEEEETTCS
T ss_pred             eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe-CCEEEEEEecCC
Confidence            345666532223468899999863 5665553  67999999998874 33332 222223345555 233444555788


Q ss_pred             eEEEEECCCCceeeEeecC-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCC
Q 008356          104 KLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAK  179 (568)
Q Consensus       104 tV~IWDlrt~~~v~~~~h~-~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg  179 (568)
                      .|.++|..+.+.+..+... ..  ...+.+||+.|+++..++.|.++|..+.+ ....+..-.+..   .++.+.|. +|
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~~nele~~-dg  162 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRVIRLNELEYI-NG  162 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECCCCcccccceeEEEE-CC
Confidence            9999999999998888654 32  24456678878777788999999998874 333333111111   24566665 33


Q ss_pred             CeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          180 PVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       180 ~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                                  .+++....++.|.+.|+........+..
T Consensus       163 ------------~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          163 ------------EVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             ------------EEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             ------------EEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence                        3344444567888888877665555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.89  E-value=0.00074  Score=67.84  Aligned_cols=172  Identities=12%  Similarity=0.099  Sum_probs=109.8

Q ss_pred             eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008356           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT  107 (568)
Q Consensus        28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~I  107 (568)
                      .+.++..........|.|+.  +.++++.+.+|.|+++|+.+++.....+. ....-..+++. .+++.+..-.++.+.+
T Consensus        45 Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~-~~~FgeGit~~-g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWMERL-GNIFAEGLASD-GERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEEEC-TTCCEEEEEEC-SSCEEEEESSSCEEEE
T ss_pred             EEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEECC-CCcceeEEEEe-CCEEEEEEccCCEEEE
Confidence            44555432345567888873  45888889999999999998885433322 11112335554 3345555567899999


Q ss_pred             EECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEE
Q 008356          108 YDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFID  184 (568)
Q Consensus       108 WDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~~Las  184 (568)
                      ||..+.+.+..+.....-..++  ++++.|+....++.|.++|..+.+ ....+....+..   .++.+.|. +|     
T Consensus       121 ~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~-dG-----  191 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA-NG-----  191 (268)
T ss_dssp             EETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TT-----
T ss_pred             EECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe-CC-----
Confidence            9999999999987655444454  567888888889999999999874 334333222222   23556655 33     


Q ss_pred             eccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          185 ETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                             .+++..-.++.|.+.|+........+..
T Consensus       192 -------~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          192 -------VIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             -------EEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             -------EEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence                   3334444466777777776665554443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.88  E-value=0.012  Score=59.45  Aligned_cols=173  Identities=12%  Similarity=-0.031  Sum_probs=104.5

Q ss_pred             ccCCCCEEEEEEC-CCcEEEEECCC---CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            2 YNCKDEHLASISL-SGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         2 fSpdG~~LasGs~-DG~V~VWDl~t---g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      |+++++.|+.... ++.|+.+++..   +.....+....-.....+++.+.+++++++-..++.|.++|+++... ...+
T Consensus        37 ~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~  115 (316)
T 1ijq_A           37 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF  115 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEE
Confidence            5666666665554 57888888765   12222222112233467888876665777767789999999986552 2223


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGL-D-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~-D-GtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt  153 (568)
                      .........+++.|.+..|+.+.. . +.|..+++......... ..-.....+++++++..|+.+. ..+.|..+|++.
T Consensus       116 ~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          116 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            334456899999996665555543 3 68999988644332222 2345678999999877766655 567899999986


Q ss_pred             CCCceEEEeecCCCCCeeEEEEc
Q 008356          154 KPQPLTVLRACSSSEAVSSLCWQ  176 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLafs  176 (568)
                      .. ...+............+++.
T Consensus       196 ~~-~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          196 GN-RKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             CS-CEEEEECTTTTSSEEEEEEE
T ss_pred             Cc-eEEEeecCCccCCcEEEEEE
Confidence            43 22222211122345666664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.87  E-value=0.0039  Score=62.15  Aligned_cols=181  Identities=11%  Similarity=0.145  Sum_probs=114.9

Q ss_pred             CccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEe
Q 008356            1 MYNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWL   77 (568)
Q Consensus         1 afSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--~v~~l   77 (568)
                      +|+|+++.|+ +...++.|...|+. ++.+..+.-....-...|++.+++. ++++.-.++.+.++++.....  .+...
T Consensus        33 a~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~  110 (255)
T 3qqz_A           33 TWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPNSEVKILKKI  110 (255)
T ss_dssp             EEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCCCeeeeeeee
Confidence            4678776555 56778899999987 8888777532234567788888775 556655678899999865442  11111


Q ss_pred             c------cCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEC-CCCceeeEee--------cCCCeEEEEEecC-CCEEEE
Q 008356           78 K------QHSAPTAGISFSSDDKIIASVGLDK--KLYTYDP-GSRRPSSCIT--------YEAPFSSLAFIDD-DWILTA  139 (568)
Q Consensus        78 ~------~H~~~VtslafsPdg~~LaSgs~DG--tV~IWDl-rt~~~v~~~~--------h~~~ItsLafsPd-g~~Las  139 (568)
                      .      ........++|+|.++.|+++.+..  .|+.|+- .....+....        ....+..++++|. +++++.
T Consensus       111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliL  190 (255)
T 3qqz_A          111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVL  190 (255)
T ss_dssp             ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEE
T ss_pred             ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEE
Confidence            1      2344568999999887776666544  4555551 1111222221        2345789999996 556666


Q ss_pred             EEcCCeEEEEECCCCCCceEEEeecC-C------CCCeeEEEEccCCCeEEEe
Q 008356          140 GTSNGRVVFYDIRGKPQPLTVLRACS-S------SEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v~~l~~~~-h------~~~VtsLafspdg~~Las~  185 (568)
                      ....+.|.++|.+..  ++..+.... .      -...-.|+|.++|...+++
T Consensus       191 S~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          191 SHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             ETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             ECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            667888999998765  445444321 1      1256789999987654443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.86  E-value=0.00071  Score=74.90  Aligned_cols=140  Identities=11%  Similarity=0.057  Sum_probs=94.8

Q ss_pred             cEEEEECCCCceeEEeeCCCC---------CcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeEEeccC-----
Q 008356           17 DLILHNLASGAKAAELKDPNE---------QVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-----   80 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~---------~~Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H-----   80 (568)
                      .|..+|..+|+.+..++..+.         ..+. +....+|+  .+++.++.+|.++++|..+++.....-...     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            599999999999887764221         2221 22234563  367888999999999998887432221111     


Q ss_pred             -------CCCe--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 008356           81 -------SAPT--------------------------AGISFSSDDKIIASVG---------------------------  100 (568)
Q Consensus        81 -------~~~V--------------------------tslafsPdg~~LaSgs---------------------------  100 (568)
                             ..++                          ..++++|+..+++...                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                   0111                          2357788767666553                           


Q ss_pred             ----------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356          101 ----------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus       101 ----------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                                .++.|..||+.+++.+..+.....+....+...+..+++++.||.|++||.++++..
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                      357899999999998887765555544444445678888999999999999998543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.85  E-value=0.0042  Score=64.97  Aligned_cols=184  Identities=10%  Similarity=-0.050  Sum_probs=118.4

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI   87 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl   87 (568)
                      +|+.+ ....|+.+++........+.  .......++|.+.+..++++-...+.|+.+++++... ...+.........+
T Consensus        89 ~l~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~~~~p~gl  164 (386)
T 3v65_B           89 VLLFA-NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTGLESPGGL  164 (386)
T ss_dssp             EEEEE-CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEECSSCSCCCCE
T ss_pred             eeEee-cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEeCCCCCccEE
Confidence            34433 44578888886655444443  2334677999987765777766788999999987652 23333334456788


Q ss_pred             EEcCC-CCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEE-cC-CeEEEEECCCCCCceEEEee
Q 008356           88 SFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SN-GRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        88 afsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs-~D-G~V~VWDlrt~~~~v~~l~~  163 (568)
                      ++.+. ++++++-...+.|.++++........+. .......++++|.+..|+... .+ +.|..++++.... ..+.. 
T Consensus       165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-  242 (386)
T 3v65_B          165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD-  242 (386)
T ss_dssp             EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-
T ss_pred             EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEE-
Confidence            99984 4455555667889999987654433332 335689999999766666554 34 7899999887532 22222 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                       ........|+|++++.           .++++-...+.|..+|+.
T Consensus       243 -~~~~~PnGlavd~~~~-----------~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          243 -THLFWPNGLTIDYAGR-----------RMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             -SSCSCEEEEEEEGGGT-----------EEEEEETTTTEEEEECTT
T ss_pred             -CCCCCeeeEEEeCCCC-----------EEEEEECCCCEEEEEeCC
Confidence             2334578899998643           344445556777777764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.84  E-value=0.00034  Score=78.91  Aligned_cols=155  Identities=14%  Similarity=0.200  Sum_probs=104.3

Q ss_pred             ccCCCCEEEEEECCC-------------------cEEEEECCCCceeEEeeCC-CC-------CcEEEEEEccCCC--eE
Q 008356            2 YNCKDEHLASISLSG-------------------DLILHNLASGAKAAELKDP-NE-------QVLRVLDYSRNSR--HL   52 (568)
Q Consensus         2 fSpdG~~LasGs~DG-------------------~V~VWDl~tg~~v~~l~~~-h~-------~~Vs~Lafspdg~--~l   52 (568)
                      |.+++++++.+..++                   .|..+|..+|+.+..++.. |.       .......+..+++  .+
T Consensus       237 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~  316 (668)
T 1kv9_A          237 YDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKV  316 (668)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEE
Confidence            445677888887665                   3999999999998887753 21       1222223333453  36


Q ss_pred             EEEEeCCCeEEEEECCCCCceeEEeccC-----------CCC------------------------eEEEEEcCCCCEEE
Q 008356           53 LVTAGDDGTLHLWDTTGRSPKVSWLKQH-----------SAP------------------------TAGISFSSDDKIIA   97 (568)
Q Consensus        53 LaTgs~DGtV~VWDl~t~~~~v~~l~~H-----------~~~------------------------VtslafsPdg~~La   97 (568)
                      ++.++.+|.++++|..+++.+...-...           ..+                        -..++++|+..+++
T Consensus       317 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~y  396 (668)
T 1kv9_A          317 LMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVY  396 (668)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred             EEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEE
Confidence            8889999999999998887431110000           000                        01256777666555


Q ss_pred             EE------------------------------------eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE
Q 008356           98 SV------------------------------------GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        98 Sg------------------------------------s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs  141 (568)
                      ..                                    ..+|.|+.||+.+++.+..+..........+...+.++++++
T Consensus       397 v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~  476 (668)
T 1kv9_A          397 IPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT  476 (668)
T ss_dssp             EEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred             EeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC
Confidence            42                                    134789999999999988776555555455556788999999


Q ss_pred             cCCeEEEEECCCCCC
Q 008356          142 SNGRVVFYDIRGKPQ  156 (568)
Q Consensus       142 ~DG~V~VWDlrt~~~  156 (568)
                      .|+.|++||.++++.
T Consensus       477 ~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          477 AAGQMHAYSADKGEA  491 (668)
T ss_dssp             TTSEEEEEETTTCCE
T ss_pred             CcccchhhhhhcChh
Confidence            999999999998853

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.83  E-value=0.0012  Score=66.16  Aligned_cols=177  Identities=11%  Similarity=0.073  Sum_probs=103.0

Q ss_pred             ccCCCCEEEEEECC--CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--
Q 008356            2 YNCKDEHLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--   77 (568)
Q Consensus         2 fSpdG~~LasGs~D--G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l--   77 (568)
                      +.++|+++++....  ..|..+|..+++...............++..+.+ .++++-..++.|+++|.......+...  
T Consensus        79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~  157 (306)
T 2p4o_A           79 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHP  157 (306)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred             EcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECC
Confidence            56788865544332  2477778777775433332222334455555544 345554468999999986542112111  


Q ss_pred             -------ccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCC-Cce--eeEeecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           78 -------KQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGS-RRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        78 -------~~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt-~~~--v~~~~h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                             .......+.+  ++++++|+.+ ...+.|..||+.. ++.  ...+........++++++|+++++....+.|
T Consensus       158 ~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          158 MLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             GGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             ccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeE
Confidence                   1112245666  7777766554 4677999999875 322  2222222456778999999887777778899


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEc---cCCCeEE
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQ---RAKPVFI  183 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafs---pdg~~La  183 (568)
                      .++|....  ..............++++|.   ++++.|.
T Consensus       236 ~~~~~~G~--~~~~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          236 VRIAPDRS--TTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             EEECTTCC--EEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             EEECCCCC--EEEEeecccccCCceEEEEecccCCCCEEE
Confidence            99998632  21121111223568899998   6655443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.79  E-value=0.0067  Score=60.70  Aligned_cols=176  Identities=8%  Similarity=0.029  Sum_probs=101.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-CC-eEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DG-TLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-DG-tV~VWDl~t~~~~v~~l~   78 (568)
                      +|+++|+++++-..++.|+.||... +....+.  .......+++.++++ ++++... ++ .|..+|..+++.....-.
T Consensus        38 a~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~--~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~  113 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT--VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL  113 (306)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTC-CEEEEEE--CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe--CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence            3678888666555788999999754 4444443  234678899999997 5555443 22 477777666652211111


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeEe----------ecCCCeEEEEEecCCCEEEEEE-cCCeE
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI----------TYEAPFSSLAFIDDDWILTAGT-SNGRV  146 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~-v~~~----------~h~~~ItsLafsPdg~~LasGs-~DG~V  146 (568)
                      ........++..+++..+++-..++.|+++|...++. +...          ..-...+.+  ++++++|+++. ..+.|
T Consensus       114 ~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I  191 (306)
T 2p4o_A          114 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLL  191 (306)
T ss_dssp             TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEE
T ss_pred             CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEE
Confidence            2233345666555555455544688999999876531 1110          011234455  78887766655 57889


Q ss_pred             EEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          147 VFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       147 ~VWDlrt~~~--~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .+||+.....  ....+..   ......++++++|+++++.
T Consensus       192 ~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          192 LRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             EEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEEC
T ss_pred             EEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEe
Confidence            9999875211  1122221   1335667888876554443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.77  E-value=0.00069  Score=67.91  Aligned_cols=172  Identities=13%  Similarity=0.151  Sum_probs=106.5

Q ss_pred             eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEE-EEeCCCe
Q 008356           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIA-SVGLDKK  104 (568)
Q Consensus        28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~La-Sgs~DGt  104 (568)
                      .+.++..........|.|+ ++ .++++.+.+|  .|+++|+.+++. +..+.- ..........++++.|+ ..-.++.
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT-LQQIEL-GKRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE-EEEEEC-CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE-EEEEec-CCccceeEEEEeCCEEEEEEeeCCE
Confidence            4556653234556889998 55 4778888776  899999999884 333332 22333332333344444 4446889


Q ss_pred             EEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC---CCeeEEEEccCCCe
Q 008356          105 LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS---EAVSSLCWQRAKPV  181 (568)
Q Consensus       105 V~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~---~~VtsLafspdg~~  181 (568)
                      +.+||..+.+.+..+.....-..++  ++++.|+....++.|.++|..+.+ ....+......   ..++.+.|. +|  
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe~~-~G--  182 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEELPELNELEWV-DG--  182 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEECCCEEEEEEE-TT--
T ss_pred             EEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCccccccceeEEE-CC--
Confidence            9999999999999987654333444  567777777778889999999874 33333321112   223446654 33  


Q ss_pred             EEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          182 FIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       182 Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                                .+++..-.++.|.+.|+........+..
T Consensus       183 ----------~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          183 ----------EIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             ----------EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ----------EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence                      3334444467777777776665544433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.76  E-value=0.00053  Score=68.08  Aligned_cols=176  Identities=13%  Similarity=0.063  Sum_probs=108.6

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT   84 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V   84 (568)
                      +++ |.+++.++.|..+|.. ++.+..+.. ....+.++.+.+++.  ++.++  +.|..|| .+++. ..........+
T Consensus       147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~--l~v~t--~~l~~~d-~~g~~-~~~~~~~~~~~  217 (330)
T 3hxj_A          147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGT--IYFGS--DKVYAIN-PDGTE-KWNFYAGYWTV  217 (330)
T ss_dssp             TSC-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCC--EEEES--SSEEEEC-TTSCE-EEEECCSSCCC
T ss_pred             CCE-EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCE--EEEEe--CEEEEEC-CCCcE-EEEEccCCcce
Confidence            444 6667788999999988 877766664 344566677777776  44445  8899999 55442 33344445668


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356           85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA  163 (568)
Q Consensus        85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~-~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~  163 (568)
                      .++...+++. |..++.++.|..+|. +++.+..+... ..+..+.+.+++ .|.+++.+|.|..+|.. .+ ....+. 
T Consensus       218 ~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~-g~-~~~~~~-  291 (330)
T 3hxj_A          218 TRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD-GT-EKWNFE-  291 (330)
T ss_dssp             SCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT-SC-EEEEEE-
T ss_pred             eceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC-Cc-EEEEEE-
Confidence            8888887765 555677888888884 55555555332 334455555555 56778888899999963 32 222232 


Q ss_pred             cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                       .....+.++....+|.             ++.++.+|.+++....
T Consensus       292 -~~~~~~~~~~~d~~g~-------------l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          292 -TGSWIIATPVIDENGT-------------IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             -CSSCCCSCCEECTTCC-------------EEEECTTSCEEEEEC-
T ss_pred             -cCCccccceEEcCCCE-------------EEEEcCCCeEEEEecc
Confidence             2234455555545433             2334447777776543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.76  E-value=0.0016  Score=72.33  Aligned_cols=141  Identities=14%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             CcEEEEECCCCceeEEeeCC-CC--------CcEEEEEEc-cCCC--eEEEEEeCCCeEEEEECCCCCceeEEeccC---
Q 008356           16 GDLILHNLASGAKAAELKDP-NE--------QVLRVLDYS-RNSR--HLLVTAGDDGTLHLWDTTGRSPKVSWLKQH---   80 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~-h~--------~~Vs~Lafs-pdg~--~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H---   80 (568)
                      +.|..+|..+|+.+-.++.. |.        ..+. +... .+|+  .+++.++.+|.|+++|..+++.+...-...   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            58999999999998887642 21        1221 2222 3564  378889999999999998877432211111   


Q ss_pred             ---------CCC--------------------------------eEEEEEcCCCCEEEEEe-------------------
Q 008356           81 ---------SAP--------------------------------TAGISFSSDDKIIASVG-------------------  100 (568)
Q Consensus        81 ---------~~~--------------------------------VtslafsPdg~~LaSgs-------------------  100 (568)
                               ..+                                -..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                     000                                01345666444444432                   


Q ss_pred             --------------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356          101 --------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP  157 (568)
Q Consensus       101 --------------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~  157 (568)
                                    .+|.|..||+.+++.+.......++..-.+...+.++++|+.||.|+.||.++++..
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence                          367899999999998877754444332222334678888999999999999998643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.76  E-value=0.0074  Score=62.22  Aligned_cols=179  Identities=9%  Similarity=-0.035  Sum_probs=114.2

Q ss_pred             CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC-
Q 008356           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD-   92 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd-   92 (568)
                      ....|+..++........+..  ......++|++.+..++++-...+.|+.+++.+... ...+.........+++.+. 
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~~~~p~glavd~~~  127 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTGLESPGGLAVDWVH  127 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTT
T ss_pred             cccceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEEeCCCCCccEEEEecCC
Confidence            345688888765544433332  234677999987775667766788999999987652 2333333445678999984 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE-cC-CeEEEEECCCCCCceEEEeecCCCCC
Q 008356           93 DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SN-GRVVFYDIRGKPQPLTVLRACSSSEA  169 (568)
Q Consensus        93 g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs-~D-G~V~VWDlrt~~~~v~~l~~~~h~~~  169 (568)
                      ++++++-...+.|.+.++........+ ........++++|.+..|+... .+ +.|..++++....  ..+.. ..-..
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~-~~~~~  204 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD-THLFW  204 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EESCC-SSCSC
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc--EEEEE-CCCCC
Confidence            455555566789999998765443333 2335678999999666555544 44 7899999887532  22211 22345


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       170 VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ...|+|++++..           ++++-...+.|..+|+.
T Consensus       205 PnGla~d~~~~~-----------lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          205 PNGLTIDYAGRR-----------MYWVDAKHHVIERANLD  233 (349)
T ss_dssp             EEEEEEETTTTE-----------EEEEETTTTEEEEEETT
T ss_pred             cceEEEeCCCCE-----------EEEEECCCCEEEEEeCC
Confidence            788999986443           34444445666666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.75  E-value=0.018  Score=59.23  Aligned_cols=169  Identities=8%  Similarity=-0.038  Sum_probs=105.7

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |++.++.|+... ..+.|+.+++........+.. .......+++.+.+.+++++-...+.|.+.++++... ...+...
T Consensus        80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~  157 (349)
T 3v64_C           80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQS  157 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTT
T ss_pred             EeccccEEEEEeccCCceEEEecCCCCceEEEeC-CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCC
Confidence            455555555554 456777777765443333322 2233456888877666777777788999999987653 2333344


Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCC-CeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIA-SVGLD-KKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~La-Sgs~D-GtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~  156 (568)
                      ....+.++++|.+..|+ +-... +.|..+++........+. .-.....+++++++..|+.+. ..+.|..+|++....
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~  237 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  237 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce
Confidence            56689999999555544 44444 789999987544333332 344578999998776666654 567899999986532


Q ss_pred             ceEEEeecCCCCCeeEEEE
Q 008356          157 PLTVLRACSSSEAVSSLCW  175 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLaf  175 (568)
                       ..++.  ........+++
T Consensus       238 -~~~~~--~~~~~P~giav  253 (349)
T 3v64_C          238 -KAVIS--QGLPHPFAITV  253 (349)
T ss_dssp             -EEEEC--SSCSSEEEEEE
T ss_pred             -EEEEe--CCCCCceEEEE
Confidence             22232  22344566666

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.75  E-value=0.0033  Score=64.22  Aligned_cols=185  Identities=8%  Similarity=-0.012  Sum_probs=116.9

Q ss_pred             EEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356            8 HLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA   85 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt   85 (568)
                      +|+.+ ....|+.+++....  ....+.  .......++|.+.+..++++-..++.|+.+++.+.......+........
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            34433 35679999987653  112222  11235578999876657777777889999999776422222333334577


Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEEE
Q 008356           86 GISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        86 slafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs--~DG~V~VWDlrt~~~~v~~l  161 (568)
                      .+++.+ .++++++-...+.|.++++........+ ........++++|.+..|+...  ..+.|..++++.... ..++
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~  161 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII  161 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE
Confidence            899997 4555555567789999998765443333 3445688999999766666665  357899999886532 2222


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .  ..-.....|+|++++..           ++++-...+.|..+|+.
T Consensus       162 ~--~~l~~Pnglavd~~~~~-----------lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          162 N--SEIYWPNGLTLDYEEQK-----------LYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             C--SSCSCEEEEEEETTTTE-----------EEEEETTTTEEEEEETT
T ss_pred             E--CCCCCccEEEEeccCCE-----------EEEEECCCCEEEEEcCC
Confidence            2  22345788999986443           34444456667776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.70  E-value=0.015  Score=61.06  Aligned_cols=185  Identities=7%  Similarity=-0.055  Sum_probs=119.6

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCe
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPT   84 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---~~v~~l~~H~~~V   84 (568)
                      +|+.. ....|+..++........+.  ....+..|+|++.+..++++-..++.|+.+++.+..   .....+.......
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEe-ccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            44444 35688999987665444443  334567899998777566766678899999987621   1233344455678


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEE
Q 008356           85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        85 tslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~~~v~~  160 (568)
                      ..+++.+ .++++++-...+.|.+.|+........+. .......|+++|.+.+|+....  .+.|...+++.... ..+
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~  240 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL  240 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEE
Confidence            8999998 55555565677899999998765544443 4456899999997666666553  47899999987532 222


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +.  ..-.....|++++++..           ++++-.....|..+|+.
T Consensus       241 ~~--~~l~~P~glavd~~~~~-----------lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          241 VT--ENIQWPNGITLDLLSGR-----------LYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             EC--SSCSCEEEEEEETTTTE-----------EEEEETTTTEEEEEETT
T ss_pred             EE--CCCCceEEEEEEeCCCE-----------EEEEECCCCEEEEEeCC
Confidence            22  23356789999986444           34444445667766653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.63  E-value=0.003  Score=62.62  Aligned_cols=171  Identities=18%  Similarity=0.203  Sum_probs=107.3

Q ss_pred             eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCe--EEEEEcCCCCEEEEEeCCC
Q 008356           28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPT--AGISFSSDDKIIASVGLDK  103 (568)
Q Consensus        28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l~~H~~~V--tslafsPdg~~LaSgs~DG  103 (568)
                      .+.++.......+..+.|+. + .++.+.+.+|  .|+++|+.+++. +..+.-. ...  -.+++. .++..+..-.++
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~-~~~ly~ltw~~~   85 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAW-RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEE-TTEEEEEESSSS
T ss_pred             EEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEe-CCEEEEEEeeCC
Confidence            45566422345678899986 3 4777777765  899999999874 3333222 222  233443 344445556788


Q ss_pred             eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCC
Q 008356          104 KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKP  180 (568)
Q Consensus       104 tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~  180 (568)
                      .+.+||..+.+.+..+.....-..++  +++..|++...++.|.++|..+.+ ....+....+..   .++.+.|. +  
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe~~-~--  159 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELEWV-N--  159 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-T--
T ss_pred             EEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCcccccceeeEEe-C--
Confidence            99999999999999987655444554  567777777778999999999874 334443212222   33455554 2  


Q ss_pred             eEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356          181 VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       181 ~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                                +.+++..-.+..|.+.|++.......+..
T Consensus       160 ----------G~lyanvw~s~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          160 ----------GELLANVWLTSRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             ----------TEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred             ----------CEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence                      23344444466777777777665555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.62  E-value=0.016  Score=60.47  Aligned_cols=188  Identities=9%  Similarity=-0.031  Sum_probs=114.7

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |.+.++.|+... ..+.|+.+++........+.. .......+++.+.+.+++++-...+.|.+.++++... ...+...
T Consensus       123 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~  200 (386)
T 3v65_B          123 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQS  200 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSS
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCC
Confidence            455555555554 456788888765543333332 2223356788877666777777788999999876652 3333444


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVG-LD-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs-~D-GtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~  156 (568)
                      ......+++.|.+..|+... .. +.|..+++......... ..-.....|+|+|++..|+.+. ..+.|..+|++....
T Consensus       201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  280 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred             CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence            46789999999665555444 44 78999998755443333 2334578999998766666554 567899999886532


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                       ..++.  ........|++..             +.++++....+.|..+|
T Consensus       281 -~~~~~--~~~~~P~giav~~-------------~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          281 -KAVIS--QGLPHPFAITVFE-------------DSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             -EEEEC--SSCSSEEEEEEET-------------TEEEEEETTTTEEEEEE
T ss_pred             -EEEEE--CCCCCceEEEEEC-------------CEEEEeeCCCCeEEEEE
Confidence             22332  2234456666632             23444444455666555

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.61  E-value=0.053  Score=56.92  Aligned_cols=172  Identities=12%  Similarity=-0.033  Sum_probs=105.2

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      |++.++.|+... ..+.|+.+++....   ....+..........|++...+++++++-...+.|.+.++++... ...+
T Consensus       119 ~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~  197 (400)
T 3p5b_L          119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF  197 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEE
T ss_pred             eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEE
Confidence            455555555554 34667777765321   112222223345677899886666777777788999999987653 2333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVG-L-DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs-~-DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt  153 (568)
                      .........|++.|.+.+|+... . .+.|...++........+. .-.....|++++++..|+.+. ..+.|..+|++.
T Consensus       198 ~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          198 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            33445689999999665555544 2 4689999987654443332 335788999998877776665 567899999987


Q ss_pred             CCCceEEEeecCCCCCeeEEEE
Q 008356          154 KPQPLTVLRACSSSEAVSSLCW  175 (568)
Q Consensus       154 ~~~~v~~l~~~~h~~~VtsLaf  175 (568)
                      ... ..++...........|++
T Consensus       278 ~~~-~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          278 GNR-KTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             CCC-EEEEECSSTTSSEEEEEE
T ss_pred             Ccc-EEEEeCCCCCCCCEEEEE
Confidence            532 233332122234456665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.58  E-value=0.0082  Score=62.09  Aligned_cols=152  Identities=13%  Similarity=0.151  Sum_probs=103.9

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEE-eeC-----CCCCcEEEEEE---ccCCCeEEEEEe-------------C
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAE-LKD-----PNEQVLRVLDY---SRNSRHLLVTAG-------------D   58 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~-l~~-----~h~~~Vs~Laf---spdg~~lLaTgs-------------~   58 (568)
                      |++.+.+|..++ ..|.|..||...+..... +..     .....+..|.|   .++++ ++++..             .
T Consensus        20 wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g   98 (334)
T 2p9w_A           20 YDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHG   98 (334)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSS
T ss_pred             CcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccccccccccCC
Confidence            666667777777 689999999875544333 221     01124578999   68865 666543             2


Q ss_pred             CCeEEEEECC---CCCceeE-Eecc-----------CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeeEee--
Q 008356           59 DGTLHLWDTT---GRSPKVS-WLKQ-----------HSAPTAGISFSSDDKIIASVGLD-KKLYTYDPGSRRPSSCIT--  120 (568)
Q Consensus        59 DGtV~VWDl~---t~~~~v~-~l~~-----------H~~~VtslafsPdg~~LaSgs~D-GtV~IWDlrt~~~v~~~~--  120 (568)
                      +..|..||+.   +++.... .+..           -...+++++..++|+..++++.. +.|..+|...........  
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            6789999998   5553222 2211           11248899999999999999988 888888876543222221  


Q ss_pred             ----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356          121 ----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       121 ----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                          .....+.|+++|+|+.|++....|.|..+|++..
T Consensus       179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence                1223679999999999999877999999999843

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.56  E-value=0.0037  Score=69.75  Aligned_cols=154  Identities=9%  Similarity=0.008  Sum_probs=100.2

Q ss_pred             CCCCEEEEEECC----------------CcEEEEECCCCceeEEeeCCCCC---------cEEEEEEc-cCCC--eEEEE
Q 008356            4 CKDEHLASISLS----------------GDLILHNLASGAKAAELKDPNEQ---------VLRVLDYS-RNSR--HLLVT   55 (568)
Q Consensus         4 pdG~~LasGs~D----------------G~V~VWDl~tg~~v~~l~~~h~~---------~Vs~Lafs-pdg~--~lLaT   55 (568)
                      ++..+|+.+..+                +.|..+|.++|+.+-.++..+.+         .+. +... .+|+  .+++.
T Consensus       250 ~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~  328 (599)
T 1w6s_A          250 PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTH  328 (599)
T ss_dssp             TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEE
T ss_pred             CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEE
Confidence            456677777655                37999999999998887754321         121 2222 4563  46788


Q ss_pred             EeCCCeEEEEECCCCCceeEEecc------------CCCCe--------------------------EEEEEcCCCCEEE
Q 008356           56 AGDDGTLHLWDTTGRSPKVSWLKQ------------HSAPT--------------------------AGISFSSDDKIIA   97 (568)
Q Consensus        56 gs~DGtV~VWDl~t~~~~v~~l~~------------H~~~V--------------------------tslafsPdg~~La   97 (568)
                      ++.+|.++++|..+++.+...-..            ...++                          ..++++|+..+++
T Consensus       329 ~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~y  408 (599)
T 1w6s_A          329 PDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFF  408 (599)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred             ECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEE
Confidence            899999999999888743222111            01111                          2355666555554


Q ss_pred             EE---------------------------------e------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEE
Q 008356           98 SV---------------------------------G------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        98 Sg---------------------------------s------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~La  138 (568)
                      +.                                 +      .+|.|..||+.+++.+....+..+...-.+...+.+++
T Consensus       409 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf  488 (599)
T 1w6s_A          409 MGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVF  488 (599)
T ss_dssp             EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEE
T ss_pred             EeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEE
Confidence            42                                 1      34789999999999887775444333222333567888


Q ss_pred             EEEcCCeEEEEECCCCCCce
Q 008356          139 AGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v  158 (568)
                      +++.|+.|+.||.++++...
T Consensus       489 ~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          489 YGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             EECTTSEEEEEETTTCCEEE
T ss_pred             EECCCCeEEEEECCCCCEEE
Confidence            89999999999999986443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.53  E-value=0.03  Score=57.03  Aligned_cols=190  Identities=9%  Similarity=-0.035  Sum_probs=111.4

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCcee-EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v-~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      |.+.++.|+... ..+.|+.+++..+... ..+.. .-.....+++.+.+.+++++-...+.|.++++++... ......
T Consensus        42 ~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~  119 (318)
T 3sov_A           42 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQ  119 (318)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS
T ss_pred             EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeC
Confidence            344344444443 3456666666544211 11211 1123456888876666777777788999999987653 223334


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKP  155 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~  155 (568)
                      .......+++.|.+..|+...  ..+.|..+++........+ ..-.....+++++++..|+.+. ..+.|..+|++...
T Consensus       120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence            456689999999655555554  3578999998754333333 2334578999999766666654 56889999998643


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      . ..++.  ........+++..             +.++++....+.|..+|..
T Consensus       200 ~-~~~~~--~~~~~P~glav~~-------------~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          200 R-QAVVK--GSLPHPFALTLFE-------------DILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             C-EEEEC--SCCSCEEEEEEET-------------TEEEEEETTTTEEEEEETT
T ss_pred             e-EEEec--CCCCCceEEEEeC-------------CEEEEEecCCCeEEEEECC
Confidence            2 22222  2234455666543             2344444445666666653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.47  E-value=0.0048  Score=68.26  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=70.7

Q ss_pred             CCEEEEEEC------CCcEEEEECCCCceeEEeeCCCCC-------------------------------------cEEE
Q 008356            6 DEHLASISL------SGDLILHNLASGAKAAELKDPNEQ-------------------------------------VLRV   42 (568)
Q Consensus         6 G~~LasGs~------DG~V~VWDl~tg~~v~~l~~~h~~-------------------------------------~Vs~   42 (568)
                      +..++++..      +|.|+.+|.++|+.+..+......                                     ....
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            445666654      789999999999988776642110                                     0012


Q ss_pred             EEEccCCCeEEEEEeCC----------------CeEEEEECCCCCceeEEec-cCC--------CCeEEEEEcCCCC---
Q 008356           43 LDYSRNSRHLLVTAGDD----------------GTLHLWDTTGRSPKVSWLK-QHS--------APTAGISFSSDDK---   94 (568)
Q Consensus        43 Lafspdg~~lLaTgs~D----------------GtV~VWDl~t~~~~v~~l~-~H~--------~~VtslafsPdg~---   94 (568)
                      +++.++.. +++.+..+                +.|..+|.++++...+.-. .|.        .++. +....+++   
T Consensus       240 ~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          240 YAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             EEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            45666655 45555432                3699999998874332221 121        2221 22223664   


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeEee
Q 008356           95 IIASVGLDKKLYTYDPGSRRPSSCIT  120 (568)
Q Consensus        95 ~LaSgs~DGtV~IWDlrt~~~v~~~~  120 (568)
                      .++.++.+|.|+++|..+++.+..+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeec
Confidence            57788899999999999998876653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.0033  Score=66.96  Aligned_cols=149  Identities=8%  Similarity=0.070  Sum_probs=95.6

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEE
Q 008356            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSW   76 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~~~~v~~   76 (568)
                      |+| ++..|+++...+.|+.+|+..+.......  .......|+|+++++.++++...++    .+.+++..........
T Consensus       144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~  221 (430)
T 3tc9_A          144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITE  221 (430)
T ss_dssp             EETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEE
T ss_pred             ECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeee
Confidence            455 35567666665789999987655443333  3445678999999984444443322    3444554333211122


Q ss_pred             eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEE-cCCeEEEEECC
Q 008356           77 LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIR  152 (568)
Q Consensus        77 l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlr  152 (568)
                      +.. ......++++| ++.++++-..++.|..+|...+.......  .......++|+|++++|++.. .++.|..++.+
T Consensus       222 l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          222 LTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            222 33467788999 77777776678899999998765433332  234578999999999665554 67889998876


Q ss_pred             C
Q 008356          153 G  153 (568)
Q Consensus       153 t  153 (568)
                      .
T Consensus       301 ~  301 (430)
T 3tc9_A          301 W  301 (430)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.40  E-value=0.0037  Score=71.23  Aligned_cols=135  Identities=11%  Similarity=0.072  Sum_probs=87.2

Q ss_pred             cEEEEEEc-cCCCeEEEEEeCCC----eEEEEECCCC-CceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 008356           39 VLRVLDYS-RNSRHLLVTAGDDG----TLHLWDTTGR-SPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-----KKLYT  107 (568)
Q Consensus        39 ~Vs~Lafs-pdg~~lLaTgs~DG----tV~VWDl~t~-~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D-----GtV~I  107 (568)
                      .+...+|+ |+|+.++++...+|    .|+++|+.++ +.....+.   .....+.|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            56778999 99996666655554    4999999887 52111111   113468899999988877765     36889


Q ss_pred             EECCCCce--eeEe--ecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEcc
Q 008356          108 YDPGSRRP--SSCI--TYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       108 WDlrt~~~--v~~~--~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v--~~l~~~~h~~~VtsLafsp  177 (568)
                      +++.+++.  ..++  ........+.|+|||++|+....   ...|+++|+.+.....  ..+. .........+.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PREKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CCCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cCCCCceEEEeeee
Confidence            99987653  2333  23345678899999999887663   3468899998753222  2222 12344555565544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.40  E-value=0.034  Score=55.25  Aligned_cols=143  Identities=15%  Similarity=0.199  Sum_probs=94.6

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      ...+..++|+|++..++++...++.|...|.. ++. .+.+. .-....-.|++.+++.++++.-.++.|.++++.....
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            34689999999887677778889999999998 442 33332 2235588899998888777766788999998865442


Q ss_pred             ---eeEee-------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CCCceEEEee-----cCCCCCeeEEEEccC
Q 008356          116 ---SSCIT-------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRA-----CSSSEAVSSLCWQRA  178 (568)
Q Consensus       116 ---v~~~~-------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt--~~~~v~~l~~-----~~h~~~VtsLafspd  178 (568)
                         +....       ....+..++|+|.++.|+++.+.....||.++.  ....+..+..     ..+...+.+++++|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence               12221       234468999999988888877766556665542  1112233321     123345788999996


Q ss_pred             CCe
Q 008356          179 KPV  181 (568)
Q Consensus       179 g~~  181 (568)
                      ...
T Consensus       184 tg~  186 (255)
T 3qqz_A          184 KNT  186 (255)
T ss_dssp             TTE
T ss_pred             CCe
Confidence            433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.38  E-value=0.0069  Score=68.19  Aligned_cols=195  Identities=13%  Similarity=0.038  Sum_probs=115.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCc----------EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQV----------LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~----------Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~   75 (568)
                      +..|++++.++.|+.+|..+|+.+-.+.......          ...+.+.  +. .++.++.|+.|+.+|..+++....
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD-KVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC-EEEEEcCCCEEEEEECCCCCEeee
Confidence            5677888889999999999999988776422110          1112222  33 577888999999999998884433


Q ss_pred             EeccCCCCeEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCceeeEeecC--C----------------------
Q 008356           76 WLKQHSAPTAGISFSS--DDKIIASVGL------DKKLYTYDPGSRRPSSCITYE--A----------------------  123 (568)
Q Consensus        76 ~l~~H~~~VtslafsP--dg~~LaSgs~------DGtV~IWDlrt~~~v~~~~h~--~----------------------  123 (568)
                      ...........+...|  .+..++.+..      ++.|+.+|.++++.+..+...  .                      
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            2221110001111111  2344555432      589999999999988776321  0                      


Q ss_pred             --------CeEEEEEecCCCEEEEEEcCCe-------------------EEEEECCCCCCceEEEeecCCC-------CC
Q 008356          124 --------PFSSLAFIDDDWILTAGTSNGR-------------------VVFYDIRGKPQPLTVLRACSSS-------EA  169 (568)
Q Consensus       124 --------~ItsLafsPdg~~LasGs~DG~-------------------V~VWDlrt~~~~v~~l~~~~h~-------~~  169 (568)
                              ....++++++...++++..++.                   |..+|.++++...+ +....|.       .+
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~-~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH-YQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE-EESSTTCCSCCCCCSC
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE-eecCCCccccccCCCC
Confidence                    1124788888889998887764                   99999998853322 2222232       12


Q ss_pred             eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       170 VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +....+..+|+         ...+++.++.++.++++|......
T Consensus       302 ~~~~d~~~~G~---------~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          302 ITLAELNIDGK---------PRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             EEEEEEEETTE---------EEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cEEEEeccCCc---------EEEEEEEECCCCEEEEEECCCCCE
Confidence            22122222221         112455666677787777665443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.36  E-value=0.0018  Score=72.36  Aligned_cols=150  Identities=16%  Similarity=0.129  Sum_probs=88.6

Q ss_pred             cC-CCCEEEEEECCC-----------cEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEEC
Q 008356            3 NC-KDEHLASISLSG-----------DLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDT   67 (568)
Q Consensus         3 Sp-dG~~LasGs~DG-----------~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl   67 (568)
                      .+ ++++++.|+.+.           .+.+||+.+++  .+..+...+......+++..+++ +++.|+ .+..+.+||.
T Consensus       194 ~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~  272 (656)
T 1k3i_A          194 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDS  272 (656)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEG
T ss_pred             EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecC
Confidence            34 778888887643           58899988765  33344332333444567778887 788887 4568999998


Q ss_pred             CCCCceeEEecc-C-CCCeEEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCceeeEe-----ecCCCeEEEEEecCC
Q 008356           68 TGRSPKVSWLKQ-H-SAPTAGISFSSDDKIIASVG-LD-----KKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDD  134 (568)
Q Consensus        68 ~t~~~~v~~l~~-H-~~~VtslafsPdg~~LaSgs-~D-----GtV~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg  134 (568)
                      .+..  ...+.. + ...-.++++.+++++++.|+ .+     ..+.+||..+.+-...-     .....-....+..++
T Consensus       273 ~t~~--W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~  350 (656)
T 1k3i_A          273 SSDS--WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  350 (656)
T ss_dssp             GGTE--EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             cCCc--eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCC
Confidence            7654  222211 1 11223455667899999998 44     46999999886543320     000000001222355


Q ss_pred             CEEEEEEcCC---------eEEEEECCCCC
Q 008356          135 WILTAGTSNG---------RVVFYDIRGKP  155 (568)
Q Consensus       135 ~~LasGs~DG---------~V~VWDlrt~~  155 (568)
                      +.++.|+.+|         .|..||.....
T Consensus       351 ~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          351 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            5566665554         46788887653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.34  E-value=0.046  Score=62.88  Aligned_cols=179  Identities=7%  Similarity=-0.048  Sum_probs=113.5

Q ss_pred             CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCeEEEEEc
Q 008356           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPTAGISFS   90 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---~~v~~l~~H~~~Vtslafs   90 (568)
                      ....|+..++........+.  ....+..|+|.+.+..++++-...+.|+.+++.+..   .....+.........|++.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            44568888876555444333  234566799998766577777778899999987631   1233344355667889999


Q ss_pred             CCCC-EEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEEEeecCC
Q 008356           91 SDDK-IIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus        91 Pdg~-~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                      +.++ ++++-...+.|.+.++........+. .......|+++|.+.+|+....  .+.|.+.++..... ..++.  ..
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~--~~  556 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT--EN  556 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEEC--SS
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEe--CC
Confidence            8664 44555577899999998655444443 4456899999998666666553  37899999987632 22222  23


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      -.....|++++.+..|           +++-.....|...|+
T Consensus       557 l~~P~GLavD~~~~~L-----------YwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRL-----------YWVDSKLHSISSIDV  587 (791)
T ss_dssp             CSCEEEEEEETTTTEE-----------EEEETTTTEEEEEET
T ss_pred             CCCceEEEEecCCCeE-----------EEEeCCCCcEEEEec
Confidence            3578899999764443           333344455666655

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.32  E-value=0.014  Score=62.16  Aligned_cols=148  Identities=9%  Similarity=0.043  Sum_probs=92.9

Q ss_pred             ccCC--CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC---Ce-EEEEECCCCCceeE
Q 008356            2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GT-LHLWDTTGRSPKVS   75 (568)
Q Consensus         2 fSpd--G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D---Gt-V~VWDl~t~~~~v~   75 (568)
                      |.++  +..|+++...+.|+.+|+.+++......  .......|+|+++++ ++++-..+   .. +..++.........
T Consensus       146 vd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~  222 (433)
T 4hw6_A          146 FDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERL  222 (433)
T ss_dssp             ECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred             EccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccc
Confidence            4553  4556666555889999987776554333  344578899999998 66654422   22 33333332221111


Q ss_pred             EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcee-eEee--cCCCeEEEEEecCCCEEEEEE-cCCeEEEEE
Q 008356           76 WLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS-SCIT--YEAPFSSLAFIDDDWILTAGT-SNGRVVFYD  150 (568)
Q Consensus        76 ~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v-~~~~--h~~~ItsLafsPdg~~LasGs-~DG~V~VWD  150 (568)
                      .+. .......+++++ +++++++-..++.|+.+|..++... ..+.  .......++|+|++++|+++. ..+.|+.++
T Consensus       223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~  301 (433)
T 4hw6_A          223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVD  301 (433)
T ss_dssp             EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            122 234467789999 7776666667889999999877652 2222  222345799999999666555 568899988


Q ss_pred             CCC
Q 008356          151 IRG  153 (568)
Q Consensus       151 lrt  153 (568)
                      .+.
T Consensus       302 ~d~  304 (433)
T 4hw6_A          302 YNR  304 (433)
T ss_dssp             BCT
T ss_pred             CCC
Confidence            763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.29  E-value=0.0035  Score=70.05  Aligned_cols=179  Identities=10%  Similarity=0.046  Sum_probs=100.9

Q ss_pred             cCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe-CC-----CeEEEEECCCCCceeE
Q 008356            3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DD-----GTLHLWDTTGRSPKVS   75 (568)
Q Consensus         3 SpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-~D-----GtV~VWDl~t~~~~v~   75 (568)
                      ..+|++++.|+. ++.+.+||..+++-...-.-+....-.+++..++++ +++.|+ .+     ..+.+||..+..-  .
T Consensus       251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W--~  327 (656)
T 1k3i_A          251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW--T  327 (656)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE--E
T ss_pred             CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcc--e
Confidence            467888899884 568999998766533221111112223345666777 778877 44     5699999866431  1


Q ss_pred             Eec---------c-------CC-------------------------------------------------CCeEEEEEc
Q 008356           76 WLK---------Q-------HS-------------------------------------------------APTAGISFS   90 (568)
Q Consensus        76 ~l~---------~-------H~-------------------------------------------------~~Vtslafs   90 (568)
                      .+.         .       +.                                                 ..-.++.|.
T Consensus       328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~  407 (656)
T 1k3i_A          328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD  407 (656)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred             eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEecc
Confidence            110         0       00                                                 011223333


Q ss_pred             C-CCCEEEEEeCCC-----------eEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcC-----------
Q 008356           91 S-DDKIIASVGLDK-----------KLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSN-----------  143 (568)
Q Consensus        91 P-dg~~LaSgs~DG-----------tV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~D-----------  143 (568)
                      . ++++++.|+.++           .|.+||..+.+-....    .......+++..++++++++|+.+           
T Consensus       408 ~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~  487 (656)
T 1k3i_A          408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV  487 (656)
T ss_dssp             TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred             CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcc
Confidence            3 667777777532           6788888776544332    122223455677899999999864           


Q ss_pred             CeEEEEECCCCCCceEEEeecCCCC-CeeEEEEccCCCeEEEec
Q 008356          144 GRVVFYDIRGKPQPLTVLRACSSSE-AVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       144 G~V~VWDlrt~~~~v~~l~~~~h~~-~VtsLafspdg~~Las~s  186 (568)
                      ..+.+||+.+..  ...+....+.. ......+.++++.++.++
T Consensus       488 ~~v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          488 FTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             cceEEEcCCCCc--eeecCCCCCccccccHhhcCCCcEEEecCC
Confidence            468999997652  22222111111 122344567777776664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.20  E-value=0.12  Score=57.72  Aligned_cols=171  Identities=11%  Similarity=0.002  Sum_probs=112.5

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG   86 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vts   86 (568)
                      .+|+.+ ....|+..+++..+....+....-.....|+|++.+..++++-..++.|+.+++++... ...+.........
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~G   84 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEG   84 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcce
Confidence            345544 56789999998665443333222235677999998776777777789999999987652 2333333345788


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEEEe
Q 008356           87 ISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus        87 lafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~~~v~~l~  162 (568)
                      +++...+. ++++-...+.|.+.++........+ ..-.....|+++|...+|+....  .+.|...+++....  ..+.
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~  162 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLV  162 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEE
Confidence            99987544 4455556789999999765443333 34456789999996556665552  57888899887642  2222


Q ss_pred             ecCCCCCeeEEEEccCCCeEE
Q 008356          163 ACSSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       163 ~~~h~~~VtsLafspdg~~La  183 (568)
                        ........|+++++++.|.
T Consensus       163 --~~~~~P~GlalD~~~~~LY  181 (628)
T 4a0p_A          163 --PNVGRANGLTIDYAKRRLY  181 (628)
T ss_dssp             --CSCSSEEEEEEETTTTEEE
T ss_pred             --CCCCCcceEEEccccCEEE
Confidence              2345678899988655443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.18  E-value=0.014  Score=65.02  Aligned_cols=201  Identities=12%  Similarity=0.011  Sum_probs=115.8

Q ss_pred             CCEEEEEEC-CCcEEEEEC-CCCceeEEeeCCCCC----------cEEEEEEccCCC---eEEEEEeCCCeEEEEECCCC
Q 008356            6 DEHLASISL-SGDLILHNL-ASGAKAAELKDPNEQ----------VLRVLDYSRNSR---HLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         6 G~~LasGs~-DG~V~VWDl-~tg~~v~~l~~~h~~----------~Vs~Lafspdg~---~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +..|++++. ++.|+.+|. .+|+.+-.+......          ..+.+.+.|.+.   ..++.++.|+.|+.+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556777777 899999999 899998777642211          112345533333   13778889999999999888


Q ss_pred             CceeEEeccC-C--CCeEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCceeeEeecCCCe---------------
Q 008356           71 SPKVSWLKQH-S--APTAG-ISFSSDDKIIASVG------LDKKLYTYDPGSRRPSSCITYEAPF---------------  125 (568)
Q Consensus        71 ~~~v~~l~~H-~--~~Vts-lafsPdg~~LaSgs------~DGtV~IWDlrt~~~v~~~~h~~~I---------------  125 (568)
                      +...+.-... .  ..+.+ ..+. ++ .++.++      .++.|+.+|.++++.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            7433221111 0  01111 1111 34 455544      3899999999999988776433221               


Q ss_pred             ------------------------EEEEEecCCCEEEEEEcCC----------------eEEEEECCCCCCceEEEeecC
Q 008356          126 ------------------------SSLAFIDDDWILTAGTSNG----------------RVVFYDIRGKPQPLTVLRACS  165 (568)
Q Consensus       126 ------------------------tsLafsPdg~~LasGs~DG----------------~V~VWDlrt~~~~v~~l~~~~  165 (568)
                                              ..+++.++...++.+..++                .|..+|.++++.. -.++...
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-W~~q~~~  298 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-FGYQKTP  298 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-EEEESST
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-eEeecCC
Confidence                                    1456777788888887653                7999999988533 2233222


Q ss_pred             CCCCeeEEEEccCCCeEEEeccCCCC---eEEEEecCCCcEEcCCCCCCCc
Q 008356          166 SSEAVSSLCWQRAKPVFIDETTCKAE---TALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       166 h~~~VtsLafspdg~~Las~s~ssd~---~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      |...-..+   .....++.. ...++   .+++.++.++.+.++|.+....
T Consensus       299 ~d~wd~d~---~~~p~l~d~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          299 HDEWDYAG---VNVMMLSEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             TCSSCCCC---CCCCEEEEE-ECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             CccccccC---CCccEEEec-cccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence            32210000   001111111 00112   4556566788888888766554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.18  E-value=0.01  Score=63.17  Aligned_cols=152  Identities=13%  Similarity=0.048  Sum_probs=94.9

Q ss_pred             EEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC-C----eEEEEECCCC
Q 008356           40 LRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-K----KLYTYDPGSR  113 (568)
Q Consensus        40 Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D-G----tV~IWDlrt~  113 (568)
                      ...|+|+| ++. .|+.+...+.|+.+|+.+..  +..+.........|+|++++++|+.+... +    .+.+++. .+
T Consensus       139 P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCEEEEETTEEE-EEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCEEEECCCCCC-eEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            35688997 344 35555555889999988765  34444456678999999999966666542 2    3444443 33


Q ss_pred             cee--eEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356          114 RPS--SCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA  190 (568)
Q Consensus       114 ~~v--~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd  190 (568)
                      ...  ..+........++++| ++.++++-..++.|..||...... ..... .........++|+|+|++|..      
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~-~~~~~~P~gia~~pdG~~lyv------  286 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFT-IQDSGWEFHIQFHPSGNYAYI------  286 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSSCCEEEEECTTSSEEEE------
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEE-cCCCCcceeEEEcCCCCEEEE------
Confidence            222  2333344567889999 677666666789999999986531 12222 222345788999998764433      


Q ss_pred             CeEEEEecCCCcEEcCCC
Q 008356          191 ETALLGGAVGDSILMPDP  208 (568)
Q Consensus       191 ~~~Lls~s~Dg~V~VWDl  208 (568)
                           +......|..+|.
T Consensus       287 -----~d~~~~~I~~~~~  299 (430)
T 3tc9_A          287 -----VVVNQHYILRSDY  299 (430)
T ss_dssp             -----EETTTTEEEEEEE
T ss_pred             -----EECCCCEEEEEeC
Confidence                 3334556666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.18  E-value=0.1  Score=59.97  Aligned_cols=151  Identities=11%  Similarity=-0.030  Sum_probs=95.5

Q ss_pred             cCCCCEEEEEE-CCCcEEEEECCCC----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            3 NCKDEHLASIS-LSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         3 SpdG~~LasGs-~DG~V~VWDl~tg----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      .+.++.|+... ..+.|+.+++...    .....+.. .......|++...+++++++-...+.|.+.++++... ...+
T Consensus       432 d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~  509 (791)
T 3m0c_C          432 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF  509 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE
T ss_pred             cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEE
Confidence            34344444433 3455666666432    11222221 2233456888888876777777889999999987652 2333


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVG-L-DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs-~-DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt  153 (568)
                      .........|++.|...+|+... . .+.|.+.++........+. .-.....|++++.+..|+.+. ..+.|..++++.
T Consensus       510 ~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          510 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            34455689999999655555554 3 3789999987655444443 335789999998776666664 467899999987


Q ss_pred             CC
Q 008356          154 KP  155 (568)
Q Consensus       154 ~~  155 (568)
                      ..
T Consensus       590 ~~  591 (791)
T 3m0c_C          590 GN  591 (791)
T ss_dssp             CS
T ss_pred             Cc
Confidence            53

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.15  E-value=0.016  Score=59.82  Aligned_cols=156  Identities=12%  Similarity=0.106  Sum_probs=103.7

Q ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc----CC--CCeEEEEE---cCCCCEEEEEe-----------
Q 008356           41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ----HS--APTAGISF---SSDDKIIASVG-----------  100 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~----H~--~~Vtslaf---sPdg~~LaSgs-----------  100 (568)
                      .+++|.+....++++.-.+++|..||...+......+..    ..  ..+..|.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            457898866644555558999999999755421222221    11  13689999   68877777544           


Q ss_pred             --CCCeEEEEECC---CCceeeEeec--------------CCCeEEEEEecCCCEEEEEEcC-CeEEEEECCCCCCceEE
Q 008356          101 --LDKKLYTYDPG---SRRPSSCITY--------------EAPFSSLAFIDDDWILTAGTSN-GRVVFYDIRGKPQPLTV  160 (568)
Q Consensus       101 --~DGtV~IWDlr---t~~~v~~~~h--------------~~~ItsLafsPdg~~LasGs~D-G~V~VWDlrt~~~~v~~  160 (568)
                        .+..|..||+.   +++.+.....              ...+..++..++|+..++++.. +.|..++.+... ....
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eeee
Confidence              26789999999   7877665531              1248899999999999999998 998888887652 2222


Q ss_pred             Eeec---CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          161 LRAC---SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       161 l~~~---~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ....   ......+.|+++|+|..|+..           .+ ++.|..+|++
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~-----------~~-~g~L~~fD~~  214 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAF-----------GG-PRALTAFDVS  214 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEE-----------SS-SSSEEEEECS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEE-----------cC-CCeEEEEcCC
Confidence            2111   112236789999986554443           33 7888888876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.08  E-value=0.091  Score=59.66  Aligned_cols=167  Identities=12%  Similarity=0.086  Sum_probs=109.0

Q ss_pred             EEEEECCCcEEEEECCCCceeEEeeC------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc---
Q 008356            9 LASISLSGDLILHNLASGAKAAELKD------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ---   79 (568)
Q Consensus         9 LasGs~DG~V~VWDl~tg~~v~~l~~------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~---   79 (568)
                      |..|..+ -|.+||..+++.......      -....|.++...++|.  |..|..++-|.+|+......  ..+..   
T Consensus       276 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~--~~~~~~~~  350 (795)
T 4a2l_A          276 LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRF--KNIRNIPY  350 (795)
T ss_dssp             EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSS--EEECCCTT
T ss_pred             EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccc--eEEcCCCC
Confidence            4445555 488899876654332211      1235689999888886  77788888899998765442  11211   


Q ss_pred             ----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           80 ----HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        80 ----H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                          ....|.++...+++++ ..|..++-|..||..+++......         ....|.+++..++++.|.+|+.++-|
T Consensus       351 ~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl  429 (795)
T 4a2l_A          351 KNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGL  429 (795)
T ss_dssp             SSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEE
T ss_pred             CCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCce
Confidence                2356999998887774 456777679999988765443321         13568899998888867788887889


Q ss_pred             EEEECCCCCCceEEEeec---CCCCCeeEEEEccCCCeEE
Q 008356          147 VFYDIRGKPQPLTVLRAC---SSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~---~h~~~VtsLafspdg~~La  183 (568)
                      .+||.++..  ...+...   .....|.++...++|.+.+
T Consensus       430 ~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          430 SILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             EEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             eEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence            999988753  2223210   1235688888777655433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.08  E-value=0.29  Score=54.60  Aligned_cols=170  Identities=6%  Similarity=-0.014  Sum_probs=110.4

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |++.++.|+... .++.|+.+++........+.. .......|++...+++++++-...+.|.+.++++... ...+...
T Consensus        44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~  121 (628)
T 4a0p_A           44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKD  121 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSS
T ss_pred             EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCC
Confidence            556566665554 457788887754433333332 2234567888877776777777788999999987653 2223344


Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCc
Q 008356           81 SAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQP  157 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~~  157 (568)
                      ......|++.|...+|+...  ..+.|...++........+..-.....|+++++++.|+.+. ..+.|..+|++.... 
T Consensus       122 l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-  200 (628)
T 4a0p_A          122 LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-  200 (628)
T ss_dssp             CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence            56689999999555555444  35688888887665544445556789999999877766665 567899999987543 


Q ss_pred             eEEEeecCCCCCeeEEEEcc
Q 008356          158 LTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       158 v~~l~~~~h~~~VtsLafsp  177 (568)
                       +++.  ........+++..
T Consensus       201 -~v~~--~~l~~P~glav~~  217 (628)
T 4a0p_A          201 -EVIA--DDLPHPFGLTQYQ  217 (628)
T ss_dssp             -EEEE--ECCSCEEEEEEET
T ss_pred             -EEee--ccCCCceEEEEEC
Confidence             3333  1223455677654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.04  E-value=0.06  Score=61.17  Aligned_cols=166  Identities=10%  Similarity=0.083  Sum_probs=107.2

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeC-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--   78 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~-------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~--   78 (568)
                      .|-+|..++-|..||..+++.......       -....|.++...+++. +|..|..++-|.+||..++.  ...+.  
T Consensus       369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~--~~~~~~~  445 (795)
T 4a2l_A          369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQ--VENFNQR  445 (795)
T ss_dssp             CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCC--EEEECTT
T ss_pred             CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCc--EEEeecC
Confidence            355677777799999876654332211       1235688888887775 57888887889999988765  23332  


Q ss_pred             ---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-------cCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           79 ---QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-------YEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        79 ---~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-------h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                         .....|.++...+++++.+.. .+| |.+||..+++......       ....|.++...++|++.+ |+. +-|.+
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~  521 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSV  521 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEE
T ss_pred             CCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEE
Confidence               234579999988888765544 444 8999988765433221       135689999988887655 444 55888


Q ss_pred             EECCCCCCceEEEee-----cCCCCCeeEEEEccCCCeEE
Q 008356          149 YDIRGKPQPLTVLRA-----CSSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       149 WDlrt~~~~v~~l~~-----~~h~~~VtsLafspdg~~La  183 (568)
                      ||..+...   .+..     ......|.++..+++|.+.+
T Consensus       522 ~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWi  558 (795)
T 4a2l_A          522 FKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWV  558 (795)
T ss_dssp             EEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred             EeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence            99876521   1210     01234688888777665433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.03  E-value=0.11  Score=57.89  Aligned_cols=183  Identities=7%  Similarity=-0.014  Sum_probs=109.6

Q ss_pred             EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC
Q 008356           12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS   91 (568)
Q Consensus        12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP   91 (568)
                      -.....|++.++........+....-.....|+|++.+..++++=...+.|+.+++++.......+.........+++.+
T Consensus        14 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             EECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             EeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            34567899999875431112221133445679999977756666556788999998765322233444445789999999


Q ss_pred             CCC-EEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEEEeecCCC
Q 008356           92 DDK-IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTVLRACSSS  167 (568)
Q Consensus        92 dg~-~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~~~v~~l~~~~h~  167 (568)
                      .++ ++++-...+.|.+.|+........+ ..-.....|+++|.+.+|+....  .+.|...+++.... .....  ..-
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~--~~~  170 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN--SEI  170 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC--SSC
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEe--CCC
Confidence            555 4455557789999999865543333 34456789999997666665553  46788888876532 22222  234


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       168 ~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .....|+++++++.|           +++-...+.|...|+
T Consensus       171 ~~P~Glald~~~~~L-----------Y~aD~~~~~I~~~~~  200 (619)
T 3s94_A          171 YWPNGLTLDYEEQKL-----------YWADAKLNFIHKSNL  200 (619)
T ss_dssp             SSEEEEEEETTTTEE-----------EEEETTTCCEEEESS
T ss_pred             CCCcEEEEEccCCEE-----------EEEeCCCCeEEEecC
Confidence            567889999864443           333334455555554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.03  E-value=0.0093  Score=66.15  Aligned_cols=77  Identities=12%  Similarity=0.067  Sum_probs=51.3

Q ss_pred             CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEE--EEEecCCCE
Q 008356           59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS--LAFIDDDWI  136 (568)
Q Consensus        59 DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~Its--LafsPdg~~  136 (568)
                      +|.|+.||+.+++...+.  .+..++..-.....+.+++.++.|+.|+.||.++++.+..+.....+.+  +.|..+|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~--~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEH--KEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEE--EESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEe--cCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            688999999888743222  2222222212222467888899999999999999999988865554433  566667753


Q ss_pred             E
Q 008356          137 L  137 (568)
Q Consensus       137 L  137 (568)
                      .
T Consensus       543 Y  543 (582)
T 1flg_A          543 Y  543 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.96  E-value=0.037  Score=60.31  Aligned_cols=151  Identities=9%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             ccC-CCCEEEEEEC-CCcEEEEECCCCceeEEeeCCC--CCcEEEEEE-------ccCCCeEEEEEeCCC------eEEE
Q 008356            2 YNC-KDEHLASISL-SGDLILHNLASGAKAAELKDPN--EQVLRVLDY-------SRNSRHLLVTAGDDG------TLHL   64 (568)
Q Consensus         2 fSp-dG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Laf-------spdg~~lLaTgs~DG------tV~V   64 (568)
                      |.| ++..|+++.. .+.|++.|++++.....+....  ......|+|       ++++++++++-..++      .|.+
T Consensus       146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~  225 (496)
T 3kya_A          146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI  225 (496)
T ss_dssp             EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE
T ss_pred             EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE
Confidence            556 3455555544 4678889987766554443321  234788999       999984444443332      2666


Q ss_pred             EECCC-CCce----eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC-------CCce-----------e-eEe
Q 008356           65 WDTTG-RSPK----VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-------SRRP-----------S-SCI  119 (568)
Q Consensus        65 WDl~t-~~~~----v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlr-------t~~~-----------v-~~~  119 (568)
                      ++... +...    ...+... .....++++| ++.++++-..++.|..+|+.       ++..           . ..+
T Consensus       226 i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~  304 (496)
T 3kya_A          226 IKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF  304 (496)
T ss_dssp             EECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE
T ss_pred             EecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeE
Confidence            66433 1211    0122222 2356788999 56666667788899999987       5543           1 112


Q ss_pred             --ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCC
Q 008356          120 --TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRG  153 (568)
Q Consensus       120 --~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt  153 (568)
                        ........|+|+|+|++|+++. ....|+.++...
T Consensus       305 ~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          305 TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence              3345578999999999655554 567899977654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.033  Score=60.64  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=87.6

Q ss_pred             EEEEEEcc-CCCeEEEEEeCCCeEEEEECCCCCceeEEeccC----CCCeEEEEE-------cCCCCEEEEEeCCC----
Q 008356           40 LRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH----SAPTAGISF-------SSDDKIIASVGLDK----  103 (568)
Q Consensus        40 Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H----~~~Vtslaf-------sPdg~~LaSgs~DG----  103 (568)
                      ...|+|+| ++.+++++-...+.|++.|+.++.  +..+..-    ......++|       ++++++|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            45789998 355566665556778889988766  3333221    235899999       99998666665543    


Q ss_pred             ---eEEEEECCC-Ccee-----eEeecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECC-------CCCC-----c----
Q 008356          104 ---KLYTYDPGS-RRPS-----SCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIR-------GKPQ-----P----  157 (568)
Q Consensus       104 ---tV~IWDlrt-~~~v-----~~~~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlr-------t~~~-----~----  157 (568)
                         .|.+++... +...     ..+........++++|+ +.++++-..++.|..+|+.       ++..     +    
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               367776443 2221     23322334567889995 5555566678889999997       4432     0    


Q ss_pred             -eEEEeecCCCCCeeEEEEccCCCeE
Q 008356          158 -LTVLRACSSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       158 -v~~l~~~~h~~~VtsLafspdg~~L  182 (568)
                       ...+-..+.....+.|+|+|+|++|
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~l  324 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYA  324 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEE
Confidence             1222222334557889999987643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.79  E-value=0.18  Score=52.55  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=98.7

Q ss_pred             CCCcEEEEECCC--Cce-eEEeeCC----CCCcEEEEEEcc--CCCeEEEEE-eC--CCeEEEEECCCCCce---eEEec
Q 008356           14 LSGDLILHNLAS--GAK-AAELKDP----NEQVLRVLDYSR--NSRHLLVTA-GD--DGTLHLWDTTGRSPK---VSWLK   78 (568)
Q Consensus        14 ~DG~V~VWDl~t--g~~-v~~l~~~----h~~~Vs~Lafsp--dg~~lLaTg-s~--DGtV~VWDl~t~~~~---v~~l~   78 (568)
                      .+|.|.++|+.+  ++. ...+.+.    ..-....|.+.+  ++...|+.+ ..  +.+|.+|+++.....   +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            689999999873  232 1123321    122456677765  354334444 33  567888888543322   22222


Q ss_pred             cC-CCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE
Q 008356           79 QH-SAPTAGISFSSDDKIIASVG-----------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        79 ~H-~~~VtslafsPdg~~LaSgs-----------------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG  140 (568)
                      +. -...+++.+.++|.+.++..                 ..|.|+.+|..  +.......-...+.++|+||++.|+++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence            21 34589999999998777654                 12566666653  333333444567899999999888876


Q ss_pred             E-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 008356          141 T-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDE  185 (568)
Q Consensus       141 s-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~  185 (568)
                      . ..+.|..|+++..... ...+.+...+..-.+++++ +|.+.+++
T Consensus       239 dt~~~~I~~~~~~~~g~l-~~~~~~~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWTL-TPLRVLSFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EGGGTEEEEEEECTTSCE-EEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eCCCCeEEEEEECCCCcE-ecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence            6 5788999999743222 1111112235567777777 46554433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.77  E-value=0.042  Score=58.44  Aligned_cols=150  Identities=8%  Similarity=-0.061  Sum_probs=92.2

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--CCce-eEE
Q 008356            2 YNC-KDEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPK-VSW   76 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--~~~~-v~~   76 (568)
                      +++ +|++.++-..++.|+.+|..++..... +.......-..|+|+++++.++++-..++.|+.++.+.  .... ...
T Consensus       235 vd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~  314 (433)
T 4hw6_A          235 VHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYI  314 (433)
T ss_dssp             ECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEE
T ss_pred             EeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEE
Confidence            456 455444444567899999877765222 22222233346999999985566666778999988753  2100 111


Q ss_pred             eccC---------------CCCeEEEEE---------cCCCCEEEEEeCCCeEEEEECCCCceeeEeec-----------
Q 008356           77 LKQH---------------SAPTAGISF---------SSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-----------  121 (568)
Q Consensus        77 l~~H---------------~~~Vtslaf---------sPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h-----------  121 (568)
                      +.+.               -.....+++         ..+++++++-...+.|+.+|. ++........           
T Consensus       315 ~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          315 VCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             EEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCE
T ss_pred             EEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCC
Confidence            1111               123677899         667777777677889999985 4544333321           


Q ss_pred             -------CCCeEEEEEe-cCCCEEEEEEcCCeEEEEECC
Q 008356          122 -------EAPFSSLAFI-DDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus       122 -------~~~ItsLafs-Pdg~~LasGs~DG~V~VWDlr  152 (568)
                             -.....|+++ +++.++++-..+++|+.++++
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                   1236789999 566666666667788888764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.69  E-value=0.29  Score=54.54  Aligned_cols=152  Identities=8%  Similarity=-0.033  Sum_probs=96.7

Q ss_pred             ccCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |++.++.|+.... .+.|+.+++........+....-.....|++...+++++++-..++.|.+.++++.... ......
T Consensus        47 ~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~  125 (619)
T 3s94_A           47 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLFWQE  125 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSS
T ss_pred             EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE-EEEeCC
Confidence            4565666665554 46677777654322222222122456789999877767777778899999999876532 223344


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGK  154 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~--DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~  154 (568)
                      ......|++.|.+.+|+....  .+.|...++......... ..-.....|++++++..|+.+. ..+.|..+|++..
T Consensus       126 l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          126 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            556789999996555554442  467888887654443333 2445688999999766666654 5678999998864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.66  E-value=0.0066  Score=68.85  Aligned_cols=151  Identities=10%  Similarity=-0.026  Sum_probs=89.2

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCC----CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLAS----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~t----g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      |.+.++.|+... ..+.|+.+++..    ......+.. .......|++.+.+.+++++-...+.|.++++.+... ...
T Consensus       413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l  490 (699)
T 1n7d_A          413 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTL  490 (699)
T ss_dssp             EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEE
T ss_pred             cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEE
Confidence            455556666554 346788888754    122212211 1122345777765555666666778999999887652 222


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEE-EEcCCeEEEEECC
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVG-LD-KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTA-GTSNGRVVFYDIR  152 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs-~D-GtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~Las-Gs~DG~V~VWDlr  152 (568)
                      +.........|++.|.+.+|+... .. +.|.++++........+ ..-.....|+|++++..|+. -...+.|.++|+.
T Consensus       491 ~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          491 FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            333334568899999555444443 22 67888887643332222 22345678999987555554 4467789999997


Q ss_pred             CC
Q 008356          153 GK  154 (568)
Q Consensus       153 t~  154 (568)
                      ..
T Consensus       571 G~  572 (699)
T 1n7d_A          571 GG  572 (699)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.65  E-value=0.11  Score=58.82  Aligned_cols=180  Identities=12%  Similarity=0.050  Sum_probs=108.8

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEee---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCC
Q 008356            8 HLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHS   81 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~---~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~---~H~   81 (568)
                      .|.+|..++-|.+||..+++.. .+.   ......|.++...+++.  |..|..++-|..||..++.  ...+.   ...
T Consensus       375 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~  449 (781)
T 3v9f_A          375 KLWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQIIELEKNEL  449 (781)
T ss_dssp             CEEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--EEECCSTTTCC
T ss_pred             CEEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEEeccCCCCC
Confidence            3556666666888887544322 111   11345788888887775  6667877778889887654  33332   234


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ..|.++...+++++.+ +.. +-|.+||..+++.......      ...|.++...++|++. +|+.++-|..||.++..
T Consensus       450 ~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCe
Confidence            6799998887776544 455 5599999887665433321      3578999998888755 45554447888887652


Q ss_pred             CceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          156 QPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       156 ~~v~~l~~~--~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                        ...+...  -....|.++...++|.+            .++.. +|.|..||...
T Consensus       527 --~~~~~~~~~l~~~~i~~i~~d~~g~l------------Wi~T~-~Glv~~~d~~~  568 (781)
T 3v9f_A          527 --VRKFNQYEGFCSNTINQIYRSSKGQM------------WLATG-EGLVCFPSARN  568 (781)
T ss_dssp             --EEEECTTTTCSCSCEEEEEECTTSCE------------EEEET-TEEEEESCTTT
T ss_pred             --EEEccCCCCCCCCeeEEEEECCCCCE------------EEEEC-CCceEEECCCC
Confidence              2222210  11345777777665443            23322 45447777653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.60  E-value=0.41  Score=48.32  Aligned_cols=147  Identities=14%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE-EECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008356           26 GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL-WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK  104 (568)
Q Consensus        26 g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~V-WDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGt  104 (568)
                      |+.-..+.......+..+.+.+++. +++.+ .+|.++. +|-....- ...-......+..+.+.+++..+ .++.+|.
T Consensus       151 G~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW-~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~  226 (327)
T 2xbg_A          151 GKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAW-EPHNRTTSRRLHNMGFTPDGRLW-MIVNGGK  226 (327)
T ss_dssp             TSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSC-EEEECCSSSCEEEEEECTTSCEE-EEETTTE
T ss_pred             CCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCce-eECCCCCCCccceeEECCCCCEE-EEeCCce
Confidence            4433334333455678899999876 55554 4555444 33212221 11123445678999999887655 5566788


Q ss_pred             EEEEECCCCceeeEee-----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccC
Q 008356          105 LYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRA  178 (568)
Q Consensus       105 V~IWDlrt~~~v~~~~-----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~-~h~~~VtsLafspd  178 (568)
                      +++.+...++.-..+.     ....+.++++.+++.+++++. +|.| ++..+.+. ....+... .....+.++.|.++
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ-TWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS-SCEECGGGTTSSSCCCEEEEEET
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc-ccEEcCccCCCCCCeEEEEEECC
Confidence            8777533233222121     223588999998877766654 6766 44555442 33333311 23356778888654


Q ss_pred             C
Q 008356          179 K  179 (568)
Q Consensus       179 g  179 (568)
                      +
T Consensus       304 ~  304 (327)
T 2xbg_A          304 D  304 (327)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.56  E-value=0.071  Score=63.87  Aligned_cols=179  Identities=8%  Similarity=0.055  Sum_probs=112.6

Q ss_pred             CcEEEEECCCCceeEEeeCCCCCcEEEEEEc---cCCCeEEEEEe----------CCCeEEEEECCCCCceeEEeccCCC
Q 008356           16 GDLILHNLASGAKAAELKDPNEQVLRVLDYS---RNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafs---pdg~~lLaTgs----------~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      +.|++.|..+.+.+..+.-...+.+.+++..   .+.+.+|+.|.          ..|.|++|++...+..........+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            4689999888888877766566666666643   33334787775          3478999999755433333344578


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      .|++++-- +|++++..  ..+|++||+...+.+.. ..+...|..+...-.++++++|..-..|.++..+.....+..+
T Consensus       887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            89888754 45444433  47899999987654442 1222223333343457899999987778776655444444555


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      ....+..+++++.+-.++             .++.+..++.+.+....+
T Consensus       964 a~D~~~~~vta~~~ld~~-------------t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDDD-------------NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EECCSCBCEEEEEEEETT-------------EEEEEETTSEEEEEEECT
T ss_pred             EeecccccEEEEEEEccC-------------cEEEEcCCCcEEEEecCC
Confidence            444566788888876432             344455677777776544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.51  E-value=0.0039  Score=70.69  Aligned_cols=180  Identities=7%  Similarity=-0.059  Sum_probs=106.1

Q ss_pred             CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---CceeEEeccCCCCeEEEEEc
Q 008356           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---SPKVSWLKQHSAPTAGISFS   90 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~---~~~v~~l~~H~~~Vtslafs   90 (568)
                      ..+.|++.++...+....+..  ...+..|+|.+.+..++++-...+.|+.+++.+.   ......+.........|++.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             CccceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            345678888766554433332  2334568999877655565556789999998751   11122222222345678888


Q ss_pred             C-CCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc--CCeEEEEECCCCCCceEEEeecCC
Q 008356           91 S-DDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS--NGRVVFYDIRGKPQPLTVLRACSS  166 (568)
Q Consensus        91 P-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~~~v~~l~~~~h  166 (568)
                      + .++++++-...+.|.++|+........+. .......|+++|.+.+|+....  .+.|.++++.....  ..+.. ..
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~-~~  538 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-EN  538 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC-SS
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe-CC
Confidence            6 44555555567889999987655444443 2345678899996655555432  37888888876432  22211 12


Q ss_pred             CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ......|+|++++..           ++++-...+.|.++|+.
T Consensus       539 l~~PnGlavd~~~~~-----------LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          539 IQWPNGITLDLLSGR-----------LYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CSSCCCEEECTTTCC-----------EEEEETTTTEEEEECSS
T ss_pred             CCCccEEEEeccCCE-----------EEEEecCCCeEEEEccC
Confidence            345678899886433           34444556677777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.49  E-value=0.19  Score=56.87  Aligned_cols=169  Identities=10%  Similarity=0.063  Sum_probs=103.2

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-----
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-----   80 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~--~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H-----   80 (568)
                      .|.+|..++-|..+|..+++.. .+..  .....|.++...+++.  |..|.. +-|.+||..+..... .....     
T Consensus       419 ~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~  493 (781)
T 3v9f_A          419 NLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIH-HYDTSNSQLL  493 (781)
T ss_dssp             CEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCCE-EECTTTSSCS
T ss_pred             CEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEEe-cccCcccccc
Confidence            3455666667888887666533 3321  1345788888887765  555666 558889987655222 11111     


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      ...|.++...+++++.+.....| |..||..+++......    ....|.++...++|.+.+ ++.+|.|..||.++.. 
T Consensus       494 ~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~-  570 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFD-  570 (781)
T ss_dssp             CSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCC-
T ss_pred             cceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECCCCCc-
Confidence            36799999988887655443345 8889987765433221    234688999888887544 5556665889987653 


Q ss_pred             ceEEEeec-C-CCCCeeEEEEccCCCeEEEe
Q 008356          157 PLTVLRAC-S-SSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       157 ~v~~l~~~-~-h~~~VtsLafspdg~~Las~  185 (568)
                       ...+... + ....|.++...++|.+.+..
T Consensus       571 -~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          571 -YQVFQRKEGLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             -CEEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred             -EEEccccCCCCCceEEEEEECCCCCEEEEc
Confidence             2333211 1 12357788877766554443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.13  E-value=0.28  Score=52.41  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=91.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCceeEEeeCCC---CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----------
Q 008356            5 KDEHLASISLSGDLILHNLASGAKAAELKDPN---EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----------   71 (568)
Q Consensus         5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h---~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~----------   71 (568)
                      +|..|+++ .++.||.-++......+.++..+   ...+..+..+|+|+ +|+.. .+..|.|-.+..+.          
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCccccccc
Confidence            44444444 34677777776554555555432   22456699999998 56655 44688888886221          


Q ss_pred             -ceeEEecc------CCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCC--ceeeEe-------e---cCCCeEEEE
Q 008356           72 -PKVSWLKQ------HSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSR--RPSSCI-------T---YEAPFSSLA  129 (568)
Q Consensus        72 -~~v~~l~~------H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~--~~v~~~-------~---h~~~ItsLa  129 (568)
                       .....+.-      ...+|..+.|+|   .+..|++-..|++|++||+...  ++. .+       +   ....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence             11112221      246799999999   5678999999999999999862  222 22       1   225688899


Q ss_pred             EecCCCEEEEEE--cCCeEEEE
Q 008356          130 FIDDDWILTAGT--SNGRVVFY  149 (568)
Q Consensus       130 fsPdg~~LasGs--~DG~V~VW  149 (568)
                      |..++-.|.+.+  ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            988777677655  66777654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.98  E-value=0.25  Score=49.94  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             ccCCCCEEEEEECC--------------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE---eCCCeEEE
Q 008356            2 YNCKDEHLASISLS--------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA---GDDGTLHL   64 (568)
Q Consensus         2 fSpdG~~LasGs~D--------------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg---s~DGtV~V   64 (568)
                      ++++|++|+.....              ..|+..++..++.. .+..   ...  ..|+++++.++++-   ..+..|+.
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~---~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP---DPC--IYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC---SCE--EEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec---CCc--cEEEEeCCEEEEEeecCCCCceEEE
Confidence            46788888877543              36777777655433 3332   122  25677888555554   23445666


Q ss_pred             EECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC
Q 008356           65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        65 WDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D  143 (568)
                      .++++..  ...+..+..    ..|+++++.|+-.+. ...|.+.++..+....++.  +... ..+.|++.+|+-...+
T Consensus       134 ~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          134 IRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGG
T ss_pred             EECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcC
Confidence            6666554  333444432    345677888876665 6789999988776554443  2332 3466888888877654


Q ss_pred             --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356          144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (568)
Q Consensus       144 --G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg  201 (568)
                        ..|..-++++...  ..+.    ...+  ..|+|++.+|..+... ....|.....||
T Consensus       205 ~~~~I~~~~ldG~~~--~~Lt----~~~~--~~~~~~g~~Iy~~~~~-~~~~i~~~~~DG  255 (302)
T 3s25_A          205 RDNAIVHVNINNPNP--VVLT----EANI--EHYNVYGSLIFYQRGG-DNPALCVVKNDG  255 (302)
T ss_dssp             GTTEEEEECSSSCCC--EECS----CSCE--EEEEEETTEEEEEECS-SSCEEEEEETTS
T ss_pred             CCcEEEEEECCCCCe--EEEe----CCCc--ceEEECCCEEEEEECC-CCcEEEEEECCC
Confidence              3677777776542  3332    1223  3478888887655222 223444444454

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.98  E-value=0.42  Score=49.68  Aligned_cols=138  Identities=15%  Similarity=0.271  Sum_probs=91.1

Q ss_pred             CCcEEEEEC--CCCceeEEeeC---C--CC-CcEEEEEE--ccC-CCeEEEEEeCCCeEEEEECCC---CC---ceeEEe
Q 008356           15 SGDLILHNL--ASGAKAAELKD---P--NE-QVLRVLDY--SRN-SRHLLVTAGDDGTLHLWDTTG---RS---PKVSWL   77 (568)
Q Consensus        15 DG~V~VWDl--~tg~~v~~l~~---~--h~-~~Vs~Laf--spd-g~~lLaTgs~DGtV~VWDl~t---~~---~~v~~l   77 (568)
                      +++|.+|++  .++. +..+..   .  .. ..+..+|+  ++. ++.++++...+|.+..|++..   +.   ..++.+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            478999976  3443 444421   1  11 34555677  664 444678888899999999932   21   124444


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCceeeEee---cCCCeEEEEEe--cCCC-EEEEEE-cCCe
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-----SRRPSSCIT---YEAPFSSLAFI--DDDW-ILTAGT-SNGR  145 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr-----t~~~v~~~~---h~~~ItsLafs--Pdg~-~LasGs-~DG~  145 (568)
                      .. ...+..+...+....|+.+-++.-|..||.+     +++.+..+.   ....+..|++-  ++++ +|++.+ .+..
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            43 4578899999988899999999888888865     344555543   23468888885  4455 566555 6789


Q ss_pred             EEEEECCCC
Q 008356          146 VVFYDIRGK  154 (568)
Q Consensus       146 V~VWDlrt~  154 (568)
                      +.|||.+..
T Consensus       256 ~~Vydr~~~  264 (355)
T 3amr_A          256 YAIYDRQGK  264 (355)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEECCCC
Confidence            999999743

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.93  E-value=0.29  Score=50.91  Aligned_cols=161  Identities=14%  Similarity=0.175  Sum_probs=97.4

Q ss_pred             CCcEEEEECCCC-c---eeEEeeCCCCCcEEEEEEccCCCeEEEEEe-----------------CCCeEEEEECCCCCce
Q 008356           15 SGDLILHNLASG-A---KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------------DDGTLHLWDTTGRSPK   73 (568)
Q Consensus        15 DG~V~VWDl~tg-~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-----------------~DGtV~VWDl~t~~~~   73 (568)
                      +..|.||++..+ .   .+..+.+..-...+++.+.++|. ++++..                 ..|.|+.||.  ++  
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--  212 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--  212 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--
Confidence            456778776543 2   23445543445678999999987 555543                 1244555544  33  


Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Cce--eeEeecCCCeEEEEEec-CCCEEEEEEcC-CeEE
Q 008356           74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGS-RRP--SSCITYEAPFSSLAFID-DDWILTAGTSN-GRVV  147 (568)
Q Consensus        74 v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt-~~~--v~~~~h~~~ItsLafsP-dg~~LasGs~D-G~V~  147 (568)
                      ++.+...-...+.++|+||++.|+.+. ..+.|..||+.. ++.  ...+...+....+++.+ +|++.+++..+ +.|.
T Consensus       213 ~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~  292 (355)
T 3sre_A          213 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIF  292 (355)
T ss_dssp             CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHH
T ss_pred             EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEE
Confidence            333333445689999999998877665 578999999864 332  22344456778899999 59988877644 4566


Q ss_pred             EEECCCCCCceEEEeec---CCCCCeeEEEEccCCCeE
Q 008356          148 FYDIRGKPQPLTVLRAC---SSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~---~h~~~VtsLafspdg~~L  182 (568)
                      .||.+.. .+..+++..   +....|..+ |..+|+.+
T Consensus       293 ~~~P~~~-~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l  328 (355)
T 3sre_A          293 FYDAENP-PGSEVLRIQDILSEEPKVTVV-YAENGTVL  328 (355)
T ss_dssp             SCCTTSC-CCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred             EECCCCC-CCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence            6776632 233333321   123344444 56677764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.67  E-value=0.84  Score=46.71  Aligned_cols=139  Identities=13%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCcee--EEee--CCCCCcEEEEEEccC---CCeEEEEEeCC-----CeEEEEECC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKA--AELK--DPNEQVLRVLDYSRN---SRHLLVTAGDD-----GTLHLWDTT   68 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v--~~l~--~~h~~~Vs~Lafspd---g~~lLaTgs~D-----GtV~VWDl~   68 (568)
                      +|.|+|++ +++..+|.|++++  +++..  ..+.  .........|+|+|+   +..++++-..+     +.|..|+..
T Consensus        37 a~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~  113 (352)
T 2ism_A           37 AFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL  113 (352)
T ss_dssp             EECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             EEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence            36789984 4556779999998  44422  1121  112345788999998   55455554433     678888876


Q ss_pred             CCC-----ceeEEec---cCCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC------------ce
Q 008356           69 GRS-----PKVSWLK---QHSAPTAGISFSSDDKIIASVGL-------------DKKLYTYDPGSR------------RP  115 (568)
Q Consensus        69 t~~-----~~v~~l~---~H~~~VtslafsPdg~~LaSgs~-------------DGtV~IWDlrt~------------~~  115 (568)
                      ...     ..+..+.   ........++|.|++.++++.+.             .++|.-+|....            ..
T Consensus       114 ~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~  193 (352)
T 2ism_A          114 GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGAR  193 (352)
T ss_dssp             SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSC
T ss_pred             CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCC
Confidence            432     1111122   11223468999999987776542             256777766531            01


Q ss_pred             eeEeec-CCCeEEEEEec-CCCEEEEEEc
Q 008356          116 SSCITY-EAPFSSLAFID-DDWILTAGTS  142 (568)
Q Consensus       116 v~~~~h-~~~ItsLafsP-dg~~LasGs~  142 (568)
                      ...+.. -.....++|+| +++++++-..
T Consensus       194 ~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          194 PEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             ccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence            112211 12356789999 6666555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.56  E-value=0.45  Score=48.74  Aligned_cols=178  Identities=13%  Similarity=0.150  Sum_probs=93.1

Q ss_pred             ccCC---CCEEEEEECC------CcEEEEECCCCc-----ee-EEee--CCCCCcEEEEEEccCCCeEEEEEeC------
Q 008356            2 YNCK---DEHLASISLS------GDLILHNLASGA-----KA-AELK--DPNEQVLRVLDYSRNSRHLLVTAGD------   58 (568)
Q Consensus         2 fSpd---G~~LasGs~D------G~V~VWDl~tg~-----~v-~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~------   58 (568)
                      |+|+   +..|+++...      +.|..|+...++     .+ ..+.  .........|+|.|+|. ++++.++      
T Consensus        82 ~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~  160 (352)
T 2ism_A           82 LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYEREL  160 (352)
T ss_dssp             ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGG
T ss_pred             ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCcc
Confidence            5666   5555555432      578888876432     11 1132  11111224689999996 5555432      


Q ss_pred             -------CCeEEEEECCCCC------------ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCe--------EEEEEC
Q 008356           59 -------DGTLHLWDTTGRS------------PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKK--------LYTYDP  110 (568)
Q Consensus        59 -------DGtV~VWDl~t~~------------~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGt--------V~IWDl  110 (568)
                             .|.|.-+|.++.-            .......+|. ....++|+| +++++++-.....        |.+..-
T Consensus       161 ~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~  239 (352)
T 2ism_A          161 AQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP  239 (352)
T ss_dssp             GGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECT
T ss_pred             ccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc
Confidence                   2566666665410            0111223333 367789999 6665555433332        333321


Q ss_pred             CC----------------CceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc------eEEEeecCCCC
Q 008356          111 GS----------------RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP------LTVLRACSSSE  168 (568)
Q Consensus       111 rt----------------~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~------v~~l~~~~h~~  168 (568)
                      ..                ..++..+........++| .+|.++++.-..+.|...+++.....      ...+   ....
T Consensus       240 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~  315 (352)
T 2ism_A          240 GGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFG  315 (352)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSC
T ss_pred             CCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCC
Confidence            11                012222222334567777 46666666666778888887754321      1222   2235


Q ss_pred             CeeEEEEccCCCeEEEe
Q 008356          169 AVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       169 ~VtsLafspdg~~Las~  185 (568)
                      .+..+++.|+|...++.
T Consensus       316 rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          316 RLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CEEEEEECTTSCEEEEE
T ss_pred             CeeEEEECCCCcEEEEE
Confidence            78899999988665554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.45  E-value=0.41  Score=48.33  Aligned_cols=143  Identities=11%  Similarity=0.070  Sum_probs=81.5

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---   78 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~---   78 (568)
                      +.+++++++++ .+|.|+.-+-..++.-..+.......+..+.+.+++.  ++.++.+|.+++++.+.++ ....+.   
T Consensus       170 ~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~-tW~~~~~~~  245 (327)
T 2xbg_A          170 RSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSE-NWGELLSPL  245 (327)
T ss_dssp             ECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEE-EECCCBCTT
T ss_pred             EcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCC-eeEeccCCc
Confidence            45666666555 4555544321113332333333455678888988876  4456678888887533222 011111   


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee----cCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        79 -~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~----h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                       .+...+.++.+.+++..++.+ .++.| ++....++.-..+.    ....+.++.|.+++ .+++++.+|.|.-++-
T Consensus       246 ~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          246 RRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             SSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             ccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence             122458899999877766654 46766 34444444333332    24568889887554 4666677898877764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.40  E-value=0.6  Score=45.74  Aligned_cols=141  Identities=16%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCc---eeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCC
Q 008356            5 KDEHLASISLS-----GDLILHNLASGA---KAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTG   69 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~---~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t   69 (568)
                      ++++++.|+.+     ..+.+||+.+.+   -..  .+... .....++.+  ++ .+++.|+.+     ..+.+||..+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~-r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-RGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC-CBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC-ccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCC
Confidence            45566677754     468999987765   222  22211 111122222  44 477777654     3588999877


Q ss_pred             CCceeEEecc--CCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEee--cCC-CeEEEEEecCCCEEEE
Q 008356           70 RSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEA-PFSSLAFIDDDWILTA  139 (568)
Q Consensus        70 ~~~~v~~l~~--H~~~VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~~--h~~-~ItsLafsPdg~~Las  139 (568)
                      ..-  ..+..  ....-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  ... ...++.+  ++++++.
T Consensus       138 ~~W--~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~  212 (301)
T 2vpj_A          138 DQW--SMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVV  212 (301)
T ss_dssp             TEE--EEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CeE--EECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEE
Confidence            652  22211  11111122222 67777777754     358999998875433321  111 1222222  5677777


Q ss_pred             EEcC-----CeEEEEECCCC
Q 008356          140 GTSN-----GRVVFYDIRGK  154 (568)
Q Consensus       140 Gs~D-----G~V~VWDlrt~  154 (568)
                      |+.+     ..|.+||+++.
T Consensus       213 GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTTT
T ss_pred             eCCCCCcccceEEEEeCCCC
Confidence            7764     46899999875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.24  E-value=0.54  Score=46.18  Aligned_cols=143  Identities=11%  Similarity=0.134  Sum_probs=74.6

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCce
Q 008356            5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSPK   73 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~~~~   73 (568)
                      ++++++.|+.+     ..+.+||..+.+-...-.... ......+.+  ++ .+++.|+.++     .+.+||+.+..  
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~--  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNE--  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTE--
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCe--
Confidence            45566667654     358889987665322211111 111122222  34 4777777553     58888987665  


Q ss_pred             eEEeccCCCC--eEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEc
Q 008356           74 VSWLKQHSAP--TAGISFSSDDKIIASVGLD-------KKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        74 v~~l~~H~~~--VtslafsPdg~~LaSgs~D-------GtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~  142 (568)
                      ...+.....+  -.+++.. ++++++.|+.+       ..+.+||+.+.+-...-  .....-.+++.. ++++++.|+.
T Consensus       136 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~  213 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGH  213 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred             EeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCC
Confidence            2222221111  1122222 56666776642       35889999876543322  111111122222 5677778776


Q ss_pred             C-----CeEEEEECCCC
Q 008356          143 N-----GRVVFYDIRGK  154 (568)
Q Consensus       143 D-----G~V~VWDlrt~  154 (568)
                      +     ..|.+||+.+.
T Consensus       214 ~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             SSSSBCCCEEEEETTTT
T ss_pred             CCCcccceEEEEeCCCC
Confidence            4     36889999875

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.18  E-value=1.9  Score=46.06  Aligned_cols=128  Identities=13%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             ccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------
Q 008356           46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH----SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-------  114 (568)
Q Consensus        46 spdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H----~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-------  114 (568)
                      +.++.. ++.+ .++.||.-++.... ..+.+...    -..|..+..+|+|++|+..+ +..|.|..+..+.       
T Consensus        29 ~~n~t~-i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           29 SQNGTR-IVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             ETTTTE-EEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EcCCCE-EEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            445553 3332 34788888886433 23333332    23688899999999999886 4578998886321       


Q ss_pred             -----eeeEee-------cCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCC-CCCceEEEeec-------CCCCCee
Q 008356          115 -----PSSCIT-------YEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRG-KPQPLTVLRAC-------SSSEAVS  171 (568)
Q Consensus       115 -----~v~~~~-------h~~~ItsLafsPd---g~~LasGs~DG~V~VWDlrt-~~~~v~~l~~~-------~h~~~Vt  171 (568)
                           ..+.+.       ...+|..+.|+|-   +..|++-..|+.|++||+.. ...|. .+...       .....|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                 111221       2467999999994   67999999999999999986 33343 33211       1224567


Q ss_pred             EEEEccC
Q 008356          172 SLCWQRA  178 (568)
Q Consensus       172 sLafspd  178 (568)
                      +++|..+
T Consensus       184 S~~Fg~~  190 (452)
T 3pbp_A          184 DLEFSKD  190 (452)
T ss_dssp             EEEECTT
T ss_pred             EEEEcCC
Confidence            7777763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.18  E-value=0.53  Score=46.31  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             CCCEEEEEECC----CcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 008356            5 KDEHLASISLS----GDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK   73 (568)
Q Consensus         5 dG~~LasGs~D----G~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~D------GtV~VWDl~t~~~~   73 (568)
                      ++.+++.|+.+    ..+.+||+.+.+-...-.... ......+.+  ++. +++.|+.+      ..+.+||..+..  
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~--  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTES--  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence            45566677654    578899987765332211111 111122222  444 77777765      458999987765  


Q ss_pred             eEEeccCCC--CeEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEE
Q 008356           74 VSWLKQHSA--PTAGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        74 v~~l~~H~~--~VtslafsPdg~~LaSgs~---------DGtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasG  140 (568)
                      ...+.....  .-.+++. -++++++.|+.         -..+.+||+.+.+-...-.  ....-.+++.. ++++++.|
T Consensus       130 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G  207 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVG  207 (306)
T ss_dssp             EEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred             eEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEe
Confidence            222221111  1111222 25666676653         3458899998875433321  11111122222 56777777


Q ss_pred             EcC-----CeEEEEECCCC
Q 008356          141 TSN-----GRVVFYDIRGK  154 (568)
Q Consensus       141 s~D-----G~V~VWDlrt~  154 (568)
                      +.+     ..|.+||+.+.
T Consensus       208 G~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             CEETTEEBCCEEEEETTTT
T ss_pred             CCCCCCCCceEEEeeCCCC
Confidence            654     35889999875

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.99  E-value=5.9  Score=47.36  Aligned_cols=148  Identities=12%  Similarity=0.061  Sum_probs=91.5

Q ss_pred             ccCCCCEEEEEECC---------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356            2 YNCKDEHLASISLS---------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         2 fSpdG~~LasGs~D---------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      |..+...|+++...         ..|++.+......+.++....+..|...+.+  +. +++.+. ++.+.+++++.+..
T Consensus       469 f~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~-~vvva~-g~~l~~fel~~~~L  544 (1158)
T 3ei3_A          469 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SS-QVVVAV-GRALYYLQIHPQEL  544 (1158)
T ss_dssp             CCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SS-EEEEEE-TTEEEEEEEETTEE
T ss_pred             ccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CC-EEEEEE-CCEEEEEEeeCCce
Confidence            34455556655432         2355666554556666664444445544544  33 344444 67888888865432


Q ss_pred             eeEEeccCCCCeEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCceeeEeec--CCCeEEEEEec--CCCEEEEEE
Q 008356           73 KVSWLKQHSAPTAGISFSSD------DKIIASVGL-DKKLYTYDPGSRRPSSCITY--EAPFSSLAFID--DDWILTAGT  141 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsPd------g~~LaSgs~-DGtV~IWDlrt~~~v~~~~h--~~~ItsLafsP--dg~~LasGs  141 (568)
                      ....-..-...|.|+++.+.      .++++.|.. |++|+|+++.+.+.+.....  .....++.+..  ...+|.+|-
T Consensus       545 ~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl  624 (1158)
T 3ei3_A          545 RQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCAL  624 (1158)
T ss_dssp             EEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             eeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEe
Confidence            12122234568999999862      478899986 99999999988766655433  33555555543  345788999


Q ss_pred             cCCeEEEEECCC
Q 008356          142 SNGRVVFYDIRG  153 (568)
Q Consensus       142 ~DG~V~VWDlrt  153 (568)
                      .||.+.-+.++.
T Consensus       625 ~dG~l~~~~~d~  636 (1158)
T 3ei3_A          625 GDGALFYFGLNI  636 (1158)
T ss_dssp             TTSEEEEEEECT
T ss_pred             CCCeEEEEEEcC
Confidence            999987776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.93  E-value=2.8  Score=42.88  Aligned_cols=143  Identities=15%  Similarity=0.206  Sum_probs=78.5

Q ss_pred             EEEEEccCCCeEEEEEeC-------------CCeEEEEECCCCC-------ceeEEeccCCCCeEEEEEcC-CCCEEEEE
Q 008356           41 RVLDYSRNSRHLLVTAGD-------------DGTLHLWDTTGRS-------PKVSWLKQHSAPTAGISFSS-DDKIIASV   99 (568)
Q Consensus        41 s~Lafspdg~~lLaTgs~-------------DGtV~VWDl~t~~-------~~v~~l~~H~~~VtslafsP-dg~~LaSg   99 (568)
                      ..|+|.|+|. ++++.+.             .|.|.-++.+..-       .......+|. ....++|+| +++++++-
T Consensus       138 ~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          138 GRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             ceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence            5689999997 5655432             2456666655431       0112233443 357899999 66655544


Q ss_pred             eCCC---eEEEEECCC--------C--------ceeeEe-ecCCCeEEEEEe-------cCCCEEEEEEcCCeEEEEECC
Q 008356          100 GLDK---KLYTYDPGS--------R--------RPSSCI-TYEAPFSSLAFI-------DDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus       100 s~DG---tV~IWDlrt--------~--------~~v~~~-~h~~~ItsLafs-------Pdg~~LasGs~DG~V~VWDlr  152 (568)
                      ....   .|.+..-..        +        .++..+ ........++|.       .+|.++++.-..+.|...++.
T Consensus       216 ~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          216 HGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             CCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence            3222   244332110        0        122222 123457788883       467777766677889999987


Q ss_pred             CCCCceEEEeec-CCCCCeeEEEEccCCCeEEEe
Q 008356          153 GKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       153 t~~~~v~~l~~~-~h~~~VtsLafspdg~~Las~  185 (568)
                      ............ +....+..+++.|+|.+.++.
T Consensus       296 ~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          296 DNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             GGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             CCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            542222111111 224578899999988655544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.92  E-value=4.9  Score=43.07  Aligned_cols=147  Identities=14%  Similarity=0.168  Sum_probs=95.1

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-   81 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-   81 (568)
                      ||..+.||.=. ..++.|||+++...++.+.- .++++. -+|-.+.  .|+... +..|+-|++.+...+++.+..|. 
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~Vvf-WkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTF-WKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCE-EEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceE-EEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchh
Confidence            67777777765 67999999999998888874 345554 4777654  344443 46799999977655666666653 


Q ss_pred             ---CCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCce------------------------------------
Q 008356           82 ---APTAGISFSSDDKIIASVGL-------DKKLYTYDPGSRRP------------------------------------  115 (568)
Q Consensus        82 ---~~VtslafsPdg~~LaSgs~-------DGtV~IWDlrt~~~------------------------------------  115 (568)
                         ..|..-..+++.++++..+-       .|.+.+|..+.+..                                    
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k  227 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK  227 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCE
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence               35666666777777664432       23455555433210                                    


Q ss_pred             eeEe--ec----------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356          116 SSCI--TY----------------------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       116 v~~~--~h----------------------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ++.+  .+                      .+-..++..++.-.+++..+.-|.|++||+.++.
T Consensus       228 Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence            0000  00                      1123355566666788889999999999999985

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.89  E-value=1.5  Score=44.17  Aligned_cols=161  Identities=12%  Similarity=0.104  Sum_probs=94.6

Q ss_pred             ccCCCCEEEEEE--CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-------------CeEEEEE
Q 008356            2 YNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-------------GTLHLWD   66 (568)
Q Consensus         2 fSpdG~~LasGs--~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-------------GtV~VWD   66 (568)
                      |+.+|+.|+...  .++.|+..+. +|.....+..   ..+  --++++++.+.++...+             ..|+..+
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~-dg~~~~~l~~---~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNI-DGSNIHKLSN---DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEET-TSCSCEEEEE---EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcC-CCCCCEEccC---Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            345666666654  2566777775 3333344432   222  35678888766666654             4677788


Q ss_pred             CCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc
Q 008356           67 TTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        67 l~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs----~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~  142 (568)
                      +++.+.  ..+...  .  +..|++++++|+-..    .+..|+..++.......+..+..    .+++++++.|+-.+.
T Consensus        95 ~dg~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           95 RNGHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             TTSCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECT
T ss_pred             CCCCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeC
Confidence            877652  223222  1  236777888888765    34567777887555444443332    456778888886655


Q ss_pred             -CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          143 -NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       143 -DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                       ...|.+.++.+..+  +.+.  .  +... ..+.|++.+|+..
T Consensus       165 g~~~Iy~~~l~g~~~--~~l~--~--~~~~-~~~~P~g~~iy~t  201 (302)
T 3s25_A          165 KNGQLYRYDTASQSE--ALFY--D--CNCY-KPVVLDDTNVYYM  201 (302)
T ss_dssp             TTCCEEEEETTTTEE--EEEE--C--SCEE-EEEEEETTEEEEE
T ss_pred             CCceEEEEECCCCCE--EEEe--C--CCcc-ceeeecCCEEEEE
Confidence             67788888877532  2232  1  2222 3456888887665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.54  E-value=0.85  Score=46.84  Aligned_cols=143  Identities=14%  Similarity=0.207  Sum_probs=82.8

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe---ccCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL---KQHSAPTAGISFSSD---DKIIASVGL----D----K  103 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l---~~H~~~VtslafsPd---g~~LaSgs~----D----G  103 (568)
                      .....|+|.|+++  |+.+..+|.|+++|.... ..+..+   .........|+|+|+   +..|+.+..    +    .
T Consensus        29 ~~P~~ia~~pdG~--l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGR--YLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTE--EEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCCe--EEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            3456799999986  555567799999974332 222221   122356899999997   455544432    3    5


Q ss_pred             eEEEEECCCC--c---e--e-eEee--cCCCeEEEEEecCCCEEEEEEc-------------CCeEEEEECCCCC---C-
Q 008356          104 KLYTYDPGSR--R---P--S-SCIT--YEAPFSSLAFIDDDWILTAGTS-------------NGRVVFYDIRGKP---Q-  156 (568)
Q Consensus       104 tV~IWDlrt~--~---~--v-~~~~--h~~~ItsLafsPdg~~LasGs~-------------DG~V~VWDlrt~~---~-  156 (568)
                      .|..|+....  .   .  + ..+.  .......|+|.|||+++++.+.             .|.|.-++.+..-   . 
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6888887654  1   1  1 1122  1223567999999986666432             2567777765430   0 


Q ss_pred             --ceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 008356          157 --PLTVLRACSSSEAVSSLCWQR-AKPVFIDE  185 (568)
Q Consensus       157 --~v~~l~~~~h~~~VtsLafsp-dg~~Las~  185 (568)
                        ...++. .++. ....++|+| +|.++++.
T Consensus       186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEEE-ECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCcEEE-EccC-CcceEEEeCCCCCEEEEe
Confidence              012221 2443 345799999 66666555

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.36  E-value=0.45  Score=46.68  Aligned_cols=141  Identities=10%  Similarity=0.113  Sum_probs=76.1

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 008356            5 KDEHLASISLS-----GDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP   72 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~~   72 (568)
                      +++.++.|+.+     ..+.+||+.+.+-.  ..+.. ......++.+  +++ +++.|+.+     ..+.+||+.+.. 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~-  186 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGH-  186 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTE-
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCc-
Confidence            45566666644     36888998766532  22221 1111122222  444 77777754     458999987765 


Q ss_pred             eeEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEee--cCC-CeEEEEEecCCCEEEEEEc
Q 008356           73 KVSWLKQHSAP--TAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEA-PFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        73 ~v~~l~~H~~~--VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~~--h~~-~ItsLafsPdg~~LasGs~  142 (568)
                       ...+.....+  -.++... ++++++.|+.+     ..|.+||+.+.+-...-.  ... ...++.+  ++++++.|+.
T Consensus       187 -W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  262 (301)
T 2vpj_A          187 -WTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGY  262 (301)
T ss_dssp             -EEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             -EEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCc
Confidence             2222221111  1122222 56777777754     468999998875433321  111 1222222  5677777776


Q ss_pred             C-----CeEEEEECCCC
Q 008356          143 N-----GRVVFYDIRGK  154 (568)
Q Consensus       143 D-----G~V~VWDlrt~  154 (568)
                      +     ..|.+||+++.
T Consensus       263 ~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          263 DGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CSSSBEEEEEEEETTTT
T ss_pred             CCCcccccEEEEcCCCC
Confidence            5     35788888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.35  E-value=0.38  Score=47.31  Aligned_cols=144  Identities=16%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             CCCEEEEEECCC-----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-------CeEEEEECCCCCc
Q 008356            5 KDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-------GTLHLWDTTGRSP   72 (568)
Q Consensus         5 dG~~LasGs~DG-----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-------GtV~VWDl~t~~~   72 (568)
                      +++.++.|+.++     .+.+||+.+.+-...-.......-.+++.. ++. +++.|+.+       ..+.+||+.+.. 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~-  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGL-LYAVGGYDVASRQCLSTVECYNATTNE-  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTTTEECCCEEEEETTTTE-
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCE-EEEEeCCCCCCCccccEEEEEeCCCCc-
Confidence            456667777653     578889876653322111111111122222 343 67776643       358899987765 


Q ss_pred             eeEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcC
Q 008356           73 KVSWLKQHSAP--TAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        73 ~v~~l~~H~~~--VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~D  143 (568)
                       ...+.....+  -.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  ....-..++. -++++++.|+.+
T Consensus       185 -W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~  261 (302)
T 2xn4_A          185 -WTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDD  261 (302)
T ss_dssp             -EEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred             -EEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcC
Confidence             2222211111  1122222 56777777754     368999998865433221  1111112222 256777887765


Q ss_pred             C-----eEEEEECCCC
Q 008356          144 G-----RVVFYDIRGK  154 (568)
Q Consensus       144 G-----~V~VWDlrt~  154 (568)
                      +     .|.+||+.+.
T Consensus       262 ~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          262 GSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSSBCCCEEEEETTTT
T ss_pred             CCcccccEEEEcCCCC
Confidence            3     4888998875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.11  E-value=1.5  Score=46.89  Aligned_cols=101  Identities=10%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EeeC-----CCCCcEEEEEEccC---CCeEEEEEeC------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELKD-----PNEQVLRVLDYSRN---SRHLLVTAGD------------   58 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~--~l~~-----~h~~~Vs~Lafspd---g~~lLaTgs~------------   58 (568)
                      +|.|+|+++++--..+.|++++..+++...  .+..     .....+..|+|+|+   +..++++-+.            
T Consensus        33 a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~  112 (454)
T 1cru_A           33 LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPN  112 (454)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCE
T ss_pred             EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccccc
Confidence            367899866654333478888865555322  2221     02345678999995   4435554432            


Q ss_pred             CCeEEEEECCCCC-------ceeEEec-cCCCCeEEEEEcCCCCEEEEEeC
Q 008356           59 DGTLHLWDTTGRS-------PKVSWLK-QHSAPTAGISFSSDDKIIASVGL  101 (568)
Q Consensus        59 DGtV~VWDl~t~~-------~~v~~l~-~H~~~VtslafsPdg~~LaSgs~  101 (568)
                      ...|.-|+.....       ..+..+. ........|+|.||++++++.+.
T Consensus       113 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          113 QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            2356666653321       1111122 12234789999999998887664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.08  E-value=0.87  Score=44.47  Aligned_cols=133  Identities=11%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCc------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            6 DEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      ...|+....| +|++=....+.      ....+-...-..+.+++|+|++. +.++  .+|.++-.+..+.... . +.+
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~-~-W~~   77 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDND-N-WMG   77 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTC-C-HHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcc-c-ccc
Confidence            4456677777 66665544443      12223221123566899999887 4444  7787666665432211 1 111


Q ss_pred             CCCC--------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee------eEeec--CCCeEEEEEecCCCEEEEEEcC
Q 008356           80 HSAP--------TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS------SCITY--EAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        80 H~~~--------VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v------~~~~h--~~~ItsLafsPdg~~LasGs~D  143 (568)
                      -...        ..++.|.+++.+.++  .||.|+-++-.+....      ..+..  =..+..|.+.|+|.+.++.  |
T Consensus        78 s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d  153 (236)
T 1tl2_A           78 RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G  153 (236)
T ss_dssp             HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred             cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence            1222        378899999998887  5699988876432211      11211  1468999999999887777  7


Q ss_pred             CeEEE
Q 008356          144 GRVVF  148 (568)
Q Consensus       144 G~V~V  148 (568)
                      +.++-
T Consensus       154 g~lyr  158 (236)
T 1tl2_A          154 QQFYK  158 (236)
T ss_dssp             TEEEE
T ss_pred             CcEEe
Confidence            77543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.95  E-value=1.1  Score=44.38  Aligned_cols=143  Identities=13%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             CCCCEEEEEEC----C-------CcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCC--------CeEE
Q 008356            4 CKDEHLASISL----S-------GDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDD--------GTLH   63 (568)
Q Consensus         4 pdG~~LasGs~----D-------G~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~D--------GtV~   63 (568)
                      .+++.++.|+.    +       ..+.+||+.+.+-. .+.. .....-.+++.. ++ .+++.|+.+        ..+.
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEE
Confidence            35677778873    1       12778898776532 2211 011111112222 34 477777742        4589


Q ss_pred             EEECCCCCceeEEeccCCCC--eEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCceeeEee--cCC-CeEEEEEec
Q 008356           64 LWDTTGRSPKVSWLKQHSAP--TAGISFSSDDKIIASVGL-D-----KKLYTYDPGSRRPSSCIT--YEA-PFSSLAFID  132 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~--VtslafsPdg~~LaSgs~-D-----GtV~IWDlrt~~~v~~~~--h~~-~ItsLafsP  132 (568)
                      +||..+.+  ...+.....+  -.+++. -++++++.|+. +     ..+.+||+.+.+-...-.  ... ...++.+  
T Consensus       121 ~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  195 (315)
T 4asc_A          121 CYDRLSFK--WGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--  195 (315)
T ss_dssp             EEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred             EECCCCCc--EeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--
Confidence            99987764  2222211111  112222 35667777775 2     368999998765332221  111 1222222  


Q ss_pred             CCCEEEEEEcCC-----eEEEEECCCC
Q 008356          133 DDWILTAGTSNG-----RVVFYDIRGK  154 (568)
Q Consensus       133 dg~~LasGs~DG-----~V~VWDlrt~  154 (568)
                      ++++++.|+.++     .+.+||+.+.
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCC
Confidence            567888887654     4888998875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.88  E-value=0.73  Score=45.57  Aligned_cols=140  Identities=12%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             CCCEEEEEEC----C-----CcEEEEECCCCceeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECC
Q 008356            5 KDEHLASISL----S-----GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTT   68 (568)
Q Consensus         5 dG~~LasGs~----D-----G~V~VWDl~tg~~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~   68 (568)
                      ++++++.|+.    +     ..+.+||+.+.+-..  .+... ......+.+  ++. +++.|+.+     ..+.+||..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-RNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-CBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC-ccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCC
Confidence            4455666665    2     468889987664322  11111 111122222  444 77777643     358899987


Q ss_pred             CCCceeEEeccCC---CCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEe--ecCC-CeEEEEEecCCCEE
Q 008356           69 GRSPKVSWLKQHS---APTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCI--TYEA-PFSSLAFIDDDWIL  137 (568)
Q Consensus        69 t~~~~v~~l~~H~---~~VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~--~h~~-~ItsLafsPdg~~L  137 (568)
                      +..  ...+....   ....++.+  ++++++.|+.+     ..+.+||+.+.+-...-  .... ...++.+  +++++
T Consensus       146 ~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy  219 (308)
T 1zgk_A          146 RDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIY  219 (308)
T ss_dssp             TTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred             CCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEE
Confidence            664  22222111   11122222  56777777654     45899999876533221  1111 1222223  56777


Q ss_pred             EEEEcC-----CeEEEEECCCC
Q 008356          138 TAGTSN-----GRVVFYDIRGK  154 (568)
Q Consensus       138 asGs~D-----G~V~VWDlrt~  154 (568)
                      +.|+.+     ..|.+||+.+.
T Consensus       220 v~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          220 AAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EECCBCSSSBCCCEEEEETTTT
T ss_pred             EEeCCCCCCccceEEEEeCCCC
Confidence            777764     45999999875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.83  E-value=0.75  Score=47.15  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=61.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEee------CCCCCcEEEEEEccC---CCeEEEEEeC-------CCeEEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK------DPNEQVLRVLDYSRN---SRHLLVTAGD-------DGTLHL   64 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~------~~h~~~Vs~Lafspd---g~~lLaTgs~-------DGtV~V   64 (568)
                      +|.|+|++|+++...|.|++++. +++....+.      .........|+|+|+   +..++++-..       ...|..
T Consensus        24 ~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r  102 (353)
T 2g8s_A           24 AFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGY  102 (353)
T ss_dssp             EECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEE
T ss_pred             EEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEE
Confidence            47789984555667899999985 343221111      112345678999996   4435554333       235666


Q ss_pred             EECCCCCce---eE-Eecc------CCCCeEEEEEcCCCCEEEEEeCC-------------CeEEEEECCC
Q 008356           65 WDTTGRSPK---VS-WLKQ------HSAPTAGISFSSDDKIIASVGLD-------------KKLYTYDPGS  112 (568)
Q Consensus        65 WDl~t~~~~---v~-~l~~------H~~~VtslafsPdg~~LaSgs~D-------------GtV~IWDlrt  112 (568)
                      |++......   .. .+..      .......|+|.||+.++++.+..             ++|.-+|...
T Consensus       103 ~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A          103 GRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             EEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence            776543100   11 1111      11224679999999766665442             4677777653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.70  E-value=2  Score=42.43  Aligned_cols=143  Identities=14%  Similarity=0.182  Sum_probs=73.1

Q ss_pred             CCCCEEEEEEC----CC-------cEEEEECCCCceeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCC-------CeEE
Q 008356            4 CKDEHLASISL----SG-------DLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDD-------GTLH   63 (568)
Q Consensus         4 pdG~~LasGs~----DG-------~V~VWDl~tg~~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-------GtV~   63 (568)
                      .++.+++.|+.    ++       .+.+||..+.+-..  .+... ......+.+  ++ .+++.|+.+       ..+.
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-RCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-BCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-ccccceEEE--CC-EEEEEcCccCCCCcccceEE
Confidence            35667777773    12       17788887655322  11111 111122222  34 477777754       3488


Q ss_pred             EEECCCCCceeEEeccCCCCe--EEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeEee--cCCCeEEEEEecC
Q 008356           64 LWDTTGRSPKVSWLKQHSAPT--AGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDD  133 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~V--tslafsPdg~~LaSgs~------DGtV~IWDlrt~~~v~~~~--h~~~ItsLafsPd  133 (568)
                      +||..+.+  ...+.....+.  .+++. .++++++.|+.      -..+.+||+.+.+-...-.  ......+++. -+
T Consensus       131 ~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~  206 (318)
T 2woz_A          131 CYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HK  206 (318)
T ss_dssp             EEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred             EEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-EC
Confidence            88987665  22222211111  11222 35667777764      2358999998875433221  1111112222 25


Q ss_pred             CCEEEEEEcC-----CeEEEEECCCC
Q 008356          134 DWILTAGTSN-----GRVVFYDIRGK  154 (568)
Q Consensus       134 g~~LasGs~D-----G~V~VWDlrt~  154 (568)
                      +++++.|+.+     ..|.+||+.+.
T Consensus       207 ~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          207 GKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CEEEEEcCcCCCCccceEEEEECCCC
Confidence            6777777653     34778998875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.56  E-value=1.6  Score=45.14  Aligned_cols=101  Identities=15%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--Eee---CCCCCcEEEEEEccC---CCeEEEEE--eCCCeEEEEECCCC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELK---DPNEQVLRVLDYSRN---SRHLLVTA--GDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~--~l~---~~h~~~Vs~Lafspd---g~~lLaTg--s~DGtV~VWDl~t~   70 (568)
                      +|.|||+++++--..|.|++++..+++...  .+.   .........|+++|+   +..++++-  ..++.|.-|.+...
T Consensus        38 a~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~  117 (347)
T 3das_A           38 APLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEK  117 (347)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTT
T ss_pred             EEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCC
Confidence            477899876665448999999876565422  121   112455788999985   33344432  24556666766541


Q ss_pred             -----C---c--eeEEec-cCCCCeEEEEEcCCCCEEEEEeC
Q 008356           71 -----S---P--KVSWLK-QHSAPTAGISFSSDDKIIASVGL  101 (568)
Q Consensus        71 -----~---~--~v~~l~-~H~~~VtslafsPdg~~LaSgs~  101 (568)
                           .   .  ++..+. ........|.|.||+.++++.+.
T Consensus       118 ~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          118 KPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             SCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence                 1   1  111222 11223567999999988887653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.44  E-value=1.9  Score=48.43  Aligned_cols=148  Identities=11%  Similarity=0.135  Sum_probs=83.4

Q ss_pred             CCCEEEEEECC----CcEEEEECCCCceeEEe-e-----CCCCCcEEEEEEcc-CCCeEEEEEeCC------CeEEEEEC
Q 008356            5 KDEHLASISLS----GDLILHNLASGAKAAEL-K-----DPNEQVLRVLDYSR-NSRHLLVTAGDD------GTLHLWDT   67 (568)
Q Consensus         5 dG~~LasGs~D----G~V~VWDl~tg~~v~~l-~-----~~h~~~Vs~Lafsp-dg~~lLaTgs~D------GtV~VWDl   67 (568)
                      ++..++.||.+    ..+.+||+.+++-...- .     ......-.+++... ++. +++.|+.+      ..+.+||.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEeC
Confidence            45667777753    46889998776543322 1     11111122333333 454 77777754      35888998


Q ss_pred             CCCCceeEEeccCC--CCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeeEee------cCCCeEEEEEecC-CCE
Q 008356           68 TGRSPKVSWLKQHS--APTAGISFSSDDKIIASVGLDK--KLYTYDPGSRRPSSCIT------YEAPFSSLAFIDD-DWI  136 (568)
Q Consensus        68 ~t~~~~v~~l~~H~--~~VtslafsPdg~~LaSgs~DG--tV~IWDlrt~~~v~~~~------h~~~ItsLafsPd-g~~  136 (568)
                      .+..  ...+....  ..-.+++...++++++.|+.++  .+.+||+.+.+-...-.      ......++.+..+ +++
T Consensus       476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTRE--WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTE--EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCc--EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            7754  22222111  1112233323788888888655  69999998865332221      1122334566655 667


Q ss_pred             EEEEEc--C-----CeEEEEECCCCC
Q 008356          137 LTAGTS--N-----GRVVFYDIRGKP  155 (568)
Q Consensus       137 LasGs~--D-----G~V~VWDlrt~~  155 (568)
                      ++.|+.  +     ..|.+||+.+..
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCc
Confidence            777765  2     458999998774

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.35  E-value=3.2  Score=40.89  Aligned_cols=139  Identities=13%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             EEEEEECCCcEEEEECCCCceeE-EeeCCCCCcEEEEEEccCCCeEEEEEeC-----C------CeEEEEECCCCCceeE
Q 008356            8 HLASISLSGDLILHNLASGAKAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGD-----D------GTLHLWDTTGRSPKVS   75 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~-~l~~~h~~~Vs~Lafspdg~~lLaTgs~-----D------GtV~VWDl~t~~~~v~   75 (568)
                      +++.|+  ..+.+||..+++-.. .+..+....-.++ ...++. +++.|+.     .      ..+.+||..+.+  ..
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~   80 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSL-VTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WL   80 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEE-ECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EE
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEE-EEECCE-EEEEcCcccCCCCCccccccceEEecCCCCe--EE
Confidence            344555  579999998876432 2221112222222 334555 7777773     1      127788887664  22


Q ss_pred             EeccCCCCe--EEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEc-
Q 008356           76 WLKQHSAPT--AGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTS-  142 (568)
Q Consensus        76 ~l~~H~~~V--tslafsPdg~~LaSgs~D--------GtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~-  142 (568)
                      .+.....+-  .+++.. ++++++.|+.+        ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+. 
T Consensus        81 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  158 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG  158 (315)
T ss_dssp             ECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred             ECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence            222211111  112222 56667777632        358999998765332211  1111112222 35677777776 


Q ss_pred             C-----CeEEEEECCCC
Q 008356          143 N-----GRVVFYDIRGK  154 (568)
Q Consensus       143 D-----G~V~VWDlrt~  154 (568)
                      +     ..+.+||+.+.
T Consensus       159 ~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          159 SDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTSCBCCCEEEEETTTT
T ss_pred             CCCcccceEEEEeCCCC
Confidence            2     45899998875

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.13  Score=53.27  Aligned_cols=144  Identities=11%  Similarity=0.111  Sum_probs=85.7

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeEEeeCCC-CCcEEEEEE--ccCCCeEEEEE-eCCCeEEEEECCCCCceeEEecc--
Q 008356            6 DEHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDY--SRNSRHLLVTA-GDDGTLHLWDTTGRSPKVSWLKQ--   79 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Laf--spdg~~lLaTg-s~DGtV~VWDl~t~~~~v~~l~~--   79 (568)
                      +.++++++.||.|+-+|.++|+.+-.++... ...+. ..-  .+.+..+++.. ..||.|+.+|..++..+...-..  
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            3478899999999999999999998887531 12222 110  01122234333 58999999998776422111100  


Q ss_pred             -CCCCeEE---EEE-c----CCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCe--------EEEEEe-----cCCCEE
Q 008356           80 -HSAPTAG---ISF-S----SDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF--------SSLAFI-----DDDWIL  137 (568)
Q Consensus        80 -H~~~Vts---laf-s----Pdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~I--------tsLafs-----Pdg~~L  137 (568)
                       ...++..   ... .    ..+..+++++.++.+...|+++|+.+..+....+.        .|....     ..+..|
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence             1122221   000 0    14667889999999999999999999888543221        122211     124677


Q ss_pred             EEEEcCCeEEEEE
Q 008356          138 TAGTSNGRVVFYD  150 (568)
Q Consensus       138 asGs~DG~V~VWD  150 (568)
                      +.+..+..|.+.+
T Consensus       169 ~ig~~~y~v~~~~  181 (339)
T 2be1_A          169 VIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEEEEECEECC
T ss_pred             EEecceEEEEEEC
Confidence            7887777777777

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.00  E-value=14  Score=41.28  Aligned_cols=163  Identities=13%  Similarity=0.096  Sum_probs=92.9

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-----cCC
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-----QHS   81 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-----~H~   81 (568)
                      ..|.+|..+| |..||..+.+... ........|.++.. .++  .|..+..+ -|..||..+..  ...+.     ...
T Consensus        74 g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~  145 (758)
T 3ott_A           74 TYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPN  145 (758)
T ss_dssp             TEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCC--EEEECHHHHCCSC
T ss_pred             CcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCC
Confidence            3556666555 7888987654322 11112234666654 344  36666666 57888987654  22221     123


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ec-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TY-----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h-----~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      ..|.++....++.+.+ +..+ -|..||..+++..... ..     ...|.++....++..|.+|+. +-|..||..+..
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~  222 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ  222 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence            4688888887777655 4444 4888898776543221 11     224888888887776666764 458889987642


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~La  183 (568)
                        ...+... ....|.++....+|.+.+
T Consensus       223 --~~~~~~l-~~~~i~~i~~d~~g~lWi  247 (758)
T 3ott_A          223 --IKQTEAF-HNNSIKSLALDGNGDLLA  247 (758)
T ss_dssp             --EEEEEEE-EEEEEEEEEECTTCCEEE
T ss_pred             --EEeccCC-CCCeEEEEEEcCCCCEEE
Confidence              1212111 123467777666554433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.72  E-value=4.7  Score=41.56  Aligned_cols=145  Identities=19%  Similarity=0.302  Sum_probs=84.8

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe----ccCCCCeEEEEEcCC---CCEEEEE---eCCCeEE
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL----KQHSAPTAGISFSSD---DKIIASV---GLDKKLY  106 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l----~~H~~~VtslafsPd---g~~LaSg---s~DGtV~  106 (568)
                      ..-..|+|.|+++ ++++--..|.|++++..++... +..+    .........|+++|+   ..+|+..   ..+..|.
T Consensus        32 ~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           32 NSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            3456799999997 6665544899999986554421 2111    123456899999995   3444432   2445666


Q ss_pred             EEECCCC-----c---eeeE---ee--cCCCeEEEEEecCCCEEEEEEc-------------CCeEEEEECCCCC---Cc
Q 008356          107 TYDPGSR-----R---PSSC---IT--YEAPFSSLAFIDDDWILTAGTS-------------NGRVVFYDIRGKP---QP  157 (568)
Q Consensus       107 IWDlrt~-----~---~v~~---~~--h~~~ItsLafsPdg~~LasGs~-------------DG~V~VWDlrt~~---~~  157 (568)
                      -|.+..+     .   ...+   +.  .......|+|.|||.+.++.+.             .|.|.-++.+...   ++
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            6665541     1   1111   21  2234567999999987666432             3566666665430   01


Q ss_pred             ---eEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          158 ---LTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       158 ---v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                         ..++ ..+|.. ...++|+|+|.+.++.
T Consensus       191 f~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          191 FPGSPVY-SYGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             STTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred             CCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence               1222 235544 4578999988777665

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.60  E-value=0.94  Score=44.47  Aligned_cols=143  Identities=13%  Similarity=0.105  Sum_probs=76.3

Q ss_pred             CCCEEEEEECC------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCC
Q 008356            5 KDEHLASISLS------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTG   69 (568)
Q Consensus         5 dG~~LasGs~D------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~---------DGtV~VWDl~t   69 (568)
                      ++++++.|+.+      ..+.+||+.+.+-...-.......-.++... +++ +++.|+.         -..+.+||..+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGL-IYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCE-EEEECCCCCCCCcccccceEEEeCCCC
Confidence            45566777755      4688999877653322111111111112222 444 6676653         34588999977


Q ss_pred             CCceeEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEe--ecC-CCeEEEEEecCCCEEEE
Q 008356           70 RSPKVSWLKQHSAP--TAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCI--TYE-APFSSLAFIDDDWILTA  139 (568)
Q Consensus        70 ~~~~v~~l~~H~~~--VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~--~h~-~~ItsLafsPdg~~Las  139 (568)
                      ..  ...+.....+  -.++... ++++++.|+.+     ..+.+||+.+.+-...-  ... ....++.+  ++++++.
T Consensus       179 ~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~  253 (306)
T 3ii7_A          179 ET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL  253 (306)
T ss_dssp             TE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred             Ce--EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence            65  2233221111  1122222 56777777653     35899999886533221  111 12223333  5778888


Q ss_pred             EEcC-----CeEEEEECCCC
Q 008356          140 GTSN-----GRVVFYDIRGK  154 (568)
Q Consensus       140 Gs~D-----G~V~VWDlrt~  154 (568)
                      |+.+     ..|.+||+.+.
T Consensus       254 GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ECBCSSSBCCEEEEEETTTT
T ss_pred             eCcCCCeeeeeEEEEcCCCC
Confidence            8754     46888998875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.33  E-value=13  Score=39.38  Aligned_cols=101  Identities=16%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             cEEEEEEccCCCeEEEEEeCC-CeEEEEECCCCCce-eEEecc------CCCCeEEEEEcCC---CCEEEEEeC------
Q 008356           39 VLRVLDYSRNSRHLLVTAGDD-GTLHLWDTTGRSPK-VSWLKQ------HSAPTAGISFSSD---DKIIASVGL------  101 (568)
Q Consensus        39 ~Vs~Lafspdg~~lLaTgs~D-GtV~VWDl~t~~~~-v~~l~~------H~~~VtslafsPd---g~~LaSgs~------  101 (568)
                      ....|+|.|+|+ ++++ ... +.|++++..++... +..+..      .......|+|+|+   +..|+.+..      
T Consensus        28 ~P~~~a~~pdG~-l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           28 KPHALLWGPDNQ-IWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SEEEEEECTTSC-EEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEcCCCc-EEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            446799999998 5555 455 47888876544321 222221      2345779999995   555544432      


Q ss_pred             -------CCeEEEEECCCC--c---eeeE---ee--cCCCeEEEEEecCCCEEEEEE
Q 008356          102 -------DKKLYTYDPGSR--R---PSSC---IT--YEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus       102 -------DGtV~IWDlrt~--~---~v~~---~~--h~~~ItsLafsPdg~~LasGs  141 (568)
                             ...|.-|++...  .   ...+   +.  .......|+|.|||++.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   235666665332  1   1111   21  234578999999998777644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.06  E-value=0.97  Score=44.65  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=74.1

Q ss_pred             CCCEEEEEECC-----CcEEEEECCCCceeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 008356            5 KDEHLASISLS-----GDLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP   72 (568)
Q Consensus         5 dG~~LasGs~D-----G~V~VWDl~tg~~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~~   72 (568)
                      ++++++.|+.+     ..+.+||+.+.+-..  .+.. ......++.+  ++ .+++.|+.+     ..+.+||+.+.. 
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~-  195 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNE-  195 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTE-
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCe-
Confidence            45556666543     368889987654322  1111 1111122222  34 477777654     458999987664 


Q ss_pred             eeEEeccCCC--CeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcC
Q 008356           73 KVSWLKQHSA--PTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus        73 ~v~~l~~H~~--~VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~D  143 (568)
                       ...+.....  .-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.+++.. ++++++.|+.+
T Consensus       196 -W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~  272 (308)
T 1zgk_A          196 -WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYD  272 (308)
T ss_dssp             -EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC
T ss_pred             -EeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcC
Confidence             222221111  11122222 56777777754     469999998865433221  11111122222 56777777754


Q ss_pred             -----CeEEEEECCCC
Q 008356          144 -----GRVVFYDIRGK  154 (568)
Q Consensus       144 -----G~V~VWDlrt~  154 (568)
                           ..|.+||+.+.
T Consensus       273 ~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          273 GHTFLDSVECYDPDTD  288 (308)
T ss_dssp             SSCBCCEEEEEETTTT
T ss_pred             CCcccceEEEEcCCCC
Confidence                 35778888765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.86  E-value=2.4  Score=41.33  Aligned_cols=137  Identities=12%  Similarity=0.068  Sum_probs=76.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-   73 (568)
                      +|+|+|.+.++  .+|.++-.+..+...      ...+-..--....++.|.+++. +.++  .||.|+-++-.+.... 
T Consensus        47 af~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~  121 (236)
T 1tl2_A           47 FLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDN  121 (236)
T ss_dssp             EECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCC
T ss_pred             EECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCc
Confidence            58898886666  778777767644221      1122110111146788999996 4444  5698887776332211 


Q ss_pred             -----eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eeeEee--cCCCeEEEEEecCCCEEEEE
Q 008356           74 -----VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR------PSSCIT--YEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        74 -----v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~------~v~~~~--h~~~ItsLafsPdg~~LasG  140 (568)
                           ...-..-=..+..|.|.|+|.+.+..  |+.++-.....+.      ....+.  .-...+.+.|.+++.+.++-
T Consensus       122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence                 11111111457999999999987776  7776543333221      111222  22234557788888777766


Q ss_pred             EcCCeE
Q 008356          141 TSNGRV  146 (568)
Q Consensus       141 s~DG~V  146 (568)
                        ++.+
T Consensus       200 --~g~~  203 (236)
T 1tl2_A          200 --GGKF  203 (236)
T ss_dssp             --TTEE
T ss_pred             --CCeE
Confidence              6643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.31  E-value=2.5  Score=43.17  Aligned_cols=143  Identities=10%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEE----eccCCCCeEEEEEcCC---CCEEEEEe-C-------CC
Q 008356           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSW----LKQHSAPTAGISFSSD---DKIIASVG-L-------DK  103 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~----l~~H~~~VtslafsPd---g~~LaSgs-~-------DG  103 (568)
                      ...|+|.|+++. |+.+...|.|++++.++... .+..    ..........|+|+|+   +..|+.+. .       ..
T Consensus        20 P~~i~~~pdG~~-l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHG-MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCC-EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCE-EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            467999999974 55566789999998543211 0111    1122345789999995   44444442 2       23


Q ss_pred             eEEEEECCCC--c---eeeEe---e----cCCCeEEEEEecCCCEEEEEEc-------------CCeEEEEECCCCC---
Q 008356          104 KLYTYDPGSR--R---PSSCI---T----YEAPFSSLAFIDDDWILTAGTS-------------NGRVVFYDIRGKP---  155 (568)
Q Consensus       104 tV~IWDlrt~--~---~v~~~---~----h~~~ItsLafsPdg~~LasGs~-------------DG~V~VWDlrt~~---  155 (568)
                      .|..|++...  .   ....+   .    .......|+|.|||.+.++.+.             .|.|.-+|.+...   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~  178 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD  178 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence            5766766533  1   11111   1    1122467999999955554332             2568778876531   


Q ss_pred             C--------ceEEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 008356          156 Q--------PLTVLRACSSSEAVSSLCWQR-AKPVFIDE  185 (568)
Q Consensus       156 ~--------~v~~l~~~~h~~~VtsLafsp-dg~~Las~  185 (568)
                      .        ...++. .+| .....++|++ +|.+.++.
T Consensus       179 npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          179 NPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             CTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEE
T ss_pred             CCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEe
Confidence            0        112222 234 3367899999 55544443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.10  E-value=1.5  Score=43.35  Aligned_cols=144  Identities=11%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             CCCEEEEEECC-------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCC
Q 008356            5 KDEHLASISLS-------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGRS   71 (568)
Q Consensus         5 dG~~LasGs~D-------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~------DGtV~VWDl~t~~   71 (568)
                      +++.++.|+.+       ..+.+||+.+.+-...-.......-.+++. .++. +++.|+.      -..+.+||..+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCCE
Confidence            45566777754       358888987665332211111111111222 3444 6777764      2358999998765


Q ss_pred             ceeEEeccCCC--CeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEc
Q 008356           72 PKVSWLKQHSA--PTAGISFSSDDKIIASVGLD-----KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        72 ~~v~~l~~H~~--~VtslafsPdg~~LaSgs~D-----GtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~  142 (568)
                        ...+.....  .-.+++.. ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+.
T Consensus       187 --W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~  262 (318)
T 2woz_A          187 --WKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGF  262 (318)
T ss_dssp             --EEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred             --EEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCe
Confidence              222222111  11122222 56777777653     357889998765433221  1111112222 24677777765


Q ss_pred             C--------------CeEEEEECCCC
Q 008356          143 N--------------GRVVFYDIRGK  154 (568)
Q Consensus       143 D--------------G~V~VWDlrt~  154 (568)
                      +              ..|.+||+.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          263 AMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             CCBC----CCBCCBCCCEEEEETTTT
T ss_pred             eccCCCCceeccceeeeEEEEeCCCC
Confidence            4              34777887765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.33  E-value=2.5  Score=42.37  Aligned_cols=138  Identities=12%  Similarity=0.042  Sum_probs=64.5

Q ss_pred             CcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCCceeEEeccCC---CCe
Q 008356           16 GDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGRSPKVSWLKQHS---APT   84 (568)
Q Consensus        16 G~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~------DGtV~VWDl~t~~~~v~~l~~H~---~~V   84 (568)
                      ..+.+||+.+.+-.  ..+....... .+++.. +++ +++.|+.      ...+.+||++........+....   ...
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNK-GDK-TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBS-CEEEEE-TTE-EEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCccc-ccEEEE-CCE-EEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            47899998776533  2222111111 222222 343 6777664      34578888732221233322211   111


Q ss_pred             EEEEEcCCCCEEEEEeCC----------------------CeEEEEECCCCceeeEeec-CCCeEEEEEecCCCEEEEEE
Q 008356           85 AGISFSSDDKIIASVGLD----------------------KKLYTYDPGSRRPSSCITY-EAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus        85 tslafsPdg~~LaSgs~D----------------------GtV~IWDlrt~~~v~~~~h-~~~ItsLafsPdg~~LasGs  141 (568)
                      ...+...++++++.|+.+                      ..+.+||+.+.+-...-.. .......+..-++++++.|+
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGG  324 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEE
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEee
Confidence            111222256777777632                      2578999987653332211 11111222334678888888


Q ss_pred             cCC------eEEEEECCCCCC
Q 008356          142 SNG------RVVFYDIRGKPQ  156 (568)
Q Consensus       142 ~DG------~V~VWDlrt~~~  156 (568)
                      .++      .|.++++++.+.
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSC
T ss_pred             eCCCCCEeeeEEEEEEcCcEe
Confidence            653      366678887643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.31  E-value=26  Score=39.02  Aligned_cols=166  Identities=13%  Similarity=0.107  Sum_probs=93.7

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEee----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc----
Q 008356            8 HLASISLSGDLILHNLASGAKAAELK----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ----   79 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~----~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~----   79 (568)
                      .|..+..+ -|..+|..+++.. .+.    ......|.++....++.  |..|..+| |..||..+..........    
T Consensus       114 ~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~  188 (758)
T 3ott_A          114 TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQ  188 (758)
T ss_dssp             EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC--EEEEETTE-EEEEETTTTEEEEECCCCCTTC
T ss_pred             cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC--EEEEeCCC-HhhCccCCCceEEecCCCcccc
Confidence            45555555 5778887665543 231    11234677777777776  44556654 777887655411111111    


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      ....|.++....++..|..+.. +-|..+|..+++...... ....|.++....+|.+. +|+. +-|.+++..+..  .
T Consensus       189 ~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~--~  263 (758)
T 3ott_A          189 SNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTP--L  263 (758)
T ss_dssp             SSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSC--C
T ss_pred             ccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCc--E
Confidence            1224888888877775555554 458889988765432211 23357888887777654 4554 458888876642  2


Q ss_pred             EEEeec------CCCCCeeEEEEccCCCeEE
Q 008356          159 TVLRAC------SSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       159 ~~l~~~------~h~~~VtsLafspdg~~La  183 (568)
                      ..+...      -....|.++..+.+|.+.+
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  294 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL  294 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTCCEEE
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE
Confidence            222110      0123577887777665443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.31  E-value=5.2  Score=39.99  Aligned_cols=92  Identities=14%  Similarity=0.062  Sum_probs=44.2

Q ss_pred             CeEEEEECCCCCceeEEeccC--CCCe-EEEEEcCCCCEEEEEeC------CCeEEEEEC--CCCceeeEee--cCC-Ce
Q 008356           60 GTLHLWDTTGRSPKVSWLKQH--SAPT-AGISFSSDDKIIASVGL------DKKLYTYDP--GSRRPSSCIT--YEA-PF  125 (568)
Q Consensus        60 GtV~VWDl~t~~~~v~~l~~H--~~~V-tslafsPdg~~LaSgs~------DGtV~IWDl--rt~~~v~~~~--h~~-~I  125 (568)
                      ..+.+||..+..-  ..+...  .... .+++.. ++++++.|+.      ...+.+||+  .+.+-...-.  ... ..
T Consensus       168 ~~v~~yd~~~~~W--~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQQW--SYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTTEE--EEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             ccEEEEeCCCCcE--EECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            5799999977652  222211  1111 233333 5666676663      335778887  4433222111  111 11


Q ss_pred             EEEEEecCCCEEEEEEcC----------------------CeEEEEECCCC
Q 008356          126 SSLAFIDDDWILTAGTSN----------------------GRVVFYDIRGK  154 (568)
Q Consensus       126 tsLafsPdg~~LasGs~D----------------------G~V~VWDlrt~  154 (568)
                      ...+...++++++.|+.+                      ..+.+||+.+.
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~  295 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG  295 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence            222223356777777642                      25788998865

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.19  E-value=30  Score=38.18  Aligned_cols=191  Identities=9%  Similarity=0.030  Sum_probs=109.6

Q ss_pred             CCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEEc--cCCCeEEEEEeCC-------CeE---------EEE
Q 008356            5 KDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYS--RNSRHLLVTAGDD-------GTL---------HLW   65 (568)
Q Consensus         5 dG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafs--pdg~~lLaTgs~D-------GtV---------~VW   65 (568)
                      ||++|..-.. +..|...++...++-..+..+....+..++|-  |+.. +++++++.       |..         -+|
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e~~~P~pndg~~~~~~~~~~y~~f  219 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAEFIIPHPNDGKVFDLQDENSYTMY  219 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEecceeeccCCCCCcccccCChhhceEE
Confidence            6778887764 56788999998888877777788889999987  5666 66666543       221         111


Q ss_pred             ---ECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------------eEE---------------------
Q 008356           66 ---DTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---------------KLY---------------------  106 (568)
Q Consensus        66 ---Dl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG---------------tV~---------------------  106 (568)
                         |..+.+...+.+.  ....-.+...+++++.++.+.+.               .|.                     
T Consensus       220 ~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          220 NAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence               1112211111111  11222344456777776655421               233                     


Q ss_pred             ----EEECCC----C-ceeeEeecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCC--------CceEE-EeecCCC
Q 008356          107 ----TYDPGS----R-RPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKP--------QPLTV-LRACSSS  167 (568)
Q Consensus       107 ----IWDlrt----~-~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~--------~~v~~-l~~~~h~  167 (568)
                          +.|.+.    + ..+..+........+..+|||+++++++. +.+|.|+|.+...        .+... .....-.
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence                444433    1 12222333444557889999999988774 7889999998411        01111 1111122


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       168 ~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      -.....+|.++|            ..+.+.-.|..|..|++..
T Consensus       378 lGPlHt~Fd~~G------------~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          378 LGPLHTTFDGRG------------NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SCEEEEEECSSS------------EEEEEETTTTEEEEEEHHH
T ss_pred             CcccEEEECCCC------------ceEeeeeecceEEEEeccH
Confidence            345667888754            3344445689999998753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.88  E-value=2  Score=48.23  Aligned_cols=147  Identities=13%  Similarity=0.114  Sum_probs=79.6

Q ss_pred             CCCEEEEEECC------CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEE
Q 008356            5 KDEHLASISLS------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSW   76 (568)
Q Consensus         5 dG~~LasGs~D------G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~   76 (568)
                      +++.++.||.+      ..+.+||+.+.+-...-.......-.+++...++. +++.|+.++  .+.+||..+..  ...
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~--W~~  527 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEI--FKD  527 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSC-EEEECCBCSSCSEEEEETTTTE--EEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCE-EEEECCCCCCCCEEEEECCCCc--eEE
Confidence            56667777654      35888998765422111111111112233323555 778887654  69999997765  222


Q ss_pred             ecc------CCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEEEECCCCc------eeeEee--cCCC-eEEEEEecC
Q 008356           77 LKQ------HSAPTAGISFSSD-DKIIASVGL--D-----KKLYTYDPGSRR------PSSCIT--YEAP-FSSLAFIDD  133 (568)
Q Consensus        77 l~~------H~~~VtslafsPd-g~~LaSgs~--D-----GtV~IWDlrt~~------~v~~~~--h~~~-ItsLafsPd  133 (568)
                      +..      ......++.+..+ +++++.|+.  +     ..+.+||+.+.+      -.....  .... -.+++...+
T Consensus       528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~  607 (695)
T 2zwa_A          528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP  607 (695)
T ss_dssp             CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred             ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence            221      1111233555554 667777765  2     468999998876      111111  1111 123333334


Q ss_pred             CCEEEEEEcC--------CeEEEEECCCC
Q 008356          134 DWILTAGTSN--------GRVVFYDIRGK  154 (568)
Q Consensus       134 g~~LasGs~D--------G~V~VWDlrt~  154 (568)
                      +++++.|+.+        ..|.+||+.+.
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            6777787743        45899999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.66  E-value=3.9  Score=49.83  Aligned_cols=201  Identities=10%  Similarity=0.122  Sum_probs=113.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H-   80 (568)
                      .||..+.||.-. ..+++|||+++...++.+.- ...++. -+|-....  |+..+ +..|+-|++.+...+++.+..| 
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~Vvf-WkWis~~~--l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTF-WKWISLNT--VALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceE-EEecCCCe--eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            367777777664 67899999998888777764 344444 57776543  44433 3679999997655555555555 


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceeeEeecCCCeEEEEEec--C-CCEEEEEEc---CC
Q 008356           81 ---SAPTAGISFSSDDKIIASVG-------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFID--D-DWILTAGTS---NG  144 (568)
Q Consensus        81 ---~~~VtslafsPdg~~LaSgs-------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP--d-g~~LasGs~---DG  144 (568)
                         ...|..-..+++.++++..|       -.|.+.+|..+.+.....-+|.+....+....  . ..+++.+..   .+
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~  226 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence               45677777788888887655       24678888887654433334444443333321  1 123332222   26


Q ss_pred             eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC--CeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK--PVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg--~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      +++|-++........     .-......+-|.|+.  .+-+.-.-+....+++--+.-|.|.++|+.....
T Consensus       227 kLhi~Ei~~~~~~~~-----~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          227 KLHIIEVGTPPTGNQ-----PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             eEEEEecCCCccCCC-----CCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence            899998854310000     111112334444431  1111111112233344445589999999987654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.58  E-value=11  Score=40.34  Aligned_cols=141  Identities=11%  Similarity=0.114  Sum_probs=96.2

Q ss_pred             CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEE
Q 008356           58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        58 ~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~L  137 (568)
                      ++..|.|-|+.......+.-..    .-+.-.+|..+.|+.-. ..++.++|+++.+.+..+.....|.--.|-.+ +.|
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l  119 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTV  119 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEE
T ss_pred             CCCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeE
Confidence            3347889999776543332221    23345688778777665 67899999999999988887778888888765 456


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecC--CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACS--SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~--h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      +..+ +..|+-|++.....|.+++..+.  ....|..-..+++.+|++..+-......     ..|.+.+|.+..
T Consensus       120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~-----v~G~mQLYS~er  188 (494)
T 1bpo_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR-----VVGAMQLYSVDR  188 (494)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE-----EEEEEEEEESTT
T ss_pred             EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc-----ccceEEEeeccc
Confidence            6554 46899999988778888887432  2356778888999999765532211111     146677776643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.30  E-value=3.8  Score=45.21  Aligned_cols=102  Identities=9%  Similarity=-0.019  Sum_probs=68.7

Q ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCC------C------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008356           40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR------S------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT  107 (568)
Q Consensus        40 Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~------~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~I  107 (568)
                      ...+.++|+|+++++.|--+.+|.|+|++..      +      ..+.... -.-.....+|.++|+-..+.--|..|..
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            3457899999977777778999999998631      1      1122222 3345677899999966666679999999


Q ss_pred             EECCCC----------ceeeEeecCCCeEEEEE------ecCCCEEEEEEc
Q 008356          108 YDPGSR----------RPSSCITYEAPFSSLAF------IDDDWILTAGTS  142 (568)
Q Consensus       108 WDlrt~----------~~v~~~~h~~~ItsLaf------sPdg~~LasGs~  142 (568)
                      |++...          ..+..+.....+-.+.-      .++|++|++...
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            998642          23334443444444444      468999998754

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=84.61  E-value=35  Score=34.18  Aligned_cols=200  Identities=11%  Similarity=0.021  Sum_probs=108.5

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 008356            4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---   73 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~---   73 (568)
                      ++..++++.+.+|.|+-..+..-+       -+..+.-...+.+..+......+ .++..+..|.++-+....-...   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCCCCcc
Confidence            466788999999999988764321       11122212334444444444444 5777788999877765321100   


Q ss_pred             --------eEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCC-------CceeeEeecCCCeEEEEEecCCC
Q 008356           74 --------VSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGS-------RRPSSCITYEAPFSSLAFIDDDW  135 (568)
Q Consensus        74 --------v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt-------~~~v~~~~h~~~ItsLafsPdg~  135 (568)
                              ...+. ..+.|.++...+   +..+|+..+..|.++...+..       +.....+...+.+..+....+..
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence                    01122 233455554332   467888999999999887743       22222233456677666666667


Q ss_pred             EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          136 ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       136 ~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .++..+.+|.+..+....-..    ..  .....|..+.+.++...+... -..++..++..+..|.++..++..+.
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~----~g--R~~~Gv~~i~L~~~d~vv~~~-~v~~~~~l~~vt~~G~~kr~~~~e~~  233 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRL----TN--RGTQGVCGMKLKEGDLFVKVL-SVKENPYLLIVSENGYGKRLNMSKIS  233 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCB----CC--TTBCCEECCCCCTTCCEEEEE-ECTTCSEEEEEETTSEEEEEEGGGSC
T ss_pred             EEEEEeCCCcEEEEEHHHccc----cC--CCCCCeEeEEeCCCCEEEEEE-EECCCCeEEEEECCCceEEEEHHHhc
Confidence            888999999999998764210    00  112233334433322222111 11122334455557777777665443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=80.82  E-value=3.5  Score=42.44  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=63.1

Q ss_pred             EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEc--CCCCEEEEE--eCCCeEEEEECCCCceeeEee-----cC
Q 008356           52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS--SDDKIIASV--GLDKKLYTYDPGSRRPSSCIT-----YE  122 (568)
Q Consensus        52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslafs--Pdg~~LaSg--s~DGtV~IWDlrt~~~v~~~~-----h~  122 (568)
                      +++.++.||.|+-+|..+++.+.+.-.....++....-.  +.+..++.+  ..||.|+.+|..+|.....+.     ..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            688999999999999988874322211111222221100  112244444  589999999998886554442     12


Q ss_pred             CCeEE---EEE-e----cCCCEEEEEEcCCeEEEEECCCCC
Q 008356          123 APFSS---LAF-I----DDDWILTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       123 ~~Its---Laf-s----Pdg~~LasGs~DG~V~VWDlrt~~  155 (568)
                      .++..   ..+ .    ..+..+++|+.+|++...|+++++
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            22221   000 0    145688999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	568
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 4/152 (2%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
                     S +      L ++  G            +   + +  N      T  DD 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI-NAICFFPNGNAF-ATGSDDA 248

Query: 61  TLHL-WDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119
           T  L      +                +SFS   +++ +   D     +D      +  +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 120 T-YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
             ++   S L   DD   +  G+ +  +  ++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV------------------ 42
             N     +AS S    + +  +A+    AEL++    V  +                  
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102
              S      L++   D T+ +WD +     +  L  H     G+ F S  K I S   D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 103 KKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
           K L  +D  ++R    +  +E   +SL F      +  G+ +  V  ++
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL 101
             ++++    +    ++  +H+++    +  +V  LK+H+    G+ ++ D   I + G 
Sbjct: 13  HAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 102 DKKLYTYDP 110
           D+  Y +  
Sbjct: 72  DRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 5/122 (4%)

Query: 45  YSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK 104
            +  +   LV AG D    L+     + K+S            S            LDKK
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 105 LYTYDPGSRRPSSCITYEAPFSSLAFIDDD----WILTAGTSNGRVVFYDIRGKPQPLTV 160
             +    +        ++   S ++ +               +G +  +D+R     L  
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367

Query: 161 LR 162
           L+
Sbjct: 368 LK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 6/71 (8%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 83  PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA---PFSSLAFIDDDWILTA 139
           P +  +++ D   IA    + +++ Y+    +       +      + + +  D   +  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 140 GTSNGRVVFYD 150
             ++     + 
Sbjct: 69  CGTDRNAYVWT 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102
           L ++   +   V+ G D  L+ W T        +  + S+       S DDK I +   D
Sbjct: 271 LKFAYCGK-WFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

Query: 103 KKLYTYD 109
           KK   Y+
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 24/76 (31%)

Query: 76  WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW 135
            L  H +    + F+   K   S G D  L  +              +   S     DD 
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319

Query: 136 ILTAGTSNGRVVFYDI 151
            +  G+ + +   Y++
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 45  YSRNSRHLLVTAGDDGTLHLWDTTGRSP------KVSWLKQHSAPTAGISFSSDDKIIAS 98
            S      +     D  + +WD+           +      H      + F+ D + + S
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 99  VGLDKKLYTYDPGSRRPSS-------------CITYEAPFSSLAFIDDDWILTAGTSNGR 145
             LD+ +  ++  +    S              I ++    S+A   +D  + +G+ +  
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187
           V+F+D +    PL +L+   +S  V S+       +  +   
Sbjct: 332 VLFWDKK-SGNPLLMLQGHRNS--VISVAVANGSSLGPEYNV 370

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 19/125 (15%)

Query: 2   YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-----------EQVLRVLDYSRNSR 50
           +    + + S SL   + L NL +    ++ K PN           +  +  +  ++N  
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 51  HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS------APTAGISFSSDDKIIASVGLDKK 104
           ++ ++   D  +  WD    +P +  L+ H       A   G S   +  + A+   D K
Sbjct: 322 YI-LSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 105 LYTYD 109
              + 
Sbjct: 380 ARIWK 384

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 6/60 (10%), Positives = 20/60 (33%)

Query: 51  HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP 110
             + +A  D T+ +W+      + +           +      + + S+  +  +   +P
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
            ++     +AS S    + + N+A+      +        + L     ++  LV+   +G
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQALVSISANG 303

Query: 61  TLHLWD 66
            ++  +
Sbjct: 304 FINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 3/86 (3%)

Query: 41  RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG 100
            VL  +     +    G   +++       +       +HS  T     S      AS  
Sbjct: 21  VVLGNTPAGDKIQYCNGT--SVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 101 LDKKLYTYDPGSRRPSSCITYEAPFS 126
           +   +  +D          T      
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSG 103

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 13/147 (8%), Positives = 41/147 (27%), Gaps = 6/147 (4%)

Query: 32  LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS 91
           L+     V+  L +  N    ++T  DD  + ++D+  +   +  L  H      + ++ 
Sbjct: 8   LRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKYAH 63

Query: 92  DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT--AGTSNGRVVFY 149
              +++                       + +    L  ++   I     G+ +  +  +
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 150 DIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            +  +                 +    
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEEN 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 5/54 (9%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 53  LVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLY 106
           ++ +G +   ++++        + + + +     ++F     ++A+V  D + +
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF-KGKTLVAAVEKDGQSF 348

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 54  VTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
            T   D  + ++        +  L  H      + + +   ++ S G D  +  ++
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 11/64 (17%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 3   NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62
             +++ +A+ SL  ++ ++++    K  +  + ++  +  L +   S   LV++G D  +
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACI 281

Query: 63  HLWD 66
             W+
Sbjct: 282 KRWN 285

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 32/311 (10%), Positives = 71/311 (22%), Gaps = 17/311 (5%)

Query: 50  RHLLVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYT 107
           R  ++       L + DT      KV  +            +   +   A+V   + L  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 108 YDPGSRRPSSCITYEAP------FSSLAFIDDDWILTAGTSNGRVVFYDIRGK------- 154
            D  +      I    P          A   D   L    S  R+       +       
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 155 -PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213
             + L+  +A  +   ++ L W R                   G + +   +        
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 214 TSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYN 273
                L+           + P   A                                  +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 274 FKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDG 333
                   +P         ++ + +D  + A    +P+     S+   +      +    
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTV-WLGGA 299

Query: 334 SNEHSVFDWKS 344
             + + +D ++
Sbjct: 300 LGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 17/171 (9%)

Query: 7   EHLASISLSGDLILHNLASGAKAAELKDPNE-QVLRVLDYSRNSRHLLVTAGDDGTLHLW 65
           +++ + +    L++ +    A    +   +      V   +   R    T     +L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 66  DTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL------------YTYD 109
           D           +S  ++      G + S D K +A      +L              YD
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 110 PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160
             +             + LA+  D   L     +  V+  +     +   +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 54  VTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109
            T   D ++ +W+        +     H+  +       ++  I S G D  +  ++
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF 89
          L  S + + L  +A  +G ++ WD +       +   H+    GI  
Sbjct: 18 LSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 77  LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDD 134
              H+     +S S+D K + S   +  + ++D  +   +      +    + +      
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176
            + T    +  +      G     +   A   S     L   
Sbjct: 68  DLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.1 bits (108), Expect = 8e-06
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 10/137 (7%)

Query: 22  NLASGAKAAELKDPNEQVLRVLDYSRNSRHLL-VTAGDDGTLHLWDTTGRSPKVSWLKQH 80
            +    ++ ++    E   +      +  +L  VT  D G + L D   +   V  +   
Sbjct: 3   GMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKI-VKVIDTG 61

Query: 81  SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFI-------DD 133
            A       S+  + +  +G D ++   D  ++ P+     +    + +         +D
Sbjct: 62  YAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED 120

Query: 134 DWILTAGTSNGRVVFYD 150
            + +       +    D
Sbjct: 121 RYTIAGAYWPPQFAIMD 137

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 51  HLLVTAGDDGTLHLWDT-TGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTY 108
               T G D T+ +WD  T +  +   L +       +    + +  I S+ LD  L  Y
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

Query: 109 D 109
           +
Sbjct: 324 E 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 43  LDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSWLKQH-SAPTAGISFS--SDDKIIAS 98
           L Y   +  +    G    +   D    + P V     H S+    + FS     + + S
Sbjct: 23  LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82

Query: 99  VGLDKKLYTYDPGSRRPSSCI 119
                K+  +     + S+ +
Sbjct: 83  GDESGKVIVWGWTFDKESNSV 103

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 6/67 (8%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVL-RVLDYSRNSRHLLVTAGDD 59
           +     +  A++     + + ++ +     +     +Q+  + +         +++   D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 60  GTLHLWD 66
           GTL+ ++
Sbjct: 318 GTLNFYE 324

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 48  NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT 107
                   A + G L  +D   R      + +       +  S+D K +     D K+YT
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRK-----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 108 YD 109
           + 
Sbjct: 341 FP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 31  ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--QHSAPTAGIS 88
           +++   +  +  +    +   L +    DG+L ++    ++  V  L+  ++  P    +
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLL-LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 89  FSSDDKIIASVG 100
           F  +  +   VG
Sbjct: 64  FIDNTDLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 51  HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK 103
             L TAG DG +  W+   R    ++ K +      +  +  D I+     D 
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNILCLATSDD 314

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 29/318 (9%), Positives = 72/318 (22%), Gaps = 24/318 (7%)

Query: 49  SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYT 107
               ++       LH+ D    +   S +            + D++           +Y 
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 108 YDPGSRRPSSCITYEAPFSS-------LAF-IDDDWILTAGTSNGRVVFYDIRGKP---- 155
            D  + + +      +            A   D   +        R+  + +   P    
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 156 ------QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209
                      +R       V  +       +++          +  G    ++ + +  
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD-VKTGKYTVALPLRNWN 185

Query: 210 PSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPG-GPLARLHAP 268
               ++   L      S  +  S     A                          + H  
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245

Query: 269 RSSYNFKDDMEVFSPLVDVQPITPSLD--KLWDGHEGAKKDHLPIDKKPSSMLFPSSSRR 326
             +   +          D   I   L+    +D  +        +D     + F     +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305

Query: 327 FPYAEDGSNEHSVFDWKS 344
             Y     N+ +VF+  +
Sbjct: 306 L-YLGGTFNDLAVFNPDT 322

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 4/113 (3%)

Query: 3   NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62
               +  A+  L    +  +L +G    +      +        R+ +      G    L
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE--LYFTGLRSPKDPNQIYGVLNRL 274

Query: 63  HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115
             +D   +  K+            ++F      +   G    L  ++P +   
Sbjct: 275 AKYDL--KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 14/160 (8%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
                  H+ S SL   + + ++ +G     L         +        ++LV+   D 
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM----ELKDNILVSGNADS 237

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120
           T+ +WD        +    +   +A      +   + +   D  +  +D  +      + 
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 121 ------YEAPFSSLAFIDDDWILTAGTSNG----RVVFYD 150
                        +   +   +   G+ NG    +++  D
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 22 NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81
                    LK  ++ V+  L +  N    +V+  DD TL +W         + L  H+
Sbjct: 2  RRGELKSPKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWSAVTGKCLRT-LVGHT 57

Query: 82 APTAGISFSSD 92
                    +
Sbjct: 58 GGVWSSQMRDN 68

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 3/74 (4%)

Query: 49  SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYT 107
           S    +   +   + + D T      + +   S P  G   S D   +  +      +  
Sbjct: 1   STFAYIANSESDNISVIDVTSNKV-TATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSI 58

Query: 108 YDPGSRRPSSCITY 121
            D  +    + +  
Sbjct: 59  IDTATNNVIATVPA 72

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 1   MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG 60
           + +  D+++ S S    + + N ++      L      +       +    L+V+   D 
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDN 198

Query: 61  TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD------PGSRR 114
           T+ LWD    +                    D+K I S   D K+  +D      P +  
Sbjct: 199 TIRLWDIECGACLRVLEGHEELV---RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 115 PSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150
            + C+     +      L F D+  I+++   +  ++ +D
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQIVSSS-HDDTILIWD 293

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 52  LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-- 109
             VT  D G + L D +      + L    A       S+  + +  +G D K+   D  
Sbjct: 34  FSVTLRDAGQIALIDGSTYEI-KTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 110 PGSRRPSSCITYEAPFSSLAFI-----DDDWILTAGTSNGRVVFYD 150
                  + I   +   S+        +D + +       + V  D
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 137

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 49  SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT------------AGISFSSDDKII 96
                V+   DG L +WD      +    K +S               A    + +  ++
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82

Query: 97  ASVGLDKKLYTYDPGSRRPSSCITYE 122
           A+      L  Y       +  + +E
Sbjct: 83  ATTSFSGDLLFYRITREDETKKVIFE 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	568
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.87
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.85
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.83
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.81
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.67
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.63
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.62
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.62
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.55
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.47
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.4
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.38
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.32
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.32
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.3
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.13
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.85
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.79
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.79
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.68
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.45
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.43
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.32
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.25
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.22
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.13
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.93
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.91
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.88
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.84
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.18
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.85
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.77
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.32
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.67
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.2
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.99
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.67
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.33
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.39
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.54
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.56
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	81.94
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	81.67

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=5.4e-26  Score=223.76  Aligned_cols=190  Identities=15%  Similarity=0.142  Sum_probs=160.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---------   71 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---------   71 (568)
                      +|+|++++||+|+.||.|+|||+.+++.+..+.. |...|.+++|+|++. ++++|+.|+.+++|+.....         
T Consensus        62 ~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  139 (340)
T d1tbga_          62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSS-EEEEEETTCCEEEEESSSSCSCCCEEEEE
T ss_pred             EECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccce-eeeeecccceeecccccccccccccceec
Confidence            4899999999999999999999999999999886 677889999999987 78888888888887742211         


Q ss_pred             -----------------------------------------------------------------------------cee
Q 008356           72 -----------------------------------------------------------------------------PKV   74 (568)
Q Consensus        72 -----------------------------------------------------------------------------~~v   74 (568)
                                                                                                   ..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~  219 (340)
T d1tbga_         140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR  219 (340)
T ss_dssp             CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEE
Confidence                                                                                         012


Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      ..+.+|...|++++|+|++++|++++.|+.|++||++..+.+..+   .+...|.+++|+|++++|++|+.||.|+|||+
T Consensus       220 ~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            235668899999999999999999999999999999998877666   35677999999999999999999999999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      .+.+ ++..+.  +|.+.|++++|+|++++|+++            +.|+.|++||
T Consensus       300 ~~~~-~~~~~~--~H~~~V~~l~~s~d~~~l~s~------------s~Dg~v~iWd  340 (340)
T d1tbga_         300 LKAD-RAGVLA--GHDNRVSCLGVTDDGMAVATG------------SWDSFLKIWN  340 (340)
T ss_dssp             TTCC-EEEEEC--CCSSCEEEEEECTTSSCEEEE------------ETTSCEEEEC
T ss_pred             CCCc-EEEEEc--CCCCCEEEEEEeCCCCEEEEE------------ccCCEEEEeC
Confidence            9874 455555  799999999999977665554            5699999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.6e-25  Score=226.00  Aligned_cols=200  Identities=12%  Similarity=0.142  Sum_probs=166.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--DGtV~VWDl~t~~~~v~~   76 (568)
                      +|+|+|++||+|+.||.|+|||+.+++..  ..+.. |...|.+++|+++++ +|++++.  +..++||+++..+. ...
T Consensus        65 ~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~-~~~  141 (311)
T d1nr0a1          65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTS-NGN  141 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCB-CBC
T ss_pred             EEeCCCCeEeccccCceEeeeeeecccccccccccc-ccCcccccccccccc-ccccccccccccccccccccccc-ccc
Confidence            48999999999999999999999887643  44554 677899999999998 6777765  56699999988764 567


Q ss_pred             eccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           77 LKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      +..|...|++++|+|+++ .|++|+.|+.|++||+++++....+ .|...|.+++|+|++++|++++.|+.|++||++..
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccc
Confidence            889999999999999877 4888999999999999999888777 68899999999999999999999999999999876


Q ss_pred             CCceEEEe-----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          155 PQPLTVLR-----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       155 ~~~v~~l~-----~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      .. ...+.     ..+|...|++++|+|++++|+            +++.|+.|++||++.......
T Consensus       222 ~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~------------tgs~Dg~v~iwd~~t~~~~~~  275 (311)
T d1nr0a1         222 TK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA------------SASADKTIKIWNVATLKVEKT  275 (311)
T ss_dssp             CE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEE------------EEETTSEEEEEETTTTEEEEE
T ss_pred             cc-cccccccccccccccccccccccCCCCCEEE------------EEeCCCeEEEEECCCCcEEEE
Confidence            42 22222     236889999999999765554            446699999999987655443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-24  Score=219.09  Aligned_cols=194  Identities=17%  Similarity=0.196  Sum_probs=168.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|++++|++|+.||.|++||+...  +....+.. |...+.+++|++++. ++++++.|+.|++||+.+.+ ......
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~-~~~~~~  180 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT-LVRQFQ  180 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEEEEC
T ss_pred             EEcCCCCEEEEeeccccccccccccccccccccccc-ccccccccccccccc-cccccccccccccccccccc-cccccc
Confidence            48999999999999999999998744  44555664 677889999999987 89999999999999998876 366778


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                      .|...|++++|++++..+++++.|+.|++||+++++.+..+.+...|.+++|+|++++|++++.|+.|++||++....  
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--  258 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--  258 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccc--
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998742  


Q ss_pred             EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                        +....|...|++++|+|++++|+++            +.|+.|++||+.....
T Consensus       259 --~~~~~~~~~i~~v~~s~~g~~l~s~------------s~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         259 --YQLHLHESCVLSLKFAYCGKWFVST------------GKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             --EEECCCSSCEEEEEECTTSSEEEEE------------ETTSEEEEEETTTCCE
T ss_pred             --ccccccccccceEEECCCCCEEEEE------------eCCCeEEEEECCCCCE
Confidence              3344799999999999987665544            5588888888876544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.1e-25  Score=226.62  Aligned_cols=200  Identities=14%  Similarity=0.168  Sum_probs=164.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEe
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l   77 (568)
                      +|+|||++||+|+.||.|+|||+.+++  .+..+++ |...|.+|+|+|+++ +|++|+.|+.|+|||+.+... ....+
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~   91 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI   91 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCC-EEEEEECCCeEEEEeeccccccccccc
Confidence            589999999999999999999998775  4566776 778899999999998 899999999999999976652 24456


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      ..|...|++++|+|++++|++++.|++|++|++.........     .|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus        92 ~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_          92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence            788999999999999999999999999999998776543222     377889999999999999999999999999987


Q ss_pred             CCCC---------------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          153 GKPQ---------------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       153 t~~~---------------~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      ....               .........|...|.+++|+|++++|++            ++.|+.|++||+......
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s------------~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW------------VSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE------------EETTTEEEEEEGGGTTEE
T ss_pred             cCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc------------cccCCcceEEeeecccce
Confidence            5321               1123334478899999999997655544            456999999998765443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.5e-24  Score=205.79  Aligned_cols=188  Identities=14%  Similarity=0.249  Sum_probs=166.9

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      |+++++.+++++.|+.+++||+.+++.+..+.. |...+.+++|++++. +|++++.|+.|++|++.... ....+..|.
T Consensus       109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~  185 (317)
T d1vyhc1         109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKE-CKAELREHR  185 (317)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-EEEEECCCS
T ss_pred             ccCCCceEEeeccCcceeEeecccceeeeEEcc-CCCcceeeecccCCC-EEEEEeCCCeEEEEeeccce-eeEEEecCC
Confidence            688999999999999999999999999988886 677889999999987 89999999999999998877 466788899


Q ss_pred             CCeEEEEEcCCC--------------------CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEE
Q 008356           82 APTAGISFSSDD--------------------KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        82 ~~VtslafsPdg--------------------~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasG  140 (568)
                      ..+.++.|+|+.                    .++++++.|+.|++||+++++++..+ .|...|.+++|+|++++|++|
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            999999998753                    47899999999999999999988777 688999999999999999999


Q ss_pred             EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          141 TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       141 s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      +.||.|+|||+++.+ ++..+.  +|.+.|++++|+|++++|+++            +.|+.|++||
T Consensus       266 ~~dg~i~iwd~~~~~-~~~~~~--~h~~~V~~~~~s~~~~~l~s~------------s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNKR-CMKTLN--AHEHFVTSLDFHKTAPYVVTG------------SVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTSC-CCEEEE--CCSSCEEEEEECSSSSCEEEE------------ETTSEEEEEC
T ss_pred             ECCCeEEEEECCCCc-EEEEEc--CCCCCEEEEEEcCCCCEEEEE------------eCCCeEEEeC
Confidence            999999999999874 556666  799999999999976665544            6699999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.6e-24  Score=214.01  Aligned_cols=193  Identities=15%  Similarity=0.184  Sum_probs=161.1

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce---eEEe-eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK---AAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVS   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~---v~~l-~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~   75 (568)
                      +|+|+|++|++|+ ||.|+|||+.++..   +..+ ...|...|.+++|+|+++ +|++|+.||.|++||+..... ...
T Consensus        58 ~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~  135 (337)
T d1gxra_          58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-EEEEeeccccccccccccccccccc
Confidence            4899999999987 89999999976542   2222 234778899999999998 899999999999999976543 345


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+..|...|.+++|+|++.++++++.|+.|++||++++++.... .|...|.+++|++++..+++++.|+.|++||+++.
T Consensus       136 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~  215 (337)
T d1gxra_         136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67789999999999999999999999999999999998877666 58899999999999999999999999999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS  211 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~  211 (568)
                      + .   +..+.|...|.+++|+|+++++++            ++.|+.|++||++..
T Consensus       216 ~-~---~~~~~~~~~i~~l~~~~~~~~l~~------------~~~d~~i~i~d~~~~  256 (337)
T d1gxra_         216 R-Q---LQQHDFTSQIFSLGYCPTGEWLAV------------GMESSNVEVLHVNKP  256 (337)
T ss_dssp             E-E---EEEEECSSCEEEEEECTTSSEEEE------------EETTSCEEEEETTSS
T ss_pred             e-e---ecccccccceEEEEEcccccccce------------ecccccccccccccc
Confidence            3 2   333458899999999997655544            456999999998653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=8.7e-24  Score=203.78  Aligned_cols=207  Identities=16%  Similarity=0.216  Sum_probs=177.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|+|++++|++|+.||.|+|||+.+++.+..+.+ |...|.+++|++++. +++++..++.+.+|+..... ....+..|
T Consensus        24 ~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  100 (317)
T d1vyhc1          24 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFE-CIRTMHGH  100 (317)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSC-EEECCCCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccc-cccccccccccccccccccc-cccccccc
Confidence            4899999999999999999999999999999986 778899999999997 89999999999999998776 36667889


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      ...+.++.|+++++.+++++.|+.+++||+++++.+..+ .|...+.+++|++++++|++++.|+.|++|+++... ...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~  179 (317)
T d1vyhc1         101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKA  179 (317)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-eeE
Confidence            999999999999999999999999999999999888777 588899999999999999999999999999999874 344


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEec--------cCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDET--------TCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s--------~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      .+.  .|...+.+++|++++..+....        ....+.++++++.|+.|++||++....
T Consensus       180 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         180 ELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             EEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             EEe--cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence            444  7889999999999875543211        122455788888899999999876543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9e-24  Score=213.80  Aligned_cols=197  Identities=18%  Similarity=0.268  Sum_probs=162.0

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-----------------CCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-----------------PNEQVLRVLDYSRNSRHLLVTAGDDGTLH   63 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-----------------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~   63 (568)
                      +|+|||++||+|+ |+.|+|||+.+++.+..+..                 .+...|.+++|+|+++ +|++|+.||.|+
T Consensus        69 ~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~  146 (388)
T d1erja_          69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIR  146 (388)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             EECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC-cceecccccccc
Confidence            4899999999986 89999999999988776643                 2456699999999998 899999999999


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec-CCCEEEEEEc
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTS  142 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-dg~~LasGs~  142 (568)
                      +||....+ .+....+|...|.+++|++++..+++++.++.|++||+++........+.....++.+.+ ++++|++|+.
T Consensus       147 i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  225 (388)
T d1erja_         147 IWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  225 (388)
T ss_dssp             EEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             cccccccc-cccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence            99998876 467788999999999999999999999999999999999988887777777777777766 7899999999


Q ss_pred             CCeEEEEECCCCCCceEEEe-----ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          143 NGRVVFYDIRGKPQPLTVLR-----ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       143 DG~V~VWDlrt~~~~v~~l~-----~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      |+.|++||.+..... ..+.     ..+|...|.+++|+|++++|+            +++.|+.|++||++....
T Consensus       226 d~~i~i~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~------------s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         226 DRAVRVWDSETGFLV-ERLDSENESGTGHKDSVYSVVFTRDGQSVV------------SGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             TSCEEEEETTTCCEE-EEEC------CCCSSCEEEEEECTTSSEEE------------EEETTSEEEEEEC-----
T ss_pred             CCeEEEeecccCccc-eeeccccccccCCCCCEEEEEECCCCCEEE------------EEECCCcEEEEeccCCcc
Confidence            999999999976432 2221     236889999999999765554            446699999999876543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=4.9e-24  Score=209.15  Aligned_cols=198  Identities=16%  Similarity=0.210  Sum_probs=159.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------   73 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-------   73 (568)
                      +|+|++++|++|+.||.|++||+++++.+..+...|...|.+++|+|++.  +++++.|+.+++|+.......       
T Consensus        19 ~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~~~~~~~~~~~~~~~~~~   96 (299)
T d1nr0a2          19 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVAN   96 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--eecccceeeEEEeccCCccccccccccc
Confidence            58999999999999999999999999998888777888999999999986  567788999999997432100       


Q ss_pred             -----e--------------------E-------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--Ee
Q 008356           74 -----V--------------------S-------WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CI  119 (568)
Q Consensus        74 -----v--------------------~-------~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~--~~  119 (568)
                           .                    .       ........+.+++|+|++++|++++.|+.|++||+++++...  ..
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 0                    0       001123457889999999999999999999999998876543  34


Q ss_pred             ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecC
Q 008356          120 TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV  199 (568)
Q Consensus       120 ~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~  199 (568)
                      .|...|.+++|+|++++|++++.|+.|++||+.+............|...|++++|+|++++|++            ++.
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s------------gs~  244 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT------------GSL  244 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE------------EET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEE------------EcC
Confidence            78999999999999999999999999999999876433222233468999999999997666544            466


Q ss_pred             CCcEEcCCCCCCC
Q 008356          200 GDSILMPDPLPSV  212 (568)
Q Consensus       200 Dg~V~VWDlr~~~  212 (568)
                      |+.|++||++...
T Consensus       245 dg~i~iwd~~~~~  257 (299)
T d1nr0a2         245 DNSVIVWNMNKPS  257 (299)
T ss_dssp             TSCEEEEETTCTT
T ss_pred             CCEEEEEECCCCC
Confidence            9999999987654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=9.4e-24  Score=212.84  Aligned_cols=195  Identities=13%  Similarity=0.172  Sum_probs=164.6

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ   79 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~   79 (568)
                      +++|+|+.|+.+. ++.|.+||+.+++....+.+ |...|.+++|+|+++ +|++|+.||+|+|||+...... ...+..
T Consensus        24 a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~~~~~~  100 (311)
T d1nr0a1          24 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPV  100 (311)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             EEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCC-eEeccccCceEeeeeeecccccccccccc
Confidence            4689999999885 66799999999988888876 778899999999997 8999999999999999876543 456788


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCE-EEEEEcCCeEEEEECCCCC
Q 008356           80 HSAPTAGISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWI-LTAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~--DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~-LasGs~DG~V~VWDlrt~~  155 (568)
                      |...|.+++|+|++++|++++.  +..+++||+.+++.+..+ .|...|.+++|+|++++ |++|+.|+.|++||+++.+
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~  180 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  180 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             ccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccc
Confidence            9999999999999999999986  456999999998887776 58889999999999875 7889999999999999863


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       ....+.  .|...|+++.|+|+++++++            ++.|+.|++||++....
T Consensus       181 -~~~~~~--~~~~~i~~v~~~p~~~~l~~------------~~~d~~v~~~d~~~~~~  223 (311)
T d1nr0a1         181 -FKSTFG--EHTKFVHSVRYNPDGSLFAS------------TGGDGTIVLYNGVDGTK  223 (311)
T ss_dssp             -EEEEEC--CCSSCEEEEEECTTSSEEEE------------EETTSCEEEEETTTCCE
T ss_pred             -cccccc--cccccccccccCcccccccc------------ccccccccccccccccc
Confidence             334443  78999999999997665544            45699999999876543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.3e-23  Score=208.73  Aligned_cols=199  Identities=17%  Similarity=0.209  Sum_probs=150.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE--------------
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD--------------   66 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD--------------   66 (568)
                      +|+|++++|++|+.||.|++||...++.+..+.+ |...|.+++|++++. .+++++.++.|++||              
T Consensus       128 ~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  205 (388)
T d1erja_         128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIED  205 (388)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EECCCCCcceeccccccccccccccccccccccc-ccccccccccccccc-cccccccceeeeeeecccccccccccccc
Confidence            4899999999999999999999999988887776 556677777776654 445555555555555              


Q ss_pred             ----------------------------CCCCCce------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 008356           67 ----------------------------TTGRSPK------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS  112 (568)
Q Consensus        67 ----------------------------l~t~~~~------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt  112 (568)
                                                  .......      .....+|...|++++|+|++++|++++.|+.|++||+++
T Consensus       206 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence                                        4333211      112345788999999999999999999999999999986


Q ss_pred             Ccee-------------eEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356          113 RRPS-------------SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK  179 (568)
Q Consensus       113 ~~~v-------------~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg  179 (568)
                      ++..             ....|...|.+++|+|++++|++|+.||.|++||+++.+ ++..+.  +|.+.|.++++.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~l~--~H~~~V~~~~~~~~~  362 (388)
T d1erja_         286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQ--GHRNSVISVAVANGS  362 (388)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEEEE--CCSSCEEEEEECSSC
T ss_pred             CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEEEe--CCCCCEEEEEEecCc
Confidence            5432             122478899999999999999999999999999999874 555566  899999999987642


Q ss_pred             CeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          180 PVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       180 ~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .      ...++.+|++++.|+.|++||++.
T Consensus       363 ~------~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         363 S------LGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             T------TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             c------cCCCCCEEEEEeCCCEEEEEeeee
Confidence            1      234667888888899999999853

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.3e-22  Score=204.68  Aligned_cols=181  Identities=8%  Similarity=0.052  Sum_probs=148.9

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEee-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---eEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~-~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~---v~~   76 (568)
                      +|+|++++|++|+.|+.|+|||+.++.....+. ..|...|.+++|+|+++ .|++++.|+.|++|++......   ...
T Consensus        58 ~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          58 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccc
Confidence            489999999999999999999998776544432 23677899999999998 8999999999999998665432   344


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------eeeEe-ecCCCeEEEEEecCCCEE
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR------------------PSSCI-TYEAPFSSLAFIDDDWIL  137 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~------------------~v~~~-~h~~~ItsLafsPdg~~L  137 (568)
                      ...|...|.+++|+|++++|++++.|+.|++||+....                  .+... .|...|.+++|+|++++|
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  216 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  216 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence            56789999999999999999999999999999986532                  12222 477889999999999999


Q ss_pred             EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ++++.|+.|++||++... .+..+.  .|..+|.+++|+|++++++++
T Consensus       217 ~s~~~d~~i~iwd~~~~~-~~~~~~--~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         217 AWVSHDSTVCLADADKKM-AVATLA--SETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             EEEETTTEEEEEEGGGTT-EEEEEE--CSSCCEEEEEEEETTEEEEEE
T ss_pred             cccccCCcceEEeeeccc-ceeeee--cccccceeeeecCCCCEEEEE
Confidence            999999999999998874 444444  788999999999987665544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=7.5e-22  Score=198.93  Aligned_cols=195  Identities=12%  Similarity=0.168  Sum_probs=154.9

Q ss_pred             CccCCCCEEEEEEC--CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--EE
Q 008356            1 MYNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SW   76 (568)
Q Consensus         1 afSpdG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v--~~   76 (568)
                      +|++++++|++++.  ++.+.+|++.+++.+..+.+ |...|.+++|+++++.++++++.|+.|++||+...+...  ..
T Consensus       122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             EECCCCCccceeeccccceEEEEeecccccceeeee-cccccccccccccccceEEEeecccccccccccccccceeccc
Confidence            47899999988764  67899999999999999886 778899999999998778999999999999997665322  22


Q ss_pred             eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEe---cCCCEEEEEEcCCeEEEEEC
Q 008356           77 LKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI---DDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        77 l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafs---Pdg~~LasGs~DG~V~VWDl  151 (568)
                      ...|...|++++|+|+ +.+|++++.|+.|++||+++++.+..+ .|...+..+.|+   +++++|++++.|+.|+|||+
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            3467888999999995 789999999999999999999988877 466666555554   68899999999999999999


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +++ +++..+....|...+..+++.+.           .+.++++++.|+.|++||+
T Consensus       281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TTS-KCVQKWTLDKQQLGNQQVGVVAT-----------GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTT-EEEEEEECCTTCGGGCEEEEEEE-----------ETTEEEEEETTSCEEEEET
T ss_pred             CCC-CEEEEEEecCCcccCeEEEEEEC-----------CCCEEEEEECCCEEEEEEC
Confidence            987 45555654445444555554432           1235677788999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.1e-21  Score=197.70  Aligned_cols=199  Identities=14%  Similarity=0.101  Sum_probs=153.5

Q ss_pred             CccC--CCCEEEEEECCCcEEEEECCCCcee--------EEeeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECC
Q 008356            1 MYNC--KDEHLASISLSGDLILHNLASGAKA--------AELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTT   68 (568)
Q Consensus         1 afSp--dG~~LasGs~DG~V~VWDl~tg~~v--------~~l~~~h~~~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~   68 (568)
                      +|+|  ++++|++|+.||+|+|||+..++..        ..+. .+...|.+++|+++++ ++++++  .++.+++|+.+
T Consensus        70 ~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~  147 (325)
T d1pgua1          70 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWD  147 (325)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETT
T ss_pred             EEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCC-ccceeeccccceEEEEeec
Confidence            3776  5689999999999999998754422        2233 3667899999999998 455444  47789999998


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecC-CCEEEEEEc
Q 008356           69 GRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDD-DWILTAGTS  142 (568)
Q Consensus        69 t~~~~v~~l~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPd-g~~LasGs~  142 (568)
                      ++. .+..+.+|...|++++|+|++. ++++++.|+.|++||++..+....+    .+...|.+++|+|+ +.+|++++.
T Consensus       148 ~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~  226 (325)
T d1pgua1         148 SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  226 (325)
T ss_dssp             TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             ccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc
Confidence            776 4677889999999999999765 5788999999999999887765544    46778999999996 689999999


Q ss_pred             CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356          143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       143 DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~  214 (568)
                      |+.|++||+++.. .+..+.  +|...+..+.|+..         ..++.+|++++.|+.|+|||++.....
T Consensus       227 d~~i~iwd~~~~~-~~~~l~--~~~~~v~~~~~s~~---------~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         227 DRKISCFDGKSGE-FLKYIE--DDQEPVQGGIFALS---------WLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             TCCEEEEETTTCC-EEEECC--BTTBCCCSCEEEEE---------ESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccceeeeeecccc-cccccc--ccccccccceeeee---------ccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999999874 445554  57777666655521         113345666678999999999865543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=4.7e-21  Score=187.60  Aligned_cols=188  Identities=12%  Similarity=0.237  Sum_probs=146.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|++++++++++. ++.+++|+..  +.. ...  ....+.+++|+|+++ +|++|+.||.|++||+++..........|
T Consensus       106 ~~s~~g~~~~~~~-~~~i~~~~~~--~~~-~~~--~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~  178 (299)
T d1nr0a2         106 AVSADGDIAVAAC-YKHIAIYSHG--KLT-EVP--ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVH  178 (299)
T ss_dssp             EECTTSSCEEEEE-SSEEEEEETT--EEE-EEE--CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred             ccccccccccccc-cccccccccc--ccc-ccc--ccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            3678888777664 5689999953  222 222  234567899999987 89999999999999998776444455679


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ  156 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~  156 (568)
                      ...|++++|+|++++|++++.|+.|++||+.++......    .|...|.+++|+|++++|++|+.||.|+|||++....
T Consensus       179 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            999999999999999999999999999999887655332    4788999999999999999999999999999998654


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .........+...|.++.|.+ ++            +|++++.|+.|++||+
T Consensus       259 ~~~~~~~~~~~~~v~~~~~~~-~~------------~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         259 HPIIIKGAHAMSSVNSVIWLN-ET------------TIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCEEETTSSTTSCEEEEEEEE-TT------------EEEEEETTSCEEEEEC
T ss_pred             ceEEEecCCCCCcEEEEEECC-CC------------EEEEEeCCCEEEEEec
Confidence            333333333456677776644 22            4556677999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-20  Score=180.31  Aligned_cols=182  Identities=18%  Similarity=0.243  Sum_probs=133.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--------   73 (568)
                      +++||++||+|+.||.|+|||+.+++++..+++ |...|.+|+|+  ++ +|++|+.|+.|++|++......        
T Consensus        21 ~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~~--~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~   96 (293)
T d1p22a2          21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYD--ER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCE   96 (293)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECC--SS-EEEEEETTSCEEEEESSSCCEEEEECCCCS
T ss_pred             EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeecc--cc-eeeccccccccccccccccccccccccccc
Confidence            578999999999999999999999999999987 77788888874  44 8999999999999997543211        


Q ss_pred             ----------------------------------eEE----------------------------------------ecc
Q 008356           74 ----------------------------------VSW----------------------------------------LKQ   79 (568)
Q Consensus        74 ----------------------------------v~~----------------------------------------l~~   79 (568)
                                                        ...                                        +.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~  176 (293)
T d1p22a2          97 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG  176 (293)
T ss_dssp             CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcc
Confidence                                              001                                        112


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC---
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP---  155 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~---  155 (568)
                      |...|..+.+  ++.++++++.|+.|++||+++.+.+... .+...+.+  +.+++.+|++|+.||.|++||++...   
T Consensus       177 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         177 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             cccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCcccc
Confidence            2222333333  3567788888888888888887777666 34555543  55678899999999999999985421   


Q ss_pred             -----CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356          156 -----QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       156 -----~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD  207 (568)
                           .++..+.  +|.+.|++++|++  .            +|++++.|++|++||
T Consensus       253 ~~~~~~~~~~~~--~H~~~V~~v~~d~--~------------~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         253 APAGTLCLRTLV--EHSGRVFRLQFDE--F------------QIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCTTTTEEEEEC--CCSSCCCCEEECS--S------------CEEECCSSSEEEEEC
T ss_pred             ccCCceeeEEec--CCCCCEEEEEEcC--C------------EEEEEecCCEEEEeC
Confidence                 2234444  7999999999854  2            356667799999998

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.6e-20  Score=183.93  Aligned_cols=191  Identities=13%  Similarity=0.105  Sum_probs=145.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H   80 (568)
                      +++++++|++|+.||.|+|||+.+++.+.++.+ |...|.+++|++++  +|++|+.|+.|++|++........... .+
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~   95 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS   95 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCCC--EEEEEecccccccccccccccccccccccc
Confidence            567899999999999999999999999999997 77889999999853  799999999999999977653222111 12


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------------------------------------
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------------------------------------------------  112 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt------------------------------------------------  112 (568)
                      ...+..+.+.+++.++++++.|+.|++||+++                                                
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (355)
T d1nexb2          96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV  175 (355)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEE
T ss_pred             cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceee
Confidence            22334445556666677777777777776643                                                


Q ss_pred             ---------------CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 008356          113 ---------------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ  176 (568)
Q Consensus       113 ---------------~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafs  176 (568)
                                     ++.+... .+...+.++.|++++.++++++.|+.|++||+++.. .+..+.  +|...|.+++|+
T Consensus       176 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~--~h~~~v~~~~~~  252 (355)
T d1nexb2         176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQ--GHTALVGLLRLS  252 (355)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-EEEEEC--CCSSCCCEEEEC
T ss_pred             eecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc-cccccc--cccccccccccc
Confidence                           2222222 245567788999999999999999999999999874 444444  899999999987


Q ss_pred             cCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          177 RAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       177 pdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ++              ++++++.|+.|++||++...
T Consensus       253 ~~--------------~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         253 DK--------------FLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             SS--------------EEEEECTTSEEEEEETTTCC
T ss_pred             cc--------------eeeeeecccccccccccccc
Confidence            52              56667789999999987654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.3e-20  Score=180.73  Aligned_cols=193  Identities=16%  Similarity=0.187  Sum_probs=148.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--------   73 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--------   73 (568)
                      ++++|++||+|+.||.|+|||+.+++++..+.+ |...|.+++|+++   +|++|+.|+.+++|+.......        
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~   98 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTS   98 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCCC---ccccceecccccccccccccceecccccce
Confidence            567899999999999999999999999999987 6778999999864   7999999999999986432100        


Q ss_pred             -----------------------------------------------------------------------eEEeccCCC
Q 008356           74 -----------------------------------------------------------------------VSWLKQHSA   82 (568)
Q Consensus        74 -----------------------------------------------------------------------v~~l~~H~~   82 (568)
                                                                                             +..+.+|..
T Consensus        99 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  178 (342)
T d2ovrb2          99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN  178 (342)
T ss_dssp             CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred             eEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence                                                                                   011222333


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL  161 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l  161 (568)
                      .+.  .+.+++.+|++++.||.|++||++.++++..+ .|...+.+++++  +++|++++.|+.|++||+...+......
T Consensus       179 ~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~  254 (342)
T d2ovrb2         179 RVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ  254 (342)
T ss_dssp             CEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccc
Confidence            333  34456889999999999999999999888777 577888888776  4699999999999999999875332322


Q ss_pred             eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356          162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS  216 (568)
Q Consensus       162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s  216 (568)
                      ....|...+.++.++++              ++++++.|+.|++||++.......
T Consensus       255 ~~~~~~~~~~~~~~~~~--------------~~~s~s~Dg~i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         255 GPNKHQSAVTCLQFNKN--------------FVITSSDDGTVKLWDLKTGEFIRN  295 (342)
T ss_dssp             STTSCSSCEEEEEECSS--------------EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccceeeeceeecccCCC--------------eeEEEcCCCEEEEEECCCCCEEEE
Confidence            23356777887777652              566777899999999987654433

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.1e-21  Score=198.89  Aligned_cols=197  Identities=16%  Similarity=0.206  Sum_probs=148.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCc---------------eeEEee--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356            6 DEHLASISLSGDLILHNLASGA---------------KAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT   68 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~---------------~v~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~   68 (568)
                      +.++++++.||.|++|++....               ......  ..+...+.+++|+|++  +|++|+.||+|+|||+.
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~  213 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELS  213 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeec
Confidence            5688999999999999974221               011111  1234567889999986  78999999999999998


Q ss_pred             CCCce-----eEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeEe--------------ecCCCeE
Q 008356           69 GRSPK-----VSWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCI--------------TYEAPFS  126 (568)
Q Consensus        69 t~~~~-----v~~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~--------------~h~~~It  126 (568)
                      +.++.     ...+.+|...|++++|+|++++|++|+.|+   .|++||+++++.+..+              +|...|+
T Consensus       214 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  293 (393)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             ccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence            77632     223567999999999999999999999887   5999999998877655              4888999


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee----EEEEccCCCeEEEec---------------c
Q 008356          127 SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS----SLCWQRAKPVFIDET---------------T  187 (568)
Q Consensus       127 sLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~Vt----sLafspdg~~Las~s---------------~  187 (568)
                      +++|+|++++|++|+.|+.|+|||++++ +++..+.  +|.+.|.    .++|.+++..++.++               .
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~--gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN--MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG  370 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE--CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCC-CEEEEEC--CcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccc
Confidence            9999999999999999999999999987 4566666  7877665    467777776654331               0


Q ss_pred             CCCCeEEEEecCCCcEEcCC
Q 008356          188 CKAETALLGGAVGDSILMPD  207 (568)
Q Consensus       188 ssd~~~Lls~s~Dg~V~VWD  207 (568)
                      ......+++.+.|+.|++|.
T Consensus       371 ~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         371 ADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CTTSCEEEEEETTTEEEEEE
T ss_pred             cCCCCEEEEEEcCCeEEEEe
Confidence            11223455666677777764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.8e-20  Score=183.70  Aligned_cols=147  Identities=14%  Similarity=0.175  Sum_probs=132.6

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-EEeccC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v-~~l~~H   80 (568)
                      +.+.+.++++|+.|+.|++||+.+++.+..+.+ |...|.+++|+|+++ +|++|+.||.|++||+....... .....|
T Consensus       192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~  269 (340)
T d1tbga_         192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNI  269 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred             cccccceeEEeecCceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccc
Confidence            456788999999999999999999999999986 778899999999997 89999999999999998776432 223466


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD  150 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWD  150 (568)
                      ...|.+++|+|++++|++|+.||.|++||+.+++++..+ .|...|.+++|+|++.+|++|+.||.|+|||
T Consensus       270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            778999999999999999999999999999999998888 5899999999999999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.8e-20  Score=178.70  Aligned_cols=155  Identities=13%  Similarity=0.080  Sum_probs=120.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEee--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|++++||+|+.||+|+|||+.++.....+.  ..|...|.+++|++++..+|++|+.||.|++|++...........
T Consensus        18 ~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~   97 (342)
T d1yfqa_          18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred             EEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc
Confidence            489999999999999999999997665432222  137788999999998777899999999999999988775444444


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI  151 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl  151 (568)
                      .+........+.++...+++++.|+.+++||++.+......       ........+.+.+++..+++++.|+.|++||+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  177 (342)
T d1yfqa_          98 NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL  177 (342)
T ss_dssp             CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEES
T ss_pred             cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEec
Confidence            44444555666678999999999999999998765433222       12334566778888999999999999999999


Q ss_pred             CCCC
Q 008356          152 RGKP  155 (568)
Q Consensus       152 rt~~  155 (568)
                      +...
T Consensus       178 ~~~~  181 (342)
T d1yfqa_         178 PLCE  181 (342)
T ss_dssp             SCCT
T ss_pred             ccCc
Confidence            7543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=5.3e-20  Score=182.64  Aligned_cols=189  Identities=12%  Similarity=0.197  Sum_probs=153.6

Q ss_pred             ccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 008356            2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~~   79 (568)
                      ||| ||+++|+++ +|.|++||+..++.+. +  .|...|.+++|+|+|+.+++++.+++ .|++||..+++  ...+..
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~~~   83 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKFEE   83 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEECCC
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEeeC
Confidence            899 999999886 5799999998776554 3  37788999999999985445555554 79999998876  567889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc----------CCeEEE
Q 008356           80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS----------NGRVVF  148 (568)
Q Consensus        80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~----------DG~V~V  148 (568)
                      |...|.+++|+|++++|++++.++.+++||+.+++....+ .+...+.+++|+|+|++|+.+..          ++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            9999999999999999999999999999999999887776 47778999999999999987543          456999


Q ss_pred             EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      ||+.+.+    ......|...+..++|+|+|++|+.+            +.++.+++||...+.
T Consensus       164 ~d~~~~~----~~~~~~~~~~~~~~~~spdg~~l~~~------------s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         164 YDMEGRK----IFAATTENSHDYAPAFDADSKNLYYL------------SYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EETTTTE----EEECSCSSSBEEEEEECTTSCEEEEE------------ESCCCCCEECSSSSC
T ss_pred             eccccCc----eeeecccccccccccccCCCCEEEEE------------eCCCceEcccccccc
Confidence            9998862    23333677888999999987776655            457888888876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.2e-19  Score=177.56  Aligned_cols=183  Identities=17%  Similarity=0.204  Sum_probs=146.8

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA   82 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~   82 (568)
                      .+++++++++..|+.|++||+.+++.+..+.+ +...+.++.|++++. ++++++.|+.|++||+.++. .+..+.+|..
T Consensus       168 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~  244 (355)
T d1nexb2         168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGE-LMYTLQGHTA  244 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCC-EEEEECCCSS
T ss_pred             ccccceeeeecccceeeeeecccccceeeeec-cccccccccccccce-eeecccccceEEeeeccccc-cccccccccc
Confidence            45788999999999999999999998888876 556677899999998 89999999999999998887 4777899999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356           83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR  162 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~  162 (568)
                      .|.++.|+  +++|++++.||.|++||+++........+........+.+++++|++| .|+.|+|||+++++.....+ 
T Consensus       245 ~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~-  320 (355)
T d1nexb2         245 LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANI-  320 (355)
T ss_dssp             CCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCT-
T ss_pred             cccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEe-
Confidence            99999997  579999999999999999988765554444444444567777777666 58999999999875332223 


Q ss_pred             ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356          163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP  206 (568)
Q Consensus       163 ~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW  206 (568)
                       .+|.+.|.+++|+++             .++++++.||.++||
T Consensus       321 -~~~~~~V~~v~~~~~-------------~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         321 -LKDADQIWSVNFKGK-------------TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             -TTTCSEEEEEEEETT-------------EEEEEEESSSCEEEE
T ss_pred             -cCCCCCEEEEEEcCC-------------eEEEEEECCCcEEEE
Confidence             378899999999874             245556678886665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=4.7e-20  Score=189.94  Aligned_cols=198  Identities=16%  Similarity=0.180  Sum_probs=146.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCceeE-----EeeC----CCCCcEEEEEEccCC----CeEEEEEeCCCeEEEEECCCCCc
Q 008356            6 DEHLASISLSGDLILHNLASGAKAA-----ELKD----PNEQVLRVLDYSRNS----RHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         6 G~~LasGs~DG~V~VWDl~tg~~v~-----~l~~----~h~~~Vs~Lafspdg----~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      +.++++++.||.|++|++.......     ....    .+...+..++|.++.    ..++++++.||.+++||+.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            3467889999999999976433211     1111    123446677887764    24789999999999999843210


Q ss_pred             -----------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-------ecCCCeEEE
Q 008356           73 -----------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-------TYEAPFSSL  128 (568)
Q Consensus        73 -----------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-------~h~~~ItsL  128 (568)
                                       .......+...+++++|+|++ +|++|+.|++|++||+++++++..+       .|...|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                             011223456679999999987 8899999999999999998876554       378899999


Q ss_pred             EEecCCCEEEEEEcCC---eEEEEECCCCCCceEEEe-----------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 008356          129 AFIDDDWILTAGTSNG---RVVFYDIRGKPQPLTVLR-----------ACSSSEAVSSLCWQRAKPVFIDETTCKAETAL  194 (568)
Q Consensus       129 afsPdg~~LasGs~DG---~V~VWDlrt~~~~v~~l~-----------~~~h~~~VtsLafspdg~~Las~s~ssd~~~L  194 (568)
                      +|+|++++|++|+.|+   .|++||++... .+..+.           ..+|...|++++|+|++++|            
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~-~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l------------  304 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL------------  304 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEE------------
T ss_pred             ccccccceeeeecCCCCcceeeecccccce-eeeeeccccccccceeeeecccCceeeeccCCCCCee------------
Confidence            9999999999999987   49999998764 223332           13799999999999976655            


Q ss_pred             EEecCCCcEEcCCCCCCCccccc
Q 008356          195 LGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       195 ls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++++.|++|++||+........+
T Consensus       305 ~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEEEEE
Confidence            44567999999999887654443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.8e-19  Score=174.11  Aligned_cols=175  Identities=14%  Similarity=0.213  Sum_probs=132.1

Q ss_pred             CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-CeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 008356           14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD   92 (568)
Q Consensus        14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd   92 (568)
                      .++.+.+|+..+++.+..+..  ...+  .++++++. .+++++.| +.|++|++............|...|++++|+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  173 (287)
T d1pgua2          99 NDDDLLILQSFTGDIIKSVRL--NSPG--SAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS  173 (287)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC--SSCE--EEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred             ecccceeeeccceeeeeeccc--ccee--eeeeccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccC
Confidence            344455555555555555542  2222  35566776 45555554 579999997665434444567889999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecC----------CCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           93 DKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDD----------DWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        93 g~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPd----------g~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      +.+|++++.||.|++||+.+++.....  .|...|.+++|+|+          +.+|++|+.|+.|+|||++...+.+..
T Consensus       174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             ccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            999999999999999999998765443  68899999999874          568999999999999999876555555


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +.  +|...|++++|++++             .+++++.|+.|++||+
T Consensus       254 ~~--~h~~~V~~v~~~~~~-------------~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LN--AHKDGVNNLLWETPS-------------TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT--SSTTCEEEEEEEETT-------------EEEEEETTSCEEEEEE
T ss_pred             eC--CCCCCeEEEEECCCC-------------EEEEEECCCeEEEEEE
Confidence            54  899999999999853             2555667999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-18  Score=167.20  Aligned_cols=188  Identities=15%  Similarity=0.191  Sum_probs=145.3

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP   83 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~   83 (568)
                      .....+++++.|+.|++||+...+.+..+.+ |...+..+  ..++. +|++++.||.|++||++..+ .+..+..|...
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~~~~-~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~  219 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSL--QFDGI-HVVSGSLDTSIRVWDVETGN-CIHTLTGHQSL  219 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEE--EECSS-EEEEEETTSCEEEEETTTCC-EEEEECCCCSC
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcC-cccccccc--cCCCC-EEEEEeCCCeEEEeecccce-eeeEecccccc
Confidence            3556788999999999999998888888886 44444444  44565 79999999999999998877 47778899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |.++.++  +++|++++.|+.|++||+...+....+.    |...+.++.++  ++++++|+.||.|+|||+++++ .+.
T Consensus       220 v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~-~i~  294 (342)
T d2ovrb2         220 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-FIR  294 (342)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-EEE
T ss_pred             eeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC-EEE
Confidence            9998886  4699999999999999999988776662    45556666665  6799999999999999999875 333


Q ss_pred             EEee---cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          160 VLRA---CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       160 ~l~~---~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      .+..   .+|...|++++|+|++.++++++.  +      ++.+..|++||+.
T Consensus       295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~--d------Gt~~~~l~~~Df~  339 (342)
T d2ovrb2         295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSR--N------GTEETKLLVLDFD  339 (342)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEEECS--S------SSSCCEEEEEECC
T ss_pred             EEecccCCCCCCCEEEEEECCCCCEEEEEeC--C------CCCeeEEEEEeCC
Confidence            3322   357788999999997666555522  0      1113359999975

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4e-18  Score=165.79  Aligned_cols=148  Identities=14%  Similarity=0.220  Sum_probs=126.4

Q ss_pred             ccCCCCEEEEEECCC-cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASISLSG-DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs~DG-~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      ++++++.+++++.++ .|++|++...+....+...+...+.+++|+|++. +|++|+.||.|++||+.+.......+..|
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeeccccccccccccc
Confidence            567888888888775 6999999877777777776788899999999998 89999999999999998877555567789


Q ss_pred             CCCeEEEEEcCC----------CCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           81 SAPTAGISFSSD----------DKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        81 ~~~VtslafsPd----------g~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      ...|++++|+|.          +.+|++|+.|++|++||++++ +.+..+ .|...|++++|+|++ .|++++.|+.|++
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKR  283 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence            999999999874          468999999999999999874 444444 689999999999986 6889999999999


Q ss_pred             EEC
Q 008356          149 YDI  151 (568)
Q Consensus       149 WDl  151 (568)
                      ||+
T Consensus       284 W~i  286 (287)
T d1pgua2         284 WNV  286 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=9.8e-18  Score=166.06  Aligned_cols=148  Identities=16%  Similarity=0.048  Sum_probs=126.4

Q ss_pred             CccCCCCEEEEEECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|+|||++|++++.+.  .|++||+++++.. .+.. |...+.+++|+|+++ +|++++.++.+++|++.+... ...+.
T Consensus        49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~-~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~-~~~~~  124 (360)
T d1k32a3          49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE-NLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKP-TVIER  124 (360)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC-CCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE-EEEEE
T ss_pred             EECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC-CCceEEeeeeccccc-ccceeccccccccccccccce-eeeee
Confidence            4899999998876553  7999999877655 4444 677889999999998 899999999999999988773 66778


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           79 QHSAPTAGISFSSDDKIIASVG----------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs----------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                      .|...+.+++|+|++++|+.+.          .++.+++||+.+++......+...+..++|+|+|++|++++.++.+.+
T Consensus       125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEc
Confidence            8899999999999999998654          345799999999888777788888999999999999999999999999


Q ss_pred             EECC
Q 008356          149 YDIR  152 (568)
Q Consensus       149 WDlr  152 (568)
                      ||..
T Consensus       205 ~d~~  208 (360)
T d1k32a3         205 PDRV  208 (360)
T ss_dssp             ECSS
T ss_pred             cccc
Confidence            9864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.8e-16  Score=152.63  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=113.0

Q ss_pred             CEEEEEECCCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC----
Q 008356            7 EHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS----   81 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~----   81 (568)
                      ++|++++.|++|+|||+++++.+..+..+. ...+..++|+|+|+.++++++.++.|++||+.+++. +..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            589999999999999999999999887643 345678999999996667888899999999998874 44444332    


Q ss_pred             -CCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356           82 -APTAGISFSSDDKIIASVG------------LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF  148 (568)
Q Consensus        82 -~~VtslafsPdg~~LaSgs------------~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V  148 (568)
                       ..+..++|+|++++++++.            .+..+.+||..+++.+..+.....+..++|+|+|+++++++.+  +.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cce
Confidence             3456789999999998776            4567889999988888887777778888888888888777543  455


Q ss_pred             EECC
Q 008356          149 YDIR  152 (568)
Q Consensus       149 WDlr  152 (568)
                      ||..
T Consensus       159 ~d~~  162 (337)
T d1pbyb_         159 MDPE  162 (337)
T ss_dssp             EETT
T ss_pred             eeee
Confidence            6554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=4.2e-15  Score=143.25  Aligned_cols=198  Identities=13%  Similarity=0.105  Sum_probs=142.4

Q ss_pred             CccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356            1 MYNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ   79 (568)
Q Consensus         1 afSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~   79 (568)
                      +|+|||++|+ ++..++.|++||+.+++.+..+..+ . .+..+.|++++..+++++..++.+.+|+..+.+. ...+. 
T Consensus        38 a~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  113 (301)
T d1l0qa2          38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-  113 (301)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-
T ss_pred             EEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-c-cccccccccccccccccccccceeeeccccccee-eeecc-
Confidence            4899999885 5567899999999999999888853 3 4577999999997778888899999999988763 33444 


Q ss_pred             CCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeEeecC------------------------------------
Q 008356           80 HSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYE------------------------------------  122 (568)
Q Consensus        80 H~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~h~------------------------------------  122 (568)
                      +...+.++.|+|+++.++ ++..++.+.+|+..+.+.+..+.+.                                    
T Consensus       114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (301)
T d1l0qa2         114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeee
Confidence            445688999999998775 5556888999998876654443222                                    


Q ss_pred             ------CCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 008356          123 ------APFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (568)
Q Consensus       123 ------~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~  193 (568)
                            ..+..++|++++..++++..   ++.|++||+.+.+ ....+.   +...+.+++|+|+|++|           
T Consensus       194 ~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~~~~---~~~~~~~va~spdg~~l-----------  258 (301)
T d1l0qa2         194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITARIP---VGPDPAGIAVTPDGKKV-----------  258 (301)
T ss_dssp             EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEEEEE---CCSSEEEEEECTTSSEE-----------
T ss_pred             ecccccCCcceeeccccccccccccccceeeeeeeeecCCCe-EEEEEc---CCCCEEEEEEeCCCCEE-----------
Confidence                  22345566777776665543   3568888887763 223332   44567889999876554           


Q ss_pred             EEEecCCCcEEcCCCCCCCccccc
Q 008356          194 LLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       194 Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      ++++..|+.|++||+.......++
T Consensus       259 ~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCeEEEEE
Confidence            345566899999999876554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=9.1e-15  Score=140.87  Aligned_cols=268  Identities=16%  Similarity=0.144  Sum_probs=181.4

Q ss_pred             EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEE
Q 008356           10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF   89 (568)
Q Consensus        10 asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslaf   89 (568)
                      +++..|+.|.|||+++++.+..+..  ......++|+|+|+++++++..++.|++||+.+.+. +..+..+. .+..+.|
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence            3456889999999999999998884  345678999999996667888899999999988873 55566555 4789999


Q ss_pred             cCCCCEEE-EEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCCCceEEEeecCCC
Q 008356           90 SSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKPQPLTVLRACSSS  167 (568)
Q Consensus        90 sPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG-s~DG~V~VWDlrt~~~~v~~l~~~~h~  167 (568)
                      ++++.+++ ++..++.+.+||..+++....+.+...+.+++|+|++..+++. ..++.+.+|+..+.. ....+   .+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~  157 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTV---SVG  157 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE---ECC
T ss_pred             ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccc-eeeec---ccC
Confidence            99888665 4557789999999999999888888889999999999887654 467889999998873 23333   345


Q ss_pred             CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCCCCCCccCccCCCC
Q 008356          168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTG  247 (568)
Q Consensus       168 ~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~~ss~~~~s~~  247 (568)
                      ..+..+.+++++++++..           ...++.+.+|+...............                         
T Consensus       158 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  201 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVA-----------NFDSMSISVIDTVTNSVIDTVKVEAA-------------------------  201 (301)
T ss_dssp             SSEEEEEECTTSSEEEEE-----------ETTTTEEEEEETTTTEEEEEEECSSE-------------------------
T ss_pred             CCceEEEeeccccceeee-----------cccccccccccccceeeeecccccCC-------------------------
Confidence            668889999976655433           33345566665544322211111000                         


Q ss_pred             CCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCCCCCCccccCCCCccc
Q 008356          248 EETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRRF  327 (568)
Q Consensus       248 e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (568)
                         |+.......+                 ...|.-..|-   .-..+++||..++.++..++....|..+.| +++.++
T Consensus       202 ---~~~~~~~~~g-----------------~~~~v~~~~~---~~~~v~v~D~~t~~~~~~~~~~~~~~~va~-spdg~~  257 (301)
T d1l0qa2         202 ---PSGIAVNPEG-----------------TKAYVTNVDK---YFNTVSMIDTGTNKITARIPVGPDPAGIAV-TPDGKK  257 (301)
T ss_dssp             ---EEEEEECTTS-----------------SEEEEEEECS---SCCEEEEEETTTTEEEEEEECCSSEEEEEE-CTTSSE
T ss_pred             ---cceeeccccc-----------------cccccccccc---eeeeeeeeecCCCeEEEEEcCCCCEEEEEE-eCCCCE
Confidence               0000000000                 0001000010   002367899888888888888888987778 777665


Q ss_pred             cc-ccCCCceeeeeeccCC
Q 008356          328 PY-AEDGSNEHSVFDWKSS  345 (568)
Q Consensus       328 ~~-~~~~~~~~~~~~~~~~  345 (568)
                      -| ....+...-|||.+++
T Consensus       258 l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         258 VYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEEEETTTTEEEEEETTTT
T ss_pred             EEEEECCCCeEEEEECCCC
Confidence            44 4444556667887655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.9e-16  Score=149.99  Aligned_cols=170  Identities=12%  Similarity=0.054  Sum_probs=126.0

Q ss_pred             EeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--eEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 008356           31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--VSWLKQHSAPTAGISFSSD-DKIIASVGLDKKLYT  107 (568)
Q Consensus        31 ~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--v~~l~~H~~~VtslafsPd-g~~LaSgs~DGtV~I  107 (568)
                      ++..+|++.|++|+|+|+++ +|++|+.||+|+|||++.....  .....+|..+|.+++|+++ +.+|++|+.|+.|++
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            34556888999999999998 8999999999999999765432  3334479999999999985 568999999999999


Q ss_pred             EECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cC--CCCCeeEEEEccCCCeE
Q 008356          108 YDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CS--SSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       108 WDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~-~~--h~~~VtsLafspdg~~L  182 (568)
                      ||+..........  +........+.++...+++++.++.+++||++........... ..  .......+.+.+.    
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  159 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN----  159 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC----
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc----
Confidence            9999877665552  3444556667778899999999999999999865433333221 11  2223344455553    


Q ss_pred             EEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          183 IDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       183 as~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                              ...++.++.|+.|++||++....
T Consensus       160 --------~~~~~~~~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         160 --------SSRLIVGMNNSQVQWFRLPLCED  182 (342)
T ss_dssp             --------SSEEEEEESTTEEEEEESSCCTT
T ss_pred             --------CCceeeecCCCcEEEEecccCcc
Confidence                    33455667799999999976554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.68  E-value=5.6e-15  Score=153.74  Aligned_cols=174  Identities=10%  Similarity=0.148  Sum_probs=128.7

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee----EEeccCCCC
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV----SWLKQHSAP   83 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v----~~l~~H~~~   83 (568)
                      ++++...||.|+|||+.+++.+..+..+  ..+..++|+|||+ +|++++.|++|++||+.+.+...    ....+|...
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            4566778999999999999999999863  3578999999998 78899999999999998876432    122345566


Q ss_pred             eEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeeEee------------cCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 008356           84 TAGISFSSDDKIIAS-VGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTS-NGRVVFY  149 (568)
Q Consensus        84 VtslafsPdg~~LaS-gs~DGtV~IWDlrt~~~v~~~~------------h~~~ItsLafsPdg~~LasGs~-DG~V~VW  149 (568)
                      +.+++|+|||+++++ +..++.+++||..+++++..+.            +......+.+++++..++.... .+.+.++
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            677788899998754 4588999999999988776542            3344556677777776666543 4567777


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET  186 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s  186 (568)
                      +...........  ..+...+..+.|+|++++++...
T Consensus       191 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~a~  225 (426)
T d1hzua2         191 NYKDIDNLTVTS--IGAAPFLADGGWDSSHRYFMTAA  225 (426)
T ss_dssp             ECSSSSSCEEEE--EECCSSEEEEEECTTSCEEEEEE
T ss_pred             EeccccceeeEE--eccCCccEeeeECCCCcEEEeee
Confidence            766553322222  25778899999999988776653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=1.9e-15  Score=148.13  Aligned_cols=201  Identities=10%  Similarity=0.061  Sum_probs=137.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +|++++++|++++.++.|.|||+.+++.+..++.++...+.+++|+|||+.+++++..++.|++||+.+.+. +..+...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~~   81 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANLS   81 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEESC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeeccc
Confidence            689999999999999999999999999999888666666778999999997677888999999999988763 2222211


Q ss_pred             ------CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEE---------------------------------
Q 008356           81 ------SAPTAGISFSSDDKIIASVG------------LDKKLYTYD---------------------------------  109 (568)
Q Consensus        81 ------~~~VtslafsPdg~~LaSgs------------~DGtV~IWD---------------------------------  109 (568)
                            ...+..++|+||++++++++            .+..+.+||                                 
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence                  12345677777777765543            233344443                                 


Q ss_pred             --------CCCCceeeEe--------------------------------------------------------------
Q 008356          110 --------PGSRRPSSCI--------------------------------------------------------------  119 (568)
Q Consensus       110 --------lrt~~~v~~~--------------------------------------------------------------  119 (568)
                              +.+++.+..+                                                              
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                    3222221111                                                              


Q ss_pred             -------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356          120 -------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET  192 (568)
Q Consensus       120 -------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~  192 (568)
                             .+...+..+.+++++.+++... ++.|.+||+.+.+ .+..+   .+...+.+++|+|||++++++       
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~-~~~~~---~~~~~~~~va~s~DG~~l~v~-------  309 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRK-LIKAA---NLDHTYYCVAFDKKGDKLYLG-------  309 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTE-EEEEE---ECSSCCCEEEECSSSSCEEEE-------
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCc-EEEEE---cCCCCEEEEEEcCCCCEEEEE-------
Confidence                   1122233455556655555554 3679999998873 33333   345679999999987766554       


Q ss_pred             EEEEecCCCcEEcCCCCCCCccccccc
Q 008356          193 ALLGGAVGDSILMPDPLPSVTTSSVSL  219 (568)
Q Consensus       193 ~Lls~s~Dg~V~VWDlr~~~~~~s~~~  219 (568)
                           +.|+.|++||+.......+...
T Consensus       310 -----~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         310 -----GTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             -----SBSSEEEEEETTTTEEEEEEEC
T ss_pred             -----eCCCcEEEEECccCCEEEEEEC
Confidence                 4589999999988776665544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.63  E-value=2.2e-15  Score=156.91  Aligned_cols=206  Identities=13%  Similarity=0.024  Sum_probs=142.3

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeE--EeeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAA--ELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-   75 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~--~l~~--~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~-   75 (568)
                      +|+|||++|++++.||.|++||+.+++...  ++..  .|...+.+++|+|+|+.+++++..++.+++||......... 
T Consensus        68 afSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~  147 (426)
T d1hzua2          68 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV  147 (426)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe
Confidence            589999999999999999999999887543  3332  13344556677889996677777999999999765431100 


Q ss_pred             -----------------------------------------------------EeccCCCCeEEEEEcCCCCEEEEEe-C
Q 008356           76 -----------------------------------------------------WLKQHSAPTAGISFSSDDKIIASVG-L  101 (568)
Q Consensus        76 -----------------------------------------------------~l~~H~~~VtslafsPdg~~LaSgs-~  101 (568)
                                                                           ....+...+..+.|+|++++++++. .
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETT
T ss_pred             eccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeec
Confidence                                                                 0112344567889999888877665 4


Q ss_pred             CCeEEEEECCCCceee------------------------------------------------------Ee-ecCCCeE
Q 008356          102 DKKLYTYDPGSRRPSS------------------------------------------------------CI-TYEAPFS  126 (568)
Q Consensus       102 DGtV~IWDlrt~~~v~------------------------------------------------------~~-~h~~~It  126 (568)
                      +..+.++|..+++.+.                                                      .+ .|...+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~  307 (426)
T d1hzua2         228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL  307 (426)
T ss_dssp             CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCC
T ss_pred             ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCcee
Confidence            4456677665443221                                                      11 2455678


Q ss_pred             EEEEecCCCEEEE-------EEcCCeEEEEECCCCCCceEEEe------ecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 008356          127 SLAFIDDDWILTA-------GTSNGRVVFYDIRGKPQPLTVLR------ACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (568)
Q Consensus       127 sLafsPdg~~Las-------Gs~DG~V~VWDlrt~~~~v~~l~------~~~h~~~VtsLafspdg~~Las~s~ssd~~~  193 (568)
                      .++|+|++++|++       +..+++|+|||+++.+...+++.      ...|...|..++|+|||++++...+      
T Consensus       308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~------  381 (426)
T d1hzua2         308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW------  381 (426)
T ss_dssp             CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEEC------
T ss_pred             EEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEe------
Confidence            8999999999995       45678999999998765544432      1145667999999999887643211      


Q ss_pred             EEEecCCCcEEcCCCCCCCc
Q 008356          194 LLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       194 Lls~s~Dg~V~VWDlr~~~~  213 (568)
                       .+...++.|+|||.+....
T Consensus       382 -~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         382 -NGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             -CCTTSCCEEEEEETTTTEE
T ss_pred             -cCCCCCCeEEEEECCCCeE
Confidence             0123588899999887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-14  Score=135.00  Aligned_cols=158  Identities=11%  Similarity=0.190  Sum_probs=124.8

Q ss_pred             CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356           36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP  115 (568)
Q Consensus        36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~  115 (568)
                      +...|.|+.|  +++ +|++|+.||+|+|||+.+.+ .+..+.+|...|++++|  ++++|++++.|+.|++|++..+..
T Consensus        14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~-~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~   87 (293)
T d1p22a2          14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM   87 (293)
T ss_dssp             SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCc-EEEEEecCCCCEeeeec--ccceeecccccccccccccccccc
Confidence            5567887655  666 89999999999999998887 47788999999999987  578999999999999999999887


Q ss_pred             eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEE
Q 008356          116 SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALL  195 (568)
Q Consensus       116 v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Ll  195 (568)
                      .......... ...+.+....++++..++.+.+||...............|...|..+.+.+.              .++
T Consensus        88 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~  152 (293)
T d1p22a2          88 LNTLIHHCEA-VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--------------YIV  152 (293)
T ss_dssp             EEEECCCCSC-EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--------------EEE
T ss_pred             cccccccccc-cccccccccceeecccccceeEeeccccccccccccccccccccccceeccc--------------ccc
Confidence            7666443333 3445566778999999999999999987655555555578888888877653              345


Q ss_pred             EecCCCcEEcCCCCCCCcc
Q 008356          196 GGAVGDSILMPDPLPSVTT  214 (568)
Q Consensus       196 s~s~Dg~V~VWDlr~~~~~  214 (568)
                      +++.|+.|++||++.....
T Consensus       153 ~~s~d~~i~~~d~~~~~~~  171 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFV  171 (293)
T ss_dssp             EEETTSEEEEEETTTCCEE
T ss_pred             cccCCCceeeecCCCCcEE
Confidence            5667999999999876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=9.6e-15  Score=153.68  Aligned_cols=173  Identities=14%  Similarity=0.133  Sum_probs=134.2

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe---ccCCCC
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL---KQHSAP   83 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l---~~H~~~   83 (568)
                      ++++...+|+|.|||+.+++.+..+..+  ..+..++|+|||+ ++++++.|++|++||+.+.+.. ...+   ..|...
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3578889999999999999999999864  3588999999998 7889999999999999876532 2222   345555


Q ss_pred             eEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEee------------cCCCeEEEEEecCCCEEEE-EEcCCeEEEE
Q 008356           84 TAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTA-GTSNGRVVFY  149 (568)
Q Consensus        84 VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~~------------h~~~ItsLafsPdg~~Las-Gs~DG~V~VW  149 (568)
                      +.+..|+|||++| +++..++.|++||..+++++..+.            +......+.+++++..+++ ...++.|.+|
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            6666778899986 678889999999999998876542            3456778899999887654 5567999999


Q ss_pred             ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      |....+. ..+.. ..+...+..++|+|+|++++.+
T Consensus       191 d~~~~~~-~~~~~-i~~g~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         191 DYTDLNN-LKTTE-ISAERFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             ETTCSSE-EEEEE-EECCSSEEEEEECTTSCEEEEE
T ss_pred             EccCCCc-ceEEE-EcccCccccceECCCCCEEEEe
Confidence            9987643 22222 2456778999999998887665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=4e-14  Score=148.89  Aligned_cols=153  Identities=13%  Similarity=0.029  Sum_probs=118.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCce--eEEeeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAK--AAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~--~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~   76 (568)
                      +|+|||++|++++.||.|++||+.+++.  +.+++.  .+...+....|+|||+++++++..++.|++||..+.+. +..
T Consensus        68 ~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~  146 (432)
T d1qksa2          68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKI  146 (432)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEE
T ss_pred             EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eee
Confidence            4899999999999999999999987763  344442  13344555567889997778999999999999988874 333


Q ss_pred             ecc-----------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCcee--eEeecCCCeEEEEEecCCCEEEEEEc
Q 008356           77 LKQ-----------HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus        77 l~~-----------H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v--~~~~h~~~ItsLafsPdg~~LasGs~  142 (568)
                      +..           +......+.+++++..+ ++...++.|.+||..+.+..  ..+.+...+..++|+|+|+++++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             eccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            322           44567788999988775 55667899999999887644  44567778999999999998887775


Q ss_pred             -CCeEEEEECCCC
Q 008356          143 -NGRVVFYDIRGK  154 (568)
Q Consensus       143 -DG~V~VWDlrt~  154 (568)
                       ++.|.++|.+..
T Consensus       227 ~~~~v~v~d~~~~  239 (432)
T d1qksa2         227 ARNKLVVIDTKEG  239 (432)
T ss_dssp             GGTEEEEEETTTT
T ss_pred             ccceEEEeecccc
Confidence             567999999876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=4.6e-13  Score=130.30  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=101.8

Q ss_pred             eEEEEEeCCCeEEEEECCCCCceeEEecc--CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEeec------
Q 008356           51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQ--HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCITY------  121 (568)
Q Consensus        51 ~lLaTgs~DGtV~VWDl~t~~~~v~~l~~--H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~~h------  121 (568)
                      .+|++++.|++|+|||+.+.+. +..+..  +...+.+++|+||++++ ++++.++.|++||+.+++.+..+..      
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            4799999999999999998873 444543  44568899999999987 4667899999999999998877642      


Q ss_pred             CCCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          122 EAPFSSLAFIDDDWILTAGTS------------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       122 ~~~ItsLafsPdg~~LasGs~------------DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ...+..++|+|++++++++..            +..+.+||..... ....+   .+...+..++|+++|++++.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~---~~~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAF---EAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEE---ECCSSCCCEEECTTSSCEEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEec---cccCCceEEEEcCCCCEEEEE
Confidence            234568999999999988763            5778999998873 23333   355678899999998888766

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=6.9e-12  Score=122.32  Aligned_cols=176  Identities=8%  Similarity=0.012  Sum_probs=125.8

Q ss_pred             EEEEEECCCcEEEEECCCCcee---EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCC
Q 008356            8 HLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSA   82 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v---~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~--~l~~H~~   82 (568)
                      .++++..|+.|+||++.....+   ..+.  +.+.+..|+|+|||+.+++++..|+.|++|++........  ....+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            3466778999999999754332   3333  5577888999999996556666799999999976543222  2233455


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCc
Q 008356           83 PTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQP  157 (568)
Q Consensus        83 ~VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~  157 (568)
                      .+..++|+||+++|++++. ++.|.+|+..........   .+...+.++.++|++++++++.. +..|.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            6788999999999998874 678999988776544333   46667889999999998888774 567999998875433


Q ss_pred             eEEE---eecCCCCCeeEEEEccCCCeEEEe
Q 008356          158 LTVL---RACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       158 v~~l---~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ....   ...........++|++++.++...
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            2221   112344567889999987776544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.8e-12  Score=122.85  Aligned_cols=198  Identities=9%  Similarity=0.038  Sum_probs=127.1

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCCCceeEEee--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEE
Q 008356            1 MYNCKDEHLASISL-SGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~   76 (568)
                      +|+|||++|++++. |+.|++|++........+.  ......+..++|+|+|+.++++...++.|.+|+....... ...
T Consensus        43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~  122 (333)
T d1ri6a_          43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD  122 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc
Confidence            48999999976664 8999999997654332221  1133345569999999954444446789999998655422 233


Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeEe-------e----------------------------
Q 008356           77 LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCI-------T----------------------------  120 (568)
Q Consensus        77 l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~~~-------~----------------------------  120 (568)
                      ...+...+.++.++|++++++.++ .+..|.+|+..........       .                            
T Consensus       123 ~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~  202 (333)
T d1ri6a_         123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD  202 (333)
T ss_dssp             EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceE
Confidence            445667788889999888877766 4446777776442211000       0                            


Q ss_pred             -------------------------cCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEE
Q 008356          121 -------------------------YEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC  174 (568)
Q Consensus       121 -------------------------h~~~ItsLafsPdg~~LasG-s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLa  174 (568)
                                               .......++++++++++++. ..++.+.+|++..............+...+.+++
T Consensus       203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a  282 (333)
T d1ri6a_         203 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFN  282 (333)
T ss_dssp             EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEE
T ss_pred             EEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEE
Confidence                                     01123456677777766654 4567888888876654444444334556678899


Q ss_pred             EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      |+|+|++|+.+           +..++.|++|++.
T Consensus       283 ~spDGk~l~va-----------~~~~~~v~v~~id  306 (333)
T d1ri6a_         283 VDHSGKYLIAA-----------GQKSHHISVYEIV  306 (333)
T ss_dssp             ECTTSSEEEEE-----------CTTTCEEEEEEEE
T ss_pred             EeCCCCEEEEE-----------ECCCCeEEEEEEE
Confidence            99987765443           3457889998653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.38  E-value=7e-12  Score=122.16  Aligned_cols=110  Identities=10%  Similarity=0.071  Sum_probs=87.7

Q ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeEee
Q 008356           43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCIT  120 (568)
Q Consensus        43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~  120 (568)
                      ++|+++++ +|++++.|++|.+||+.+.+. +..+. .|...+.+++|+||+++++ ++..++.|++||+.+++.+..+.
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t~~~-~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCc-EEEEEcCCCEEEEEECCCCCE-EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            46788887 899999999999999998874 45554 4666789999999999875 55578999999999998887664


Q ss_pred             cC-------CCeEEEEEecCCCEEEEEEc------------CCeEEEEECCCC
Q 008356          121 YE-------APFSSLAFIDDDWILTAGTS------------NGRVVFYDIRGK  154 (568)
Q Consensus       121 h~-------~~ItsLafsPdg~~LasGs~------------DG~V~VWDlrt~  154 (568)
                      ..       ..+..++|+|||++++++..            ++.+.+||..+.
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            22       23568999999999988753            667888887765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.32  E-value=3.3e-10  Score=112.81  Aligned_cols=147  Identities=7%  Similarity=-0.069  Sum_probs=107.8

Q ss_pred             CccCCCCEEEEEE-----CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE----------eCCCeEEEE
Q 008356            1 MYNCKDEHLASIS-----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA----------GDDGTLHLW   65 (568)
Q Consensus         1 afSpdG~~LasGs-----~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg----------s~DGtV~VW   65 (568)
                      +++|||+.+++..     ..+.|.+||..+++.+..+..+..   ..++|+|||+ +|+++          ..++.|.+|
T Consensus        27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~---~~~a~SpDG~-~l~va~~~~~~~~~~~~~~~v~v~  102 (373)
T d2madh_          27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL---PNPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC---ccEEEcCCCC-EEEEEeecCCcccccccceEEEEE
Confidence            5799999987652     346799999999999998876332   2589999999 45554          346889999


Q ss_pred             ECCCCCceeEEeccCCCCe-------EEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCE
Q 008356           66 DTTGRSPKVSWLKQHSAPT-------AGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWI  136 (568)
Q Consensus        66 Dl~t~~~~v~~l~~H~~~V-------tslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~  136 (568)
                      |..+++. +..+..+....       ..+.|+++++.++...  .++.+.+|+....+....   .....++.++|+++.
T Consensus       103 D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~  178 (373)
T d2madh_         103 DPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPS  178 (373)
T ss_pred             ECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE---eccceeEEEecCCCc
Confidence            9998874 44444444332       4578888888766554  456788898887665433   345678899999875


Q ss_pred             E-EEEEcCCeEEEEECCCCC
Q 008356          137 L-TAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus       137 L-asGs~DG~V~VWDlrt~~  155 (568)
                      + ++.+.|+.+.+||.....
T Consensus       179 ~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         179 TFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             EEEEEcCCCeEEEEEcCCce
Confidence            5 578889999999998764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.32  E-value=1.6e-10  Score=115.17  Aligned_cols=202  Identities=10%  Similarity=-0.013  Sum_probs=130.9

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEeeCCC----------------------------------
Q 008356            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDPN----------------------------------   36 (568)
Q Consensus         1 afSpdG~~LasGs----------~DG~V~VWDl~tg~~v~~l~~~h----------------------------------   36 (568)
                      +|+|||++|+++.          .++.|.|||+.+++.+..+..+.                                  
T Consensus        72 a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~  151 (373)
T d2madh_          72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG  151 (373)
T ss_pred             EEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceE
Confidence            4899999998875          35789999999887654432110                                  


Q ss_pred             ------------CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc------CCCCeEEEEEcCCCCEEEE
Q 008356           37 ------------EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ------HSAPTAGISFSSDDKIIAS   98 (568)
Q Consensus        37 ------------~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~------H~~~VtslafsPdg~~LaS   98 (568)
                                  .....++.++++++.++++.+.|+.+.+||....... .....      +......+.+.+++ .++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  229 (373)
T d2madh_         152 LVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG-AGLVGAMLTAAQNLLTQPAQANKSG-RIVW  229 (373)
T ss_pred             EeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee-EEEeeeccccCccceeeeEEECCCc-eEEE
Confidence                        1112346677787767788888999999998776532 22211      12223344555544 4556


Q ss_pred             EeCCCeEEEEECCCCceeeEee-------------cCCCeEEEEEecCCCEE----------EEEEcCCeEEEEECCCCC
Q 008356           99 VGLDKKLYTYDPGSRRPSSCIT-------------YEAPFSSLAFIDDDWIL----------TAGTSNGRVVFYDIRGKP  155 (568)
Q Consensus        99 gs~DGtV~IWDlrt~~~v~~~~-------------h~~~ItsLafsPdg~~L----------asGs~DG~V~VWDlrt~~  155 (568)
                      .+.++.+++|+...........             .......+++++++..+          +....++.|.+||..+.+
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~  309 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ  309 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc
Confidence            6778899999988765432221             11233445666665544          445567789999998874


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                       .+..+   .+...+..++|+|||+.+          ++++++.|+.|++||+.......++.
T Consensus       310 -~~~~~---~~~~~~~~~a~spDG~~~----------l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         310 -TSSQI---SLGHDVDAISVAQDGGPD----------LYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             -EEEEe---cCCCCeeEEEECCCCCEE----------EEEEeCCCCeEEEEECCCCCEEEEEC
Confidence             23333   466789999999987543          33455679999999998877655543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.30  E-value=2.4e-11  Score=119.96  Aligned_cols=201  Identities=10%  Similarity=0.056  Sum_probs=134.9

Q ss_pred             CccCCCCEEEEE----------ECCCcEEEEECCCCceeEEeeCCCC------CcEEEEEEccCCCeEEEEE--eCCCeE
Q 008356            1 MYNCKDEHLASI----------SLSGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTA--GDDGTL   62 (568)
Q Consensus         1 afSpdG~~LasG----------s~DG~V~VWDl~tg~~v~~l~~~h~------~~Vs~Lafspdg~~lLaTg--s~DGtV   62 (568)
                      +|+|||++|++.          ..|+.|++||+.+++.+..+..+..      .....++|+++++. ++.+  ..+..+
T Consensus        53 a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-~~v~~~~~~~~~  131 (355)
T d2bbkh_          53 VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT-LLFYQFSPAPAV  131 (355)
T ss_dssp             EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE-EEEEECSSSCEE
T ss_pred             EEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCe-eEEecCCCCcee
Confidence            589999988764          3478999999999998887654221      12245789999984 4444  346789


Q ss_pred             EEEECCCCCceeEEec---------------------------------------------cCCCCeEEEEEcCCCCEEE
Q 008356           63 HLWDTTGRSPKVSWLK---------------------------------------------QHSAPTAGISFSSDDKIIA   97 (568)
Q Consensus        63 ~VWDl~t~~~~v~~l~---------------------------------------------~H~~~VtslafsPdg~~La   97 (568)
                      .+||..+.+.. ..+.                                             .+...+....+.+++..++
T Consensus       132 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (355)
T d2bbkh_         132 GVVDLEGKAFK-RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  210 (355)
T ss_dssp             EEEETTTTEEE-EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eeeecCCCcEe-eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEE
Confidence            99998765421 1111                                             0111233445666777888


Q ss_pred             EEeCCCeEEEEECCCCceeeEe--e-----------cCCCeEEEEEecCCCEEEEEEcC----------CeEEEEECCCC
Q 008356           98 SVGLDKKLYTYDPGSRRPSSCI--T-----------YEAPFSSLAFIDDDWILTAGTSN----------GRVVFYDIRGK  154 (568)
Q Consensus        98 Sgs~DGtV~IWDlrt~~~v~~~--~-----------h~~~ItsLafsPdg~~LasGs~D----------G~V~VWDlrt~  154 (568)
                      .++.++.+++|++..++.....  .           .......+++++++..++....+          ..|.+||+.+.
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            8899999999999877543221  0           11234568899999988876554          36999999987


Q ss_pred             CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356          155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV  217 (568)
Q Consensus       155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~  217 (568)
                      + .+..+.   +...+.+++|+|+|+.+          +++++..|+.|++||+.......++
T Consensus       291 ~-~~~~~~---~~~~~~~~a~spDG~~~----------l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         291 E-RLAKFE---MGHEIDSINVSQDEKPL----------LYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             C-EEEEEE---EEEEECEEEECCSSSCE----------EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             c-EEEEec---CCCCEEEEEEcCCCCeE----------EEEEECCCCEEEEEECCCCCEEEEE
Confidence            4 333333   34568899999986532          3344566899999999877654443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=4.7e-09  Score=103.07  Aligned_cols=186  Identities=6%  Similarity=-0.062  Sum_probs=118.1

Q ss_pred             CccCCCCEEEEEE-----CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEE---------EeCCCeEEEEE
Q 008356            1 MYNCKDEHLASIS-----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVT---------AGDDGTLHLWD   66 (568)
Q Consensus         1 afSpdG~~LasGs-----~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaT---------gs~DGtV~VWD   66 (568)
                      +.+||++++++..     .++.|.+||..+++.+..+..+..   ..++|+|+|+.++++         +..|+.|++||
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~---~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC---CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            3579999988764     345799999999999988876322   258999999955443         34578999999


Q ss_pred             CCCCCceeEEeccC-------CCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEeecCCC--------eEEEE
Q 008356           67 TTGRSPKVSWLKQH-------SAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCITYEAP--------FSSLA  129 (568)
Q Consensus        67 l~t~~~~v~~l~~H-------~~~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~~h~~~--------ItsLa  129 (568)
                      ..+.+. +..+..+       ......++|++++++++.+.  .+..+.+||..+++.+..+.....        ...+.
T Consensus        85 ~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            988874 3333322       22345689999999888775  456899999999988877643332        22344


Q ss_pred             EecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          130 FIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       130 fsPdg~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      +++++..++... .++.+.+++.....        ..+...+....+.+++..            ++..+.++.+++|++
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~~  223 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFH--------PEDEFLINHPAYSQKAGR------------LVWPTYTGKIHQIDL  223 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCS--------CTTSCBCSCCEEETTTTE------------EEEEBTTSEEEEEEC
T ss_pred             EcCCCCEEEEEecCCCeEEEEeccccc--------ceecceeeeccccCCCCe------------EEEecCCCeEEEEec
Confidence            555554444332 23334444433321        123334444555554333            334455778888876


Q ss_pred             CC
Q 008356          209 LP  210 (568)
Q Consensus       209 r~  210 (568)
                      ..
T Consensus       224 ~~  225 (355)
T d2bbkh_         224 SS  225 (355)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=4.3e-10  Score=113.28  Aligned_cols=203  Identities=12%  Similarity=0.005  Sum_probs=122.7

Q ss_pred             CccCCCCEEEEEE----------CCCcEEEEECCCCceeEEeeCCCCC------cEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356            1 MYNCKDEHLASIS----------LSGDLILHNLASGAKAAELKDPNEQ------VLRVLDYSRNSRHLLVTAGDDGTLHL   64 (568)
Q Consensus         1 afSpdG~~LasGs----------~DG~V~VWDl~tg~~v~~l~~~h~~------~Vs~Lafspdg~~lLaTgs~DGtV~V   64 (568)
                      +|+|||++|++.+          .|+.|.+||..+++.+..+..+...      ....++|+|||++++++...++.+.+
T Consensus        71 a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~  150 (368)
T d1mdah_          71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG  150 (368)
T ss_dssp             EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEE
T ss_pred             eECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            4789999998764          3678999999999988877643221      12348999999966655567899999


Q ss_pred             EECCCCCceeEEeccCCC-------CeEEEEEcCCCCEEEEEe------------------------------------C
Q 008356           65 WDTTGRSPKVSWLKQHSA-------PTAGISFSSDDKIIASVG------------------------------------L  101 (568)
Q Consensus        65 WDl~t~~~~v~~l~~H~~-------~VtslafsPdg~~LaSgs------------------------------------~  101 (568)
                      ||+.+.+. ...+..+..       ....+.+++|+..++...                                    .
T Consensus       151 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         151 LSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EECCCCcE-eEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            99987763 222222221       112222333333222211                                    1


Q ss_pred             CCeEEEEECCCCceeeEee-------------cCCCeEEEEEecCCCEEEEEEcC---------CeEEEEECCCCCCceE
Q 008356          102 DKKLYTYDPGSRRPSSCIT-------------YEAPFSSLAFIDDDWILTAGTSN---------GRVVFYDIRGKPQPLT  159 (568)
Q Consensus       102 DGtV~IWDlrt~~~v~~~~-------------h~~~ItsLafsPdg~~LasGs~D---------G~V~VWDlrt~~~~v~  159 (568)
                      .+.++++++..+.......             .......+++++++..+++...+         ..|.+||..+.+ .+.
T Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~  308 (368)
T d1mdah_         230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSG  308 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEE
T ss_pred             CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc-EeE
Confidence            2233444443333221110             01123357888888877665432         258999999874 233


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS  218 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~  218 (568)
                      .+   .+...+..++|+|||+.+          +++++..|+.|++||+.......++.
T Consensus       309 ~~---~~~~~~~~~a~spDG~~~----------ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         309 PI---SNGHDSDAIIAAQDGASD----------NYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CC---EEEEEECEEEECCSSSCE----------EEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             Ee---cCCCceeEEEECCCCCEE----------EEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            22   344678899999986532          34455668999999998776555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=6.7e-07  Score=84.59  Aligned_cols=178  Identities=15%  Similarity=0.166  Sum_probs=118.1

Q ss_pred             CccCCCCEEEEEECCC---cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356            1 MYNCKDEHLASISLSG---DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL   77 (568)
Q Consensus         1 afSpdG~~LasGs~DG---~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l   77 (568)
                      +|||||+.||......   .+.+.+...+.......  +........|+|+++.+++....++...++............
T Consensus        45 ~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~  122 (269)
T d2hqsa1          45 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  122 (269)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred             EECCCCCEEEEEEeeccCcceeeeecccCceeEEee--eecccccceecCCCCeeeEeeecCCccceeecccccccceee
Confidence            4999999999775543   47777776665543333  556677889999999766666666665555543333234444


Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC-e--EEEEEC
Q 008356           78 KQHSAPTAGISFSSDDKIIASVG-LDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-R--VVFYDI  151 (568)
Q Consensus        78 ~~H~~~VtslafsPdg~~LaSgs-~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG-~--V~VWDl  151 (568)
                      ..+........+++++..++... .++  .|.++++..+................|+|+++.++....++ .  |.++|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         123 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             eeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeec
Confidence            55555566677888766655444 444  57777777766555555666778889999999988876544 3  444555


Q ss_pred             CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ...  ....+   .+........|+|||++|+..
T Consensus       203 ~~~--~~~~~---~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         203 ATG--GVQVL---SSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             TTC--CEEEC---CCSSSCEEEEECTTSSEEEEE
T ss_pred             ccc--cceEe---ecCccccceEECCCCCEEEEE
Confidence            444  22333   355667888999999988765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=8.3e-09  Score=107.18  Aligned_cols=143  Identities=13%  Similarity=0.130  Sum_probs=108.3

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC----CCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP----NEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTT   68 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~----h~~~Vs~Lafspdg~~lLaTgs---------~DGtV~VWDl~   68 (568)
                      |.++++++.  ..++.|.+||+.+++....+..+    +...|.++.|+||++. |+.++         .++.+.|||+.
T Consensus        24 W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~-i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          24 WISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF-ILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             ECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             eCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCE-EEEEECCcceeeeccCceEEEEECC
Confidence            677887765  35788999999999887666542    2356889999999994 55443         25678999999


Q ss_pred             CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-------------------cCCCeEEEE
Q 008356           69 GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-------------------YEAPFSSLA  129 (568)
Q Consensus        69 t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-------------------h~~~ItsLa  129 (568)
                      +++  ...+..|...+..+.|+|||++|+... ++.+++|+..+++..+...                   ..+....+.
T Consensus       101 ~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         101 KRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCc--ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            886  566888999999999999999999865 6789999999887665431                   122345688


Q ss_pred             EecCCCEEEEEEcCCe-EEEEE
Q 008356          130 FIDDDWILTAGTSNGR-VVFYD  150 (568)
Q Consensus       130 fsPdg~~LasGs~DG~-V~VWD  150 (568)
                      |+|||++|+....|.. |..|+
T Consensus       178 wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         178 WSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEE
T ss_pred             ECCCCCccceeEecCCcCceEE
Confidence            9999999999876533 44443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.79  E-value=9.9e-08  Score=100.24  Aligned_cols=189  Identities=8%  Similarity=-0.046  Sum_probs=130.3

Q ss_pred             EEEEECCCcEEEEECCCCceeEEeeCC-----------------------------CCCcEEEEEEccCCCeEEEEEeCC
Q 008356            9 LASISLSGDLILHNLASGAKAAELKDP-----------------------------NEQVLRVLDYSRNSRHLLVTAGDD   59 (568)
Q Consensus         9 LasGs~DG~V~VWDl~tg~~v~~l~~~-----------------------------h~~~Vs~Lafspdg~~lLaTgs~D   59 (568)
                      +++++.+|.|.||++.+++.++.+...                             |...+....+.|||++++++...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            567788999999999999887775321                             112344455678998666777788


Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC--EEEEEeCCC-----------------eEEEEECCCCceeeEee
Q 008356           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK--IIASVGLDK-----------------KLYTYDPGSRRPSSCIT  120 (568)
Q Consensus        60 GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~--~LaSgs~DG-----------------tV~IWDlrt~~~v~~~~  120 (568)
                      ..|.++|+++.+........+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            99999999988743333345677899999999888  444444432                 24568888888877777


Q ss_pred             cCCCeEEEEEecCCCEEEEEEcCC-----------------------------------------eEEEEECCCCCCceE
Q 008356          121 YEAPFSSLAFIDDDWILTAGTSNG-----------------------------------------RVVFYDIRGKPQPLT  159 (568)
Q Consensus       121 h~~~ItsLafsPdg~~LasGs~DG-----------------------------------------~V~VWDlrt~~~~v~  159 (568)
                      ..+....++|+|+|+++++.+.+.                                         .+.|++.... ....
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~-~v~~  252 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES-EFTR  252 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC-SSEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC-ceEE
Confidence            777889999999999998887542                                         2233322222 2233


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV  212 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~  212 (568)
                      .+.   -......+.++|+|++++           +++..+++|.|||+..+.
T Consensus       253 ~IP---vgksPhGv~vSPDGkyl~-----------~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         253 YIP---VPKNPHGLNTSPDGKYFI-----------ANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             EEC---CBSSCCCEEECTTSCEEE-----------EECTTSSBEEEEEGGGHH
T ss_pred             EEe---CCCCccCceECCCCCEEE-----------EeCCcCCcEEEEEeehhh
Confidence            332   223456788888877653           445669999999987533

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.79  E-value=1.2e-07  Score=94.90  Aligned_cols=178  Identities=5%  Similarity=-0.034  Sum_probs=113.9

Q ss_pred             ccCCCCEEEE---EECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE---------eCCCeEEEEEC
Q 008356            2 YNCKDEHLAS---ISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA---------GDDGTLHLWDT   67 (568)
Q Consensus         2 fSpdG~~Las---Gs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg---------s~DGtV~VWDl   67 (568)
                      ..++++....   ...+|  .|.+||..+++.+..+..+...   .++|+|+++.+.+..         ..|+.|.+||.
T Consensus        27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~---~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC---cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            3466765332   23344  4777799999998888764432   478999998544332         34788999999


Q ss_pred             CCCCceeEEeccCC-------CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEE
Q 008356           68 TGRSPKVSWLKQHS-------APTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA  139 (568)
Q Consensus        68 ~t~~~~v~~l~~H~-------~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~Las  139 (568)
                      .+.+. +..+..+.       .....++|+||+++|+++. .++.|.+||+.+++.+..+.......  .+......++.
T Consensus       104 ~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~  180 (368)
T d1mdah_         104 VTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYL  180 (368)
T ss_dssp             TTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEEC
T ss_pred             CCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--EccCCCceEEE
Confidence            88874 33333222       2234689999999998776 57899999999999888774332221  11123456666


Q ss_pred             EEcCCeEEEEECCCCCCceEEEe---ecCCCCCeeEEEEccCCCeEEEe
Q 008356          140 GTSNGRVVFYDIRGKPQPLTVLR---ACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       140 Gs~DG~V~VWDlrt~~~~v~~l~---~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .+.||.+.+|++...........   ...+...+..+.+.+++..+...
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            77888888888876543222211   11344455667777776665544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.73  E-value=2.6e-08  Score=103.30  Aligned_cols=138  Identities=12%  Similarity=0.078  Sum_probs=104.6

Q ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE----EeccCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 008356           42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS----WLKQHSAPTAGISFSSDDKIIASVGL---------DKKLYTY  108 (568)
Q Consensus        42 ~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~----~l~~H~~~VtslafsPdg~~LaSgs~---------DGtV~IW  108 (568)
                      .+.|.++++ +++  .+|+.+.+||+.+++....    .+..|...|.++.|+||+++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHE-YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSE-EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            378999886 554  4688899999998874321    23345678999999999999998753         5678999


Q ss_pred             ECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC-----------------CCCCee
Q 008356          109 DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS-----------------SSEAVS  171 (568)
Q Consensus       109 Dlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~-----------------h~~~Vt  171 (568)
                      |+.+++......+...+..+.|+|||++||.. .++.+++|+..++.. .+... .+                 ..+...
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~-~~~t~-~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-YRITW-TGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-EECCS-CCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCce-eeeee-ccCCCcccccccceeeeeeecCCcc
Confidence            99999877666788899999999999999986 567899999987643 22211 11                 223346


Q ss_pred             EEEEccCCCeEEEe
Q 008356          172 SLCWQRAKPVFIDE  185 (568)
Q Consensus       172 sLafspdg~~Las~  185 (568)
                      .+.|+|||++|+..
T Consensus       175 ~~~wSPDGk~ia~~  188 (470)
T d2bgra1         175 ALWWSPNGTFLAYA  188 (470)
T ss_dssp             CEEECTTSSEEEEE
T ss_pred             ccEECCCCCcccee
Confidence            68899999988776

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.68  E-value=1.4e-07  Score=99.05  Aligned_cols=200  Identities=11%  Similarity=-0.053  Sum_probs=126.4

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe------------------E
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT------------------L   62 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt------------------V   62 (568)
                      ++|||++|++.. .++.|.++|+.+++....+...+....+.++|+|+++..++++..+..                  +
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            468999987765 578999999999998887776667788999999999854444433333                  3


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC----------------------------------------
Q 008356           63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD----------------------------------------  102 (568)
Q Consensus        63 ~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D----------------------------------------  102 (568)
                      ..+|..+.+.. ..+.. ......++|+|+++++++.+.+                                        
T Consensus       159 ~~iD~~t~~v~-~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         159 TAIDAETMDVA-WQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEEETTTCSEE-EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EeecCccceee-EEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            44777666532 22222 2357889999999998877643                                        


Q ss_pred             -CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEE-EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 008356          103 -KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP  180 (568)
Q Consensus       103 -GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~Las-Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~  180 (568)
                       +.+.+++....+.+..+........+.++|||+++++ +..+++|.|||++...+.   +.  ++.....++...++..
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~---~~--~~~~~~~~~~~~~~~g  311 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL---FE--DKIELRDTIVAEPELG  311 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH---TT--TSSCGGGGEEECCBCC
T ss_pred             CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH---hh--ccCCcceEEEeecccc
Confidence             2334444444455556655555678999999998765 567999999998753210   11  1111222222222211


Q ss_pred             eE--EEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          181 VF--IDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       181 ~L--as~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +-  -+. -..++..+.+...|..|..|++.
T Consensus       312 lgplh~~-fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         312 LGPLHTT-FDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SCEEEEE-ECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cCcccce-ecCCceEEEcccccceEEEeccc
Confidence            10  011 11234556666679999999873

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.49  E-value=6e-06  Score=80.81  Aligned_cols=179  Identities=10%  Similarity=0.098  Sum_probs=120.5

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~--   78 (568)
                      ++.|||+++++...+++|+.|+.. ++......  ....+.+++|.++|+ ++++...++.+.+|+..........+.  
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~--~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT--VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL  109 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-CCEEEEEE--CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc--CCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceeecccc
Confidence            468999999888889999888854 44333232  446788999999998 888888888888888755443333332  


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-----------cCCCeEEEEEecCCCEEEEEEcCCeEE
Q 008356           79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----------YEAPFSSLAFIDDDWILTAGTSNGRVV  147 (568)
Q Consensus        79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-----------h~~~ItsLafsPdg~~LasGs~DG~V~  147 (568)
                      ......+.+++.++++++++-..++.+..+|...+.......           .......+.+.. +.++++...++.|.
T Consensus       110 ~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLL  188 (302)
T ss_dssp             TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEE
T ss_pred             CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEE
Confidence            345668999999999999988899999999988765432221           112355666653 34555566788999


Q ss_pred             EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .+++........ .....+......++|+++|.+.++.
T Consensus       189 ~~~~~~~~~~~~-~~~~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         189 RIPVDSTDKPGE-PEIFVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEEBCTTSCBCC-CEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             eccccccccccc-cccccCCCCCcceEECCCCCEEEEE
Confidence            999876432111 1111123445678888877654443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=1.6e-05  Score=76.87  Aligned_cols=179  Identities=11%  Similarity=0.094  Sum_probs=124.1

Q ss_pred             CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE--eccCCCCeEEEEEcCC
Q 008356           15 SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW--LKQHSAPTAGISFSSD   92 (568)
Q Consensus        15 DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~--l~~H~~~VtslafsPd   92 (568)
                      ++.|.+++. .++....+..........+++.+++. ++++....+.+.+++.+...  +..  ...+......+++.++
T Consensus        92 ~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~--~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          92 THQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             GCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEECTTTCSSEEEEEECSS
T ss_pred             ccccccccc-cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce--eecccccccccccceeeeccc
Confidence            345656654 56666666544455667889999887 67776777888888876543  333  3456677899999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCceEEEeecCCCC
Q 008356           93 DKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        93 g~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      ++.+++....+.|++||.. ++.+..+.   .......|++.++|+++++-.. ++.|.+|+....  .+..+.......
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~--~~~~~~~~~~~~  244 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--LISALESKVKHA  244 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC--EEEEEEESSCCS
T ss_pred             eeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC--EEEEEeCCCCCC
Confidence            9988888889999999975 55566664   3345789999999998777544 457999986543  334444333344


Q ss_pred             CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      ....|++.++|.            ++++. .+..|++|.....++
T Consensus       245 ~p~~vav~~dG~------------l~V~~-~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         245 QCFDVALMDDGS------------VVLAS-KDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEEEETTTE------------EEEEE-TTTEEEEEECSCCCC
T ss_pred             CEeEEEEeCCCc------------EEEEe-CCCeEEEEEeeeecC
Confidence            678888888653            33333 478899998766654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.45  E-value=1.3e-05  Score=80.88  Aligned_cols=163  Identities=5%  Similarity=-0.080  Sum_probs=103.6

Q ss_pred             CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--EE--eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 008356           37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SW--LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG  111 (568)
Q Consensus        37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v--~~--l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlr  111 (568)
                      ...++++.|+|+|++++++......|.+|+........  ..  ..........++|+|+++++++.. .+++|.+||+.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            34578899999999555555556789999875443221  11  222356789999999999885555 67899999987


Q ss_pred             CCceeeEe--e------------------cCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCCCceEE---Ee
Q 008356          112 SRRPSSCI--T------------------YEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLTV---LR  162 (568)
Q Consensus       112 t~~~v~~~--~------------------h~~~ItsLafsPdg~~LasGs~------DG~V~VWDlrt~~~~v~~---l~  162 (568)
                      .++.....  .                  .......+.++|+|++|+++..      .+.|..|++.........   ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65432211  1                  1112567899999999988753      234778887754322211   12


Q ss_pred             ecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356          163 ACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLP  210 (568)
Q Consensus       163 ~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~  210 (568)
                      .........+++++| +|++|+.+           ...++.|.+|++..
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va-----------~~~s~~v~v~~~~~  341 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAIT-----------DDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEE-----------CSSSCEEEEEEEET
T ss_pred             EEcCCCCccEEEecCCCCCEEEEE-----------eCCCCeEEEEEEeC
Confidence            122345567788987 56655443           44578888887643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=8e-06  Score=78.21  Aligned_cols=176  Identities=8%  Similarity=0.033  Sum_probs=116.2

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      ++++|+++++....+.|++++-.+...+....  ......+|++.++++ ++++-..+..+.+++........ ......
T Consensus        64 v~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~--~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~  139 (260)
T d1rwia_          64 VDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD--GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTV-LPFTGL  139 (260)
T ss_dssp             ECTTCCEEEEETTTEEEEECTTCSCCEECCCC--SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEE-CCCCSC
T ss_pred             EcCCCCEEEeeeeeceeeeeeeccceeeeeee--eeeecccccccccce-eEeeccccccccccccccceeee-eeeccc
Confidence            45677766655555555555544443332222  234568899999887 66666667778888776654222 122223


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356           82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~  160 (568)
                      ....++++.++++++++...++.|..+|.......... ..-.....|++.++|+++++....+.|..++......  ..
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~--~~  217 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TV  217 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC--EE
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE--EE
Confidence            45688999999998888888899999998765443322 4456678999999999888888889999998766532  22


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEE
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      +. ...-.....|+++++|.++++
T Consensus       218 ~~-~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         218 LP-FTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             CC-CCSCCCEEEEEECTTCCEEEE
T ss_pred             Ec-cCCCCCeEEEEEeCCCCEEEE
Confidence            22 123345788999987655444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.38  E-value=1.7e-05  Score=78.62  Aligned_cols=189  Identities=16%  Similarity=0.183  Sum_probs=120.7

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCC----CcEEEEEEccCCCeEEEEEeC---------------CCeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNE----QVLRVLDYSRNSRHLLVTAGD---------------DGTL   62 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~----~~Vs~Lafspdg~~lLaTgs~---------------DGtV   62 (568)
                      |.++|++|+++...+.|..++...+.. ..+.....    ...+++++.++|. +.++-..               +|.|
T Consensus        78 ~~~dg~~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_          78 CDRDANQLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             ECSSSSEEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EeCCCCEEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceE
Confidence            678888888888777788888754432 22221111    1357789999997 5555321               2345


Q ss_pred             EEEECCCCCceeEEeccCCCCeEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCceee---Ee-e----cCCCeEEEE
Q 008356           63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-----IIASVGLDKKLYTYDPGSRRPSS---CI-T----YEAPFSSLA  129 (568)
Q Consensus        63 ~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-----~LaSgs~DGtV~IWDlrt~~~v~---~~-~----h~~~ItsLa  129 (568)
                      +.++.+..   ...+.......+.++|+++++     ++++-...+.|..||+.....+.   .+ .    .......++
T Consensus       156 ~~~~~dg~---~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         156 YCFTTDGQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEECTTSC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             EEEeecCc---eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            44444332   222333344568899998664     44555678899999876433221   11 1    223467899


Q ss_pred             EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +..+|++.++....+.|.+||.+... ....+.  .....+++++|.++++           .++++.+..+.|...|+.
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~-~~~~i~--~p~~~~t~~afg~d~~-----------~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIR--CPFEKPSNLHFKPQTK-----------TIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBS-CSEEEE--CSSSCEEEEEECTTSS-----------EEEEEETTTTEEEEEECS
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCE-EEEEEE--CCCCCEEEEEEeCCCC-----------EEEEEECCCCcEEEEECC
Confidence            99999998888889999999998763 344444  3446788999988643           345555667877777753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.32  E-value=2.2e-05  Score=79.16  Aligned_cols=154  Identities=8%  Similarity=0.041  Sum_probs=101.8

Q ss_pred             CccCCCCEEEEEEC-CCcEEEEECCC-Ccee--EEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 008356            1 MYNCKDEHLASISL-SGDLILHNLAS-GAKA--AELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-   74 (568)
Q Consensus         1 afSpdG~~LasGs~-DG~V~VWDl~t-g~~v--~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v-   74 (568)
                      +|+|||++|++++. ...|.+|+... +...  ..+.. ......+.+.|+|+++.++++...+++|.+|+++...... 
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~  230 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEE
Confidence            48999999888865 45788887653 3322  22222 2345667899999999666667778999999997654221 


Q ss_pred             EEec-----------------cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceee---Ee----ecCCC
Q 008356           75 SWLK-----------------QHSAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSS---CI----TYEAP  124 (568)
Q Consensus        75 ~~l~-----------------~H~~~VtslafsPdg~~LaSgs~------DGtV~IWDlrt~~~v~---~~----~h~~~  124 (568)
                      ....                 .+......+.++|++++|+++..      ...|..|++.....+.   .+    .....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~  310 (365)
T d1jofa_         231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred             EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCC
Confidence            1100                 11223567899999999987742      2247777776532221   11    23456


Q ss_pred             eEEEEEec-CCCEEEEEE-cCCeEEEEECCCC
Q 008356          125 FSSLAFID-DDWILTAGT-SNGRVVFYDIRGK  154 (568)
Q Consensus       125 ItsLafsP-dg~~LasGs-~DG~V~VWDlrt~  154 (568)
                      ...++++| +|++|+++. .++.|.+|+++..
T Consensus       311 p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            77899998 789887765 6789999988654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.26  E-value=0.00012  Score=72.25  Aligned_cols=193  Identities=11%  Similarity=0.123  Sum_probs=117.7

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC----CCeEEEEECCCCCceeEE
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----DGTLHLWDTTGRSPKVSW   76 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~----DGtV~VWDl~t~~~~v~~   76 (568)
                      +|.++|++.++--.++.|+.|+...++....+.. .......|++.++|+ ++++...    .+.|...+..+... ...
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~~-~~~  122 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL-QDI  122 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC-EEE
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCcee-eee
Confidence            3678888666666788898888876655544443 444568899999997 6665433    23344445444442 222


Q ss_pred             ec--cCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE-EcCCeEE
Q 008356           77 LK--QHSAPTAGISFSSDDKIIASVGL------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRVV  147 (568)
Q Consensus        77 l~--~H~~~VtslafsPdg~~LaSgs~------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG-s~DG~V~  147 (568)
                      ..  .-...++.+++.++|++.++...      .+.+..++...+........-...+.++|+|+++.|+++ ...++|.
T Consensus       123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceE
Confidence            21  12345789999999997766432      234666665544433333444456889999999876555 5678999


Q ss_pred             EEECCCCCCceEEE-----eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          148 FYDIRGKPQPLTVL-----RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       148 VWDlrt~~~~v~~l-----~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .||++.........     ...........++++.+|++.++.            ...+.|.+||.
T Consensus       203 ~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~------------~~~g~V~~~~p  256 (319)
T d2dg1a1         203 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM------------YGQGRVLVFNK  256 (319)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE------------ETTTEEEEECT
T ss_pred             EEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE------------cCCCEEEEECC
Confidence            99987543322211     111222335678888766544433            34677777774

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=0.00023  Score=66.49  Aligned_cols=163  Identities=13%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356           17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK   94 (568)
Q Consensus        17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~   94 (568)
                      .|+|.|....+......  ....+...+|+|||+.+.++...++.  +.+.+..+..  ...+..+...+....|+|+++
T Consensus        20 ~l~i~d~dG~~~~~l~~--~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEec--CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCC
Confidence            58888875444333333  34556778999999976666665554  5555665555  556677888899999999999


Q ss_pred             EEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE-cCC--eEEEEECCCCCCceEEEeecCCCC
Q 008356           95 IIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT-SNG--RVVFYDIRGKPQPLTVLRACSSSE  168 (568)
Q Consensus        95 ~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs-~DG--~V~VWDlrt~~~~v~~l~~~~h~~  168 (568)
                      .++.... ++  .+..+.....................+.+++..++... .++  .|.++++....  ...+.  .+..
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~--~~~~  171 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRIT--WEGS  171 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECC--CSSS
T ss_pred             eeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc--ceeee--cccc
Confidence            8887664 32  33444444444444444555566667788777665544 444  45666666543  23332  4556


Q ss_pred             CeeEEEEccCCCeEEEecc
Q 008356          169 AVSSLCWQRAKPVFIDETT  187 (568)
Q Consensus       169 ~VtsLafspdg~~Las~s~  187 (568)
                      ......|+|+++.++....
T Consensus       172 ~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEE
T ss_pred             cccccccccccceeEEEee
Confidence            6778899999888776533

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=9.8e-05  Score=70.31  Aligned_cols=177  Identities=14%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      +.++|+..++.. ..+.|..++....... .+..........+++++++. ++++...++.+++++-.+..  .......
T Consensus        21 vd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~--~~~~~~~   96 (260)
T d1rwia_          21 VDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ--TVLPFDG   96 (260)
T ss_dssp             ECTTCCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC--EECCCCS
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccce--eeeeeee
Confidence            456777555443 4456666654332222 12111122345688999986 66666666666665543333  2222223


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356           81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      .....++++.++++++++-..+..+..++.......... ........++++++++++++...++.|..+|.+....  .
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~--~  174 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--V  174 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE--E
T ss_pred             eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee--e
Confidence            456899999999998887777777888887654432221 2334567899999999888888889999999886532  2


Q ss_pred             EEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          160 VLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       160 ~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      .+ ..........|+++++|.++++.
T Consensus       175 ~~-~~~~~~~p~gi~~d~~g~l~vsd  199 (260)
T d1rwia_         175 VL-PFTDITAPWGIAVDEAGTVYVTE  199 (260)
T ss_dssp             EC-CCSSCCSEEEEEECTTCCEEEEE
T ss_pred             ee-eccccCCCccceeeeeeeeeeee
Confidence            22 12344567889999876655544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.17  E-value=6.5e-05  Score=73.13  Aligned_cols=173  Identities=12%  Similarity=0.073  Sum_probs=115.8

Q ss_pred             CccCCCCEEEEEECCCcEEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356            1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK   78 (568)
Q Consensus         1 afSpdG~~LasGs~DG~V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~   78 (568)
                      +|.+||+++++...++.+.+|+....  ..............+.+.+.++++ ++++-..++.+..+|.......+....
T Consensus        74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecC
Confidence            47899998888888888888876533  333333333456688899999986 778778888998888876642221111


Q ss_pred             ---------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eEeecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356           79 ---------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS---SCITYEAPFSSLAFIDDDWILTAGTSNGRV  146 (568)
Q Consensus        79 ---------~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v---~~~~h~~~ItsLafsPdg~~LasGs~DG~V  146 (568)
                               .....++.+.+.. +.++++....+.|+.+|+......   ..+........+++.++|+++++...++.|
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             CccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcE
Confidence                     1123456676653 445566678889999998764332   222345567789999999988888889999


Q ss_pred             EEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ..|+.....  ..+......-...++++|.+
T Consensus       232 ~~i~p~G~~--~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         232 VRIAPDRST--TIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             EEECTTCCE--EEEECGGGTCTTEEEEEECC
T ss_pred             EEECCCCCE--EEEEecCCCCCCceEEEEcC
Confidence            999887642  22222222345678999943

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.13  E-value=0.00048  Score=65.96  Aligned_cols=179  Identities=10%  Similarity=0.108  Sum_probs=120.8

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC-----CCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCCCCceeE
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~-----h~~~Vs~Lafspdg~~lLaT-gs~DGtV~VWDl~t~~~~v~   75 (568)
                      +.++|+.+++-..+..|++||. +|+.+..+...     ....-..+.+..+...++++ ...++.|.+++..... ...
T Consensus        30 vd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~-~~~  107 (279)
T d1q7fa_          30 VNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF-VRK  107 (279)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCE-EEE
T ss_pred             EcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccccc-eee
Confidence            5678887766666778999985 57777666321     11123445665554434443 3455678787765443 222


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR  152 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr  152 (568)
                      .-.........+++.++++++++....+.+.++|.. ++.+..+.   +......+++.++++++++....+.|++||..
T Consensus       108 ~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         108 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             cCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC
Confidence            223445668899999999988888888889998864 55555553   45568889999999998888889999999987


Q ss_pred             CCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ..  .+..+...++......|+++++|+.+++.
T Consensus       187 G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad  217 (279)
T d1q7fa_         187 GQ--YLRQIGGEGITNYPIGVGINSNGEILIAD  217 (279)
T ss_dssp             CC--EEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             Cc--eeeeecccccccCCcccccccCCeEEEEE
Confidence            64  23334333455668899999987766554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.2e-05  Score=79.26  Aligned_cols=138  Identities=10%  Similarity=0.081  Sum_probs=93.1

Q ss_pred             ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEE--------eCCCeEEEEECCCCC
Q 008356            2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTA--------GDDGTLHLWDTTGRS   71 (568)
Q Consensus         2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTg--------s~DGtV~VWDl~t~~   71 (568)
                      |.+++.++. -..+|.|.+||+.+++....+....  ...+....|+||++.+++..        +..+.+.+||+.++.
T Consensus        24 W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            666776554 3567899999998887644444322  23455678999999655543        335789999998776


Q ss_pred             ce-eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee--cCCC-----------------eEEEEEe
Q 008356           72 PK-VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--YEAP-----------------FSSLAFI  131 (568)
Q Consensus        72 ~~-v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--h~~~-----------------ItsLafs  131 (568)
                      .. +.........+....|+|||+.|+.+. ++.|.+.+...+..++...  ....                 -..+-|+
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            32 111122344566789999999998876 5679999988776655442  1111                 2467899


Q ss_pred             cCCCEEEEEE
Q 008356          132 DDDWILTAGT  141 (568)
Q Consensus       132 Pdg~~LasGs  141 (568)
                      |||++||...
T Consensus       182 PDgk~iaf~~  191 (465)
T d1xfda1         182 PDGTRLAYAA  191 (465)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999999875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=0.0011  Score=64.27  Aligned_cols=178  Identities=13%  Similarity=0.048  Sum_probs=113.1

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |.+.++.|.-.. ..+.|..||.++++.. .+.  ....+.++++.+++. +++ ++.+ -|.++|..+++.........
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~--~~~~~~~i~~~~dg~-l~v-a~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCEEEEECSST
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCeEE-EEE--CCCCcEEEEEecCCC-EEE-EEeC-ccEEeecccceeeEEeeeec
Confidence            555555555544 5678999998877643 343  235678899999886 444 4555 48889998776322111111


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEE-EcCCeEEEEECC
Q 008356           81 ---SAPTAGISFSSDDKIIASVGL----DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIR  152 (568)
Q Consensus        81 ---~~~VtslafsPdg~~LaSgs~----DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasG-s~DG~V~VWDlr  152 (568)
                         ...++++.+.++|++.++...    .+.-.+|.+..++.......-...+.++|+++++.++.. +..+.|..|+++
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence               235889999999997776542    234566766677665555545567889999999876655 457889999886


Q ss_pred             CCC-----CceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          153 GKP-----QPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       153 t~~-----~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      ...     +........+..+....++++.+|++.++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             ccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence            421     112222222344567788888877655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.91  E-value=0.00066  Score=66.69  Aligned_cols=194  Identities=14%  Similarity=0.123  Sum_probs=116.2

Q ss_pred             CccCCCCEEEEEEC-------CCcEEEEECCCCceeEEeeCC---CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356            1 MYNCKDEHLASISL-------SGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR   70 (568)
Q Consensus         1 afSpdG~~LasGs~-------DG~V~VWDl~tg~~v~~l~~~---h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~   70 (568)
                      +|.++|+++++...       +|.|..||..+++........   ....-..+.|.+++. +++++...+.|..+|.++.
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEEETTSC
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEEeCCCc
Confidence            47789987765322       467888998777654332210   112346799999987 6777777777888888765


Q ss_pred             CceeEEecc-CC----CCeEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCceeeEeecCCCeEEEEE
Q 008356           71 SPKVSWLKQ-HS----APTAGISFSSDDKIIASVGL---------------DKKLYTYDPGSRRPSSCITYEAPFSSLAF  130 (568)
Q Consensus        71 ~~~v~~l~~-H~----~~VtslafsPdg~~LaSgs~---------------DGtV~IWDlrt~~~v~~~~h~~~ItsLaf  130 (568)
                      ..  ..+.. ..    ...+.+++.++|++.++-..               +|.|+.++.. ++.......-...+.++|
T Consensus       103 ~~--~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~  179 (314)
T d1pjxa_         103 FE--EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAV  179 (314)
T ss_dssp             EE--ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEE
T ss_pred             EE--EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEE
Confidence            42  11111 11    23688999999998876422               2355555543 343333333344578999


Q ss_pred             ecCCC----EE-EEEEcCCeEEEEECCCCCCce--EEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356          131 IDDDW----IL-TAGTSNGRVVFYDIRGKPQPL--TVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD  201 (568)
Q Consensus       131 sPdg~----~L-asGs~DG~V~VWDlrt~~~~v--~~l~~~--~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg  201 (568)
                      ++++.    +| ++-+..+.|..||+.......  +.+...  .+......+++..+|++            +++....+
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnl------------yVa~~~~g  247 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL------------LVANWGSS  247 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE------------EEEEETTT
T ss_pred             CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcE------------EEEEcCCC
Confidence            98764    44 445678889999886543221  111111  12223556787776544            34444478


Q ss_pred             cEEcCCCCC
Q 008356          202 SILMPDPLP  210 (568)
Q Consensus       202 ~V~VWDlr~  210 (568)
                      .|.+||...
T Consensus       248 ~I~~~dp~~  256 (314)
T d1pjxa_         248 HIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEEeCCC
Confidence            888888654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.90  E-value=0.00083  Score=65.86  Aligned_cols=177  Identities=15%  Similarity=0.125  Sum_probs=107.5

Q ss_pred             ccCCCCEEEEEEC----CCcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeC------CCeEEEEECCCC
Q 008356            2 YNCKDEHLASISL----SGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGD------DGTLHLWDTTGR   70 (568)
Q Consensus         2 fSpdG~~LasGs~----DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~------DGtV~VWDl~t~   70 (568)
                      |.+||+++++...    .+.|...+.........+.. ......+.+++.++|+ +.++...      .+.+..++.+..
T Consensus        89 ~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~  167 (319)
T d2dg1a1          89 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR  167 (319)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             ECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc
Confidence            5677776655432    22344444444443333322 1234578899999997 5555322      133555554444


Q ss_pred             CceeEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCC-ceeeE----e----ecCCCeEEEEEecCCCEEEEE
Q 008356           71 SPKVSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSR-RPSSC----I----TYEAPFSSLAFIDDDWILTAG  140 (568)
Q Consensus        71 ~~~v~~l~~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~-~~v~~----~----~h~~~ItsLafsPdg~~LasG  140 (568)
                      .  +..+...-...+.++|+|+++.|+ +-...+.|+.||+... .....    .    ........+++..+|++.++.
T Consensus       168 ~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         168 T--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             C--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             e--eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            3  333333344578899999998664 4457889999998643 21111    1    112336789999999988888


Q ss_pred             EcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEE
Q 008356          141 TSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFI  183 (568)
Q Consensus       141 s~DG~V~VWDlrt~~~~v~~l~~~----~h~~~VtsLafspdg~~La  183 (568)
                      ...+.|.+||....  .+..+...    ++...+++++|.+.+..++
T Consensus       246 ~~~g~V~~~~p~G~--~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         246 YGQGRVLVFNKRGY--PIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             ETTTEEEEECTTSC--EEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             cCCCEEEEECCCCc--EEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            88999999997643  44445432    3445688999988654443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.87  E-value=0.00057  Score=63.55  Aligned_cols=94  Identities=17%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             ccCC--CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCcee
Q 008356            2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSPKV   74 (568)
Q Consensus         2 fSpd--G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~~~~v   74 (568)
                      .+||  |++||... +|.|.++|+..++.. .+.. +...+...+|+|||+.++++...++     .|.+++..+++  .
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~--~   80 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--I   80 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--E
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc--e
Confidence            4899  99988765 567999999887765 4443 4556778999999997666654433     37777777665  2


Q ss_pred             EEeccC-------CCCeEEEEEcCCCCEEEEEe
Q 008356           75 SWLKQH-------SAPTAGISFSSDDKIIASVG  100 (568)
Q Consensus        75 ~~l~~H-------~~~VtslafsPdg~~LaSgs  100 (568)
                      ..+..+       ......+.|+|+++.|+...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            333222       23457788999999888653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.0003  Score=73.23  Aligned_cols=177  Identities=8%  Similarity=0.039  Sum_probs=105.8

Q ss_pred             ccCCCCEEEEEEC---------CCcEEEEECCCCceeEEeeC-CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356            2 YNCKDEHLASISL---------SGDLILHNLASGAKAAELKD-PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         2 fSpdG~~LasGs~---------DG~V~VWDl~tg~~v~~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      |+||+++|+....         .+.+.|+|+.++........ .....+....|+|+|+.+.++  .++.|++.+..++.
T Consensus        68 ~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~  145 (465)
T d1xfda1          68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQ  145 (465)
T ss_dssp             ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSC
T ss_pred             ECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecCCCc
Confidence            7999999887643         46789999988875433221 123345557899999965554  35778888887665


Q ss_pred             ceeEEeccCCCCe-----------------EEEEEcCCCCEEEEEeCC-C------------------------------
Q 008356           72 PKVSWLKQHSAPT-----------------AGISFSSDDKIIASVGLD-K------------------------------  103 (568)
Q Consensus        72 ~~v~~l~~H~~~V-----------------tslafsPdg~~LaSgs~D-G------------------------------  103 (568)
                      .......+....|                 ..+.|+|||++|+....| .                              
T Consensus       146 ~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~n  225 (465)
T d1xfda1         146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (465)
T ss_dssp             CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCC
Confidence            3322222222222                 467899999999976422 1                              


Q ss_pred             ---eEEEEECCCCceeeEe-e------cCCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCCCCceEEEeecCCCCC
Q 008356          104 ---KLYTYDPGSRRPSSCI-T------YEAPFSSLAFIDDDWILTAGTSN----GRVVFYDIRGKPQPLTVLRACSSSEA  169 (568)
Q Consensus       104 ---tV~IWDlrt~~~v~~~-~------h~~~ItsLafsPdg~~LasGs~D----G~V~VWDlrt~~~~v~~l~~~~h~~~  169 (568)
                         .+.++|+..+...... .      ....+..+.|.+++++++.....    ..|.++|..++.. ..++.. ...++
T Consensus       226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~-~~~~~e-~~~~w  303 (465)
T d1xfda1         226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHED-ESEAW  303 (465)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEE-ECSSC
T ss_pred             CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE-EEEEEE-cCCce
Confidence               2455555544322111 0      12236788999998876664432    2588899988743 233321 22333


Q ss_pred             e----eEEEEccCCCeE
Q 008356          170 V----SSLCWQRAKPVF  182 (568)
Q Consensus       170 V----tsLafspdg~~L  182 (568)
                      |    ....|.++|+.+
T Consensus       304 v~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         304 LHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CCCCCCCCEECTTSCSE
T ss_pred             EeccCCceeEccCCCee
Confidence            3    235788887754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.58  E-value=0.0074  Score=58.27  Aligned_cols=165  Identities=15%  Similarity=0.108  Sum_probs=106.6

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC---CCcEEEEEEccCCCeEEEEEeC----CCeEEEEECCCCCceeE
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPN---EQVLRVLDYSRNSRHLLVTAGD----DGTLHLWDTTGRSPKVS   75 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h---~~~Vs~Lafspdg~~lLaTgs~----DGtV~VWDl~t~~~~v~   75 (568)
                      ..+|++++ ++.+ -|.++|..+++.........   ...++++.+.++|+ +.++...    .+.-.+|.+..++  +.
T Consensus        67 ~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~--~~  141 (295)
T d2ghsa1          67 ISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK--VT  141 (295)
T ss_dssp             EETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE--EE
T ss_pred             ecCCCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCc--EE
Confidence            34555554 4555 58899998887654333211   23578899999998 4444322    2345667665554  33


Q ss_pred             EeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCC------ceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           76 WLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSR------RPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~------~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      .+...-...+.++|+++++.++ +-+..+.|+.|++...      +.....   ...+....+++..+|++.++.-..+.
T Consensus       142 ~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~  221 (295)
T d2ghsa1         142 KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA  221 (295)
T ss_dssp             EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred             EEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc
Confidence            3333344578999999888665 4456788999987432      111111   23455789999999998888778899


Q ss_pred             EEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 008356          146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ  176 (568)
Q Consensus       146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafs  176 (568)
                      |..||.+..  .+..+...  ...+++++|-
T Consensus       222 V~~~dp~G~--~~~~i~lP--~~~~T~~~FG  248 (295)
T d2ghsa1         222 VDRYDTDGN--HIARYEVP--GKQTTCPAFI  248 (295)
T ss_dssp             EEEECTTCC--EEEEEECS--CSBEEEEEEE
T ss_pred             eEEecCCCc--EeeEecCC--CCceEEEEEe
Confidence            999998654  44555532  2568899985

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.03  E-value=0.0053  Score=56.59  Aligned_cols=95  Identities=13%  Similarity=0.113  Sum_probs=68.8

Q ss_pred             EEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCce
Q 008356           44 DYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-D-----KKLYTYDPGSRRP  115 (568)
Q Consensus        44 afspd--g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~-D-----GtV~IWDlrt~~~  115 (568)
                      ..+|+  |++++++.  +|.|.++|+.+++  .+.+..+...+...+|+|||+.|+.... +     ..|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35688  88655553  4568899999887  4566777788999999999999986642 2     2488888888876


Q ss_pred             eeEeec-------CCCeEEEEEecCCCEEEEEEc
Q 008356          116 SSCITY-------EAPFSSLAFIDDDWILTAGTS  142 (568)
Q Consensus       116 v~~~~h-------~~~ItsLafsPdg~~LasGs~  142 (568)
                      ......       ........|+|+|+.|+....
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            554322       234568899999999887543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.93  E-value=0.041  Score=54.84  Aligned_cols=203  Identities=13%  Similarity=0.133  Sum_probs=123.4

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc----CCCe-EEEEEe-CC---CeEEEEECCCCCcee
Q 008356            4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR----NSRH-LLVTAG-DD---GTLHLWDTTGRSPKV   74 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp----dg~~-lLaTgs-~D---GtV~VWDl~t~~~~v   74 (568)
                      |+..+|+...+++-|++||+ +|+.+..+..   +.++.|..-.    .++. .|+.++ ++   ..|.+|.+......+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECCS---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEeccc---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            44567777777777999998 5888877653   3445444332    1221 233444 32   368888886433233


Q ss_pred             EEeccC-------CCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEECC---CC----ceeeEeecCCCeEEEEEecCCCE
Q 008356           75 SWLKQH-------SAPTAGISF--SS-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI  136 (568)
Q Consensus        75 ~~l~~H-------~~~Vtslaf--sP-dg~-~LaSgs~DGtV~IWDlr---t~----~~v~~~~h~~~ItsLafsPdg~~  136 (568)
                      ..+...       ...++.+|+  ++ ++. +++....+|.+..|.+.   .+    +.++.+.....+..|.+.+....
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS  193 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence            333221       224677777  56 454 45667788998888763   23    34556677888999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCC-CceEEE-eec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC-C
Q 008356          137 LTAGTSNGRVVFYDIRGKP-QPLTVL-RAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP-S  211 (568)
Q Consensus       137 LasGs~DG~V~VWDlrt~~-~~v~~l-~~~--~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~-~  211 (568)
                      |+++-++.-|..++.+-.. .....+ ...  ...+-+-.|+.-..        ....+.++++.-.+++..+||... +
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~--------~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYA--------ADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEEC--------GGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEc--------CCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            9999998888777765321 111222 111  12345666665432        123456677777799999999764 4


Q ss_pred             Ccccccc
Q 008356          212 VTTSSVS  218 (568)
Q Consensus       212 ~~~~s~~  218 (568)
                      ...++..
T Consensus       266 ~~~g~F~  272 (353)
T d1h6la_         266 KYVADFQ  272 (353)
T ss_dssp             CEEEEEE
T ss_pred             cccceEE
Confidence            4444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.18  Score=47.46  Aligned_cols=171  Identities=6%  Similarity=-0.056  Sum_probs=105.3

Q ss_pred             EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCe
Q 008356            8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPT   84 (568)
Q Consensus         8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---~~v~~l~~H~~~V   84 (568)
                      +|+.+. ...|+-+++.+.+....+.  ....+..|+|+...+.++.+=..++.|+..+++...   .....+......+
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~~--~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCCcceeeeC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            344443 3468889997665444443  333456799998887566665567778877775422   1122333444567


Q ss_pred             EEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEE--cCCeEEEEECCCCCCceEE
Q 008356           85 AGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGT--SNGRVVFYDIRGKPQPLTV  160 (568)
Q Consensus        85 tslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs--~DG~V~VWDlrt~~~~v~~  160 (568)
                      .++++...+..| ++-...++|.+.++......... ........++++|...+|....  ..+.|...++.....  ..
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~--~~  157 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YS  157 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce--ec
Confidence            789998745544 44456778999999876654444 3456789999999766666544  345687788876532  22


Q ss_pred             EeecCCCCCeeEEEEccCCCeEEE
Q 008356          161 LRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       161 l~~~~h~~~VtsLafspdg~~Las  184 (568)
                      +.. ..-.....+++++.++.|..
T Consensus       158 l~~-~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         158 LVT-ENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             EEC-SSCSCEEEEEEETTTTEEEE
T ss_pred             ccc-cccceeeEEEeeccccEEEE
Confidence            221 23356788999886544433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.88  E-value=0.026  Score=57.69  Aligned_cols=135  Identities=10%  Similarity=0.031  Sum_probs=93.2

Q ss_pred             EEEEECCCcEEEEECCCCceeEEeeCCC--------------------------------------CCcE--EEEEEcc-
Q 008356            9 LASISLSGDLILHNLASGAKAAELKDPN--------------------------------------EQVL--RVLDYSR-   47 (568)
Q Consensus         9 LasGs~DG~V~VWDl~tg~~v~~l~~~h--------------------------------------~~~V--s~Lafsp-   47 (568)
                      +.+|+..|.|+|+-+-+++.++.+..-.                                      .+-.  -.+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5678999999999999888776553200                                      0000  1233332 


Q ss_pred             --CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCC------------------eE
Q 008356           48 --NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDK------------------KL  105 (568)
Q Consensus        48 --dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DG------------------tV  105 (568)
                        ||+++++.-..+..|-+-|++..+............+..+...+  +..+++..+++.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              67766666668899999999888743222223445567766654  666777776643                  36


Q ss_pred             EEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC
Q 008356          106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN  143 (568)
Q Consensus       106 ~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D  143 (568)
                      .++|..+.+....+...+....+.++++|+++++.+.+
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence            78899998888777777788899999999999987643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.84  E-value=0.029  Score=57.37  Aligned_cols=192  Identities=12%  Similarity=0.010  Sum_probs=117.9

Q ss_pred             CCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCC------------------eEE
Q 008356            4 CKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDG------------------TLH   63 (568)
Q Consensus         4 pdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DG------------------tV~   63 (568)
                      +||++|++.. .++.|.+.|+.+.++...+..+....+..+...++.+ .+++.++++.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4788888876 4789999999999987766665666777777654432 2566655532                  356


Q ss_pred             EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------eE
Q 008356           64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--------------------------------------KL  105 (568)
Q Consensus        64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG--------------------------------------tV  105 (568)
                      ++|..+.+...+..  -......++++++|+++++.+.+.                                      .+
T Consensus       177 ~ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         177 AVDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            77887766322222  233466789999999998876431                                      13


Q ss_pred             EEEECCCC---ceeeEeecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCC-------CceEEEee-cCCCCCeeEE
Q 008356          106 YTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKP-------QPLTVLRA-CSSSEAVSSL  173 (568)
Q Consensus       106 ~IWDlrt~---~~v~~~~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~-------~~v~~l~~-~~h~~~VtsL  173 (568)
                      .+.|.+..   ..+..+........+.++|||+++++++ -+.+|.|+|++...       .+...+.. ....-....-
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            44444421   1222333344456789999999988876 48899999997421       11111110 0111122334


Q ss_pred             EEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       174 afspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      +|+.            .+..+.+.-.|..|.-|++.
T Consensus       335 ~fd~------------~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         335 AFDG------------RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EECT------------TSEEEEEETTTTEEEEEEHH
T ss_pred             ccCC------------CceEEEEeeccceEEEEecc
Confidence            4544            33455555669999999874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.45  Score=44.50  Aligned_cols=170  Identities=11%  Similarity=0.046  Sum_probs=105.2

Q ss_pred             CEEEEEECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356            7 EHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS   81 (568)
Q Consensus         7 ~~LasGs~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~   81 (568)
                      .+|+.+. .+.|+-.+++....     ...+.. ....+..|+|....+.++.+-..++.|+..++++... ...+....
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~-~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDL   78 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTC
T ss_pred             CEEEEeC-CCeEEEEECCCcccccccccccccc-CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEecc
Confidence            3444443 35777777753321     111221 2234667899988776666666778899999987653 33344444


Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCC
Q 008356           82 APTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQ  156 (568)
Q Consensus        82 ~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~  156 (568)
                      ..+.++++..-++.|+ +-...+.|.+.++........+. ....+..++++|...+|+....   ...|..-+++....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            5689999987555554 55567799999998765544443 3367899999997777665433   23455567766532


Q ss_pred             ceEEEeecCCCCCeeEEEEccCCCeE
Q 008356          157 PLTVLRACSSSEAVSSLCWQRAKPVF  182 (568)
Q Consensus       157 ~v~~l~~~~h~~~VtsLafspdg~~L  182 (568)
                       .....  ..-.....|++++.++.|
T Consensus       159 -~~i~~--~~~~~P~glaiD~~~~~l  181 (263)
T d1npea_         159 -RILAQ--DNLGLPNGLTFDAFSSQL  181 (263)
T ss_dssp             -EEEEC--TTCSCEEEEEEETTTTEE
T ss_pred             -eeeee--ecccccceEEEeecCcEE
Confidence             22222  233566789998765444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.49  Score=44.26  Aligned_cols=189  Identities=10%  Similarity=0.001  Sum_probs=115.2

Q ss_pred             ccCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356            2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH   80 (568)
Q Consensus         2 fSpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H   80 (568)
                      |.+.+++|+... .++.|+..++........+.. .-..+..|++...++++.++-...+.|.+.++++... ...+...
T Consensus        43 ~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~  120 (263)
T d1npea_          43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTG  120 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEeccc
Confidence            445566666554 346677777755444333332 2345678899877776667777788999999987763 2233344


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-C--CCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCC
Q 008356           81 SAPTAGISFSSDDKIIASVG-L--DKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKP  155 (568)
Q Consensus        81 ~~~VtslafsPdg~~LaSgs-~--DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~  155 (568)
                      ...+..++++|...+++... .  ...|...++.......... .-.....+++++.++.|+... ..+.|...|++...
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            46789999999666555443 2  2345555666544433332 335678999998877776654 57889999998753


Q ss_pred             CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                       ...++.  +. ....+|++..             +.++++....+.|...|..
T Consensus       201 -~~~v~~--~~-~~P~~lav~~-------------~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         201 -RRKVLE--GL-QYPFAVTSYG-------------KNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             -EEEEEE--CC-CSEEEEEEET-------------TEEEEEETTTTEEEEEETT
T ss_pred             -eEEEEC--CC-CCcEEEEEEC-------------CEEEEEECCCCEEEEEECC
Confidence             223333  21 2234666542             2344444445666666654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.20  E-value=0.11  Score=54.65  Aligned_cols=143  Identities=10%  Similarity=-0.000  Sum_probs=87.8

Q ss_pred             CcEEEEECCCCceeEEeeCCCCC----------cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc------
Q 008356           16 GDLILHNLASGAKAAELKDPNEQ----------VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ------   79 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~----------~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~------   79 (568)
                      ..|...|+++|+.+..++..+.+          ....+.........++.++.+|.++++|..+++.+...-..      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            45777899999988877753322          12223332222235678889999999998887643211000      


Q ss_pred             ------------------------------CCCCe--EEEEEcCCCCEEEEEeCC-------------------------
Q 008356           80 ------------------------------HSAPT--AGISFSSDDKIIASVGLD-------------------------  102 (568)
Q Consensus        80 ------------------------------H~~~V--tslafsPdg~~LaSgs~D-------------------------  102 (568)
                                                    ..+..  ...+++|+..+++....+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                          00000  124566766655543322                         


Q ss_pred             ------------CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356          103 ------------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL  158 (568)
Q Consensus       103 ------------GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v  158 (568)
                                  |.|..+|+.+++.+.......+..+-.+.-.+.++++|+.||.++.+|.++++...
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW  499 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEE
Confidence                        46888899999888777544443322233346788889999999999999986443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.52  Score=44.04  Aligned_cols=158  Identities=13%  Similarity=0.032  Sum_probs=101.4

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCce
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRP  115 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~  115 (568)
                      ..+..|++...++++.++-...+.|.+.++++... ...+.........++++|...+|+...  ..+.|...++.....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            34567888877777777777788999999988763 333445566789999999555554443  345687788766554


Q ss_pred             eeEee-cCCCeEEEEEecCCCEEEEE-EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeE
Q 008356          116 SSCIT-YEAPFSSLAFIDDDWILTAG-TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETA  193 (568)
Q Consensus       116 v~~~~-h~~~ItsLafsPdg~~LasG-s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~  193 (568)
                      ..... .-.....+++++.++.|+.+ ...+.|...|+.+... ..+...........+|++..             +.+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~-------------~~l  221 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-------------DKV  221 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-------------TEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEEC-------------CEE
Confidence            44443 33567899999987777666 4568899999987643 23333222223455666653             234


Q ss_pred             EEEecCCCcEEcCCCCC
Q 008356          194 LLGGAVGDSILMPDPLP  210 (568)
Q Consensus       194 Lls~s~Dg~V~VWDlr~  210 (568)
                      +++...++.|...+...
T Consensus       222 y~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         222 FWTDIINEAIFSANRLT  238 (266)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEECCCCeEEEEECCC
Confidence            44444566666555433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.85  E-value=0.11  Score=54.52  Aligned_cols=144  Identities=14%  Similarity=0.149  Sum_probs=91.5

Q ss_pred             CcEEEEECCCCceeEEeeCCCCCc----------EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC--
Q 008356           16 GDLILHNLASGAKAAELKDPNEQV----------LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP--   83 (568)
Q Consensus        16 G~V~VWDl~tg~~v~~l~~~h~~~----------Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~--   83 (568)
                      ..|.-.|+++++.+..++..+.+.          +..+........+++.+..+|.++++|..+++............  
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            356677888998877766533221          22233332223467788899999999998877432221111000  


Q ss_pred             ---------------------------------eEEEEEcCCCCEEEEEeC-----------------------------
Q 008356           84 ---------------------------------TAGISFSSDDKIIASVGL-----------------------------  101 (568)
Q Consensus        84 ---------------------------------VtslafsPdg~~LaSgs~-----------------------------  101 (568)
                                                       -...+++|+..+++....                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                             013456676666554332                             


Q ss_pred             -------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356          102 -------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus       102 -------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                             .|.|.-||+.+++.+..+....+...-.+.-.+.++++|+.||.++.||.++++.+.+
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence                   2568889999999888776555544434444577888999999999999999964433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.77  E-value=0.037  Score=53.68  Aligned_cols=148  Identities=16%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             CCCCEEEEEECCC-----------cEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-CeEEEEECCC
Q 008356            4 CKDEHLASISLSG-----------DLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLWDTTG   69 (568)
Q Consensus         4 pdG~~LasGs~DG-----------~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-GtV~VWDl~t   69 (568)
                      .+|+.++.|+.+.           .+.+||+.+++-  .......+.......++.+++. +++.|+.+ ..+.+||..+
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGG
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCcc
Confidence            4678888888531           377899987653  2333333433344567888987 77777655 5799999876


Q ss_pred             CCceeEEecc--CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeeEee----------c-----CCCeE
Q 008356           70 RSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCIT----------Y-----EAPFS  126 (568)
Q Consensus        70 ~~~~v~~l~~--H~~~VtslafsPdg~~LaSgs~D------GtV~IWDlrt~~~v~~~~----------h-----~~~It  126 (568)
                      ...  .....  ....-..++..+|+++++.++.+      ..+.+||..+.+-...-.          +     .....
T Consensus       108 ~~w--~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (387)
T d1k3ia3         108 DSW--IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA  185 (387)
T ss_dssp             TEE--EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSC
T ss_pred             Ccc--cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecccee
Confidence            652  22211  12223456667799999988753      368999998765322110          0     00111


Q ss_pred             EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356          127 SLAFIDDDWILTAGTSNGRVVFYDIRGK  154 (568)
Q Consensus       127 sLafsPdg~~LasGs~DG~V~VWDlrt~  154 (568)
                      .+..-++|++++.+..++.+.++|..+.
T Consensus       186 ~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         186 WLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             CEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            2233346777777777777777777664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.54  E-value=0.68  Score=45.09  Aligned_cols=172  Identities=14%  Similarity=0.100  Sum_probs=98.4

Q ss_pred             cCCCCEEEEEEC------------CCcEEEEECCCCcee-EE--eeCCCC----CcEEEEEE--ccCCCeEEEEEe---C
Q 008356            3 NCKDEHLASISL------------SGDLILHNLASGAKA-AE--LKDPNE----QVLRVLDY--SRNSRHLLVTAG---D   58 (568)
Q Consensus         3 SpdG~~LasGs~------------DG~V~VWDl~tg~~v-~~--l~~~h~----~~Vs~Laf--spdg~~lLaTgs---~   58 (568)
                      .|+|..+++++.            .|.|.++|+.+.+.. ..  +.+...    -.-..+.+  ..++..+|++..   .
T Consensus        43 ~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~  122 (340)
T d1v04a_          43 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS  122 (340)
T ss_dssp             CTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTT
T ss_pred             CCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCC
Confidence            467766655432            489999998765422 12  221110    11233433  455665566554   3


Q ss_pred             CCeEEEEECCCCCceeEEec----cCCCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCceee
Q 008356           59 DGTLHLWDTTGRSPKVSWLK----QHSAPTAGISFSSDDKIIASVG-----------------LDKKLYTYDPGSRRPSS  117 (568)
Q Consensus        59 DGtV~VWDl~t~~~~v~~l~----~H~~~VtslafsPdg~~LaSgs-----------------~DGtV~IWDlrt~~~v~  117 (568)
                      ..+|.+|++...........    ......+++++..++.+++|-.                 ..+.|..||.  ++...
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~  200 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV  200 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEE
Confidence            56788998854432222221    1234579999998888888732                 1223444543  33333


Q ss_pred             EeecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356          118 CITYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR  177 (568)
Q Consensus       118 ~~~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp  177 (568)
                      ....-...+.|+++||+++|+++. ..++|++|++..... ........-.+.+-.+.+.+
T Consensus       201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECT
T ss_pred             EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEec
Confidence            334446689999999998877765 578899999986533 22222222345566777765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.32  E-value=0.15  Score=53.29  Aligned_cols=80  Identities=11%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeE--EEEEecCCC-E
Q 008356           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS--SLAFIDDDW-I  136 (568)
Q Consensus        60 GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~It--sLafsPdg~-~  136 (568)
                      |.|.-||+.+++..  +......+...-.+.-.+.+++.++.||.++.+|.++|+.+..+.....+.  -+.|.-+|+ |
T Consensus       438 G~l~A~D~~tGk~~--W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAA--WKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEE--EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEe--eeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            45777888777632  222222222222233356788889999999999999999998885444332  245556674 5


Q ss_pred             EEEEE
Q 008356          137 LTAGT  141 (568)
Q Consensus       137 LasGs  141 (568)
                      |++..
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.87  E-value=0.27  Score=51.50  Aligned_cols=57  Identities=18%  Similarity=0.356  Sum_probs=41.7

Q ss_pred             CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus       103 GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |.|.-||+.+++.+..+....+...=.+.-.+.+|++|+.||.++.||.++++.+.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~  513 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE
Confidence            357788888888887775554433323344678888999999999999999965433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.67  E-value=0.29  Score=51.17  Aligned_cols=49  Identities=8%  Similarity=0.106  Sum_probs=35.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEE--EEEecCCC-EEEEE
Q 008356           92 DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS--LAFIDDDW-ILTAG  140 (568)
Q Consensus        92 dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~Its--LafsPdg~-~LasG  140 (568)
                      .+.+++.++.|+.++.+|.++|+.+..+.....+..  +.|.-+|+ ||++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA  538 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            577888899999999999999999988864443332  45555675 44443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.24  E-value=2.6  Score=40.58  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=71.2

Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-
Q 008356            3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-   81 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-   81 (568)
                      ||..+.||.-+ ..+++|||+++.+.++.+.- .+..+. -+|-.+.  .|+-.. +..|+-|++++...+.+.+..|. 
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~-~e~Vvf-WkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTF-WKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCE-EEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEECCGG
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEE-EEecCCC--EEEEEc-CCceEEEcccCCCCchhhhhhccc
Confidence            68888888776 56899999999999988875 445555 5887664  354444 36799999976655666666664 


Q ss_pred             ---CCeEEEEEcCCCCEEEEEe---C----CCeEEEEECCC
Q 008356           82 ---APTAGISFSSDDKIIASVG---L----DKKLYTYDPGS  112 (568)
Q Consensus        82 ---~~VtslafsPdg~~LaSgs---~----DGtV~IWDlrt  112 (568)
                         ..|-.-..+++.++++..+   .    .|.+.+|..+.
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence               3566666777777776543   1    23566666543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.20  E-value=0.67  Score=48.64  Aligned_cols=57  Identities=9%  Similarity=-0.081  Sum_probs=42.7

Q ss_pred             CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus       103 GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |.|.-||+.+++.+....+..++..-.+.-.+.++++|+.||.++.||.++++...+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~  509 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE
Confidence            468888999998887765555544333444678888899999999999999965433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.99  E-value=0.26  Score=51.62  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=47.6

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEE--EEEecCCC-E
Q 008356           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSS--LAFIDDDW-I  136 (568)
Q Consensus        60 GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~Its--LafsPdg~-~  136 (568)
                      |.|.-+|+.+++...+  ..+..+..+-...-.+.+++.++.|+.++.+|.++++.+..+.....+..  +.|..||+ |
T Consensus       444 G~l~AiD~~TG~~~W~--~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWT--KWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEE--EEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeE--cCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            3566666666663222  21222211111222467888899999999999999999988865544432  55555664 4


Q ss_pred             EEEE
Q 008356          137 LTAG  140 (568)
Q Consensus       137 LasG  140 (568)
                      +++.
T Consensus       522 i~v~  525 (571)
T d2ad6a1         522 IGSM  525 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.67  E-value=3.6  Score=40.37  Aligned_cols=108  Identities=12%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             ccCCCCEEEEEE-CCC----cEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeC---------------CC
Q 008356            2 YNCKDEHLASIS-LSG----DLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGD---------------DG   60 (568)
Q Consensus         2 fSpdG~~LasGs-~DG----~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~---------------DG   60 (568)
                      ++||+++++.+- .+|    .|+++|+.+++.+.. +..   .....++|.++++.++++.-.               ..
T Consensus       132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             ecCCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            589999988643 333    699999999987643 221   111357899999866665422               23


Q ss_pred             eEEEEECCCCCce-eEEeccCC--CCeEEEEEcCCCCEEEEEeC---CCe--EEEEECCC
Q 008356           61 TLHLWDTTGRSPK-VSWLKQHS--APTAGISFSSDDKIIASVGL---DKK--LYTYDPGS  112 (568)
Q Consensus        61 tV~VWDl~t~~~~-v~~l~~H~--~~VtslafsPdg~~LaSgs~---DGt--V~IWDlrt  112 (568)
                      .|.+|.+.+.... +.......  ..+..+..+.++++++....   +..  +.+.|+..
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence            6888888665322 23333332  34666778889988764432   233  45556543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.59  E-value=0.53  Score=44.96  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             EEccCCCeEEEEEeCCC-----------eEEEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEE
Q 008356           44 DYSRNSRHLLVTAGDDG-----------TLHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLD-KKLYTYD  109 (568)
Q Consensus        44 afspdg~~lLaTgs~DG-----------tV~VWDl~t~~~~--v~~l~~H~~~VtslafsPdg~~LaSgs~D-GtV~IWD  109 (568)
                      ....+++ +++.|+.+.           .+.+||..++.-.  ......|.......++.+++++++.|+.+ ..+.+||
T Consensus        26 ~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          26 IEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            3444565 777776421           3789999776521  11223344445567788999999988765 5899999


Q ss_pred             CCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcC------CeEEEEECCCC
Q 008356          110 PGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSN------GRVVFYDIRGK  154 (568)
Q Consensus       110 lrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~D------G~V~VWDlrt~  154 (568)
                      ..+..-...-  .....-..++..+||++++.|+.+      ..+.+||+.+.
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            9876543222  222334467777899999998753      35899999875

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.33  E-value=2.3  Score=44.05  Aligned_cols=57  Identities=16%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356          103 KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT  159 (568)
Q Consensus       103 GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~  159 (568)
                      |.|.-+|+.+++.+.......++..-.+...+.++++|+.||.++.||.++++.+.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~  522 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE
Confidence            578889999999888776555554333445678888999999999999999965433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.95  E-value=4  Score=39.28  Aligned_cols=124  Identities=9%  Similarity=0.038  Sum_probs=74.5

Q ss_pred             CCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEe--C-------------CCeEEEEECCCCCceeE
Q 008356           15 SGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAG--D-------------DGTLHLWDTTGRSPKVS   75 (568)
Q Consensus        15 DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs--~-------------DGtV~VWDl~t~~~~v~   75 (568)
                      ..+|.+|++....    .+..+........++|.+..++. +++|-.  .             -+...+|..+.+.  ..
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~--~~  199 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VR  199 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC--EE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc--eE
Confidence            4567777764322    12344444445678888888886 666621  0             1234455554444  23


Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcee---eEeecCCCeEEEEEecC-CCEEEEEE
Q 008356           76 WLKQHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPS---SCITYEAPFSSLAFIDD-DWILTAGT  141 (568)
Q Consensus        76 ~l~~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt~~~v---~~~~h~~~ItsLafsPd-g~~LasGs  141 (568)
                      .....-...+.|+++|++++|+.+ ...++|++|++.....+   ..+.......-+.+.++ |.+.+.+.
T Consensus       200 ~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         200 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            333344568999999998877655 46778999998754322   22345566778888764 55544443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.39  E-value=1.8  Score=44.89  Aligned_cols=79  Identities=11%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeE--EEEEecCCC-E
Q 008356           60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS--SLAFIDDDW-I  136 (568)
Q Consensus        60 GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~It--sLafsPdg~-~  136 (568)
                      |.|.-+|+.+++...+  .....++..-...-.+.+++.++.||.++.+|.++|+.+..+.....+.  -+.|..+|+ |
T Consensus       466 G~l~AiD~~TG~i~W~--~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWE--HKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEE--EEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEee--cCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5677777777763322  2222233222233467788889999999999999999998886443332  256667774 5


Q ss_pred             EEEE
Q 008356          137 LTAG  140 (568)
Q Consensus       137 LasG  140 (568)
                      +++.
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.85  E-value=3.8  Score=39.35  Aligned_cols=139  Identities=11%  Similarity=0.103  Sum_probs=95.2

Q ss_pred             CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEE
Q 008356           59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        59 DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~La  138 (568)
                      ...|.|-|+.......+.-..    ..+.-.+|..+.|+.-+ ..+|.++|+++.+.+..+.....|.--.|-.+ +.|+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEE
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEE
Confidence            357889999765533332221    23445688888887766 56899999999999999988888888888765 5666


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecC--CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356          139 AGTSNGRVVFYDIRGKPQPLTVLRACS--SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL  209 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v~~l~~~~--h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr  209 (568)
                      ..+. ..|+=|++++...|.+++..+.  ....|..-..+++++|++..+-......+     .|.+.+|.+.
T Consensus       118 lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i-----~G~mQLYS~e  184 (327)
T d1utca2         118 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV-----VGAMQLYSVD  184 (327)
T ss_dssp             EECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEE-----EEEEEEEETT
T ss_pred             EEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCce-----eEEEEEEEec
Confidence            6653 5799999988777888887432  13457778889999997654322111211     3667777654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.80  E-value=2.3  Score=44.31  Aligned_cols=202  Identities=12%  Similarity=0.025  Sum_probs=108.0

Q ss_pred             EEEE-EECCCcEEEEEC-CCCceeEEeeCCCC----------CcEEEEEEccCC---CeEEEEEeCCCeEEEEECCCCCc
Q 008356            8 HLAS-ISLSGDLILHNL-ASGAKAAELKDPNE----------QVLRVLDYSRNS---RHLLVTAGDDGTLHLWDTTGRSP   72 (568)
Q Consensus         8 ~Las-Gs~DG~V~VWDl-~tg~~v~~l~~~h~----------~~Vs~Lafspdg---~~lLaTgs~DGtV~VWDl~t~~~   72 (568)
                      .|++ .+.++.|...|. ++|+.+-.+.....          ...+.+++.++.   ..+++.+..|+.|.-.|..+++.
T Consensus        64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~  143 (596)
T d1w6sa_          64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (596)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCce
Confidence            4444 445678888887 57998877652111          111334443331   23688889999999999998884


Q ss_pred             eeEEeccCCCCeEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCceeeEeecC----------------------
Q 008356           73 KVSWLKQHSAPTAGISFSS--DDKIIASVGL------DKKLYTYDPGSRRPSSCITYE----------------------  122 (568)
Q Consensus        73 ~v~~l~~H~~~VtslafsP--dg~~LaSgs~------DGtV~IWDlrt~~~v~~~~h~----------------------  122 (568)
                      ....-......-..+.-.|  .+..++.+..      .|.|+-+|.++++.+..+...                      
T Consensus       144 ~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~  223 (596)
T d1w6sa_         144 VWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK  223 (596)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred             eccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence            3322111100000111112  2344555542      489999999999998765211                      


Q ss_pred             ----------------C-CeEEEEEecCCCEEEEEEcC----------------CeEEEEECCCCCCceEEEeecCCCCC
Q 008356          123 ----------------A-PFSSLAFIDDDWILTAGTSN----------------GRVVFYDIRGKPQPLTVLRACSSSEA  169 (568)
Q Consensus       123 ----------------~-~ItsLafsPdg~~LasGs~D----------------G~V~VWDlrt~~~~v~~l~~~~h~~~  169 (568)
                                      . .-..+.+.+...+++.+..+                ..|.-.|+++++... .++...|...
T Consensus       224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W-~~Q~~~~D~W  302 (596)
T d1w6sa_         224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF-GYQKTPHDEW  302 (596)
T ss_dssp             THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE-EEESSTTCSS
T ss_pred             ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccc-cccceecccc
Confidence                            0 11245667777777766443                347778888875322 2332223222


Q ss_pred             eeEEEEccCCCeEEEec--cCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356          170 VSSLCWQRAKPVFIDET--TCKAETALLGGAVGDSILMPDPLPSVT  213 (568)
Q Consensus       170 VtsLafspdg~~Las~s--~ssd~~~Lls~s~Dg~V~VWDlr~~~~  213 (568)
                      -...   +....++...  .......++....++.+.++|-.....
T Consensus       303 d~d~---~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~  345 (596)
T d1w6sa_         303 DYAG---VNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (596)
T ss_dssp             CCCC---CCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             CCcc---ccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence            1111   1111222211  112234566677788888888765543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.54  E-value=1.5  Score=43.33  Aligned_cols=102  Identities=9%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCC----eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC--------------
Q 008356           83 PTAGISFSSDDKIIASV-GLDK----KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------------  143 (568)
Q Consensus        83 ~VtslafsPdg~~LaSg-s~DG----tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D--------------  143 (568)
                      .+..++++|++++++.+ +.+|    .|+++|+.+++.+...-.......++|.+|+..|+....+              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            34566789999988754 3333    7999999999876432122223568899999887765432              


Q ss_pred             --CeEEEEECCCCCCc-eEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356          144 --GRVVFYDIRGKPQP-LTVLRACSSSEAVSSLCWQRAKPVFID  184 (568)
Q Consensus       144 --G~V~VWDlrt~~~~-v~~l~~~~h~~~VtsLafspdg~~Las  184 (568)
                        ..|.+|.+.+.... ..++........+..+..+.++++++.
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence              25888888765322 223332223344666777887777643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.56  E-value=20  Score=35.29  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=57.7

Q ss_pred             CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEec------cCCCCeEEEEEcCC---CCEEEEEeC------
Q 008356           38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLK------QHSAPTAGISFSSD---DKIIASVGL------  101 (568)
Q Consensus        38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~------~H~~~VtslafsPd---g~~LaSgs~------  101 (568)
                      ..-++|+|.|+++ +|++--..|.|++++..++... +..+.      .-......|+|+|+   ..+|.....      
T Consensus        27 ~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3456899999998 6665545799999987666522 11111      12345788999983   344433210      


Q ss_pred             -C----C--eEEEEECCCCce-----eeEe-----ecCCCeEEEEEecCCCEEEEEE
Q 008356          102 -D----K--KLYTYDPGSRRP-----SSCI-----TYEAPFSSLAFIDDDWILTAGT  141 (568)
Q Consensus       102 -D----G--tV~IWDlrt~~~-----v~~~-----~h~~~ItsLafsPdg~~LasGs  141 (568)
                       +    .  .|..+.......     ...+     ........|+|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence             1    1  133333322211     1111     1234567999999998766655

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.94  E-value=24  Score=34.18  Aligned_cols=168  Identities=8%  Similarity=-0.029  Sum_probs=96.2

Q ss_pred             cCCCCEEEEEECCCcEEEEECCC-----------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356            3 NCKDEHLASISLSGDLILHNLAS-----------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS   71 (568)
Q Consensus         3 SpdG~~LasGs~DG~V~VWDl~t-----------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~   71 (568)
                      ++...+++.|+.++ +.|..+..           .........   ..|..++|+.+   .|+.. .++.+..++.....
T Consensus        45 sn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i---p~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~  116 (381)
T d1xipa_          45 SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI---PDVIFVCFHGD---QVLVS-TRNALYSLDLEELS  116 (381)
T ss_dssp             ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC---TTEEEEEEETT---EEEEE-ESSEEEEEESSSTT
T ss_pred             eCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC---CCeEEEEeeCC---EEEEE-eCCCEEEEEeeccc
Confidence            34455677777664 56665321           111222221   24677888754   34443 45678888886644


Q ss_pred             ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE------eecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356           72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC------ITYEAPFSSLAFIDDDWILTAGTSNGR  145 (568)
Q Consensus        72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~------~~h~~~ItsLafsPdg~~LasGs~DG~  145 (568)
                      . ......-..++..+.++|.  .++....++.+.++++..++....      +...+...+++|++.|..++++..++ 
T Consensus       117 ~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-  192 (381)
T d1xipa_         117 E-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-  192 (381)
T ss_dssp             C-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-
T ss_pred             c-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-
Confidence            2 3333344567888888764  567778899999999988764332      22346678888888777777764332 


Q ss_pred             EEEE-ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356          146 VVFY-DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE  185 (568)
Q Consensus       146 V~VW-Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~  185 (568)
                      +.+- ++....   ..-........|.+|.|-.+..+++..
T Consensus       193 ~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         193 MEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            2221 221110   000001234568899998877766654

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.67  E-value=22  Score=33.49  Aligned_cols=196  Identities=9%  Similarity=0.094  Sum_probs=108.9

Q ss_pred             CCCCEEEEEECCCcEEEEECCC----CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE---CCCCC-----
Q 008356            4 CKDEHLASISLSGDLILHNLAS----GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD---TTGRS-----   71 (568)
Q Consensus         4 pdG~~LasGs~DG~V~VWDl~t----g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD---l~t~~-----   71 (568)
                      ++...+++-+.+|.|+-..+..    +..-..++  ..+.+..+..+...+ .|+.-+..|.++.-.   +....     
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k--~~D~v~~~~~~~t~d-~ll~fT~~Grvy~l~v~eiP~~~~~s~G   79 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK--DTDRLLAMLEMNTKD-VLLLFTNKGNYLYCPVHELPDIRWKDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC--TTCCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc--CCceEEEEEEEcCCC-EEEEEecCCEEEEEeeccCccccccccc
Confidence            5677889999999998766532    11111122  334454444444444 345557778766554   33211     


Q ss_pred             -ceeEEec-cCCCCeEE-EEEcC--CCCEEEEEeCCCeEEEEECCCC------cee--eEeecCCCeEEEEEecCCCEEE
Q 008356           72 -PKVSWLK-QHSAPTAG-ISFSS--DDKIIASVGLDKKLYTYDPGSR------RPS--SCITYEAPFSSLAFIDDDWILT  138 (568)
Q Consensus        72 -~~v~~l~-~H~~~Vts-lafsP--dg~~LaSgs~DGtV~IWDlrt~------~~v--~~~~h~~~ItsLafsPdg~~La  138 (568)
                       +....+. .....|.. +....  ...+|+..+..|.++..++..-      +.+  ..+.....+..+.+..+...++
T Consensus        80 ~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~  159 (323)
T d1wp5a_          80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF  159 (323)
T ss_dssp             EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred             ccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEE
Confidence             1111111 12334433 33333  4678999999999999986431      111  2234666777888887778899


Q ss_pred             EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356          139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP  208 (568)
Q Consensus       139 sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl  208 (568)
                      .++.+|.+..|+...-.    ...  .-...|..+.+.++...+....-..++..++..+..|..+.-.+
T Consensus       160 l~t~~G~~lrf~~~~vr----~~g--r~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~  223 (323)
T d1wp5a_         160 LVTHNGYALWFDESEVS----IVG--VRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKL  223 (323)
T ss_dssp             EEETTSEEEEEEGGGSC----BCC--SSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred             EEEecceeeEeeccccc----ccC--cccccccccccccccccchhhhccccccceeeeeeeheeecccc
Confidence            99999999999877531    111  12344666666555444432212223334444455666554433