Citrus Sinensis ID: 008358

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL
Secondary Structure (PSIPRED)
cHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHccccccccccccHHHHccccccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccHEEEEEEHHHHHHHHHHHHHEEHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccEEEEc
Coil and Loop (DISEMBL)
MASSIVEGAErdlekgiispqlsqksigessltpspspspssatapalvlsnsgkridqagKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDsqmvgnlsgaefdTEVAEIRSSVVNELLKYstkegltrknrsgfdplhiAAVQGHHAIVQVLLdhdpslsqttgpsnatplvsaaTRGHTAVVNELLskdgglleisrSNGKNALHFAARQGHVDVVKALLskdpqlarrtdkkgqTALHMAVKGQSCEVVKLLLEADAAIVMlpdkfgntalhvATRKKRTEIVTELLslpdtnvnaltrDHKTALDiaeglpsseeASEIKDCLARCGAvranelnqprdELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAsiftvpggdddngkAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKReknarmrsgsnswypsdysnseiDRIYAL
Flexible Loop (DISEMBL)
massivegaerdlekgiispqlsqksIGESSLTPSPSPSPSSATAPALVLsnsgkridqagKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKystkegltrknrSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEllslpdtnvnaltRDHKTALDIAEGLPSSEEASEIKDCLARCGAVranelnqprdelrKTVTQIKKDvhtqleqtrrtnknvhnISKELRKLHREGINNATNSVTVVAVLFATVAFASIftvpggdddnGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLvrgetkaekRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTyyvvkskrvrsirkreknarmrsgsnswypsdysnseidriyal
Low Complexity Region (SEG)
MASSIVEGAERDLEKGIISPQLSQKSIGEssltpspspspssatapalvlsNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGInnatnsvtvvavlfatvafaSIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYvvkskrvrsirkrekNARMRSGSNSWYPSDYSNSEIDRIYAL
Disordered region (IsUnstruct)
**************************************************************************DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD************************HTAVVNELLSKDGGLLEISR*NGKNALHFAARQGHVDVVKALL****************ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH*TAL****************DCLARCGAV**********************************************LHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSK*************************************
Disordered Region (DISOPRED)
MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVH*********************KLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRV***************************EIDRIYAL
Disordered Region (DISEMBL)
********AERDLEKGIISPQLS**********************PALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL**************AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG*********IKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRV******************WYPSDYSNSEIDRIYAL
Disordered Region (DISPRO)
MAS****GAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIR*********************NSEIDRIYAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	568	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	yes	no	0.991	0.954	0.787	0.0
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.818	0.874	0.416	1e-97
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.802	0.870	0.417	1e-92
Q9ULH0	1771	Kinase D-interacting subs	yes	no	0.392	0.125	0.346	8e-20
Q9EQG6	1762	Kinase D-interacting subs	yes	no	0.392	0.126	0.346	2e-19
Q7T163	1672	Kinase D-interacting subs	yes	no	0.413	0.140	0.334	5e-18
Q804S5	1030	E3 ubiquitin-protein liga	yes	no	0.492	0.271	0.310	5e-18
Q80YE7	1442	Death-associated protein	no	no	0.323	0.127	0.336	1e-16
Q86YT6	1006	E3 ubiquitin-protein liga	no	no	0.461	0.260	0.298	2e-16
Q6GNY1	1011	E3 ubiquitin-protein liga	N/A	no	0.492	0.276	0.291	2e-16

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/592 (78%), Positives = 512/592 (86%), Gaps = 29/592 (4%)

Query: 2   ASSIVEGAERDLEKG-IISPQLSQKSIGESSLTPSPSPSPS-SATAPALVLSNSGKRIDQ 59
           ASS V+G ERD+EKG +I  Q S+       + PSP+PSPS +ATAPALVLSNSGKR+DQ
Sbjct: 3   ASSYVDG-ERDMEKGGMILLQSSENQ--NPMIDPSPTPSPSATATAPALVLSNSGKRMDQ 59

Query: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS 119
           AGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+
Sbjct: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 119

Query: 120 SVVNE-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
           S+VNE                       LLKYS++E + +KNRSG+DPLHIAA+QGHHAI
Sbjct: 120 SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 179

Query: 157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
           V+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH A
Sbjct: 180 VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 239

Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
           ARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK 
Sbjct: 240 ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 299

Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 336
            NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR
Sbjct: 300 CNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLAR 359

Query: 337 CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNAT 396
            GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGINNAT
Sbjct: 360 SGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNAT 419

Query: 397 NSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQ 456
           NSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKIFFIFNA+ALFTSLAVVVVQ
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479

Query: 457 ITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIM 516
           ITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IM
Sbjct: 480 ITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIM 539

Query: 517 AGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 568
           AGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct: 540 AGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  357 bits (916), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 305/509 (59%), Gaps = 44/509 (8%)

Query: 100 QMVGNLSGAEFDTE------VAEIRS-------------------SVVNELLKYSTKEGL 134
           Q+V NL+G E   E      VAE+ S                    +   L+++S+ E +
Sbjct: 28  QLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETV 87

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             +++S  +  H+AA +GH  IV+ LL   P L +    SN +PL +AA + H  +VN +
Sbjct: 88  KIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAM 147

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
           L  D     I R NGK +LH A R G + +VKAL+ KD  +    DKKGQTALHMAVKG+
Sbjct: 148 LDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGR 207

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
           S EVV+ +L+AD  I+   D+ GNTALH+ATRK R +I + LL+     VNA+    +TA
Sbjct: 208 SLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETA 267

Query: 315 LDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE---LRKTVTQIKKDVHTQLEQTR 371
           +D+A+ L  SE A EI + L   GA     + +  DE   L++ V+ IK +V +QL Q  
Sbjct: 268 MDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEVQSQLLQNE 326

Query: 372 RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGG----DDDNGKA 427
           +TN+ V  I+KELRKLHRE + N TNS+TVVAVLFA++AF +IF +PG         G+A
Sbjct: 327 KTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQA 386

Query: 428 VVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSV 487
            +  R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  CT  
Sbjct: 387 NIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFG 446

Query: 488 AFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRS 547
           AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+V + +R RS    ++  R+R 
Sbjct: 447 AFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFR-QRFRSGNDSQR--RIRR 503

Query: 548 GSNSW-------YPSDYSN-SEIDRIYAL 568
           GS+         + SD+ + S+ ++I AL
Sbjct: 504 GSSKSFSWSYSHHVSDFEDESDFEKIIAL 532

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  341 bits (874), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 211/505 (41%), Positives = 298/505 (59%), Gaps = 49/505 (9%)

Query: 62  KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS- 120
           KK   KQ+T R +DT LH A + G    +         +M+G   G E    +AE   S 
Sbjct: 5   KKTMTKQMTARRDDTPLHTAVREGKTDLL--------LEMIGEHDGVELKELLAEQNQSG 56

Query: 121 --------------VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 166
                         +V  L+K+S       K ++GFD  HIAA  G+  ++ VL++ +P 
Sbjct: 57  ETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPE 116

Query: 167 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 226
           LS T   S  T L +AA++GH  +V  LL K   L  I+RSNGK ALH AAR GH  +VK
Sbjct: 117 LSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVK 176

Query: 227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 286
            L+ K   +  R DKKGQTALHMAVKGQ+ E+V +L+EAD +++   D  GNT LH+A R
Sbjct: 177 KLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVR 236

Query: 287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAE--GLPSSEEASEIKDCLARCG-----A 339
           K R EIV  +L   + +  A+ +  +TALDIAE  GL       EI   L + G     +
Sbjct: 237 KNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGL------HEIVPLLQKIGMQNARS 290

Query: 340 VRANELNQPRD---ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNAT 396
           ++  E  +P     +L++TV++I  +VHTQLEQT RT + +  I+K + K+H EG+NNA 
Sbjct: 291 IKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAI 350

Query: 397 NSVTVVAVLFATVAFASIFTVPGGDDDN----------GKAVVVRRASFKIFFIFNAIAL 446
           NS T+VA+L ATVAFA+IF VPG   D+          G+A    R  F IF +F++ AL
Sbjct: 351 NSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFAL 410

Query: 447 FTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAI 506
           F SLAVVVVQ ++V  E +A+K+++ +INKLMW+A +  SVAF++ S++VVG + +  A+
Sbjct: 411 FISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAV 470

Query: 507 LVTVVGGLIMAGVLGTMTYYVVKSK 531
            VT +G LIM   LGTM Y+V+ ++
Sbjct: 471 GVTAIGALIMVSTLGTMCYWVIANR 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score = 99.0 bits (245), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 134/251 (53%), Gaps = 28/251 (11%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS------VVNELLKYS 129
           T L +AA++G+L  VK+++     +   N +  + D   A I +S      +V ELLK  
Sbjct: 40  TPLMIAAEQGNLEIVKELI-----KNGANCNLEDLDNWTALISASKEGHVHIVEELLKCG 94

Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGH 187
               L  ++  G+  L  A  +G   +V++LL H  +PS+   TG  +  P++ AA RGH
Sbjct: 95  VN--LEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSV---TGLYSVYPIIWAAGRGH 149

Query: 188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG---Q 244
             +V+ LL ++G  +  S   G   L +AAR+GH++ VK LL+    +    D++G    
Sbjct: 150 ADIVH-LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA----MGADVDQEGANSM 204

Query: 245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304
           TAL +AVKG   + VK +L+ +   V L DK GNTAL +A+++  TEIV +LL    T V
Sbjct: 205 TALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHTEIVQDLLDA-GTYV 262

Query: 305 NALTRDHKTAL 315
           N   R   T L
Sbjct: 263 NIPDRSGDTVL 273

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 134/251 (53%), Gaps = 28/251 (11%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS------VVNELLKYS 129
           T L LAA++G++  VK++L     +   N +  + D   A I +S      +V ELLK  
Sbjct: 40  TPLMLAAEQGNVEIVKELL-----KNGANCNLEDLDNWTALISASKEGHIHIVEELLK-- 92

Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGH 187
           +   L  ++  G+  L  A  +G   +V++LL H  +PS+   TG  +  P++ AA RGH
Sbjct: 93  SGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSV---TGLYSVYPIIWAAGRGH 149

Query: 188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG---Q 244
             +V+ LL ++G  +  S   G   L +AAR+GH++ VK LL+    +    D++G    
Sbjct: 150 ADIVH-LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA----MGADVDQEGANSM 204

Query: 245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304
           TAL +AVKG   + VK +L+ +   V L DK GNTAL +A+++   EIV +LL    T V
Sbjct: 205 TALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHIEIVQDLLDA-GTYV 262

Query: 305 NALTRDHKTAL 315
           N   R   T L
Sbjct: 263 NIPDRSGDTVL 273

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 135/260 (51%), Gaps = 25/260 (9%)

Query: 67  KQVTGRHND--TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS---- 120
           K+V GR ++  T L LA+++G L  V++++     +   N++  + D   A I ++    
Sbjct: 29  KEVDGRSDNGQTPLMLASEQGSLEIVQELI-----RRGANVNLDDVDCWSALISAAKEGH 83

Query: 121 --VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
             VV ELL+ S    +  ++  G+  L  A+ +G   +  VLL++  + + T    +  P
Sbjct: 84  VEVVKELLENSAY--IEHRDMGGWTALTWASYKGRVEVATVLLENGANPNTTGQQYSVYP 141

Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           ++ AA RGH  +V +LL + G  +  S   G   L +AAR+GH D V  LL     +   
Sbjct: 142 IIWAAGRGHAEIV-KLLLEHGAKVNCSDKYGTTPLIWAARKGHYDCVMHLLENGADV--- 197

Query: 239 TDKKG---QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295
            D++G    TAL +AVKG   EVVK LL+ +  + M  DK GNTAL +A ++  TEIV +
Sbjct: 198 -DQEGANSMTALIVAVKGGYTEVVKELLKRNPNVNMT-DKDGNTALMIAAKEGYTEIVQD 255

Query: 296 LLSLPDTNVNALTRDHKTAL 315
           LL    T VN   R   T L
Sbjct: 256 LLD-AGTYVNIPDRSGDTVL 274

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 150/322 (46%), Gaps = 42/322 (13%)

Query: 30  SSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGA 89
           +S T +P+     A A + V + SG+R+ Q  KK +  Q +G  N+ EL  AA  GDL  
Sbjct: 388 TSWTYNPAAVTKVAPAGSAVTNASGERLSQLLKKLFETQESGDINE-ELVKAAANGDLAK 446

Query: 90  VKQILYGIDSQMVGNLSG-AEFDTEVAEIRSSVVNELLKYST------KEG--------- 133
           V+ IL   D  + G  +G              V+  LLK+S       K+G         
Sbjct: 447 VEDILKRPDVDVNGQCAGHTAMQAASQNGHVDVLKLLLKHSVDLEAEDKDGDRAVHHASF 506

Query: 134 ----------------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSN 175
                           L  +N+    PLHIA  +GH  +V+ LLD    PSL  + G   
Sbjct: 507 GDEGSVIEVLHRGGADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGD-- 564

Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
            TPL  A ++    +++ LL   G  + I+ +NG NALH AA +G+   ++ LLSK P+ 
Sbjct: 565 -TPLHDAISKKRDDMLSVLLEA-GADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRP 622

Query: 236 ARRTDKK--GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
               +KK  G TALH+A      EV +LL+    A + + +    TALH+A  ++ T+IV
Sbjct: 623 WIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDVQNVNQQTALHLAVERQHTQIV 682

Query: 294 TELLSLPDTNVNALTRDHKTAL 315
             LL   +  ++   +D  T L
Sbjct: 683 -RLLVRAEAKLDVQDKDGDTPL 703

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 9/193 (4%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH AA  G++++ + L +   +++        TPL++A+ RG+  +V E L++ G  L 
Sbjct: 481 PLHCAAWHGYYSVAKALCEVGCNVN-IKNREGETPLLTASARGYHDIV-ECLAEHGADLN 538

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
            S  +G  ALH A R+  ++V+K LL          D+ G T LH+A K  S  +V  L 
Sbjct: 539 ASDKDGHIALHLAVRRCQMEVIKTLLGHG-SFVDFQDRHGNTPLHVACKDGSAPIVVALC 597

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS 323
           EA   +  + +K+G T LH+A      ++V   L L   NV ALT D KTA D+A+    
Sbjct: 598 EASCNLD-ISNKYGRTPLHLAANNGILDVV-RYLCLMGANVEALTSDGKTAEDLAK---- 651

Query: 324 SEEASEIKDCLAR 336
           +E+   +   LAR
Sbjct: 652 AEQHEHVAGLLAR 664

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 43/305 (14%)

Query: 30  SSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGA 89
           +S T +P+     A+A + + + SG+R+ Q  KK +  Q +G  N+ EL  AA  GD+  
Sbjct: 388 TSWTYNPAAVSKVASAGSAISNASGERLSQLLKKLFETQESGDLNE-ELVKAAANGDVAK 446

Query: 90  VKQILYGIDSQMVGNLSG---------------------AEFDTEVAEIRSS-------- 120
           V+ +L   D  + G  +G                        D E  +            
Sbjct: 447 VEDLLKRPDVDVNGQCAGHTAMQAASQNGHVDILKLLLKQNVDVEAEDKDGDRAVHHAAF 506

Query: 121 ----VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPS 174
                V E+L   + + L  +N+    PLHIA  +GH  +V+ LLD    PSL  + G  
Sbjct: 507 GDEGAVIEVLHRGSAD-LNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGD- 564

Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
             TPL  A ++    ++  LL   G  + I+ +NG NALH AA +G+   ++ LLSK P+
Sbjct: 565 --TPLHDAISKKRDDILAVLLEA-GADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPR 621

Query: 235 LARRTDKK--GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
                +KK  G TALH+A      EV +LL+    A + + +    TALH+A  ++ T+I
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQI 681

Query: 293 VTELL 297
           V  L+
Sbjct: 682 VRLLV 686

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis (By similarity). Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 149/322 (46%), Gaps = 42/322 (13%)

Query: 30  SSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGA 89
           +S T +P+     A+  + + + +G+R+ Q  KK +  Q +G  N+ EL  AA  GD+  
Sbjct: 388 TSWTYNPAAVSRVASVGSAISNATGERLSQLLKKLFETQESGDLNE-ELVKAAANGDVAK 446

Query: 90  VKQILYGIDSQMVGNLSG-AEFDTEVAEIRSSVVNELLKYST------KEG--------- 133
           V  +L   D  + G  +G              ++  LLK+S       K+G         
Sbjct: 447 VDDLLKRQDVDVNGQCAGHTAMQAASQNGHVDILKLLLKHSVDVEAEDKDGDRAVHHAAF 506

Query: 134 ----------------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSN 175
                           L  +N+    PLHIA  +GH  +V+ LLD    PSL  + G   
Sbjct: 507 GDEGTVIEVLQRGGADLNARNKRRQTPLHIAVNKGHLQVVKKLLDFSCHPSLQDSEGD-- 564

Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
            TPL  A ++    ++  LL   G  + I+ +NG NALH AA +G+   ++ LLSK P+ 
Sbjct: 565 -TPLHDAISKKRDDILAVLLEA-GADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRP 622

Query: 236 ARRTDKK--GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
               +KK  G TALH+A      EV +LL+   +A + + +    TALH+A  ++ T+IV
Sbjct: 623 WIVDEKKDDGYTALHLAALNNHVEVAELLVHQGSANLDIQNVNQQTALHLAVERQHTQIV 682

Query: 294 TELLSLPDTNVNALTRDHKTAL 315
             LL   +  ++   +D  T L
Sbjct: 683 -RLLVRAEAKLDIQDKDGDTPL 703

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
224100903	588	predicted protein [Populus trichocarpa]	0.992	0.959	0.810	0.0
255571695	570	ankyrin repeat-containing protein, putat	0.915	0.912	0.862	0.0
15230470	590	ankyrin repeats-containing protein [Arab	0.991	0.954	0.787	0.0
356576855	585	PREDICTED: ankyrin repeat-containing pro	0.917	0.890	0.801	0.0
15795155	1100	ankyrin-like protein [Arabidopsis thalia	0.991	0.511	0.755	0.0
449464198	590	PREDICTED: ankyrin repeat-containing pro	0.989	0.952	0.781	0.0
225448809	589	PREDICTED: ankyrin repeat-containing pro	0.992	0.957	0.768	0.0
128168562	596	IGN1 [Lotus japonicus] gi|128168568|dbj|	0.957	0.912	0.753	0.0
356536512	592	PREDICTED: ankyrin repeat-containing pro	0.917	0.880	0.791	0.0
225439834	638	PREDICTED: ankyrin repeat-containing pro	0.985	0.877	0.716	0.0

>gi|224100903|ref|XP_002312060.1| predicted protein [Populus trichocarpa] gi|222851880|gb|EEE89427.1| predicted protein [Populus trichocarpa]

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/592 (81%), Positives = 520/592 (87%), Gaps = 28/592 (4%)

Query: 1   MASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQA 60
           MAS + EG+ERDLEKG++ PQL+Q  + + S         S++TAPALVLSNSGKRIDQA
Sbjct: 1   MASPMEEGSERDLEKGLVQPQLNQNPLTDPS---PTPSPSSTSTAPALVLSNSGKRIDQA 57

Query: 61  GKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSS 120
           GKKKYVKQVTGRHNDTELHLAAQRG+L  V+ IL  I+SQMVG LSGA+FDTEVAEIR+S
Sbjct: 58  GKKKYVKQVTGRHNDTELHLAAQRGNLADVQHILNDINSQMVGTLSGADFDTEVAEIRAS 117

Query: 121 VVNE-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 157
           VVNE                       LLKYS KE LTRKNRSG+DPLHIAAVQGHHAIV
Sbjct: 118 VVNEVNELGETALFTAADKGHLEVVKELLKYSNKECLTRKNRSGYDPLHIAAVQGHHAIV 177

Query: 158 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 217
           QVLLDHDPSLSQT GPSNATPLVSAATRGHTAVV ELLSKDG LLEISRSNGKNALH AA
Sbjct: 178 QVLLDHDPSLSQTHGPSNATPLVSAATRGHTAVVIELLSKDGSLLEISRSNGKNALHLAA 237

Query: 218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 277
           RQGHVD+VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL+ADAAIVMLPDKFG
Sbjct: 238 RQGHVDIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLDADAAIVMLPDKFG 297

Query: 278 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC 337
           NTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDIAE L  SEE+S+IK+CL R 
Sbjct: 298 NTALHVATRKKRAEIVNELLLLPDTNVNALTRDHKTALDIAEELVLSEESSDIKECLYRY 357

Query: 338 GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATN 397
           GA+RANELNQPRDELRKTVTQIK DVHTQLEQTRRTNKNVHNISKELRKLHREGINNATN
Sbjct: 358 GALRANELNQPRDELRKTVTQIKNDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATN 417

Query: 398 SVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQI 457
           SVTVVAVLFATVAFA+IFTVPGGD ++G AVVV   SFKIFFIFNAIALFTSLAVVVVQI
Sbjct: 418 SVTVVAVLFATVAFAAIFTVPGGDLNSGMAVVVSHTSFKIFFIFNAIALFTSLAVVVVQI 477

Query: 458 TLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMA 517
           TLVRGETKAE+RVVEVINKLMWLASVCTSVAF+AS+YIVVGR HEWAA+L+T+VGG+IM 
Sbjct: 478 TLVRGETKAERRVVEVINKLMWLASVCTSVAFMASAYIVVGRTHEWAAVLITIVGGVIMT 537

Query: 518 GVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNS-WYPSDYSNSEIDRIYAL 568
            VLGTMTYYVVKSKR+RS+RKR+K++R RSGSNS  + S++SNSE+DRIYAL
Sbjct: 538 AVLGTMTYYVVKSKRIRSMRKRDKHSR-RSGSNSGHHNSEFSNSEVDRIYAL 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571695|ref|XP_002526791.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223533867|gb|EEF35597.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/544 (86%), Positives = 492/544 (90%), Gaps = 24/544 (4%)

Query: 48  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG 107
           LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQ+GDL AVKQIL  I+SQ+VG LSG
Sbjct: 28  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQQGDLAAVKQILNDINSQLVGTLSG 87

Query: 108 AEFDTEVAEIRSSVVNE-----------------------LLKYSTKEGLTRKNRSGFDP 144
            EFD EV EIR+SVVNE                       LLKYS+KE +TRKNRS FD 
Sbjct: 88  EEFDAEVVEIRASVVNEVNELGETALFTAADKGHLEVVKELLKYSSKECITRKNRSNFDA 147

Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 204
           LHIAA+QGHH IVQVLLDHDPSLS+T GPSNATPLVSAATRGHTAVVNELLSKDG LLEI
Sbjct: 148 LHIAAMQGHHGIVQVLLDHDPSLSRTYGPSNATPLVSAATRGHTAVVNELLSKDGSLLEI 207

Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
           SRSNGKNALH AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE
Sbjct: 208 SRSNGKNALHLAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 267

Query: 265 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 324
           ADAAIVMLPDKFG TALHVATRKKR EIV ELL LPDTNVNALTR+HKTALDIAE L  S
Sbjct: 268 ADAAIVMLPDKFGYTALHVATRKKRVEIVNELLLLPDTNVNALTREHKTALDIAEELTLS 327

Query: 325 EEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKEL 384
           EE+SEIK+CL R GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR+TNKNVHNISKEL
Sbjct: 328 EESSEIKECLCRYGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRKTNKNVHNISKEL 387

Query: 385 RKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAI 444
           RKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGDD+NG AVVV  ASFKIFFIFNAI
Sbjct: 388 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDNNGIAVVVGHASFKIFFIFNAI 447

Query: 445 ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWA 504
           ALFTSLAVVVVQITLVRGETKAE+RVVEVINKLMWLASVCTSVAFIASSYIVVGR+HEWA
Sbjct: 448 ALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFIASSYIVVGRKHEWA 507

Query: 505 AILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDR 564
           A+LVTVVGG+IMAGVLGTMTYYVVKSKR+RS+RKREK+AR RSGSNSW  SD+SNSE+DR
Sbjct: 508 AVLVTVVGGVIMAGVLGTMTYYVVKSKRIRSMRKREKSAR-RSGSNSWQHSDFSNSEVDR 566

Query: 565 IYAL 568
           IYAL
Sbjct: 567 IYAL 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230470|ref|NP_187842.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|75308849|sp|Q9C7A2.1|Y3236_ARATH RecName: Full=Ankyrin repeat-containing protein At3g12360 gi|12321945|gb|AAG51002.1|AC069474_1 ankyrin-like protein; 93648-91299 [Arabidopsis thaliana] gi|332641667|gb|AEE75188.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/592 (78%), Positives = 512/592 (86%), Gaps = 29/592 (4%)

Query: 2   ASSIVEGAERDLEKG-IISPQLSQKSIGESSLTPSPSPSPS-SATAPALVLSNSGKRIDQ 59
           ASS V+G ERD+EKG +I  Q S+       + PSP+PSPS +ATAPALVLSNSGKR+DQ
Sbjct: 3   ASSYVDG-ERDMEKGGMILLQSSENQ--NPMIDPSPTPSPSATATAPALVLSNSGKRMDQ 59

Query: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS 119
           AGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+
Sbjct: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 119

Query: 120 SVVNE-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
           S+VNE                       LLKYS++E + +KNRSG+DPLHIAA+QGHHAI
Sbjct: 120 SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 179

Query: 157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
           V+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH A
Sbjct: 180 VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 239

Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
           ARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK 
Sbjct: 240 ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 299

Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 336
            NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR
Sbjct: 300 CNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLAR 359

Query: 337 CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNAT 396
            GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGINNAT
Sbjct: 360 SGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNAT 419

Query: 397 NSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQ 456
           NSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKIFFIFNA+ALFTSLAVVVVQ
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479

Query: 457 ITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIM 516
           ITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IM
Sbjct: 480 ITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIM 539

Query: 517 AGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 568
           AGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct: 540 AGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576855|ref|XP_003556545.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/548 (80%), Positives = 487/548 (88%), Gaps = 27/548 (4%)

Query: 48  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG 107
           LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGD+GAV+QIL  +DSQ++  LSG
Sbjct: 38  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILEDVDSQIMRTLSG 97

Query: 108 AEFDT----EVAEIRSSVVNE-----------------------LLKYSTKEGLTRKNRS 140
            + D     E+AE+R+ +VNE                       LL YS  + +++KNRS
Sbjct: 98  GDDDVDLNAEIAEVRACLVNEENEPGETPLFTAAEKGHLDVVKELLNYSNAQTVSKKNRS 157

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
           GFDPLHIAA QGHH+IVQVLLD++P LS+T GPSN+TPL++AATRGHT VVNELLSKD  
Sbjct: 158 GFDPLHIAASQGHHSIVQVLLDYNPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCS 217

Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
           LLEI+RSNGKNALH AARQGHV++VKALLSKDPQLARRTDKKGQTALHMAVKGQSC+VVK
Sbjct: 218 LLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVK 277

Query: 261 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
           LLLEADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDIAE 
Sbjct: 278 LLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAEN 337

Query: 321 LPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNI 380
           LP SEEAS+IKDCL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNVHNI
Sbjct: 338 LPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNI 397

Query: 381 SKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFI 440
           SKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGDDD+G AVV   A+FKIFF+
Sbjct: 398 SKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDDDGSAVVAAYAAFKIFFV 457

Query: 441 FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRR 500
           FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGR+
Sbjct: 458 FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRK 517

Query: 501 HEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNS 560
           ++WAAILVT+VGG+I++GV+GTMTYYVV+SKR RS+RK+EK A  RSGSNSW+ S++SNS
Sbjct: 518 NKWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWHHSEFSNS 577

Query: 561 EIDRIYAL 568
           E+DRIYAL
Sbjct: 578 EVDRIYAL 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15795155|dbj|BAB03143.1| ankyrin-like protein [Arabidopsis thaliana]

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/617 (75%), Positives = 512/617 (82%), Gaps = 54/617 (8%)

Query: 2    ASSIVEGAERDLEKG-IISPQLSQKSIGESSLTPSPSPSPS-SATAPALVLSNSGKRIDQ 59
            ASS V+G ERD+EKG +I  Q S+       + PSP+PSPS +ATAPALVLSNSGKR+DQ
Sbjct: 488  ASSYVDG-ERDMEKGGMILLQSSENQ--NPMIDPSPTPSPSATATAPALVLSNSGKRMDQ 544

Query: 60   AGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRS 119
            AGKKKYVKQVTGRHNDTELHLAAQRGDL AV+QIL  I+SQM G LSG EFD EVAEIR+
Sbjct: 545  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 604

Query: 120  SVVNE-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
            S+VNE                       LLKYS++E + +KNRSG+DPLHIAA+QGHHAI
Sbjct: 605  SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 664

Query: 157  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
            V+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH A
Sbjct: 665  VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 724

Query: 217  ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
            ARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK 
Sbjct: 725  ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 784

Query: 277  GNTALHVATRKKRTE-------------------------IVTELLSLPDTNVNALTRDH 311
             NTALHVATRKKR E                         IV  LLSLPDTN N LTRDH
Sbjct: 785  CNTALHVATRKKRAEVCITLIVWFILRFLIGSSHFGIYLQIVELLLSLPDTNANTLTRDH 844

Query: 312  KTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR 371
            KTALDIAEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+
Sbjct: 845  KTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTK 904

Query: 372  RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVR 431
            RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV 
Sbjct: 905  RTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVG 964

Query: 432  RASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIA 491
            RASFKIFFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+A
Sbjct: 965  RASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLA 1024

Query: 492  SSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNS 551
            SSYIVVGR++EWAA LVTVVGG+IMAGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNS
Sbjct: 1025 SSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNS 1083

Query: 552  WYPSDYSNSEIDRIYAL 568
            W+ SD+SNSE+D I+A+
Sbjct: 1084 WHHSDFSNSEVDPIFAI 1100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464198|ref|XP_004149816.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus] gi|449518239|ref|XP_004166150.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus]

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/590 (78%), Positives = 498/590 (84%), Gaps = 28/590 (4%)

Query: 2   ASSIVEGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAG 61
           A  +V+GA  DLEKGI+S   +Q  + E           S+ATAPALVLSNSGKR+DQAG
Sbjct: 6   AQVLVDGAG-DLEKGILSLSSNQNPLAE---LSPSPSPSSTATAPALVLSNSGKRMDQAG 61

Query: 62  KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSV 121
           KKKYVKQVTGRHNDTELHLAAQRGDL AVKQIL  IDSQMV NLSGA+FD EVAE+RS V
Sbjct: 62  KKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIDSQMVRNLSGADFDAEVAEVRSLV 121

Query: 122 VNE-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 158
           VNE                       LLKYS KE LT KNRS FDPLHIAA QGHHAIVQ
Sbjct: 122 VNEVNELGETALFTAAERGHIEVVKELLKYSNKETLTTKNRSAFDPLHIAASQGHHAIVQ 181

Query: 159 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218
           VLL+H+PSLSQT GPSNATPL++AA RGHTAVV ELL+KD  LLEI RSNGKNALHFA R
Sbjct: 182 VLLEHEPSLSQTFGPSNATPLITAAARGHTAVVEELLNKDRNLLEICRSNGKNALHFAVR 241

Query: 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278
            GH ++VK LLSKDP LAR+ DKKGQTALHMAVKGQS +VVKLLLEAD AIVMLPDKFGN
Sbjct: 242 PGHTEIVKLLLSKDPHLARKNDKKGQTALHMAVKGQSRDVVKLLLEADPAIVMLPDKFGN 301

Query: 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 338
           TALHVATRKKR EIV ELL LPDTNVNAL+RDHKTA DIAE LP SEE+SEIKD L+R G
Sbjct: 302 TALHVATRKKRVEIVQELLLLPDTNVNALSRDHKTAFDIAEELPLSEESSEIKDSLSRYG 361

Query: 339 AVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNS 398
           AVRANELNQPRDELR TVTQIKKDVHTQLEQTR+TNKNVHNISKELRKLHREGINNATNS
Sbjct: 362 AVRANELNQPRDELRNTVTQIKKDVHTQLEQTRKTNKNVHNISKELRKLHREGINNATNS 421

Query: 399 VTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQIT 458
           VTVVAVLFATVAFA+IFTVPGGD D G AVVV   SFKIFFIFNAIALFTSLAVVVVQIT
Sbjct: 422 VTVVAVLFATVAFAAIFTVPGGDTDQGTAVVVGTISFKIFFIFNAIALFTSLAVVVVQIT 481

Query: 459 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAG 518
           LVRGETKAE+RVVE+INKLMWLASVCTSVAF+ASSYIVVG ++ WAA ++TVVGG+IMAG
Sbjct: 482 LVRGETKAERRVVEIINKLMWLASVCTSVAFMASSYIVVGHKYRWAAAVITVVGGVIMAG 541

Query: 519 VLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 568
           VLGTMTYYVVKSK  RS+RK+EK+ R RSGSNSW+ SD+SNSE+DRIYAL
Sbjct: 542 VLGTMTYYVVKSKSRRSVRKKEKSNR-RSGSNSWHHSDFSNSEVDRIYAL 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448809|ref|XP_002282204.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera] gi|297736432|emb|CBI25303.3| unnamed protein product [Vitis vinifera]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/593 (76%), Positives = 502/593 (84%), Gaps = 29/593 (4%)

Query: 1   MASSIV--EGAERDLEKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRID 58
           MAS +   E  ERDLEKG+++P  +Q      +         S+A+APALVLS+S KRID
Sbjct: 1   MASPVTVKEEMERDLEKGLVTPAPNQNP---LAEPSPSPSPSSTASAPALVLSSSSKRID 57

Query: 59  QAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIR 118
           QAGKKKYVKQVTGRHNDTELHLAAQRGDL AVKQIL  I SQ+   +SGAEF+ EVAE+R
Sbjct: 58  QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIHSQIGDTMSGAEFEAEVAEVR 117

Query: 119 SSVVNE-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 155
           + +VNE                       LLKYS +E ++RKNRS F PLHIAA QGHHA
Sbjct: 118 TLMVNEVNELGETALFTAAEKGHIDVVKELLKYSNRESISRKNRSQFGPLHIAAAQGHHA 177

Query: 156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 215
           IVQVLLD+DP LS+T GPSNATPLVSAA+RGHTAVV ELLSKD GLLEI++SNGKNALH 
Sbjct: 178 IVQVLLDYDPELSKTIGPSNATPLVSAASRGHTAVVIELLSKDCGLLEIAKSNGKNALHL 237

Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AARQGHVD+V+ALL KDPQLARRTDKKGQTALHMAVKG SCEVVKLLL ADAAIVMLPDK
Sbjct: 238 AARQGHVDIVEALLEKDPQLARRTDKKGQTALHMAVKGVSCEVVKLLLNADAAIVMLPDK 297

Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
            GNTALHVATRKKR EIV ELL LPD NVNAL RDHKT+LDIAE L  SEEASEIKDCL 
Sbjct: 298 QGNTALHVATRKKRAEIVNELLRLPDANVNALNRDHKTSLDIAEDLSHSEEASEIKDCLI 357

Query: 336 RCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNA 395
           R GA++ANELNQPRDELR TVTQIK+DVHTQLEQTRRTNKNVHNISKELRKLHREGINNA
Sbjct: 358 RYGAIKANELNQPRDELRNTVTQIKRDVHTQLEQTRRTNKNVHNISKELRKLHREGINNA 417

Query: 396 TNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVV 455
           TNSVTVVAVLFATVAFA+IFTVPGGD+ +G  VVV+ ASFKIFFIFNA+ALFTSLAVVVV
Sbjct: 418 TNSVTVVAVLFATVAFAAIFTVPGGDNPDGTGVVVKSASFKIFFIFNALALFTSLAVVVV 477

Query: 456 QITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLI 515
           QITLVRGETKAE+ VV VINKLMWLASVCTSVAFIASSYIVVGR +EWAAI VTVVGG+I
Sbjct: 478 QITLVRGETKAERNVVVVINKLMWLASVCTSVAFIASSYIVVGRHNEWAAIFVTVVGGVI 537

Query: 516 MAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 568
           MAGVLGTMTYYVVKSKR+RS+R+++KNAR RSGSNSW+ S++S+SEIDRIYAL
Sbjct: 538 MAGVLGTMTYYVVKSKRIRSVRRKDKNAR-RSGSNSWHHSEFSDSEIDRIYAL 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|128168562|dbj|BAF48666.1| IGN1 [Lotus japonicus] gi|128168568|dbj|BAF48667.1| IGN1 [Lotus japonicus]

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/588 (75%), Positives = 495/588 (84%), Gaps = 44/588 (7%)

Query: 22  LSQKSIGESSLTPSPSPSPSS----------ATAPALVLSNSGKRIDQAGKKKYVKQVTG 71
           L Q+ I +     +P  +P S          +TAPALVLSNSGKRIDQAGKKKYVKQVTG
Sbjct: 12  LGQRDIEKEKAAMTPPQTPLSEISPSPSPSSSTAPALVLSNSGKRIDQAGKKKYVKQVTG 71

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN--------LSGAEFDTEVAEIRSSVVN 123
           RHNDTELHLAAQRGD+GAV+QIL  IDSQ++G             + ++E+AE+R+ VVN
Sbjct: 72  RHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTHGGGGGGDGDVVDLNSEIAEVRACVVN 131

Query: 124 E-----------------------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVL 160
           E                       LLK+S    L +KNRSGFDPLHIAA QGHHAIVQVL
Sbjct: 132 EENELGETALFTAAERGHLDVVKELLKHSN---LKKKNRSGFDPLHIAASQGHHAIVQVL 188

Query: 161 LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 220
           LD+DP LS+T GPSNATPL++AATRGH  VVNELLSKD  LLEI+RSNGK+ LH AARQG
Sbjct: 189 LDYDPGLSKTIGPSNATPLITAATRGHVEVVNELLSKDCSLLEIARSNGKSPLHLAARQG 248

Query: 221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA 280
           HV++V+ALLSKDPQLARRTDKKGQTALHMAVKGQS +VVKLLL+ADAAIVMLPDKFGNTA
Sbjct: 249 HVEIVRALLSKDPQLARRTDKKGQTALHMAVKGQSADVVKLLLDADAAIVMLPDKFGNTA 308

Query: 281 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV 340
           LHVATRKKR EIV ELL+LPDTNVNALTRDHKTALDIAE LP SEEAS+IKDCL+R GA+
Sbjct: 309 LHVATRKKRVEIVNELLNLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGAL 368

Query: 341 RANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVT 400
           RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNVHNISKELRKLHREGINNATNSVT
Sbjct: 369 RANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVT 428

Query: 401 VVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLV 460
           VVAVLFATVAFA+IFTVPGGD+D+G  VV   ++FKIFFIFNAIALFTSLAVVVVQITLV
Sbjct: 429 VVAVLFATVAFAAIFTVPGGDNDDGSGVVAAYSAFKIFFIFNAIALFTSLAVVVVQITLV 488

Query: 461 RGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVL 520
           RGETKAEKRVVEVINKLMWLASVCTSVAFIA+SYIVVGR++EWAAILVTVVGG+I++GV+
Sbjct: 489 RGETKAEKRVVEVINKLMWLASVCTSVAFIAASYIVVGRKNEWAAILVTVVGGVIISGVI 548

Query: 521 GTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 568
           GTMTYYVV+SKR RS+RK+EK    RSGSNSW+ S++SNSE+D IYAL
Sbjct: 549 GTMTYYVVRSKRSRSMRKKEKQQARRSGSNSWHHSEFSNSEVDPIYAL 596

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536512|ref|XP_003536781.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/548 (79%), Positives = 482/548 (87%), Gaps = 27/548 (4%)

Query: 48  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG 107
           LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGD+GAV+QIL  +DSQ++G LSG
Sbjct: 45  LVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILEDVDSQIMGTLSG 104

Query: 108 A----EFDTEVAEIRSS-----------------------VVNELLKYSTKEGLTRKNRS 140
                + + E+AE+R+                        VV ELL YST + +++KNRS
Sbjct: 105 DGDEDDLNAEIAEVRACLANEENELGETPLFTAAEKGHLDVVKELLNYSTAQTVSKKNRS 164

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
           GFDPLHIAA QGHH IVQVLLD+D  LS+T GPSN+TPL++AATRGHT VVNELLSKD  
Sbjct: 165 GFDPLHIAASQGHHPIVQVLLDYDSGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCS 224

Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
           LLEI+RSNGKNALH AARQGHV++VKALLSKDPQLARRTDKKGQTALHMAVKGQSC+VVK
Sbjct: 225 LLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVK 284

Query: 261 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
           LLLEADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDIAE 
Sbjct: 285 LLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAED 344

Query: 321 LPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNI 380
           LP SEEAS+IKDCL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNVHNI
Sbjct: 345 LPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNI 404

Query: 381 SKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFI 440
           SKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD ++G AVV   A+FKIFF+
Sbjct: 405 SKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDHNDGSAVVAAYAAFKIFFV 464

Query: 441 FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRR 500
           FNAIALFTSLAVVVVQITLVRGETKAEKRVV VINKLMWLASVCTSV FIA+SYIVVG++
Sbjct: 465 FNAIALFTSLAVVVVQITLVRGETKAEKRVVVVINKLMWLASVCTSVTFIAASYIVVGKK 524

Query: 501 HEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNS 560
           +EWAAILVT+VGG+I++GV+GTMTYYVV+SKR RS+RK+EK A  RSGSNSW+ S++SNS
Sbjct: 525 NEWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWHHSEFSNS 584

Query: 561 EIDRIYAL 568
           E+D IYAL
Sbjct: 585 EVDPIYAL 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439834|ref|XP_002277535.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera] gi|297741528|emb|CBI32660.3| unnamed protein product [Vitis vinifera]

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/635 (71%), Positives = 499/635 (78%), Gaps = 75/635 (11%)

Query: 7   EGAERDLEKGIISPQ-----------------------------------LSQKSIGESS 31
           EG ERDLEKG   PQ                                    S K++G S+
Sbjct: 6   EGDERDLEKGEARPQNLSHLNDPSPLPSPSAATSGPALVLSNSGKALGISASSKALGASA 65

Query: 32  LTPSPSPSPSSA---------------TAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDT 76
            + +   SPSS                +  +LVLSNSGKRIDQAGKKKYVKQVTGRHNDT
Sbjct: 66  SSKALGVSPSSKALVLSNSGKALVLSNSGKSLVLSNSGKRIDQAGKKKYVKQVTGRHNDT 125

Query: 77  ELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE------------ 124
           ELHLAA RGDL AVKQIL  ID+QM G LSGA+FD EVAEIR++VV+E            
Sbjct: 126 ELHLAAARGDLEAVKQILGEIDAQMTGTLSGADFDAEVAEIRAAVVDEVNELGETALFTA 185

Query: 125 -----------LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP 173
                      LL+YSTKEG+  KN+SGFD LHIAA +GH  IV+VLLD+DP LS+T G 
Sbjct: 186 AEKGHLDVVKELLQYSTKEGIAMKNQSGFDALHIAASKGHQVIVEVLLDYDPELSKTVGQ 245

Query: 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 233
           SNATPL+SAATRGH AVVN LLSKD GLLEIS+SNGKNALH AARQGHVD+VKALL KDP
Sbjct: 246 SNATPLISAATRGHLAVVNNLLSKDSGLLEISKSNGKNALHLAARQGHVDIVKALLDKDP 305

Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
           QLARRTDKKGQTALHMAVKG S EVVKLLL+ADAAIVMLPDKFGNTALHVATRKKR EIV
Sbjct: 306 QLARRTDKKGQTALHMAVKGVSREVVKLLLDADAAIVMLPDKFGNTALHVATRKKRAEIV 365

Query: 294 TELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR 353
            ELL LPDTNVNALTRDHKTALDIAEGLP SEE SEI+DCLAR GAV+ANELNQPRDELR
Sbjct: 366 NELLLLPDTNVNALTRDHKTALDIAEGLPLSEETSEIRDCLARYGAVKANELNQPRDELR 425

Query: 354 KTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAS 413
           KTVT+IKKDVHTQLEQTR+TNKNV  I+KELRKLHREGINNATNSVTVVAVLFATVAFA+
Sbjct: 426 KTVTEIKKDVHTQLEQTRKTNKNVSGIAKELRKLHREGINNATNSVTVVAVLFATVAFAA 485

Query: 414 IFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEV 473
           IFTVPGGD+D G AVVV   SFKIFFIFNAIALFTSLAVVVVQITLVRGETK+E+RVVEV
Sbjct: 486 IFTVPGGDNDLGVAVVVDSPSFKIFFIFNAIALFTSLAVVVVQITLVRGETKSERRVVEV 545

Query: 474 INKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRV 533
           INKLMWLASVCTSVAFIASSYIVVGR + WAAILVTV+GG+ MAGVLGTMTYYVVKSKR 
Sbjct: 546 INKLMWLASVCTSVAFIASSYIVVGRHNRWAAILVTVIGGVTMAGVLGTMTYYVVKSKRT 605

Query: 534 RSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL 568
           R +RK+EK+  +RSG+ SW  SD S+SE++ IYA+
Sbjct: 606 RLLRKKEKH--LRSGTTSWRHSDLSDSEVNPIYAI 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.897	0.864	0.697	1.5e-177
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.892	0.835	0.636	1.9e-161
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.897	0.770	0.403	6.1e-94
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.890	0.931	0.420	3.1e-90
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.887	0.803	0.413	1.4e-89
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.797	0.851	0.399	6.6e-81
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.818	0.887	0.393	2.6e-79
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.360	0.341	0.274	8.9e-23
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.779	0.740	0.261	1.3e-21
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.760	0.753	0.232	3.5e-20

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 360/516 (69%), Positives = 406/516 (78%)

Query:    53 SGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDT 112
             + +R D A  ++ +K +   ++  E  L+ +  D   V +I   I ++ V  L      T
Sbjct:    81 AAQRGDLAAVQQILKDI---NSQMEGILSGEEFD-AEVAEIRASIVNE-VNELGETALFT 135

Query:   113 EVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 172
                +    VV ELLKYS++E + +KNRSG+DPLHIAA+QGHHAIV+VLLDHD +LSQT G
Sbjct:   136 AADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFG 195

Query:   173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232
             PSNATPLVSAA RGHT VVN+LLSK G LLEISRSN KNALH AARQGHV+V+KALLSKD
Sbjct:   196 PSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKD 255

Query:   233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
             PQLARR DKKGQTALHMAVKGQS EVVKLLL+AD AIVM PDK  NTALHVATRKKR EI
Sbjct:   256 PQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEI 315

Query:   293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDEL 352
             V  LLSLPDTN N LTRDHKTALDIAEGLP SEE+S IK+CLAR GA+RANELNQPRDEL
Sbjct:   316 VELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDEL 375

Query:   353 RKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXX 412
             R TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGI                    
Sbjct:   376 RSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFA 435

Query:   413 SIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVE 472
             +IFTVPGGD+++G AVVV RASFKIFFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVE
Sbjct:   436 AIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVE 495

Query:   473 VINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXX 532
             VINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IMAGVLGTMTYY      
Sbjct:   496 VINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKR 555

Query:   533 XXXXXXXXXNARMRSGSNSWYPSDYSNSEIDRIYAL 568
                      +AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct:   556 TRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
 Identities = 327/514 (63%), Positives = 381/514 (74%)

Query:    59 QAGKKKYVKQVTGRHNDTELHLAAQRGDLG-AVKQILYGIDSQMVGNLSGAEFDTEVAEI 117
             Q G    VKQ+     D+++       D    V QI+  + ++ V  L      T   + 
Sbjct:    97 QRGDLASVKQILS-DIDSQITGTITGADFDDEVAQIMTSVVNE-VNELGETPLFTAAEKG 154

Query:   118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
                VV ELL Y+T E L +KN SGFD LHIA  QGH +IVQ+LL+H+P LS+T   SNAT
Sbjct:   155 NIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLLLEHEPQLSKTVAQSNAT 214

Query:   178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
             PLVSAATRGH+ VVNELL+KD  LLEISRSNGKNALH AARQGHVD+V+ LL KDPQLAR
Sbjct:   215 PLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQGHVDIVRTLLDKDPQLAR 274

Query:   238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
             RTDKKGQT+LHMAVKG S +VV+LLL AD AIVMLPDKFGNT LH+ATRKKR EIV ELL
Sbjct:   275 RTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFGNTVLHIATRKKRAEIVNELL 334

Query:   298 SLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT 357
              LPDTNVNALTRDHKTA DIAEGL  SEE +EIK+ L+RCGA++ANELNQPRDELRKTVT
Sbjct:   335 QLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRCGALKANELNQPRDELRKTVT 394

Query:   358 QIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTV 417
             +IKKDVHTQLEQTR+TNKNV  I+KELRKLHR GI                    +IFTV
Sbjct:   395 EIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTV 454

Query:   418 PGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKL 477
             PGGDDD+G AV+V   SFKIFFIFNAIALFTSLAVVVVQITLVRGETK E+RVVEVINKL
Sbjct:   455 PGGDDDHGVAVMVHATSFKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKL 514

Query:   478 MWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXX 537
             MWLASVCT+VAFI+SSYIVVGRR+ +AA++VTV+G + M G+L  MTYY           
Sbjct:   515 MWLASVCTTVAFISSSYIVVGRRNRYAAVVVTVIGTVTMTGILSIMTYYVVKSKRTRIVR 574

Query:   538 XXXXNARMRSGSNSWY---PSDYSNSEIDRIYAL 568
                     R+G++SW+   PS+ + SE++ IYA+
Sbjct:   575 KKEKKKSARNGTSSWHHANPSE-TESEVNPIYAI 607

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 216/535 (40%), Positives = 319/535 (59%)

Query:    55 KRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEV 114
             +++   G+++   +  G+  D+ LH+AA+ G+L  VK+++ G   ++   LS    + E 
Sbjct:   132 RQLSFIGERRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGCGDELKELLSKQNLEGET 191

Query:   115 -----AEI-RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 168
                  AE   S VV E+LK+   E  +   R+GFDP H+AA QGH  ++++LL+  P+L+
Sbjct:   192 PLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLA 251

Query:   169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
              TT  S  T L +AAT+GH  VVN LL  D  L +I+++NGK ALH AAR GHV+VVK+L
Sbjct:   252 MTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSL 311

Query:   229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
             + KDP +  RTDKKGQTALHMAVKGQ+  +V  L++ D A++ + D  GNT LH+AT K 
Sbjct:   312 IGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNKG 371

Query:   289 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQP 348
             R +IV  L+S    N+N + +   T LD++E + ++E  S +K+     GA  A +L +P
Sbjct:   372 RIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEA----GAATAKDLGKP 427

Query:   349 RD---ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXX 405
             ++   +L++TV+ IK +V +QL+Q+R+T   V  I+K L+KLH  G+             
Sbjct:   428 QNPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVL 487

Query:   406 XXXXXXXSIFTVPGG-DDDN------GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQIT 458
                    +IFT+PG  ++D       G+A +  +A F +FFIF+++ALF SLAVVVVQ +
Sbjct:   488 IATVAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTS 547

Query:   459 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAG 518
             +V  E KA+K++V VINKLMW A +  S+AF++ SYIVVG+   W A+  TV+GG IM  
Sbjct:   548 VVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLT 607

Query:   519 VLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSW--YPSDYS--NSEID-RIYAL 568
              +G M Y                  R +S S S    PSD    N E + R+YAL
Sbjct:   608 TIGAMCYCVVMHRMEESKLRSIRKERSKSQSFSMSRMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 223/530 (42%), Positives = 307/530 (57%)

Query:    62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGID----SQMVG--NLSGAEFDTEVA 115
             KKK +KQ+TG+ +DT LH A + G+   V +IL        +Q++G  N SG       A
Sbjct:    15 KKKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAA 74

Query:   116 EIRS-SVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 174
             E     +V E++       +  K R+GFD  HIAA QG   +++VL +    L+ T   S
Sbjct:    75 EYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLS 134

Query:   175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
             N T L +AAT+GHT VVN LL     L  I++SNGK ALH A+R GHV V+KALL+ +P 
Sbjct:   135 NTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPA 194

Query:   235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
             +A R DKKGQTALHMAVKG + EVV+ L++AD + + + D  GNTALH+A RK R++IV 
Sbjct:   195 IAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIVK 254

Query:   295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI-KDCLARCGAVRANELNQPRDELR 353
              LL+   T+  A+ R  +TALD AE + + E A  + K  +     ++ +  N P  EL+
Sbjct:   255 LLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGPN-PARELK 313

Query:   354 KTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXS 413
             +TV+ IK +VH QLE TR T K V  I+K+L K+H EG+                    +
Sbjct:   314 QTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAA 373

Query:   414 IFTVPGG--DDDN--------GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGE 463
             IFTVPG   +D +        G+A +     F IFFIF++IALF SLAVVVVQ ++V  E
Sbjct:   374 IFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIE 433

Query:   464 TKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTM 523
             +KA+K+++ VINKLMWLA V  SVAF+A S++VVG   +W AI VT +G  IM   LGTM
Sbjct:   434 SKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTM 493

Query:   524 TYYXXXXXXXXXXXXXXXNARMRSGSNSW-YP----SDYSNSEIDRIYAL 568
              Y+                + + S S SW  P    SD   +E  ++YA+
Sbjct:   494 CYWIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 220/532 (41%), Positives = 313/532 (58%)

Query:    61 GKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILY---GIDS-QMVGNLSGAEFDTEV-- 114
             G++K      G+  D+ LHLAA+ G+LG V +++    GI+  + + +    E +T +  
Sbjct:   100 GERKKKTDSPGKRGDSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYS 159

Query:   115 -AEI-RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 172
              AE   S VV E+LK+   +  + K R+GFDP H+AA QGH   ++ LL+  P+L+ T  
Sbjct:   160 AAENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVD 219

Query:   173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232
              S  T L +AA++GHT VVN LL  D  L +I+++NGK ALH AAR GH +VVK+L+  D
Sbjct:   220 LSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGND 279

Query:   233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
               +  RTDKKGQTALHMAVKGQ+  +V  L++ D AI+ + D  GNT LH AT K R +I
Sbjct:   280 ASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKI 339

Query:   293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD-- 350
             V  L+S    N+NA+ +   TALDIAE + + E  S +K+     GA  A +L +PR+  
Sbjct:   340 VRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEA----GAATAKDLGKPRNPA 395

Query:   351 -ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXX 409
              +L +TV+ IK +V +QL+Q+R+T   V  I+K L+KLH  G+                 
Sbjct:   396 KQLNQTVSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATV 455

Query:   410 XXXSIFTVPGG-DDDN-------GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVR 461
                +IFT+PG  ++D        G+A +  +A F +FFIF+++ALF SLAVVVVQ ++V 
Sbjct:   456 AFAAIFTIPGQYEEDRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVV 515

Query:   462 GETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLG 521
              E KA+K +V VINKLMWLA +  SVAF++ S+IVVG+   W AI  T++GG IM   +G
Sbjct:   516 IEQKAKKNLVFVINKLMWLACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIG 575

Query:   522 TMTYYXXXXXXXXXXXXXXXNARMRSGSNSW--YPSDYS--NSEID-RIYAL 568
              M Y                  R +S S S    PS+    N E + R+YAL
Sbjct:   576 AMCYCVVMHRIEESKLKSLRKERSKSKSFSLSHMPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 186/466 (39%), Positives = 269/466 (57%)

Query:   115 AEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 174
             AE    +   L+++S+ E +  +++S  +  H+AA +GH  IV+ LL   P L +    S
Sbjct:    68 AENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDAS 127

Query:   175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
             N +PL +AA + H  +VN +L  D     I R NGK +LH A R G + +VKAL+ KD  
Sbjct:   128 NTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAA 187

Query:   235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
             +    DKKGQTALHMAVKG+S EVV+ +L+AD  I+   D+ GNTALH+ATRK R +I +
Sbjct:   188 IVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITS 247

Query:   295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE--- 351
              LL+     VNA+    +TA+D+A+ L  SE A EI + L   GA     + +  DE   
Sbjct:   248 LLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGR-EDEARA 306

Query:   352 LRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXX 411
             L++ V+ IK +V +QL Q  +TN+ V  I+KELRKLHRE +                   
Sbjct:   307 LKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAF 366

Query:   412 XSIFTVPGG---DDDN-GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAE 467
              +IF +PG    +  + G+A +  R  F++F + NA +LF SLAVVVVQITLV  +T+A+
Sbjct:   367 LAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQ 426

Query:   468 KRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYX 527
             K+VV V+NKLMW A  CT  AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+ 
Sbjct:   427 KKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFV 486

Query:   528 XXXXXXXXXXXXXXNARMRSGSNSW----YPSDYSN-SEIDRIYAL 568
                             R  S S SW    + SD+ + S+ ++I AL
Sbjct:   487 FRQRFRSGNDSQRRIRRGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 191/486 (39%), Positives = 277/486 (56%)

Query:    62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILY---GID-SQMVG--NLSGAEFDTEVA 115
             KK   KQ+T R +DT LH A + G    + +++    G++  +++   N SG       A
Sbjct:     5 KKTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAA 64

Query:   116 EIR-SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 174
             E   + +V  L+K+S       K ++GFD  HIAA  G+  ++ VL++ +P LS T   S
Sbjct:    65 EYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSS 124

Query:   175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
               T L +AA++GH  +V  LL K   L  I+RSNGK ALH AAR GH  +VK L+ K   
Sbjct:   125 KTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAG 184

Query:   235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
             +  R DKKGQTALHMAVKGQ+ E+V +L+EAD +++   D  GNT LH+A RK R EIV 
Sbjct:   185 MVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQ 244

Query:   295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC-LARCGAVRANELNQPRDELR 353
              +L   + +  A+ +  +TALDIAE     E    ++   +    +++  E  +P    R
Sbjct:   245 TVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSR 304

Query:   354 K---TVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXX 410
             K   TV++I  +VHTQLEQT RT + +  I+K + K+H EG+                  
Sbjct:   305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVA 364

Query:   411 XXSIFTVPGG--DDDN--------GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLV 460
               +IF VPG   DD          G+A    R  F IF +F++ ALF SLAVVVVQ ++V
Sbjct:   365 FAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVV 424

Query:   461 RGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVL 520
               E +A+K+++ +INKLMW+A +  SVAF++ S++VVG + +  A+ VT +G LIM   L
Sbjct:   425 VIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTL 484

Query:   521 GTMTYY 526
             GTM Y+
Sbjct:   485 GTMCYW 490

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
 Identities = 61/222 (27%), Positives = 106/222 (47%)

Query:    73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
             + DT LHLAA  GD+  V Q+L   D+ +   L  A  +     +  + V+  ++ + K 
Sbjct:    70 YGDTPLHLAALLGDVNIVMQML---DTGL--ELYSARNNKNQTPLHLAFVSIFME-AAKF 123

Query:   133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG-----PSNATPLVSAATRGH 187
              + + N    D L+ A   G   IV ++L+  P L++         S +T L  A  +G 
Sbjct:   124 IVEKTNSVDLDELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHYACDKGD 183

Query:   188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP-QLARRTDKKGQTA 246
               + + LL  + GL E   S G + LH A ++G V +++  + K P     RT  K +T 
Sbjct:   184 LELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSK-ETV 242

Query:   247 LHMAVKGQSCEVVKLLLE--ADAAIVMLP--DKFGNTALHVA 284
              H+A + ++ +    + E    ++ ++L   D+ GNT LH+A
Sbjct:   243 FHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIA 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 124/475 (26%), Positives = 205/475 (43%)

Query:    69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQ-MVGNLSGAEFDTEVAEIRSSVVNELLK 127
             VT    +T LHLAA+ G++  + ++L   +++ M  N  G     + A I + + N +  
Sbjct:    97 VTNVDGNTPLHLAAEIGNINILWKMLETGEAECMKINKQG-----QTAFILACLNNNV-- 149

Query:   128 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 187
              S +  +   +      L+ A  +    I+  +L+  P+L        +T L  A   G+
Sbjct:   150 NSARILVEGTSSMTMVELNAAFSEQQQVIIDSILEKFPNLILDADEEQSTLLHKACKSGN 209

Query:   188 TAVVNELLSKDGG--LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG-Q 244
               +   LL  D    + E    +G   LH A   G V+++K  L K P     T +   +
Sbjct:   210 LEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVEILKEFLCKAPSSFNITTQGTIE 269

Query:   245 TALHMAVKGQSCEVVKLLLEADAAIVMLP---DKFGNTALHVATRKKRTEIVTELLSLPD 301
             T  H+A K Q  +   + +   A I  L    D   NT LHVA     T +V  +LS  +
Sbjct:   270 TVFHLAAKYQKTKAF-IFMAQSANIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILS--E 326

Query:   302 TNVNALTRDHK--TALDIA--EGLPSSEEASEIKDCLARCG--AVRANELNQPRDELRKT 355
             T ++   ++ K   A+D+   EG+     +   +D   +    A      ++P + +R T
Sbjct:   327 TTIDVTLKNKKGFAAVDLIDKEGVDFPLLSLWFRDEAEKIQRPARYVKFAHEPVELIRNT 386

Query:   356 VTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIF 415
                 K    ++     R  ++  N  KE R++H E +                       
Sbjct:   387 NNGEKLSSESRAMDLLREGRDPRN--KE-REMHSESLQNARNTITIVAVLIASVAFTCGI 443

Query:   416 TVPGG-DDDN---GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVV 471
               PGG   D    GKA   R  +FKIF + N IALFTSL++V + ++++   TKA K  V
Sbjct:   444 NPPGGVHQDGPFIGKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMCV 503

Query:   472 EVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYY 526
              + +K+MWLA    + A+ AS++I V   +E +  LV      I +  LG+M  Y
Sbjct:   504 VIAHKMMWLAVASMATAYAASAWITVPH-NEGSKWLVYTTSA-IASVALGSMFVY 556

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 110/474 (23%), Positives = 195/474 (41%)

Query:    69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG-AEFDTEVAEIRSSVVNELLK 127
             VT    DT LH AA+ G    V QIL           SG AEF T V     +      +
Sbjct:    83 VTNLDGDTPLHFAARWGHATIVAQIL----------ASGYAEF-TPVNGRGETAFVVACR 131

Query:   128 YSTKE--GLTRKNRSGFD--PLHIAAVQGHHA-IVQVLLDHDPSLSQTTGPSNATPLVSA 182
             Y+  +   L  +  S       +   V G +  I + +L+  P L+       +TPL  A
Sbjct:   132 YTNPDVASLILEETSSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPLHHA 191

Query:   183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 242
                 +  +   LL  D  L E    +G   LH AA +  + ++K    K P+        
Sbjct:   192 CNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPA 251

Query:   243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLP--DKFGNTALHVATRKKRTEIVTELLSLP 300
              +T  H+A + ++      + E+     +L   D++GNT LH A       ++  +    
Sbjct:   252 KETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSITYET 311

Query:   301 DTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDEL-RKTVTQI 359
               +++A       A+D+       E+ S+I   L R  A +   L+ P  +   K +  +
Sbjct:   312 TIDLSAKNNRGLKAVDLIN--VDDEDYSKISRWL-RFDAKQIRSLSDPNHQQGNKNMGVL 368

Query:   360 KKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPG 419
              +    Q+ +T          SK   K+H E +                         PG
Sbjct:   369 SEYKKMQIFETP---------SKRESKMHAEALLNARNTITIVAVLIASVAFTCGINPPG 419

Query:   420 G----DDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVIN 475
             G        GK+   R  +F++F I N IALFTSL +V++ ++++   T+  K  +++ +
Sbjct:   420 GVYQEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPYRTRPLKNFLKLTH 479

Query:   476 KLMWLASVCTSVAFIASSYIVV----GRRHEWAAILVTVVGGLIMAGVLGTMTY 525
             +++W+A    ++A+++++ I++    G+R  W    V  +  L++ G+   MTY
Sbjct:   480 RILWVAVASMALAYVSAASIIIPHVEGKR--WLFTTVLSISTLMLGGLFAFMTY 531

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7A2	Y3236_ARATH	No assigned EC number	0.7871	0.9911	0.9542	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080423 hypothetical protein (588 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	568
pfam13962	114	pfam13962, PGG, Domain of unknown function	5e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-08
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-06
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	1e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PRK00733	666	PRK00733, hppA, membrane-bound proton-translocatin	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	8e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam03030	669	pfam03030, H_PPase, Inorganic H+ pyrophosphatase	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  113 bits (285), Expect = 5e-30
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 389 REGINNATNSVTVVAVLFATVAFASIFTVPGG------DDDNGKAVVV-RRASFKIFFIF 441
            E +    NS+ VVA L ATV FA+ FT PGG          G  ++  +   FK FF+ 
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 442 NAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIV 496
           N IA   SL  V++ + +V   ++   R++  +  L+WL+ +   VAF A SY V
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLL-ALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (272), Expect = 4e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL  AA+ GH  VV  LL   G  +    ++G+  LH AA+ GH+++VK LL K   + 
Sbjct: 9   TPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV- 66

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
              DK G T LH+A +  + +VVKLLL+   A V   DK G T LH+A +    E+V  L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 297 L 297
           L
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (251), Expect = 3e-25
 Identities = 47/112 (41%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 207 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 266
            +G+  LH AA  GH++VVK LL     +  + D  G+T LH+A K    E+VKLLLE  
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 267 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            A V   DK GNT LH+A R    ++V  LL     +VNA  +D +T L +A
Sbjct: 64  -ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 49/158 (31%), Positives = 67/158 (42%), Gaps = 36/158 (22%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
               T LHLAA  G L  VK +L           +GA+ +                    
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLE----------NGADVN----------------AKDN 38

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 191
           +G T        PLH+AA  GH  IV++LL+    ++        TPL  AA  G+  VV
Sbjct: 39  DGRT--------PLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHLAARNGNLDVV 89

Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 229
             LL   G  +     +G+  LH AA+ GH++VVK LL
Sbjct: 90  KLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 213 LHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 271
           LH AA+ G++++VK LL K   +    TD    TALH+A +  + E+VKLLLE  A +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 272 LPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVN 305
             DK GNTALH+A R    EIV  LL    D N+ 
Sbjct: 57  -KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 204
           LH+AA  G+  +V++LL+    +         T L  AA  G+  +V  LL   G  +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
              +G  ALH AAR G++++VK LL     +  +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L  AA  G+  +V  LL K     +++  +   ALH AAR G++++VK LL     +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA---DVNLGDTDTALHLAARNGNLEIVKLLLEHGADV-NA 56

Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269
            DK G TALH+A +  + E+VKLLLE  A I
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.0 bits (182), Expect = 8e-16
 Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D+ G+T LH+A      EVVKLLLE   A V   D  G T LH+A +    EIV  LL 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +D  T L +A
Sbjct: 62  K-GADVNARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 58/208 (27%), Positives = 90/208 (43%), Gaps = 33/208 (15%)

Query: 117 IRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA-----IVQVLLDHDPSLSQTT 171
               VV  LL        + KN S   PLH  +   ++      IV++LL++  +++   
Sbjct: 46  RNIDVVKILLDNGADINSSTKNNST--PLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPD 103

Query: 172 GPSNATPLVSAATR--GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD--VVKA 227
                TPL+ A ++     ++V  LL   G  + I  S+G+N LH       +D  ++K 
Sbjct: 104 NNGI-TPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKL 161

Query: 228 LLSK--DPQLARR-------------TDKKGQTALHMAVKGQSCEVVKLLLE--ADAAIV 270
           L+ K  D     R              D  G T LH AV   + E VK LL+  A+  +V
Sbjct: 162 LIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV 221

Query: 271 MLPDKFGNTALHVATRKKRTEIVTELLS 298
              +K+G+T LH+A      EI   LL+
Sbjct: 222 ---NKYGDTPLHIAILNNNKEIFKLLLN 246

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.4 bits (161), Expect = 3e-12
 Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 9/195 (4%)

Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
             ++  LL   + +     ++     L +A +        +L                 P
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLP 76

Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-----VDVVKALLSK-- 231
           L SAA++G   +V  LL+  G  +    ++G   LH AA  G+     ++V K LL    
Sbjct: 77  LHSAASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135

Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
           D  +    D+ G T LH A      ++V+LLLEA A      + +G TAL  A +  R E
Sbjct: 136 DLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIE 194

Query: 292 IVTELLSLPDTNVNA 306
           +V  LL         
Sbjct: 195 LVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
            ALH AA  G +++VK LL K   +  RTD+ G TALH+A +  + EV+KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
           LL   P     TD  G T LH+A K  + E+V+ LL+    +  L D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 57.5 bits (138), Expect = 3e-09
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 10/162 (6%)

Query: 112 TEVAEIRSSVVNELLKYSTKEGL--TRKNRSGFDPLHIAAVQGH-----HAIVQVLLDH- 163
             +    S   ++++K     G     K+  G  PLH+AA+ G+       + ++LL+  
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 164 -DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 222
            D  ++        TPL  AA  G   +V  LL   G       S G  AL  AA+ G +
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRI 193

Query: 223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
           ++VK LL K   L+         A     K     +  L++ 
Sbjct: 194 ELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 247 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
           LH+A K  + E+VKLLLE  A  V L D   +TALH+A R    EIV  LL     +VNA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA-DVNLGDT--DTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 307 LTRDHKTALDIA 318
             +D  TAL +A
Sbjct: 57  KDKDGNTALHLA 68

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
           LL      L  +  NG   LH AA+ G +++V+ LL K        D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 215
           I ++LL +   ++        T L  A       +   LLS    +    ++N  + LH 
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHH 207

Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLEADAAIVMLPD 274
           A +  +  +V  LL        R DK G T LH++V   +  +++KLLLE    +     
Sbjct: 208 AVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266

Query: 275 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
             G TALH + + +R     +LL     ++N+L     T L  A
Sbjct: 267 ILGLTALHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 33/235 (14%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
           G  P+ +A        +++L+ H  ++     P   + L  A   G    V ELL     
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHG-AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEV 258
             ++   +G   LH A     +D++K L+++  DP +   TDK   + LH+AV     + 
Sbjct: 94  ADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKF--SPLHLAVMMGDIKG 150

Query: 259 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           ++LL++  A +  + D  G T L +A  K    I   LL     N++   ++        
Sbjct: 151 IELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKN-------- 200

Query: 319 EGLPSSEEASEIKDCLARCGAVRANELNQPRDELRK-----TVTQIKKDVHTQLE 368
                           A C A+  N+++  R  +++      +  I+ +  T L+
Sbjct: 201 ------------GCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILD 243

Length = 413

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 209 GKNALHFAARQGHV-DVV---KALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKL 261
           G+N LH+  R G V D++    A+  ++  L    ++ G+  +H+     K    E +KL
Sbjct: 17  GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76

Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           L+E  A I      FGNT LH+A   +  E+ T L + P  N+  L    KT   +A
Sbjct: 77  LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133

Length = 154

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           LLE     +   D  GNT LH+A +    E+V  LL     ++N    D  TALD+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 148 AAVQGHHAIVQVLLDHDPSLSQ-TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 206
           AA +G  A V   L+    L+         + L  AA       + ELL        +  
Sbjct: 24  AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV-- 81

Query: 207 SNGKNALHFAARQGHVDVVKALLS---------------KDPQLARRTDKKGQTALHMAV 251
             G   LH A    +VD V+A+L                 D   +  T   G TALH+A 
Sbjct: 82  --GDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT--PGITALHLAA 136

Query: 252 KGQSCEVVKLLLEADAAI 269
             Q+ E+VKLLLE  A++
Sbjct: 137 HRQNYEIVKLLLERGASV 154

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALL 229
           T L  AA  G   +V  LL K    ++I+R   +G  ALH AA  G+++V+K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKG---VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 11/211 (5%)

Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
           ++++ ELLK      +   +  G  PLHIAA +G+   V VLL H  ++       N T 
Sbjct: 538 AALLEELLKAKLDPDIG--DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGN-TA 594

Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNALHFAARQGHVDVVKALLSKDPQLAR 237
           L +A +  H  +   L         IS  +   + L  AA++  +  +K LL +   +  
Sbjct: 595 LWNAISAKHHKIFRILYH----FASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295
             D +G TAL +A+     ++V+LL+   AD       D F  T L    +K+       
Sbjct: 651 E-DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSIT 709

Query: 296 LLSLPDTNVNALTRDHKTALDIAEGLPSSEE 326
           ++     +   L RD  +     +G  S  +
Sbjct: 710 IVDSVPADEPDLGRDGGSRPGRLQGTSSDNQ 740

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           G   LH AA+ G   +V+ LL+    +++T      T L  AA  G+  V+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 75  DTELHLAAQRGDLGAVKQIL----YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
           ++ELH A + GD+ AV+++L    +  D      ++     T + ++   ++  L+    
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL--DIMKLLIARGA 126

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
              +   ++  F PLH+A + G    +++L+DH   L         TPL+ A  +G  A+
Sbjct: 127 DPDIPNTDK--FSPLHLAVMMGDIKGIELLIDHKACLDIEDC-CGCTPLIIAMAKGDIAI 183

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
              LL     +    ++    AL +A     +D+V+  + +
Sbjct: 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 24/143 (16%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD---- 232
           TPL+ A   G   +V EL  K G  +    +   + L  A + G  D++K L+       
Sbjct: 37  TPLIDAIRSGDAKIV-ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95

Query: 233 ----PQLARRT--------------DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 274
               P + +                D + +T LH A+K    E +K+L E  A  V + D
Sbjct: 96  ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIED 154

Query: 275 KFGNTALHVATRKKRTEIVTELL 297
             G   +H+A +    +I+  LL
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLL 177

Length = 434

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 207 SNGKNALHFAARQGHVDVVKALL-----SKDPQLARRTDKKGQTALHMAV----KGQSCE 257
           S G+N  H AAR G  D++                  TD  GQ  +H+A        + E
Sbjct: 19  SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAE 78

Query: 258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 317
           ++  L+E  A I       G+TALH+A  ++  ++   L   P  +++    D+K+  ++
Sbjct: 79  IIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL 138

Query: 318 AE 319
           A 
Sbjct: 139 AI 140

Length = 169

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 37/198 (18%)

Query: 120 SVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH--AIVQVLLDHDPSLSQTTGPSNAT 177
           S+V  LL       +  KN  G + LH+          I+++L+D               
Sbjct: 122 SIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDLKILKLLIDK-----------GVD 168

Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQL 235
             ++A  R     VN LLS  G  + I    G   LH+A    + + VK LL    +P L
Sbjct: 169 --INAKNR-----VNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220

Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEA-------DAAIVMLPDKFGNTALHVATRKK 288
               +K G T LH+A+   + E+ KLLL            ++   DK  NT   +   KK
Sbjct: 221 ---VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIETLLYFKDKDLNTITKIKMLKK 277

Query: 289 RTEIVTELLSLPDTNVNA 306
              I+   L  P    N 
Sbjct: 278 --SIMYMFLLDPGFYKNR 293

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 72  RHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
               T LH A ++GDL ++K +  YG D   + + +G  +   +A I+ +   +++K   
Sbjct: 122 AELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGC-YPIHIA-IKHNFF-DIIKLLL 177

Query: 131 KEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
           ++G     K+ +G  PLH AA  G +A +++L+DH   +      +  TPL +A     +
Sbjct: 178 EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAIIHNRS 236

Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQG-HVDVVKALLSKDPQLARRTDKKGQTAL 247
           A+  ELL  +   +     +G   LH A      +D++  LL     ++ + D KG+  +
Sbjct: 237 AI--ELLINNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIK-DNKGENPI 292

Query: 248 HMAVK 252
             A K
Sbjct: 293 DTAFK 297

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 13/148 (8%)

Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--QGHVDVVKALLSK-- 231
            TPL        T  V +LL K G  +      G+  LH        +  V++ LL K  
Sbjct: 84  FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA 143

Query: 232 DPQLARRTDKKGQTALHMAVKGQSC--EVVKLLLEADAAIVMLPDKFGNTALHV--ATRK 287
           D       D  G T L + +K ++   E+++LL++A A +  + D    + LH    + K
Sbjct: 144 DV---NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFK 199

Query: 288 KRTEIVTELLSLPDTNVNALTRDHKTAL 315
            R  IV EL+     +  A      T L
Sbjct: 200 PRARIVRELIRA-GCDPAATDMLGNTPL 226

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 48/237 (20%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 114 VAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP 173
           +  I   ++  +L       +  K+      LH A  +G    +++L ++   ++     
Sbjct: 99  IPCIEKDMIKTILDCGID--VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN--IED 154

Query: 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 233
            N    +  A + +   + +LL + G    +  +NG++ LH AA  G    +K L+    
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214

Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
            +  +  K G T LH A+   +   ++LL+  + A +   D  G+T LH A        +
Sbjct: 215 HIMNKC-KNGFTPLHNAII-HNRSAIELLI--NNASINDQDIDGSTPLHHAINPPCDIDI 270

Query: 294 TELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD 350
            ++L     +++      +  +D A       +   IKD +A   AV   E ++ +D
Sbjct: 271 IDILLYHKADISIKDNKGENPIDTA--FKYINKDPVIKDIIA--NAVLIKEADKLKD 323

Length = 434

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 210 KNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMAVK-GQSCEVVK--LL 262
           +N      R G++    +V    +S D  L  R D  G+   HM     ++  V+K  LL
Sbjct: 21  QNTFLRICRTGNIYELMEVA-PFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELL 79

Query: 263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           +   A I       GNT LH+A   K  E+   L      N+ A+   H+TA  IA
Sbjct: 80  VNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA 135

Length = 166

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 208 NGKNALHFAARQGHVDVVKALLSK 231
           +G   LH AAR GH++VVK LL  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 400 TVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIF-FIFNAIALFTSLAVVVVQIT 458
           +    + A +   +              V+        F  +  A+ +  S    ++ I 
Sbjct: 211 SYAVTIVAAMVLGAAAADAAFGV---AGVL--------FPLLIAAVGIIAS----IIGIF 255

Query: 459 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG---RRHEWAAILVTVVGGLI 515
            VR         ++ +N+ + + +V + V    ++Y ++G       W  +   V+ GL+
Sbjct: 256 FVR--LGKGGNPMKALNRGLIVTAVLSIVLTYFATYWLLGDGADGFTWLNLFGAVLIGLV 313

Query: 516 MAGVLGTMT-YYVVKSKR-VRSI 536
           +  ++G +T YY     R V+ I
Sbjct: 314 VGALIGLITEYYTSTEYRPVKEI 336

Length = 666

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 160 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
           LL+H P     T  +  TPL  AA  G   +V  LL K G  L +  S+G  AL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           D  G+T LH+A      +VV++LLE  A   +L DK G T L +A      E+V  L   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQLLSRH 170

Query: 300 PDTNVNALTRDHKTALDIAEGLPSSEEASEI 330
              +            D   G P S E S I
Sbjct: 171 SQCHFEL---GANAKPDSFTGKPPSLEDSPI 198

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 6/174 (3%)

Query: 142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 201
           F PLH A    +  +V+ LL    +++Q     + TPL       +   + E++     +
Sbjct: 38  FIPLHQAVEARNLDVVKSLLTRGHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRS---I 93

Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
            + S      A+  A    +V++ K +L+   +  +  D                E+ KL
Sbjct: 94  NKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLV-YIDKKSKDDIIEAEITKL 152

Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
           LL   A I M     GNTALH AT  K   + TELL     NVN   + + + L
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRL-TELLLSYGANVNIPDKTNNSPL 205

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDP 233
           +G+  LH AA  G+++VVK LL K  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 437 IFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYI- 495
           + F+ N + L   LA++ V I L+          +    + +++  +   V  +   ++ 
Sbjct: 5   LLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLVGFLG 64

Query: 496 VVGRRHEWAAILVTVVGGLIM-------AGVLGTMTYYVVKSKRVRSIRKREKNARMRSG 548
             G   E   +L+T    L++       AG+L     +V + K   S+++      +   
Sbjct: 65  CCGAIKESRCLLLTYFILLLILFILEIAAGILA----FVYRDKLESSLKE-----GLNYK 115

Query: 549 SNSWYPSDYSNSEIDRI 565
             S+         ID +
Sbjct: 116 DKSYNDDPNLTEAIDEL 132

Length = 221

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 282
           ++ K LLS    +  +   KG TALH A + +   + +LLL +  A V +PDK  N+ LH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLH 206

Query: 283 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
            A +     IV  LL     + +A  +   T L I+ G
Sbjct: 207 HAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVG 243

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAI 269
            G T LH+A +    EVVKLLLEA A +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 171
           G  PLH+AA  GH  +V++LL+    ++   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQL 235
           +G   LH AAR G++++VK LL     +
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 208 NGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
           +G+  LH A   GHV VV+ LL    DP L    DK G+T L +A +    EVV+LL 
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTL---LDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase

 Score = 40.9 bits (97), Expect = 0.002
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 21/142 (14%)

Query: 400 TVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITL 459
           +    + A +   +      G D     V+          +  A+ +  S+         
Sbjct: 225 SYAVTIVAAMVLGAAL---FGADGVQAGVL-------FPLLVAAVGIIASIIGTF----F 270

Query: 460 VRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG---RRHEWAAILVTVVGGLIM 516
           VR  T      ++ +N+ + ++++ + VA   ++Y ++    +   W  + + V+ GL+ 
Sbjct: 271 VR--TGKGANPMKALNRGLIVSAILSIVATYFATYWLLPAAGKGFLWWNLFLAVLIGLVA 328

Query: 517 AGVLGTMT-YYVVKSKR-VRSI 536
             ++G +T YY   S R VR I
Sbjct: 329 GALIGLITEYYTSTSYRPVREI 350

The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists. Length = 669

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TP+  AA RG+  +VN LLS  G  + I   +  + L  A    ++D +KA++       
Sbjct: 180 TPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDN----- 233

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEIVTE 295
           R    K   +L  A++ +  E   LL +A  ++  + D   NT LH A++    + +V +
Sbjct: 234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSI-DDCKNTPLHHASQAPSLSRLVPK 292

Query: 296 LL 297
           LL
Sbjct: 293 LL 294

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAI 269
            G T LH+A +  + E+VKLLLE  A I
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	568
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PF13962	113	PGG: Domain of unknown function	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
PHA02741	169	hypothetical protein; Provisional	99.82
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.3
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.3
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.29
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.26
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.26
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.72
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.61
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.61
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.61
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.58
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.57
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.53
PF13606	30	Ank_3: Ankyrin repeat	98.52
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.49
PF13606	30	Ank_3: Ankyrin repeat	98.48
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.43
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.38
KOG0522	560	consensus Ankyrin repeat protein [General function	98.37
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.29
KOG0522	560	consensus Ankyrin repeat protein [General function	98.24
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.12
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.06
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.05
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.93
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.82
KOG0511	516	consensus Ankyrin repeat protein [General function	97.8
KOG2384	223	consensus Major histocompatibility complex protein	97.78
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.78
KOG0511	516	consensus Ankyrin repeat protein [General function	97.64
KOG2384	223	consensus Major histocompatibility complex protein	97.55
KOG2505	591	consensus Ankyrin repeat protein [General function	96.5
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.31
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.95
KOG2505	591	consensus Ankyrin repeat protein [General function	93.84
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.45
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.81
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.82
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	89.39
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.94
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.45
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	81.03

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=322.34  Aligned_cols=266  Identities=19%  Similarity=0.243  Sum_probs=230.6

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcC---------------
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST---------------  130 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~---------------  130 (568)
                      .+..+..|.||||.|++.|+.++|++|++ +.+.+..+..+.+|++.|+..++.++++.|++.+.               
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i  107 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI  107 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence            34566789999999999999999999997 45555566677889999999999999999987643               


Q ss_pred             ------cccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 008358          131 ------KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI  204 (568)
Q Consensus       131 ------~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~  204 (568)
                            +.+++.+|..|.||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++.
T Consensus       108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-g~~~n~  185 (434)
T PHA02874        108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEK-GAYANV  185 (434)
T ss_pred             HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCC
Confidence                  3457788999999999999999999999999999998 67889999999999999999999999998 566788


Q ss_pred             cCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 008358          205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  284 (568)
Q Consensus       205 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A  284 (568)
                      .+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||.|+..+. +++++|+ .|++ ++.+|.+|+||||+|
T Consensus       186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A  261 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHA  261 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHH
Confidence            8999999999999999999999999999987 6778899999999999865 5666666 5777 788999999999999


Q ss_pred             HHcC-cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358          285 TRKK-RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  342 (568)
Q Consensus       285 ~~~g-~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  342 (568)
                      +..+ +.+++++|++ .|++++.+|..|+||||+|++....   ..+++.|+..+....
T Consensus       262 ~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~---~~~ik~ll~~~~~~~  316 (434)
T PHA02874        262 INPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINK---DPVIKDIIANAVLIK  316 (434)
T ss_pred             HhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCc---cHHHHHHHHhcCchh
Confidence            9876 7899999999 8999999999999999999986532   245566777766543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=327.35  Aligned_cols=267  Identities=24%  Similarity=0.293  Sum_probs=243.0

Q ss_pred             hHhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHH-----HHHhhhhHHHHHHhhhcCcccccccC
Q 008358           65 YVKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDT-----EVAEIRSSVVNELLKYSTKEGLTRKN  138 (568)
Q Consensus        65 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~-----a~~~~~~~~v~~Ll~~~~~~~~~~~~  138 (568)
                      .+....+..+.||||.|+..|+.++|+.|++ +.+.+..+..+.++++.     |+..++.++++.|++.  +++++..|
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~--ga~i~~~d  103 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY--GANVNAPD  103 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC--CCCCCCCC
Confidence            3455667789999999999999999999997 55666566667789999     9999999999999975  45668899


Q ss_pred             CCCCcHHHHHH--HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCccccCcCCChHHH
Q 008358          139 RSGFDPLHIAA--VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALH  214 (568)
Q Consensus       139 ~~g~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  214 (568)
                      ..|.||||+|+  ..|+.+++++|+++|+++ +..+..|.||||+|+..|  +.+++++|+++ +.+++..|..|.||||
T Consensus       104 ~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~  181 (480)
T PHA03100        104 NNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLH  181 (480)
T ss_pred             CCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHH
Confidence            99999999999  999999999999999998 678899999999999999  99999999998 5678888999999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCC------CCHHHHHHhCCC--HHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 008358          215 FAARQGHVDVVKALLSKDPQLARRTDKKG------QTALHMAVKGQS--CEVVKLLLEADAAIVMLPDKFGNTALHVATR  286 (568)
Q Consensus       215 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~~--~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~  286 (568)
                      +|+..|+.+++++|+++|+++ +..+..|      .||||.|+..++  .+++++|++.|++ ++.+|..|+||||+|+.
T Consensus       182 ~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~  259 (480)
T PHA03100        182 IAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVY  259 (480)
T ss_pred             HHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            999999999999999999988 6667778      899999999999  9999999999999 88999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358          287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  342 (568)
Q Consensus       287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  342 (568)
                      .|+.+++++|++ .|++++.+|..|.||+|+|+..+.    .++++.|+++|+..+
T Consensus       260 ~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~----~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        260 NNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNN----KEIFKLLLNNGPSIK  310 (480)
T ss_pred             cCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCC----HHHHHHHHhcCCCHH
Confidence            999999999999 899999999999999999998655    478899999998644

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-35  Score=304.70  Aligned_cols=254  Identities=27%  Similarity=0.373  Sum_probs=162.2

Q ss_pred             hhhhHhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhh---hcCccccccc
Q 008358           62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLK---YSTKEGLTRK  137 (568)
Q Consensus        62 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~---~~~~~~~~~~  137 (568)
                      ..+...+..|+.|.||||.||+.++.|..+.|++ ++++.-.+..+..++|.|+..+..+..+..+.   +.....+|.-
T Consensus       142 ~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  142 DYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD  221 (929)
T ss_pred             HhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence            3334455566666667777777666665555554 34444444445556666666666666666665   3444556666


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCC--------------cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSL--------------SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE  203 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--------------~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~  203 (568)
                      |..|.||||.|+..|+.++++.+|+.|...              .+..|.+|.||||+||+.|+.++++.|+.. +.+++
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~  300 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASIN  300 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCccc
Confidence            666667777777777777777666665432              123456666777777777777777666666 55566


Q ss_pred             ccCcCCChHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcccc--CCCCCCChH
Q 008358          204 ISRSNGKNALHFAARQGHVDVVKALLS-KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM--LPDKFGNTA  280 (568)
Q Consensus       204 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~G~Tp  280 (568)
                      .++.++.||||.||+.|+.+.++.||+ .+-.+.+..|..|.||||+|++.|+.+++++|++.|+...+  ..|.+|+||
T Consensus       301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~Ta  380 (929)
T KOG0510|consen  301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTA  380 (929)
T ss_pred             ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchh
Confidence            666666677777777777777766666 44445566666667777777766677777777776666444  336667777


Q ss_pred             HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHH
Q 008358          281 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI  317 (568)
Q Consensus       281 Lh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~  317 (568)
                      ||+|++.|+..+|++|+. +|+++..+|..|.+++|+
T Consensus       381 LH~Aa~~g~~~av~~Li~-~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  381 LHLAAKYGNTSAVQKLIS-HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhHHHHhccHHHHHHHHH-cCCceeeccccccccccc
Confidence            777777777777776666 667776666666666664

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=310.52  Aligned_cols=289  Identities=15%  Similarity=0.179  Sum_probs=237.9

Q ss_pred             hhhhhHhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhh--hhHHHHHHhhhcCcccccc-
Q 008358           61 GKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEI--RSSVVNELLKYSTKEGLTR-  136 (568)
Q Consensus        61 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~-  136 (568)
                      .......+..|..|.||||+||..|+.++|+.||+ +++.+..+..+.+|+|+|+..+  ..++++.|++.  +++++. 
T Consensus        59 l~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Gadin~~  136 (446)
T PHA02946         59 LHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY--GAKINNS  136 (446)
T ss_pred             HHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCcccc
Confidence            33444556788999999999999999999999997 5667777788889999988765  36888888865  455664 


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCccccCcCCChHHH
Q 008358          137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALH  214 (568)
Q Consensus       137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  214 (568)
                      .|..|.|||| |+..|+.++++.|++.|+++ +..|..|+||||+|+..+  +.+++++|++. +.+++..|.+|.||||
T Consensus       137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH  213 (446)
T PHA02946        137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHDGNTPLH  213 (446)
T ss_pred             cCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHH
Confidence            6889999997 66779999999999999998 778999999999988755  46899999988 6778899999999999


Q ss_pred             HHHHcC--CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCC-HHHHHHHHHcCCcc-------------------ccC
Q 008358          215 FAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-CEVVKLLLEADAAI-------------------VML  272 (568)
Q Consensus       215 ~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~-------------------~~~  272 (568)
                      +|+..|  +.+++++|++ ++++ +.+|..|+||||+|+..++ .+++++|+++|++.                   ++.
T Consensus       214 ~Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~  291 (446)
T PHA02946        214 IVCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIIND  291 (446)
T ss_pred             HHHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHH
Confidence            999886  7899999985 6776 7889999999999999887 58999999987642                   111


Q ss_pred             C-CCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhH
Q 008358          273 P-DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE  351 (568)
Q Consensus       273 ~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  351 (568)
                      . +..|+||||+|+..|+.+++++|++ .|+       .|+||||+|+..+    ..++++.|+.+|+..+.. ..+.++
T Consensus       292 ~g~~~~~TpLh~Aa~~g~~eivk~Ll~-~~~-------~~~t~L~~A~~~~----~~~~v~~Ll~~ga~~n~~-~~G~t~  358 (446)
T PHA02946        292 KGKQYDSTDFKMAVEVGSIRCVKYLLD-NDI-------ICEDAMYYAVLSE----YETMVDYLLFNHFSVDSV-VNGHTC  358 (446)
T ss_pred             cCcccCCCHHHHHHHcCCHHHHHHHHH-CCC-------ccccHHHHHHHhC----HHHHHHHHHHCCCCCCCc-cccccH
Confidence            2 2457899999999999999999998 443       5799999999865    458899999999998764 578889


Q ss_pred             HHHHHHhhhhhhhhhHhH
Q 008358          352 LRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       352 l~~~~~~~~~~~~~~l~~  369 (568)
                      +..++....+++.+.+..
T Consensus       359 l~~a~~~~~~~~~~~ll~  376 (446)
T PHA02946        359 MSECVRLNNPVILSKLML  376 (446)
T ss_pred             HHHHHHcCCHHHHHHHHh
Confidence            988888777777666554

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=310.13  Aligned_cols=273  Identities=23%  Similarity=0.286  Sum_probs=240.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhc--CCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358           76 TELHLAAQRGDLGAVKQILYG--IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH  153 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~--~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~  153 (568)
                      ..|+.|+..|+++.++.|++.  ...+.....+.+|++.|+..|+.++++.|++.  +++++..+..|.||||.|+..|+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A~~~~~   80 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTAIKIGA   80 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCC
Confidence            468999999999999999963  22344556678999999999999999999965  56678889999999999999999


Q ss_pred             HHHHHHHHhcCCCCc----------------------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCCh
Q 008358          154 HAIVQVLLDHDPSLS----------------------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN  211 (568)
Q Consensus       154 ~~iv~~Ll~~~~~~~----------------------~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  211 (568)
                      .+++++|+++|++..                      +..+..|.||||+|+..|+.+++++|+++ +.+++..|.+|.|
T Consensus        81 ~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~t  159 (434)
T PHA02874         81 HDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCY  159 (434)
T ss_pred             HHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCCC
Confidence            999999999876531                      35678899999999999999999999998 6678889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHH
Q 008358          212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE  291 (568)
Q Consensus       212 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~  291 (568)
                      |||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..+. +
T Consensus       160 pLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~  236 (434)
T PHA02874        160 PIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-S  236 (434)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-H
Confidence            999999999999999999999987 67899999999999999999999999999999 78889999999999999865 5


Q ss_pred             HHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358          292 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI  359 (568)
Q Consensus       292 iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~  359 (568)
                      ++++|+.  |++++.+|.+|+||||+|+..+.   ..+++++|+..|++.+.....+.+++..+....
T Consensus       237 ~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~---~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        237 AIELLIN--NASINDQDIDGSTPLHHAINPPC---DIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHHc--CCCCCCcCCCCCCHHHHHHhcCC---cHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            6677764  89999999999999999997543   247899999999999988889999998776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-35  Score=327.86  Aligned_cols=283  Identities=21%  Similarity=0.207  Sum_probs=243.7

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhc----------------
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYS----------------  129 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~----------------  129 (568)
                      .+..|..|.||||+||+.|+.++|++|++ +++.+..+..+.++++.|+..++.++++.|++..                
T Consensus       171 vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~  250 (682)
T PHA02876        171 VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRN  250 (682)
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHc
Confidence            44567889999999999999999999997 5566666667788999999999988888776532                


Q ss_pred             -----------CcccccccCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHH
Q 008358          130 -----------TKEGLTRKNRSGFDPLHIAAVQGHH-AIVQVLLDHDPSLSQTTGPSNATPLVSAATRG-HTAVVNELLS  196 (568)
Q Consensus       130 -----------~~~~~~~~~~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g-~~~~v~~Ll~  196 (568)
                                 .+.+++..|..|+||||+|+..|+. +++++|++.|+++ +..|..|.||||+|+..| +.++++.|+.
T Consensus       251 ~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~  329 (682)
T PHA02876        251 EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIM  329 (682)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence                       2345777888999999999999986 6999999999998 678889999999999999 5899999988


Q ss_pred             cCCCCccccCcCCChHHHHHHHc-CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCC
Q 008358          197 KDGGLLEISRSNGKNALHFAARQ-GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK  275 (568)
Q Consensus       197 ~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~  275 (568)
                      . +.+++..|..|.||||+|+.. ++.++++.|++.|.++ +.+|..|+||||+|+..|+.+++++|+++|++ ++..+.
T Consensus       330 ~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~  406 (682)
T PHA02876        330 L-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQ  406 (682)
T ss_pred             c-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCC
Confidence            8 667888999999999999985 5789999999999988 77899999999999999999999999999999 788899


Q ss_pred             CCChHHHHHHHcCc-HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHH
Q 008358          276 FGNTALHVATRKKR-TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRK  354 (568)
Q Consensus       276 ~G~TpLh~A~~~g~-~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~  354 (568)
                      .|.||||+|+..++ ..++++|++ .|+++|.+|..|+||||+|+..+.   ..+++++|++.|+..+.....+.+++..
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~---~~~iv~lLl~~Gad~n~~d~~g~tpl~~  482 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNC---KLDVIEMLLDNGADVNAINIQNQYPLLI  482 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCC---cHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            99999999987665 467888888 899999999999999999987542   2478899999999998888888888876


Q ss_pred             HHH
Q 008358          355 TVT  357 (568)
Q Consensus       355 ~~~  357 (568)
                      +..
T Consensus       483 a~~  485 (682)
T PHA02876        483 ALE  485 (682)
T ss_pred             HHH
Confidence            654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-35  Score=315.80  Aligned_cols=267  Identities=19%  Similarity=0.240  Sum_probs=230.4

Q ss_pred             hhHhhhcCCCCChHhHHHHHcC---CHHHHHHHHh-cCCccccccCCCCchHHHHHhh-hhHHHHHHhhhcCcccccccC
Q 008358           64 KYVKQVTGRHNDTELHLAAQRG---DLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEI-RSSVVNELLKYSTKEGLTRKN  138 (568)
Q Consensus        64 ~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~-~~~~v~~Ll~~~~~~~~~~~~  138 (568)
                      +...+..+..|.||||.|+..|   +.++++.|++ +.+.+..+..+.+|+|+|+..+ ..++++.|++.  +.+++.+|
T Consensus        37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~--ga~in~~~  114 (471)
T PHA03095         37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA--GADVNAKD  114 (471)
T ss_pred             CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc--CCCCCCCC
Confidence            3344567888999999999998   9999999997 5666667778889999999999 58999999865  56788899


Q ss_pred             CCCCcHHHHHH--HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCccccCcCCChHHH
Q 008358          139 RSGFDPLHIAA--VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALH  214 (568)
Q Consensus       139 ~~g~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  214 (568)
                      ..|+||||+|+  ..++.+++++|+++|+++ +..|..|.||||+|+..+  +.+++++|++++ .+++..|..|.||||
T Consensus       115 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d~~g~t~Lh  192 (471)
T PHA03095        115 KVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLH  192 (471)
T ss_pred             CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCcccCCCCCCHHH
Confidence            99999999999  556889999999999998 678899999999998876  689999999984 455556889999999


Q ss_pred             HHHHc--CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCH--HHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358          215 FAARQ--GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC--EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  290 (568)
Q Consensus       215 ~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~  290 (568)
                      .|+..  ++.++++.|++.|.++ +.+|..|+||||+|+..|+.  .+++.|++.|++ ++.+|..|+||||+|+..|+.
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~  270 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNP  270 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCH
Confidence            99864  7789999999999988 77899999999999998875  678899999999 888999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          291 EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       291 ~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      +++++|++ .|++++.+|.+|+||||+|+..++.    ++++.|++.++..
T Consensus       271 ~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~----~~v~~LL~~~~~~  316 (471)
T PHA03095        271 RACRRLIA-LGADINAVSSDGNTPLSLMVRNNNG----RAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCH----HHHHHHHHhCCCH
Confidence            99999998 7999999999999999999987664    6777777777543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-36  Score=261.25  Aligned_cols=183  Identities=32%  Similarity=0.483  Sum_probs=168.6

Q ss_pred             cccccCC-CCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCC
Q 008358          133 GLTRKNR-SGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK  210 (568)
Q Consensus       133 ~~~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~  210 (568)
                      .++.++. +|+||||+||..|+.+++.+|+.. +..+ +..|..|+||||.||..|+.++|+.|+.+.+.+++..++.|+
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~  107 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQ  107 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCc
Confidence            3455555 999999999999999999999963 4444 566899999999999999999999999998889999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358          211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  290 (568)
Q Consensus       211 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~  290 (568)
                      |+||+|+..|+.+|+++|+++|+.+ +..|..|+||||-|+..|+.+++++|+..|+. +|.+|+.|+||||.|...|+.
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCc
Confidence            9999999999999999999999877 88999999999999999999999999999988 899999999999999889999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 008358          291 EIVTELLSLPDTNVNALTRDHKTALDIAEG  320 (568)
Q Consensus       291 ~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~  320 (568)
                      ++..+|++ .|++++..|++| ||+..|..
T Consensus       186 d~a~lLV~-~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  186 DVAVLLVR-AGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hHHHHHHH-hccceeeccccC-chHHHHHH
Confidence            99999999 899999999999 99888763

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-35  Score=288.81  Aligned_cols=218  Identities=21%  Similarity=0.208  Sum_probs=187.7

Q ss_pred             hcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHH
Q 008358           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIA  148 (568)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~A  148 (568)
                      ..|.+|.||||+|+..|+.++++.|++.                                  +++++..  +|+||||+|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~----------------------------------ga~~n~~--d~~TpLh~A   68 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNA----------------------------------GALKNLL--ENEFPLHQA   68 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHC----------------------------------cCCCcCC--CCCCHHHHH
Confidence            4677888888888888888888888852                                  2223333  368999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCC-ChHHHHHHHcCCHHHHHH
Q 008358          149 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQGHVDVVKA  227 (568)
Q Consensus       149 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~  227 (568)
                      +..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++ +.+++..+..| .||||+|+..|+.+++++
T Consensus        69 a~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~  146 (284)
T PHA02791         69 ATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY  146 (284)
T ss_pred             HHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHH
Confidence            9999999999999999998 67899999999999999999999999998 55677788887 499999999999999999


Q ss_pred             HHcCCCccccccC-CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChH-HHHHHHcCcHHHHHHHhcCCCCCcc
Q 008358          228 LLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNVN  305 (568)
Q Consensus       228 Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~~~g~~~~  305 (568)
                      |++++++..   | ..|.||||+|+..|+.+++++|+++|++ ++.+|..|.|| ||+|+..|+.+++++|++ +|+++|
T Consensus       147 LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in  221 (284)
T PHA02791        147 FLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIY  221 (284)
T ss_pred             HHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCc
Confidence            999876542   3 3589999999999999999999999999 88899999987 999999999999999999 899999


Q ss_pred             cccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358          306 ALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       306 ~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~  340 (568)
                      .+|.+| |+|+.+          +++++|++.-+.
T Consensus       222 ~~~~~~-~~l~~~----------e~~~~ll~~~~~  245 (284)
T PHA02791        222 SVNLEN-VLLDDA----------EIAKMIIEKHVE  245 (284)
T ss_pred             cCcccC-ccCCCH----------HHHHHHHHhhhh
Confidence            999954 777543          688888876554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=306.57  Aligned_cols=278  Identities=23%  Similarity=0.290  Sum_probs=216.1

Q ss_pred             hhhhhhhhhHhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCccccc
Q 008358           57 IDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT  135 (568)
Q Consensus        57 ~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~  135 (568)
                      ++............+..+.+|||+|+..|+.+.++.|++ +.+.+..+..+.||+|+|+..++.+..++|++.  ++++.
T Consensus       104 i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~--~a~~~  181 (929)
T KOG0510|consen  104 IQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINK--GADPC  181 (929)
T ss_pred             HHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhc--CCCCC
Confidence            333333344444556666677777777777777777775 455555566666677777777777755666643  44556


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHh-----cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---------
Q 008358          136 RKNRSGFDPLHIAAVQGHHAIVQVLLD-----HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---------  201 (568)
Q Consensus       136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~-----~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~---------  201 (568)
                      ..|.+|++|+|.|++.|..|+.+..+.     ++..+ +..+..|.+|||.|+..|+.++++.+|+.+...         
T Consensus       182 K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~  260 (929)
T KOG0510|consen  182 KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQ  260 (929)
T ss_pred             cccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHH
Confidence            666677777777777777777777776     34444 456677888899999999999998888875432         


Q ss_pred             -----ccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH-cCCccccCCCC
Q 008358          202 -----LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDK  275 (568)
Q Consensus       202 -----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~  275 (568)
                           ++..|++|.||||+||+.|+.+.++.|+..|+++ +.+++++.||||.|+.+|+.+.|+.|++ .|-.+.+..|-
T Consensus       261 q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~  339 (929)
T KOG0510|consen  261 QEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDL  339 (929)
T ss_pred             HHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccc
Confidence                 3456889999999999999999999999999998 7788999999999999999999999999 67777889999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcc---cccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccc
Q 008358          276 FGNTALHVATRKKRTEIVTELLSLPDTNVN---ALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN  343 (568)
Q Consensus       276 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~---~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  343 (568)
                      .|+||||+|++.|+.++++.|++ .|++.+   ..|.+|+||||.|+..++.    ..++.|+.+|++...
T Consensus       340 ~g~tpLHlaa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~----~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNT----SAVQKLISHGADIGV  405 (929)
T ss_pred             cCCCchhhhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccH----HHHHHHHHcCCceee
Confidence            99999999999999999999999 788877   5699999999999998764    678889999998744

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.4e-35  Score=314.69  Aligned_cols=270  Identities=17%  Similarity=0.140  Sum_probs=218.5

Q ss_pred             hhhc-CCCCChHhHHHHH--cCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhh--hHHHHHHhhhcCcccccccCCC
Q 008358           67 KQVT-GRHNDTELHLAAQ--RGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIR--SSVVNELLKYSTKEGLTRKNRS  140 (568)
Q Consensus        67 ~~~~-~~~g~t~Lh~Aa~--~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~--~~~v~~Ll~~~~~~~~~~~~~~  140 (568)
                      .+.. +..|.||||.|+.  .++.+++++|++ +.+.+..+..+.+|||.|+..++  .++++.|++.  +++++.+|..
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~--GADVN~kD~~  246 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL--GGDMDMKCVN  246 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc--CCCCCCCCCC
Confidence            3445 7789999999865  468999999997 56777777788999999999985  4899999965  5678899999


Q ss_pred             CCcHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 008358          141 GFDPLHIA-------------------------------------AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  183 (568)
Q Consensus       141 g~TpLh~A-------------------------------------a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa  183 (568)
                      |+||||.|                                     +..|+.++++.|+++|+++ +..|..|+||||+|+
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aa  325 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYI  325 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHH
Confidence            99999975                                     4457889999999999997 677889999999876


Q ss_pred             H--cCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH--------------cCCHHHHHHHHcCCCccccccCCCCCCHH
Q 008358          184 T--RGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--------------QGHVDVVKALLSKDPQLARRTDKKGQTAL  247 (568)
Q Consensus       184 ~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--------------~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  247 (568)
                      .  .++.+++++|++. +.+++.+|..|+||||+|+.              .++.+++++|+++|+++ +..|..|+|||
T Consensus       326 a~~~~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPL  403 (764)
T PHA02716        326 LRHNISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNCLGYTPL  403 (764)
T ss_pred             HHhCCCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCcCCCCCChH
Confidence            4  4578999999987 66788899999999998875              36889999999999987 78899999999


Q ss_pred             HHH----HhCCCHHHHHHHHHcCCc-------------------------------------------------------
Q 008358          248 HMA----VKGQSCEVVKLLLEADAA-------------------------------------------------------  268 (568)
Q Consensus       248 h~A----~~~~~~~~v~~Ll~~g~~-------------------------------------------------------  268 (568)
                      |.+    ...++.+++++|++.++.                                                       
T Consensus       404 h~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~  483 (764)
T PHA02716        404 TSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCA  483 (764)
T ss_pred             HHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHH
Confidence            942    235678888888775421                                                       


Q ss_pred             -----cccCCCCCCChHHHHHHHcCcH-----HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc-hhhHHHHHHHHHc
Q 008358          269 -----IVMLPDKFGNTALHVATRKKRT-----EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS-EEASEIKDCLARC  337 (568)
Q Consensus       269 -----~~~~~d~~G~TpLh~A~~~g~~-----~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~-~~~~~i~~~L~~~  337 (568)
                           .++..|..|+||||+|+..|+.     +++++|++ .|+|+|.+|++|+||||+|+..++. ....++++.|++.
T Consensus       484 ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~  562 (764)
T PHA02716        484 IIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDK  562 (764)
T ss_pred             HHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhc
Confidence                 0234577899999999998876     45599998 7999999999999999999987764 2345788899988


Q ss_pred             Ccccc
Q 008358          338 GAVRA  342 (568)
Q Consensus       338 ga~~~  342 (568)
                      |+...
T Consensus       563 ga~~~  567 (764)
T PHA02716        563 RPNVD  567 (764)
T ss_pred             CCCcc
Confidence            87653

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=307.73  Aligned_cols=240  Identities=23%  Similarity=0.242  Sum_probs=202.2

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      +..+.||||.||+.|+.++|+.|++ +.+.+..+..+.+|+|.|+..++.+.++.|+........    ..+.+||+.|+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~  109 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAF  109 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHH
Confidence            4567899999999999999999997 456667777888999999999999999999987544433    45779999999


Q ss_pred             HcCCHH---------------------------------HHHHHHhcCCCCcccCCCC-CCcHHHHHHHcCCHHHHHHHH
Q 008358          150 VQGHHA---------------------------------IVQVLLDHDPSLSQTTGPS-NATPLVSAATRGHTAVVNELL  195 (568)
Q Consensus       150 ~~g~~~---------------------------------iv~~Ll~~~~~~~~~~~~~-g~tpL~~Aa~~g~~~~v~~Ll  195 (568)
                      ..|+.+                                 ++++|+++|+++ +..+.. |.||||+|+..|+.+++++|+
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            888755                                 555666667776 455566 999999999999999999999


Q ss_pred             HcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC-CCHHHHHHHHHcCCccccCCC
Q 008358          196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG-QSCEVVKLLLEADAAIVMLPD  274 (568)
Q Consensus       196 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~d  274 (568)
                      +. +++++..|..|.||||.|+..|+.++++.|++.|+++ +.+|..|+||||+|+.. ++.+++++|+++|++ ++.++
T Consensus       189 ~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~  265 (477)
T PHA02878        189 SY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKS  265 (477)
T ss_pred             HC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccC
Confidence            88 5677888889999999999999999999999999887 77888999999999865 688999999999998 66666


Q ss_pred             C-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 008358          275 K-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  321 (568)
Q Consensus       275 ~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~  321 (568)
                      . .|+||||+|  .++.+++++|++ .|+|+|.+|..|+||||+|+..
T Consensus       266 ~~~g~TpLh~A--~~~~~~v~~Ll~-~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        266 YILGLTALHSS--IKSERKLKLLLE-YGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCCCCHHHHH--ccCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHH
Confidence            4 799999999  567889999998 8999999999999999999863

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.7e-34  Score=298.84  Aligned_cols=276  Identities=18%  Similarity=0.203  Sum_probs=210.6

Q ss_pred             CChHhHHHHH--cCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           74 NDTELHLAAQ--RGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        74 g~t~Lh~Aa~--~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      +.++||.++.  .++.++|+.|++ +.+.+..+..+.+|+|+|+..++.++++.|++.  +++++.+|..|+||||+|+.
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~--GAdin~~d~~g~TpLh~A~~  114 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTH--GADPNACDKQHKTPLYYLSG  114 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHH
Confidence            4688888763  456788888886 566666677788888888888888888888864  56778888888899988887


Q ss_pred             cC--CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC--CHHHHH
Q 008358          151 QG--HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVK  226 (568)
Q Consensus       151 ~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~  226 (568)
                      .+  ..+++++|+++|++++...|..|.|||| |+..|+.++++.|++. +.+++..|..|+||||.|+..+  +.++++
T Consensus       115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            65  4788888888888886567888888886 6667888888888887 5677888888889998887654  468888


Q ss_pred             HHHcCCCccccccCCCCCCHHHHHHhCC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc-HHHHHHHhcCCCCC
Q 008358          227 ALLSKDPQLARRTDKKGQTALHMAVKGQ--SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEIVTELLSLPDTN  303 (568)
Q Consensus       227 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~-~~iv~~Ll~~~g~~  303 (568)
                      +|++.|+++ +..|.+|+||||+|+..+  +.+++++|++ |++ ++.+|..|+||||+|++.++ .+++++|+. .|++
T Consensus       193 ~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~~~~~~~~~~Ll~-~g~~  268 (446)
T PHA02946        193 WMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKTLSPAHLINKLLS-TSNV  268 (446)
T ss_pred             HHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHhCChHHHHHHHHh-CCCC
Confidence            888888887 677888889999888875  7788888885 777 78888888999998888877 478888887 5543


Q ss_pred             c--------------------cccc-CCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhh
Q 008358          304 V--------------------NALT-RDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKD  362 (568)
Q Consensus       304 ~--------------------~~~d-~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~  362 (568)
                      +                    +..+ ..|+||||+|+..++.    +++++|++.|+       .+++++..++.....+
T Consensus       269 ~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~----eivk~Ll~~~~-------~~~t~L~~A~~~~~~~  337 (446)
T PHA02946        269 ITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSI----RCVKYLLDNDI-------ICEDAMYYAVLSEYET  337 (446)
T ss_pred             CCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCH----HHHHHHHHCCC-------ccccHHHHHHHhCHHH
Confidence            2                    1111 3467888888887653    77788888764       2456777777666666


Q ss_pred             hhhhHh
Q 008358          363 VHTQLE  368 (568)
Q Consensus       363 ~~~~l~  368 (568)
                      +.+.|-
T Consensus       338 ~v~~Ll  343 (446)
T PHA02946        338 MVDYLL  343 (446)
T ss_pred             HHHHHH
Confidence            555543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.9e-34  Score=298.66  Aligned_cols=242  Identities=21%  Similarity=0.229  Sum_probs=218.9

Q ss_pred             CChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           74 NDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      ++++||.|++.|+.++++.|++ +.+++.....+.+|+|.|+..++.++++.|++.+.  +++..+..+.||||.|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA--IPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CccccCCCcccHHHHHHHCC
Confidence            4589999999999999999997 45666666678899999999999999999997654  56667788999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD  232 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  232 (568)
                      +.++++.|++.|+......+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.++++.|++++
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999988777788899999999999999999999998 6678889999999999999999999999999999


Q ss_pred             CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHcCcHHHHHHHhcCCCCCcccc---c
Q 008358          233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG-NTALHVATRKKRTEIVTELLSLPDTNVNAL---T  308 (568)
Q Consensus       233 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G-~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~---d  308 (568)
                      +++ +..|..|+||||+|+..|+.+++++|++.|++ ++..+..| .||+|+|+..|+.+++++|++ .|+|+|..   +
T Consensus       159 ~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n~~~~~~  235 (413)
T PHA02875        159 ACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCNIMFMIE  235 (413)
T ss_pred             CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcchHhhcC
Confidence            987 77899999999999999999999999999999 67777776 589999999999999999999 89999875   6


Q ss_pred             CCCCCHHHHHhhC
Q 008358          309 RDHKTALDIAEGL  321 (568)
Q Consensus       309 ~~G~T~L~~A~~~  321 (568)
                      .+|.||++++...
T Consensus       236 ~~~~t~l~~~~~~  248 (413)
T PHA02875        236 GEECTILDMICNM  248 (413)
T ss_pred             CCchHHHHHHHhh
Confidence            7899999988654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.6e-34  Score=304.23  Aligned_cols=280  Identities=20%  Similarity=0.247  Sum_probs=249.0

Q ss_pred             HHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhh---hhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC-C
Q 008358           79 HLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEI---RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG-H  153 (568)
Q Consensus        79 h~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g-~  153 (568)
                      ..|+..++.++|+.|++ +.+.+..+..+.+++|.++..+   +.++++.|++.  +++++.++..|+||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCc
Confidence            56788999999999997 5666666777889999999998   89999999965  5678999999999999999999 5


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC--CHHHHHHHH
Q 008358          154 HAIVQVLLDHDPSLSQTTGPSNATPLVSAA--TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALL  229 (568)
Q Consensus       154 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll  229 (568)
                      .+++++|+++|+++ +..|..|.||||+|+  ..++.+++++|+++ +.+++..|..|.||||+|+..+  +.++++.|+
T Consensus        97 ~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~-gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095         97 LDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVNALDLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            99999999999998 778999999999999  55689999999998 6678899999999999999876  689999999


Q ss_pred             cCCCccccccCCCCCCHHHHHHhC--CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH--HHHHHHhcCCCCCcc
Q 008358          230 SKDPQLARRTDKKGQTALHMAVKG--QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT--EIVTELLSLPDTNVN  305 (568)
Q Consensus       230 ~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~--~iv~~Ll~~~g~~~~  305 (568)
                      +.|+++.. .|..|+||||.++..  ++.++++.|++.|++ ++.+|..|+||||+|+..|+.  .+++.|++ .|+++|
T Consensus       175 ~~g~~~~~-~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din  251 (471)
T PHA03095        175 DAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLI-AGISIN  251 (471)
T ss_pred             HcCCCCcc-cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCC
Confidence            99999844 499999999999864  788999999999999 899999999999999999875  57888888 899999


Q ss_pred             cccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358          306 ALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       306 ~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                      .+|..|+||||+|+..++.    +++++|++.|++.+.....+.+++..++.....++...+-.
T Consensus       252 ~~d~~g~TpLh~A~~~~~~----~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        252 ARNRYGQTPLHYAAVFNNP----RACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             CcCCCCCCHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999987654    78889999999999888899999999988877777665543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-34  Score=246.60  Aligned_cols=205  Identities=29%  Similarity=0.331  Sum_probs=183.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCC-CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDP-SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  219 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  219 (568)
                      +.++.+.+++.....-|+.+++..+ .++...|.+|+||||+||+.||.+++.+|+...+..++..|..|+||||+||..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            5678888999888899999999988 665566669999999999999999999999877778888899999999999999


Q ss_pred             CCHHHHHHHHcC-CCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          220 GHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       220 g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      |+.++|+.|+.+ ++++ +..+..|+|+||+|+..|+.+++++|+++|+. ++.+|..|.||||-|+..|..+++++|+.
T Consensus        83 g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             CcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHh
Confidence            999999999999 8887 88899999999999999999999999999988 89999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHH
Q 008358          299 LPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR  353 (568)
Q Consensus       299 ~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~  353 (568)
                       .|+.+|.+|..|+||||.|..-++.    +....|.+.||.....++.+ ++++
T Consensus       161 -~~a~~n~qDk~G~TpL~~al~e~~~----d~a~lLV~~gAd~~~edke~-t~~~  209 (226)
T KOG4412|consen  161 -QGAPLNTQDKYGFTPLHHALAEGHP----DVAVLLVRAGADTDREDKEG-TALR  209 (226)
T ss_pred             -cCCCCCcccccCccHHHHHHhccCc----hHHHHHHHhccceeeccccC-chHH
Confidence             7899999999999999999554443    56667889999887777655 5443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.6e-33  Score=299.90  Aligned_cols=290  Identities=16%  Similarity=0.154  Sum_probs=236.0

Q ss_pred             CChHhHHH-----HHcCCHHHHHHHHhc--CCcccc-ccCCCCchHHHHHh--hhhHHHHHHhhhcCcccccccCCCCCc
Q 008358           74 NDTELHLA-----AQRGDLGAVKQILYG--IDSQMV-GNLSGAEFDTEVAE--IRSSVVNELLKYSTKEGLTRKNRSGFD  143 (568)
Q Consensus        74 g~t~Lh~A-----a~~g~~~~v~~LL~~--~~~~~~-~~~~~~~l~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~~~g~T  143 (568)
                      +..+++..     .+.++.+++++|++.  .+.+.. +..+.+|+|.|+..  ++.++++.|++.  +++++.+|..|+|
T Consensus       137 d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~T  214 (764)
T PHA02716        137 DMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLIT  214 (764)
T ss_pred             cchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            45555554     457999999999975  455555 56677899987654  467999999965  6789999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHhcCCCCcccCCCCCCcHHHHH-------------------------------------HH
Q 008358          144 PLHIAAVQGH--HAIVQVLLDHDPSLSQTTGPSNATPLVSA-------------------------------------AT  184 (568)
Q Consensus       144 pLh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A-------------------------------------a~  184 (568)
                      |||+|+..|+  .++|+.|+++|+++ +..|..|+||||+|                                     +.
T Consensus       215 PLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~  293 (764)
T PHA02716        215 PLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLAR  293 (764)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence            9999999995  59999999999998 67899999999975                                     34


Q ss_pred             cCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH--cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHh----------
Q 008358          185 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK----------  252 (568)
Q Consensus       185 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----------  252 (568)
                      .|+.++++.|+++ +.+++.+|.+|+||||+|+.  .++.+++++|++.|+++ +.+|..|+||||+|+.          
T Consensus       294 ~g~leiVklLLe~-GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~  371 (764)
T PHA02716        294 NIDISVVYSFLQP-GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDP  371 (764)
T ss_pred             cCCHHHHHHHHhC-CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccc
Confidence            5788899999987 66788999999999999864  46899999999999988 7889999999999875          


Q ss_pred             ----CCCHHHHHHHHHcCCccccCCCCCCChHHHHH----HHcCcHHHHHHHhcCC------------------------
Q 008358          253 ----GQSCEVVKLLLEADAAIVMLPDKFGNTALHVA----TRKKRTEIVTELLSLP------------------------  300 (568)
Q Consensus       253 ----~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A----~~~g~~~iv~~Ll~~~------------------------  300 (568)
                          .++.+++++|+++|++ ++.+|..|+||||.+    ...++.+++++|++..                        
T Consensus       372 ~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~l  450 (764)
T PHA02716        372 ETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCII  450 (764)
T ss_pred             cccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhH
Confidence                3689999999999999 899999999999942    3356788888887621                        


Q ss_pred             ------------------------------------CCCcccccCCCCCHHHHHhhCCCchh-hHHHHHHHHHcCccccc
Q 008358          301 ------------------------------------DTNVNALTRDHKTALDIAEGLPSSEE-ASEIKDCLARCGAVRAN  343 (568)
Q Consensus       301 ------------------------------------g~~~~~~d~~G~T~L~~A~~~~~~~~-~~~i~~~L~~~ga~~~~  343 (568)
                                                          +.++|..|..|+||||+|+..+.... ..+++++|++.|+..+.
T Consensus       451 hh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~  530 (764)
T PHA02716        451 HHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI  530 (764)
T ss_pred             HHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc
Confidence                                                12345668899999999998765432 35778999999999999


Q ss_pred             ccCCChhHHHHHHHhhhh-----hhhhhHhH
Q 008358          344 ELNQPRDELRKTVTQIKK-----DVHTQLEQ  369 (568)
Q Consensus       344 ~~~~~~~~l~~~~~~~~~-----~~~~~l~~  369 (568)
                      ..+.+.++++.++.+.+.     ++.+.+-+
T Consensus       531 ~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~  561 (764)
T PHA02716        531 PTKNGVTPLMLTMRNNRLSGHQWYIVKNILD  561 (764)
T ss_pred             cCCCCCCHHHHHHHcCCccccHHHHHHHHHh
Confidence            999999999999886643     55554443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.4e-33  Score=271.58  Aligned_cols=212  Identities=20%  Similarity=0.161  Sum_probs=185.4

Q ss_pred             hhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 008358          118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  197 (568)
Q Consensus       118 ~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~  197 (568)
                      ..++++.|+..+    .+.+|.+|+||||+|+..|+.++++.|+++|++.+ ..  +|.||||+|+..|+.+++++|++.
T Consensus        11 ~~~~~~~Lis~~----a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~~--d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791         11 SKQLKSFLSSKD----AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             HHHHHHHHHhCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-CC--CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            445566666432    24578999999999999999999999999999874 33  478999999999999999999987


Q ss_pred             CCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCC-CHHHHHHhCCCHHHHHHHHHcCCccccCCC-C
Q 008358          198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQSCEVVKLLLEADAAIVMLPD-K  275 (568)
Q Consensus       198 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d-~  275 (568)
                       +.+++..|..|+||||+|+..|+.++++.|++.++++ +..+..|+ ||||+|+..|+.+++++|++++++.   .| .
T Consensus        84 -Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~  158 (284)
T PHA02791         84 -GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLA  158 (284)
T ss_pred             -CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccc
Confidence             6778889999999999999999999999999999998 56677774 8999999999999999999988763   23 3


Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCH-HHHHhhCCCchhhHHHHHHHHHcCcccccccC
Q 008358          276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA-LDIAEGLPSSEEASEIKDCLARCGAVRANELN  346 (568)
Q Consensus       276 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~-L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~  346 (568)
                      .|+||||+|+..|+.+++++|++ .|+++|.+|..|.|| ||+|+..++.    ++++.|+++|+..+..+.
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~----e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDL----EMLQALFKYDINIYSVNL  225 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHCCCCCccCcc
Confidence            58999999999999999999999 899999999999987 9999998764    789999999998876654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=303.39  Aligned_cols=287  Identities=20%  Similarity=0.221  Sum_probs=249.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           74 NDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      ..++|+.|+..|+.++++.|++ +.+.+..+..+.+|+|+|+..|+.++|+.|++.  +++++..+..|.||||+|+..|
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~--Gad~n~~~~~g~t~L~~A~~~~  222 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY--GADVNIIALDDLSVLECAVDSK  222 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCccCCCCCCHHHHHHHcC
Confidence            3578999999999999999997 566666777788999999999999999999975  5667888999999999999999


Q ss_pred             CHHHHHHHHhcCCCCc----------------------------ccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcc
Q 008358          153 HHAIVQVLLDHDPSLS----------------------------QTTGPSNATPLVSAATRGHT-AVVNELLSKDGGLLE  203 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~----------------------------~~~~~~g~tpL~~Aa~~g~~-~~v~~Ll~~~~~~~~  203 (568)
                      +.++++.|++.++++.                            +..|..|.||||+|+..|+. +++++|++. +.+++
T Consensus       223 ~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin  301 (682)
T PHA02876        223 NIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER-GADVN  301 (682)
T ss_pred             CHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            9999888776654421                            35567899999999999986 588888877 67788


Q ss_pred             ccCcCCChHHHHHHHcC-CHHHHHHHHcCCCccccccCCCCCCHHHHHHhC-CCHHHHHHHHHcCCccccCCCCCCChHH
Q 008358          204 ISRSNGKNALHFAARQG-HVDVVKALLSKDPQLARRTDKKGQTALHMAVKG-QSCEVVKLLLEADAAIVMLPDKFGNTAL  281 (568)
Q Consensus       204 ~~d~~g~tpLh~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~d~~G~TpL  281 (568)
                      ..|.+|.||||+|+..| ..++++.|+..|+++ +..|..|.||||+|+.. ++.+++++|++.|++ ++.+|..|+|||
T Consensus       302 ~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpL  379 (682)
T PHA02876        302 AKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPI  379 (682)
T ss_pred             CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHH
Confidence            99999999999999999 599999999999998 78899999999999985 578999999999999 899999999999


Q ss_pred             HHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhh-h
Q 008358          282 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI-K  360 (568)
Q Consensus       282 h~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~-~  360 (568)
                      |+|+..|+.+++++|++ .|++++..+..|.||||+|+..+..   ..+++.|++.|+..+..+..+.++++.++... .
T Consensus       380 h~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~---~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        380 HYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNP---YMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             HHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCH---HHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCc
Confidence            99999999999999999 8999999999999999999875442   35678999999999988899999999988754 3


Q ss_pred             hhhhhhHhH
Q 008358          361 KDVHTQLEQ  369 (568)
Q Consensus       361 ~~~~~~l~~  369 (568)
                      .++.+.|-+
T Consensus       456 ~~iv~lLl~  464 (682)
T PHA02876        456 LDVIEMLLD  464 (682)
T ss_pred             HHHHHHHHH
Confidence            455555543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=294.47  Aligned_cols=274  Identities=23%  Similarity=0.259  Sum_probs=244.3

Q ss_pred             CCHHHHHHHHhcCCccc-cccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH-----HHHcCCHHHHH
Q 008358           85 GDLGAVKQILYGIDSQM-VGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI-----AAVQGHHAIVQ  158 (568)
Q Consensus        85 g~~~~v~~LL~~~~~~~-~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~-----Aa~~g~~~iv~  158 (568)
                      ...+.++.+++..+... .+..+.+|++.|+..++.++++.|++.  +.+++..+..|.||||+     |+..|+.++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~   90 (480)
T PHA03100         13 IKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVK   90 (480)
T ss_pred             HHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHHhhchHHHHH
Confidence            44567777776443333 334566899999999999999999976  46678889999999999     99999999999


Q ss_pred             HHHhcCCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC--CHHHHHHHHcCCCc
Q 008358          159 VLLDHDPSLSQTTGPSNATPLVSAA--TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQ  234 (568)
Q Consensus       159 ~Ll~~~~~~~~~~~~~g~tpL~~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~  234 (568)
                      +|+++|+++ +..|..|.||||+|+  ..|+.+++++|+++ +.+++..+..|.||||.|+..|  +.++++.|+++|++
T Consensus        91 ~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d  168 (480)
T PHA03100         91 LLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD  168 (480)
T ss_pred             HHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC
Confidence            999999999 788999999999999  99999999999998 6678889999999999999999  99999999999999


Q ss_pred             cccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCC------ChHHHHHHHcCc--HHHHHHHhcCCCCCccc
Q 008358          235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG------NTALHVATRKKR--TEIVTELLSLPDTNVNA  306 (568)
Q Consensus       235 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G------~TpLh~A~~~g~--~~iv~~Ll~~~g~~~~~  306 (568)
                      + +..|..|.||||+|+..|+.+++++|+++|++ ++..+..|      .||||+|+..|+  .+++++|++ .|+++|.
T Consensus       169 i-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~  245 (480)
T PHA03100        169 I-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINI  245 (480)
T ss_pred             c-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCC
Confidence            7 77788999999999999999999999999999 78888888      999999999999  999999999 8999999


Q ss_pred             ccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358          307 LTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       307 ~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                      +|..|.||||+|+..++    .++++.|++.|++.+.....+.+++..++.....++.+.+-+
T Consensus       246 ~d~~g~TpL~~A~~~~~----~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        246 KDVYGFTPLHYAVYNNN----PEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             CCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            99999999999998765    478899999999888888889999998888777776665554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-32  Score=288.34  Aligned_cols=227  Identities=20%  Similarity=0.227  Sum_probs=208.1

Q ss_pred             CCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC
Q 008358          107 GAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  186 (568)
Q Consensus       107 ~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g  186 (568)
                      ...++.|+..|+.++++.|++.  +.+++.++..|.||||+|+..|+.+++++|+++|+++ +..+..+.||||.|+..|
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEG   79 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCC
Confidence            4678999999999999999975  5667888889999999999999999999999999987 566788999999999999


Q ss_pred             CHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC
Q 008358          187 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  266 (568)
Q Consensus       187 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  266 (568)
                      +.++++.|++.+....+..+.+|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++|
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999976665667788999999999999999999999999998 778999999999999999999999999999


Q ss_pred             CccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC-CHHHHHhhCCCchhhHHHHHHHHHcCccccc
Q 008358          267 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK-TALDIAEGLPSSEEASEIKDCLARCGAVRAN  343 (568)
Q Consensus       267 ~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~-T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  343 (568)
                      ++ ++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+..+..    +++++|+++|++.+.
T Consensus       159 ~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~  230 (413)
T PHA02875        159 AC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI  230 (413)
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence            99 88899999999999999999999999999 8999999998875 889999987654    789999999998753

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-32  Score=291.79  Aligned_cols=256  Identities=16%  Similarity=0.200  Sum_probs=214.0

Q ss_pred             CCCChHhHHHHHcC--CHHHHHHHHhc-CCccccccCCCCchHHHHHh------hhhHHHHHHhhhcCcccccccCCCCC
Q 008358           72 RHNDTELHLAAQRG--DLGAVKQILYG-IDSQMVGNLSGAEFDTEVAE------IRSSVVNELLKYSTKEGLTRKNRSGF  142 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g--~~~~v~~LL~~-~~~~~~~~~~~~~l~~a~~~------~~~~~v~~Ll~~~~~~~~~~~~~~g~  142 (568)
                      ..|.||||.++..+  +.++|+.||+. ++.+. ...+.+|++.++..      ++.++++.|++.  +++++.+|..|.
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~-~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~  109 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY-KGYIETPLCAVLRNREITSNKIKKIVKLLLKF--GADINLKTFNGV  109 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC-CCCCCCcHHHHHhccCcchhhHHHHHHHHHHC--CCCCCCCCCCCC
Confidence            46889998766543  68999999984 44443 34568899988764      356899999965  567899999999


Q ss_pred             cHHHHHHHc---CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCccc-cCcCCChHHHHH
Q 008358          143 DPLHIAAVQ---GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR--GHTAVVNELLSKDGGLLEI-SRSNGKNALHFA  216 (568)
Q Consensus       143 TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~--g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A  216 (568)
                      ||||.|+..   |+.+++++|+++|++++...|..|.||||+|+..  ++.+++++|++++ .+++. .+..|.||||.|
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G-adi~~~~~~~g~tpL~~a  188 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG-VNLFEKTSLYGLTPMNIY  188 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCccccccccCCChHHHH
Confidence            999988765   6899999999999998667889999999999865  6899999999984 55555 678999999999


Q ss_pred             HHcC----CHHHHHHHHcCCCccccccCCCCCCHHHHHHhC------CCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 008358          217 ARQG----HVDVVKALLSKDPQLARRTDKKGQTALHMAVKG------QSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  286 (568)
Q Consensus       217 ~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~------~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~  286 (568)
                      ++.+    +.+++++|+++|+++ +..|..|.|+||.++..      +..+++++|+. +++ ++.+|..|+||||+|+.
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~  265 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAK  265 (494)
T ss_pred             HhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHH
Confidence            8764    899999999999998 67788899999987754      35678887665 687 89999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 008358          287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  339 (568)
Q Consensus       287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga  339 (568)
                      .|+.+++++|++ .|+|+|.+|..|+||||+|+..++.    ++++.|++.+.
T Consensus       266 ~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~----~iv~~LL~~~p  313 (494)
T PHA02989        266 VDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNI----DMLNRILQLKP  313 (494)
T ss_pred             hcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCH----HHHHHHHhcCC
Confidence            999999999999 8999999999999999999987764    56677776553

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=5.2e-32  Score=276.44  Aligned_cols=210  Identities=30%  Similarity=0.421  Sum_probs=191.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHH
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA  155 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~  155 (568)
                      +-++.|++.|+++.|+.|++.                                 .+.+++..|.+|.|+||+||.+++.+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~---------------------------------~g~~v~~~D~~g~tlLHWAAiNNrl~   92 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVES---------------------------------EGESVNNPDREGVTLLHWAAINNRLD   92 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhh---------------------------------cCcCCCCCCcCCccceeHHHHcCcHH
Confidence            567899999999999999862                                 24567788999999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc
Q 008358          156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  235 (568)
Q Consensus       156 iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  235 (568)
                      ++++|+++|++++.....-+.||||+|+++|+..+|.+|+++ |++++..|.+|.+|||.|++.|+.-++-+||.++.+.
T Consensus        93 v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~  171 (600)
T KOG0509|consen   93 VARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI  171 (600)
T ss_pred             HHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC
Confidence            999999999999766668899999999999999999999998 7889999999999999999999999999999999777


Q ss_pred             ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 008358          236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL  315 (568)
Q Consensus       236 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L  315 (568)
                       +.+|.+|+||||+|+.+|....++.|++.|+.+.-..|+.|+||||+|+..|+.+++.+|++ .|++.+..|.+|+||+
T Consensus       172 -d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g~~~~d~~~~~g~tp~  249 (600)
T KOG0509|consen  172 -DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLE-GGADLDKTNTNGKTPF  249 (600)
T ss_pred             -CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhh-cCCcccccccCCCCHH
Confidence             88999999999999999999889999999999444444999999999999999999995555 8999999999999999


Q ss_pred             HHHhhC
Q 008358          316 DIAEGL  321 (568)
Q Consensus       316 ~~A~~~  321 (568)
                      ++|.+.
T Consensus       250 ~LA~~~  255 (600)
T KOG0509|consen  250 DLAQER  255 (600)
T ss_pred             HHHHHh
Confidence            999765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-31  Score=283.90  Aligned_cols=267  Identities=22%  Similarity=0.234  Sum_probs=223.7

Q ss_pred             hHHHHHcCCHHHHHHHHhcC-----CccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           78 LHLAAQRGDLGAVKQILYGI-----DSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        78 Lh~Aa~~g~~~~v~~LL~~~-----~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      |..+....+.+.+...++..     ........+.+|+|.|+..++.++|+.|++.  +++++.+|..|+||||+||..|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~~g   81 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICKEP   81 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCc
Confidence            45666666665555555321     1111223456799999999999999999975  5678999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc--------------------------------CCC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--------------------------------DGG  200 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~--------------------------------~~~  200 (568)
                      +.++++.|++.+.+...   ..+.+|++.|+..|+.++++.|+..                                .+.
T Consensus        82 ~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~ga  158 (477)
T PHA02878         82 NKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA  158 (477)
T ss_pred             cHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCC
Confidence            99999999998766422   5678999999999887766666543                                145


Q ss_pred             CccccCcC-CChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCCh
Q 008358          201 LLEISRSN-GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT  279 (568)
Q Consensus       201 ~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~T  279 (568)
                      +++..+.+ |.||||+|+..|+.+++++|++.|+++ +..|..|+||||.|+..++.+++++|++.|++ ++.+|..|+|
T Consensus       159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~T  236 (477)
T PHA02878        159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNT  236 (477)
T ss_pred             CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            56677777 999999999999999999999999997 77899999999999999999999999999999 8899999999


Q ss_pred             HHHHHHHc-CcHHHHHHHhcCCCCCcccccC-CCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHH
Q 008358          280 ALHVATRK-KRTEIVTELLSLPDTNVNALTR-DHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  357 (568)
Q Consensus       280 pLh~A~~~-g~~~iv~~Ll~~~g~~~~~~d~-~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  357 (568)
                      |||+|+.. ++.+++++|++ .|+++|.++. .|.||||+|..      ..+++++|+++|++.+.....+.+++..++.
T Consensus       237 pLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~A~~------~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        237 PLHISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHSSIK------SERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHHHcc------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999976 78999999999 8999999986 89999999943      2468899999999999888899999988775


Q ss_pred             h
Q 008358          358 Q  358 (568)
Q Consensus       358 ~  358 (568)
                      +
T Consensus       310 ~  310 (477)
T PHA02878        310 Q  310 (477)
T ss_pred             H
Confidence            3

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.3e-32  Score=263.86  Aligned_cols=188  Identities=26%  Similarity=0.354  Sum_probs=165.1

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhc--CCcccc--------ccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCC
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYG--IDSQMV--------GNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRS  140 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~--~~~~~~--------~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~  140 (568)
                      ..+|-|||-+||++|+.++|++|++.  .++...        .-.+.+|+..|+..||.++|+.|+..+  +++|.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccccc
Confidence            35677999999999999999999972  222211        112345677788889999999999765  778888888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      .-|||-.||.-|+.++|++|+++|+|+ ...|..|.|.||.||.+||.+++++|++. +++++.++..|+|+||.|++.|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~-gADvn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQ-GADVNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHh-CCCcchhcccCchHHHhhhhcc
Confidence            889999999999999999999999998 78999999999999999999999999999 7789999999999999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH
Q 008358          221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  264 (568)
Q Consensus       221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  264 (568)
                      +.+++++|+.+|+.+  .+|..|.|||..|+..|+.++|++|+.
T Consensus       195 ~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999986  457889999999999999988888873

>PHA02798 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.5e-30  Score=279.26  Aligned_cols=258  Identities=16%  Similarity=0.165  Sum_probs=218.1

Q ss_pred             CCCChHhHHHHH--cCCHHHHHHHHh-cCCccccccCCCCchHHHHHh-----hhhHHHHHHhhhcCcccccccCCCCCc
Q 008358           72 RHNDTELHLAAQ--RGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAE-----IRSSVVNELLKYSTKEGLTRKNRSGFD  143 (568)
Q Consensus        72 ~~g~t~Lh~Aa~--~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~-----~~~~~v~~Ll~~~~~~~~~~~~~~g~T  143 (568)
                      ..|.|+++.+..  .++.++|+.|++ +.+.+..+..+.+|++.++..     ++.++++.|++.  +++++.+|..|+|
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~d~~G~T  111 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN--GADINKKNSDGET  111 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCCCCCcCc
Confidence            346677664443  458999999997 566667778888999988764     568999999964  6779999999999


Q ss_pred             HHHHHHHcC---CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcccc-CcCCChHHHHH
Q 008358          144 PLHIAAVQG---HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKDGGLLEIS-RSNGKNALHFA  216 (568)
Q Consensus       144 pLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~---~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A  216 (568)
                      |||+|+..|   +.+++++|+++|+++ +..|..|.||||+|+..|+   .+++++|+++ +.+++.. +..|.||||.+
T Consensus       112 pLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~  189 (489)
T PHA02798        112 PLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCY  189 (489)
T ss_pred             HHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHH
Confidence            999999876   789999999999998 7889999999999999998   9999999998 5666666 45799999998


Q ss_pred             HHc----CCHHHHHHHHcCCCccccccCCCCCCHHH-------HHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358          217 ARQ----GHVDVVKALLSKDPQLARRTDKKGQTALH-------MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  285 (568)
Q Consensus       217 ~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~  285 (568)
                      +..    ++.+++++|+++|+++ +..+..|.++++       .+...++.+++++|+. +++ +|.+|..|+||||+|+
T Consensus       190 ~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~  266 (489)
T PHA02798        190 FKYNIDRIDADILKLFVDNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSV  266 (489)
T ss_pred             HHhccccCCHHHHHHHHHCCCCc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHH
Confidence            764    4899999999999988 667888888877       2345567888888766 577 8999999999999999


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          286 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       286 ~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      ..|+.+++++|++ .|+|+|.+|..|+||||+|+..+.    .++++.|++.++..
T Consensus       267 ~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~----~~iv~~lL~~~~~~  317 (489)
T PHA02798        267 SHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENES----KFIFNSILNKKPNK  317 (489)
T ss_pred             HcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCc----HHHHHHHHccCCCH
Confidence            9999999999999 899999999999999999998665    46777888777654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2e-30  Score=278.76  Aligned_cols=273  Identities=19%  Similarity=0.201  Sum_probs=229.9

Q ss_pred             cCCHHHHHHHHh-cCCccccccCCCCchHHHHHhh--hhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC------CH
Q 008358           84 RGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEI--RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG------HH  154 (568)
Q Consensus        84 ~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g------~~  154 (568)
                      ..+.++|+.||+ +.+.+.. ..+.++++.++..+  +.++|+.|++.  ++++|.++ .+.||||.|+..+      +.
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~--GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN--GADVNYKG-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHc--CCCccCCC-CCCCcHHHHHhccCcchhhHH
Confidence            589999999997 5555554 55777887766554  57999999975  56677766 5799999998754      57


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCc-cccCcCCChHHHHHHHc--CCHHHHHHH
Q 008358          155 AIVQVLLDHDPSLSQTTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL-EISRSNGKNALHFAARQ--GHVDVVKAL  228 (568)
Q Consensus       155 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~-~~~d~~g~tpLh~A~~~--g~~~iv~~L  228 (568)
                      +++++|+++|+++ +..|..|.||||.|+..   |+.+++++|+++ |+++ +..|..|.||||+|+..  ++.+++++|
T Consensus        89 ~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         89 KIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            8999999999998 67889999999988765   689999999999 5667 78899999999998764  689999999


Q ss_pred             HcCCCccccccCCCCCCHHHHHHhC----CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc------CcHHHHHHHhc
Q 008358          229 LSKDPQLARRTDKKGQTALHMAVKG----QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK------KRTEIVTELLS  298 (568)
Q Consensus       229 l~~~~~~~~~~d~~g~t~Lh~A~~~----~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~------g~~~iv~~Ll~  298 (568)
                      +++|+++....+..|.||||+|+..    ++.+++++|+++|++ ++.+|..|.||||.++..      +..+++++|+.
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~  245 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK  245 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence            9999998544688999999999875    489999999999999 888899999999987764      35678887765


Q ss_pred             CCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358          299 LPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       299 ~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                        ++++|.+|..|+||||+|+..++    .+++++|++.|++.+.....+.+++..++.....++.+.+-+
T Consensus       246 --~advn~~d~~G~TpL~~Aa~~~~----~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        246 --YIKINKKDKKGFNPLLISAKVDN----YEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             --CCCCCCCCCCCCCHHHHHHHhcC----HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence              69999999999999999998765    478899999999999988999999999988877776665543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.5e-30  Score=281.14  Aligned_cols=180  Identities=16%  Similarity=0.104  Sum_probs=114.7

Q ss_pred             hhcCCCCChHhHHHHHc---CCHHHHHHHHh-cCCccccccCCCCchHHHHHhh--------------------------
Q 008358           68 QVTGRHNDTELHLAAQR---GDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEI--------------------------  117 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~---g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~--------------------------  117 (568)
                      +..|.+|.||||.|+..   |+.++|+.||+ +.+.+..+..+.+|++.|+..+                          
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            34466666666665443   56666666665 3444444444556666555544                          


Q ss_pred             ---------hhHHHHHHhhhcCcccccccCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCccc--CCCCC---------
Q 008358          118 ---------RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA--VQGHHAIVQVLLDHDPSLSQT--TGPSN---------  175 (568)
Q Consensus       118 ---------~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~--~~~~g---------  175 (568)
                               +.++++.|+.  .+++++.+|..|+||||.|+  ..|+.+++++|+++|++++..  .+..|         
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~--~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVE--HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHH--cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence                     4455555553  35667777888888888543  467888888888888887421  12233         


Q ss_pred             --CcHHHHHHH-----------cCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCH--HHHHHHHcCCCccc---c
Q 008358          176 --ATPLVSAAT-----------RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV--DVVKALLSKDPQLA---R  237 (568)
Q Consensus       176 --~tpL~~Aa~-----------~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~--~iv~~Ll~~~~~~~---~  237 (568)
                        .||||+|+.           .++.+++++|+++ +++++..|.+|.||||+|+.+|+.  ++++.|++ |.+..   .
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence              488888875           4577888888877 567788888888888888888874  68888764 55432   1


Q ss_pred             ccCCCCCCHHHHHH
Q 008358          238 RTDKKGQTALHMAV  251 (568)
Q Consensus       238 ~~d~~g~t~Lh~A~  251 (568)
                      ..|..|.+|+|+|+
T Consensus       262 ~~~~~~~~~~~~a~  275 (661)
T PHA02917        262 IDDLTCCTRGIMAD  275 (661)
T ss_pred             ccCcccccchHHHH
Confidence            23444555555555

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=269.20  Aligned_cols=298  Identities=13%  Similarity=0.094  Sum_probs=188.4

Q ss_pred             hhcCCCCChHhHHHHHcC---CHHHHHHHHh-cCCccccccCCCCchHHHHHhh--hhHHHHHHhhhcCcccccccCCCC
Q 008358           68 QVTGRHNDTELHLAAQRG---DLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEI--RSSVVNELLKYSTKEGLTRKNRSG  141 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g---~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~~g  141 (568)
                      ...|..|.||||+|+..|   +.|+|+.||+ |++.+..+..+.+|||.|+..+  +.++++.|+..+.+++.+..+..+
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            356778999999999886   5899999996 5677777778888999888866  688999998887766666666666


Q ss_pred             CcHHHHHHH--cCCHHHHHHHHh-cCCCCcccCC----CCCCcHHHHHHHcCCHHHHHHHHHcCC---------------
Q 008358          142 FDPLHIAAV--QGHHAIVQVLLD-HDPSLSQTTG----PSNATPLVSAATRGHTAVVNELLSKDG---------------  199 (568)
Q Consensus       142 ~TpLh~Aa~--~g~~~iv~~Ll~-~~~~~~~~~~----~~g~tpL~~Aa~~g~~~~v~~Ll~~~~---------------  199 (568)
                      .+|||.++.  .++.++|++|+. .+.+++...+    ..|.+|+++|...++.++|++|++++.               
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            667766666  666666666664 3344322211    245566666666666666666665533               


Q ss_pred             -------------------------------CCccccCcCCChHHHH--HHHcCCHHHHHHHHc----------------
Q 008358          200 -------------------------------GLLEISRSNGKNALHF--AARQGHVDVVKALLS----------------  230 (568)
Q Consensus       200 -------------------------------~~~~~~d~~g~tpLh~--A~~~g~~~iv~~Ll~----------------  230 (568)
                                                     ++++.+|.+|.||||+  +...|+.|++++|++                
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~  274 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYI  274 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhh
Confidence                                           3334444445555542  223344555555554                


Q ss_pred             ----------------CCCccccc--------------------cCCCCCC---------------------HHHHHHhC
Q 008358          231 ----------------KDPQLARR--------------------TDKKGQT---------------------ALHMAVKG  253 (568)
Q Consensus       231 ----------------~~~~~~~~--------------------~d~~g~t---------------------~Lh~A~~~  253 (568)
                                      ++.+. ..                    .+..|.+                     .||.=.+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~  353 (672)
T PHA02730        275 RGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHY  353 (672)
T ss_pred             hhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhc
Confidence                            23222 11                    2333322                     33333332


Q ss_pred             C---CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCC--CcccccCCCCCHHHH---HhhC
Q 008358          254 Q---SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDT--NVNALTRDHKTALDI---AEGL  321 (568)
Q Consensus       254 ~---~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~----~~iv~~Ll~~~g~--~~~~~d~~G~T~L~~---A~~~  321 (568)
                      +   +.+++++|+++|++ ++. +..|+||||+|+..++    .+++++|++ +|+  ++|.+|.+|+||||.   |...
T Consensus       354 ~~~v~ieIvelLIs~GAd-IN~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs-~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        354 GDMVSIPILRCMLDNGAT-MDK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVE-NNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             CCcCcHHHHHHHHHCCCC-CCc-CCCCCcHHHHHHHHcCCcchHHHHHHHHH-cCCCccccccccCCCchHhHHHHHHhc
Confidence            2   34556666666666 444 3678888888887764    788888888 565  688888888888883   2222


Q ss_pred             CC----chh-hHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358          322 PS----SEE-ASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       322 ~~----~~~-~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                      ..    .+. ..+++++|+.+|+..+..++.+++++..++.....++.+.|-.
T Consensus       431 n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~  483 (672)
T PHA02730        431 NCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE  483 (672)
T ss_pred             cccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            11    111 2356888888888888888888888888877666666555543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.9e-29  Score=270.74  Aligned_cols=271  Identities=14%  Similarity=0.193  Sum_probs=227.7

Q ss_pred             CCHHHHHHHHhcCCccccccCCCCchHHHHHh--hhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc-----CCHHHH
Q 008358           85 GDLGAVKQILYGIDSQMVGNLSGAEFDTEVAE--IRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ-----GHHAIV  157 (568)
Q Consensus        85 g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~--~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~-----g~~~iv  157 (568)
                      =+.+.|+.||+..+++... .+.++++.+...  ++.++++.|++.  +++++.+|..|.||||.|+..     ++.+++
T Consensus        16 ~~~~~v~~ll~~~~~~~~~-~~~~~~~~yl~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         16 VKLSTVKLLIKSCNPNEIV-NEYSIFQKYLQRDSPSTDIVKLFINL--GANVNGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             ccHHHHHHHHhcCChhhhc-ccchHHHHHHhCCCCCHHHHHHHHHC--CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            3578999999866554442 244455545544  467999999965  567899999999999999864     678999


Q ss_pred             HHHHhcCCCCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC---HHHHHHHHcC
Q 008358          158 QVLLDHDPSLSQTTGPSNATPLVSAATRG---HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH---VDVVKALLSK  231 (568)
Q Consensus       158 ~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~  231 (568)
                      ++|+++|+++ +..|..|.||||+|+..+   +.+++++|+++ +++++..|.+|.||||+|+..|+   .+++++|++.
T Consensus        93 ~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~  170 (489)
T PHA02798         93 KILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK  170 (489)
T ss_pred             HHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence            9999999998 678899999999999986   78999999998 67789999999999999999998   9999999999


Q ss_pred             CCccccccCCCCCCHHHHHHhC----CCHHHHHHHHHcCCccccCCCCCCChHHH-------HHHHcCcHHHHHHHhcCC
Q 008358          232 DPQLARRTDKKGQTALHMAVKG----QSCEVVKLLLEADAAIVMLPDKFGNTALH-------VATRKKRTEIVTELLSLP  300 (568)
Q Consensus       232 ~~~~~~~~d~~g~t~Lh~A~~~----~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh-------~A~~~g~~~iv~~Ll~~~  300 (568)
                      |+++....+..|.||||.++..    ++.+++++|+++|++ ++..|..|+|+++       .+...++.+++.+|+.  
T Consensus       171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--  247 (489)
T PHA02798        171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--  247 (489)
T ss_pred             CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--
Confidence            9998444456899999999764    489999999999999 7888889999877       2445677888988876  


Q ss_pred             CCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhH
Q 008358          301 DTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQL  367 (568)
Q Consensus       301 g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  367 (568)
                      ++|+|.+|..|+||||+|+..++    .+++++|++.|++.+.....+.+++..++.....++...+
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~----~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~l  310 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNN----RKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSI  310 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCc----HHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            69999999999999999998765    4789999999999999889999999998887666655444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.4e-28  Score=261.87  Aligned_cols=286  Identities=13%  Similarity=0.175  Sum_probs=202.3

Q ss_pred             hhhhHhhhcCCCCChHhHHHHHcC--CHHHHHHHHhcC---CccccccCCCCchHHHHH--hhhhHHHHHHhhhcCcccc
Q 008358           62 KKKYVKQVTGRHNDTELHLAAQRG--DLGAVKQILYGI---DSQMVGNLSGAEFDTEVA--EIRSSVVNELLKYSTKEGL  134 (568)
Q Consensus        62 ~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~LL~~~---~~~~~~~~~~~~l~~a~~--~~~~~~v~~Ll~~~~~~~~  134 (568)
                      ..+...+..|..|.||||.|+..|  +.|+|+.|++.+   +.+..+..+.++++.++.  .++.++++.|+... +.++
T Consensus        65 s~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~-~~~~  143 (672)
T PHA02730         65 SRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDK-RIRP  143 (672)
T ss_pred             hCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhc-CCCh
Confidence            344445567888999999998866  789999999642   223344445566666665  45556666666311 1111


Q ss_pred             ccc----C-CCCCcHHHHHHHc-----------------------------------------------CCHHHHHHHHh
Q 008358          135 TRK----N-RSGFDPLHIAAVQ-----------------------------------------------GHHAIVQVLLD  162 (568)
Q Consensus       135 ~~~----~-~~g~TpLh~Aa~~-----------------------------------------------g~~~iv~~Ll~  162 (568)
                      +..    + ..|.+|+++|...                                               ++.|++++|++
T Consensus       144 ~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs  223 (672)
T PHA02730        144 SKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLID  223 (672)
T ss_pred             hhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHH
Confidence            111    0 1333444444444                                               45555555555


Q ss_pred             cCCCCcccCCCCCCcHHHH--HHHcCCHHHHHHHHH--------------------------------cCCCCccc----
Q 008358          163 HDPSLSQTTGPSNATPLVS--AATRGHTAVVNELLS--------------------------------KDGGLLEI----  204 (568)
Q Consensus       163 ~~~~~~~~~~~~g~tpL~~--Aa~~g~~~~v~~Ll~--------------------------------~~~~~~~~----  204 (568)
                      +|+++ +..|..|.||||+  |...|+.|++++|++                                + +.+...    
T Consensus       224 ~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~  301 (672)
T PHA02730        224 NNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPY-NVDMEIVNLL  301 (672)
T ss_pred             CCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccC-CcchHHHHHH
Confidence            55555 5577889999995  556688999999998                                2 333333    


Q ss_pred             ----------------cCcCCCh---------------------HHHHHHHcC---CHHHHHHHHcCCCccccccCCCCC
Q 008358          205 ----------------SRSNGKN---------------------ALHFAARQG---HVDVVKALLSKDPQLARRTDKKGQ  244 (568)
Q Consensus       205 ----------------~d~~g~t---------------------pLh~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~  244 (568)
                                      .+..|.+                     .||.-...+   +.+++++|+++|+++ +. +..|.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~-k~~G~  379 (672)
T PHA02730        302 IEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DK-TTDNN  379 (672)
T ss_pred             hhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-Cc-CCCCC
Confidence                            4556655                     677777755   689999999999998 44 47999


Q ss_pred             CHHHHHHhCCC----HHHHHHHHHcCCc-cccCCCCCCChHHHH---HHHcC---------cHHHHHHHhcCCCCCcccc
Q 008358          245 TALHMAVKGQS----CEVVKLLLEADAA-IVMLPDKFGNTALHV---ATRKK---------RTEIVTELLSLPDTNVNAL  307 (568)
Q Consensus       245 t~Lh~A~~~~~----~~~v~~Ll~~g~~-~~~~~d~~G~TpLh~---A~~~g---------~~~iv~~Ll~~~g~~~~~~  307 (568)
                      ||||+|+..++    .+++++|+++|++ .++.+|.+|.||||.   |...+         ..+++++|+. .|+++|.+
T Consensus       380 TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINak  458 (672)
T PHA02730        380 YPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMI  458 (672)
T ss_pred             cHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhcc
Confidence            99999998775    8999999999984 378899999999994   33332         2357999999 89999999


Q ss_pred             cCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccC-CChhHHHHHHH
Q 008358          308 TRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELN-QPRDELRKTVT  357 (568)
Q Consensus       308 d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~-~~~~~l~~~~~  357 (568)
                      |..|+||||+|+..+.    .+++++|+.+|+..+...+ .+.++++.+..
T Consensus       459 D~~G~TPLh~Aa~~~~----~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        459 DNENKTLLYYAVDVNN----IQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             CCCCCCHHHHHHHhCC----HHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence            9999999999998654    4788999999998887765 46777776553

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=4.9e-30  Score=282.62  Aligned_cols=260  Identities=31%  Similarity=0.369  Sum_probs=138.0

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHhcCCc-cccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDS-QMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIA  148 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~-~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~A  148 (568)
                      .+..|.||||+|+..|+.+....++...+. ......+.++++.++..++.++++.++..+.  +.+.++..|.||||.|
T Consensus       337 ar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga--~~~~~gk~gvTplh~a  414 (1143)
T KOG4177|consen  337 ARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGA--DPNSAGKNGVTPLHVA  414 (1143)
T ss_pred             cCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccC--CcccCCCCCcceeeeh
Confidence            344445555555555555544333332211 1222333344555555555555555543322  2444444555555555


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHH
Q 008358          149 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG-HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA  227 (568)
Q Consensus       149 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  227 (568)
                      +.+++.++|+.++++|++. +..+..|.||+|.|+..| +.+....+++. +.+++..-..|.||||.|+..|+.++++.
T Consensus       415 a~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~l  492 (1143)
T KOG4177|consen  415 AHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQL  492 (1143)
T ss_pred             hhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCcchhhhhccCCchHHHH
Confidence            5555555555555555444 344444455555555555 44444444433 33444444445555555555555544444


Q ss_pred             ---------------------------------HHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCC
Q 008358          228 ---------------------------------LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD  274 (568)
Q Consensus       228 ---------------------------------Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d  274 (568)
                                                       ++++|.+. +.++..|+||||.|+..|+.++|++|+++|++ ++.+|
T Consensus       493 lle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~  570 (1143)
T KOG4177|consen  493 LLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKD  570 (1143)
T ss_pred             hhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcCCchHHHHhhhCCcc-ccccC
Confidence                                             44444444 44556666666666666666666666666666 56666


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358          275 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       275 ~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~  340 (568)
                      +.|+||||.|+..|+.+|+++|++ +|+++|..|.+|.|||++|...+..    .+.+.|...++.
T Consensus       571 ~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~vna~d~~g~TpL~iA~~lg~~----~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  571 KLGYTPLHQAAQQGHNDIAELLLK-HGASVNAADLDGFTPLHIAVRLGYL----SVVKLLKVVTAT  631 (1143)
T ss_pred             CCCCChhhHHHHcChHHHHHHHHH-cCCCCCcccccCcchhHHHHHhccc----chhhHHHhccCc
Confidence            666666666666666666666666 6666666666666666666666554    344455555554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=6.2e-30  Score=281.83  Aligned_cols=246  Identities=31%  Similarity=0.393  Sum_probs=182.9

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIA  148 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~A  148 (568)
                      .++.|.||+|.|++.|..+.++.++. +.+++.....+-+++|.++..++.++++.+++.  +++.+..+..|+||+|+|
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~--gA~~~~~~~lG~T~lhva  447 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKR--GASPNAKAKLGYTPLHVA  447 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEecc--CCChhhHhhcCCChhhhh
Confidence            34566667777777777777666664 334444444455566666666666666555543  333445555556666666


Q ss_pred             HHcC-CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-----------------------------
Q 008358          149 AVQG-HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD-----------------------------  198 (568)
Q Consensus       149 a~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~-----------------------------  198 (568)
                      +..| ..+++..+++.|.++ +..-..|.||||.|+..||.++++.|++..                             
T Consensus       448 a~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  448 AKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             hhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH
Confidence            6555 555555555555555 444455555555555555555555555432                             


Q ss_pred             ---CCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCC
Q 008358          199 ---GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK  275 (568)
Q Consensus       199 ---~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~  275 (568)
                         +...+.++..|+||||.|+..|+.++|++||+++++. +.+|+.|+||||.|+..|+.+++++|+++|++ +|..|.
T Consensus       527 ~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~-vna~d~  604 (1143)
T KOG4177|consen  527 LEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS-VNAADL  604 (1143)
T ss_pred             hhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCC-CCcccc
Confidence               4556677888999999999999999999999999998 77789999999999999999999999999999 999999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCC-----cccccCCCCCHHHHHhhC
Q 008358          276 FGNTALHVATRKKRTEIVTELLSLPDTN-----VNALTRDHKTALDIAEGL  321 (568)
Q Consensus       276 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~-----~~~~d~~G~T~L~~A~~~  321 (568)
                      +|.||||+|++.|+.+++++|+. .+.+     ....+..|.+|.+++...
T Consensus       605 ~g~TpL~iA~~lg~~~~~k~l~~-~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  605 DGFTPLHIAVRLGYLSVVKLLKV-VTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             cCcchhHHHHHhcccchhhHHHh-ccCccccccchhhhhcccChhhHHHHh
Confidence            99999999999999999999998 6777     778889999999998765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=5e-28  Score=247.35  Aligned_cols=207  Identities=26%  Similarity=0.249  Sum_probs=183.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHHHHc
Q 008358          142 FDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQ  219 (568)
Q Consensus       142 ~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~  219 (568)
                      .+-++.|+.+|+.+-|+.|++. |.++ +..|.+|.|+||+||.+++.+++++|+++ ++++|..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHc
Confidence            4568899999999999999999 7777 67888999999999999999999999999 45566666 7789999999999


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358          220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  299 (568)
Q Consensus       220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  299 (568)
                      |+..++.+|+++|+++ +.+|.+|.+|||+|++.++.-.|-+|+.++++ ++.+|.+|+||||+|+.+|....++.||+ 
T Consensus       123 G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~-  199 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLK-  199 (600)
T ss_pred             CcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHH-
Confidence            9999999999999998 88999999999999999999999999999988 99999999999999999999988999998 


Q ss_pred             CCCCccccc-CCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHH
Q 008358          300 PDTNVNALT-RDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  357 (568)
Q Consensus       300 ~g~~~~~~d-~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  357 (568)
                      .|+.++..| ++|+||||.|+..++...    +..+.+.|+.....+..+++++..+.+
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~----v~Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTA----VKLLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcce----EehhhhcCCcccccccCCCCHHHHHHH
Confidence            899999988 899999999999887643    335666777766666667777655443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1e-27  Score=227.18  Aligned_cols=176  Identities=18%  Similarity=0.214  Sum_probs=156.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCccccC-cCCChHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISR-SNGKNALH  214 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh  214 (568)
                      ...+.||||.|+..|+.++|+.|++..    +..|..|.||||+|+..+  +.+++++|+++ +.+++..+ ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHH
Confidence            456789999999999999999999863    456788999999999854  89999999998 56677776 58999999


Q ss_pred             HHHHc---CCHHHHHHHHcCCCccccccCCCCCCHHHHHHh--CCCHHHHHHHHHcCCccccCCCCCCChHHHH-HHHcC
Q 008358          215 FAARQ---GHVDVVKALLSKDPQLARRTDKKGQTALHMAVK--GQSCEVVKLLLEADAAIVMLPDKFGNTALHV-ATRKK  288 (568)
Q Consensus       215 ~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~-A~~~g  288 (568)
                      +|+..   ++.+++++|+++|+++ +..|.+|.||||.|+.  .++.+++++|++.|++ ++.+|.+|+||||. |+..+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcC
Confidence            98764   4799999999999998 7889999999999986  4689999999999999 88899999999996 56788


Q ss_pred             cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 008358          289 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  321 (568)
Q Consensus       289 ~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~  321 (568)
                      +.+++++|++ .|++++.+|..|+||||+|...
T Consensus       171 ~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        171 DKKIFDFLTS-LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhh
Confidence            9999999999 8999999999999999999864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.9e-27  Score=222.56  Aligned_cols=179  Identities=15%  Similarity=0.169  Sum_probs=156.0

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      ....+.||||.|+..|+.+.|+.|++.                                     ++..|..|.||||+|+
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~-------------------------------------~n~~~~~g~TpLh~a~   59 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF-------------------------------------VNDCNDLYETPIFSCL   59 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh-------------------------------------hhccCccCCCHHHHHH
Confidence            345678999999999999999999841                                     2345778999999999


Q ss_pred             HcC--CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccCcCCChHHHHHHH--cCCH
Q 008358          150 VQG--HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--QGHV  222 (568)
Q Consensus       150 ~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~  222 (568)
                      ..+  +.+++++|+++|++++...+..|.||||+|+..   ++.+++++|+++ +.+++..|.+|.||||.|+.  .++.
T Consensus        60 ~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~  138 (209)
T PHA02859         60 EKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRI  138 (209)
T ss_pred             HcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCH
Confidence            854  899999999999999544346899999998864   479999999988 67889999999999999986  4689


Q ss_pred             HHHHHHHcCCCccccccCCCCCCHHHH-HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 008358          223 DVVKALLSKDPQLARRTDKKGQTALHM-AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK  288 (568)
Q Consensus       223 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g  288 (568)
                      +++++|++.|.++ +..|.+|.||||. |+..++.+++++|+++|++ ++.+|..|.||||+|...+
T Consensus       139 ~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad-i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        139 NVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIFDFLTSLGID-INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhhh
Confidence            9999999999998 7789999999996 5678899999999999999 8899999999999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=7.7e-27  Score=254.99  Aligned_cols=244  Identities=17%  Similarity=0.129  Sum_probs=197.3

Q ss_pred             HHHHHHHHhc-CCccccccCCCCchHHHHHh---hhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCH----HHHH
Q 008358           87 LGAVKQILYG-IDSQMVGNLSGAEFDTEVAE---IRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH----AIVQ  158 (568)
Q Consensus        87 ~~~v~~LL~~-~~~~~~~~~~~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~----~iv~  158 (568)
                      ++.|+.|+.. .+.+..+..+.+++|+|+..   ++.++++.||..  +++++.++..|+||||+|+..|+.    ++++
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            5678888854 44444467788999998665   779999999964  567789999999999999999985    4667


Q ss_pred             HHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH--HcCCHHHHHHHHcCCCccc
Q 008358          159 VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA--RQGHVDVVKALLSKDPQLA  236 (568)
Q Consensus       159 ~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~~~~~~  236 (568)
                      .|++.+... +..+  ..+++|+|+..|+.+++++|+++ +.+++..|.+|+||||.|+  ..|+.+++++|+++|+++.
T Consensus        90 ~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917         90 ALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             HHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            888775432 2222  23778889999999999999988 7889999999999999654  5789999999999999873


Q ss_pred             cccC---CCC-----------CCHHHHHHh-----------CCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH-
Q 008358          237 RRTD---KKG-----------QTALHMAVK-----------GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT-  290 (568)
Q Consensus       237 ~~~d---~~g-----------~t~Lh~A~~-----------~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~-  290 (568)
                       ..|   ..|           .||||+|+.           .++.+++++|+++|++ ++.+|.+|+||||+|+..|+. 
T Consensus       166 -~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        166 -YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             -ccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCc
Confidence             333   234           599999986           4689999999999999 899999999999999999985 


Q ss_pred             -HHHHHHhcCCCCCcc----cccCCCCCHHHHHhhCC-----CchhhHHHHHHHHHcCcc
Q 008358          291 -EIVTELLSLPDTNVN----ALTRDHKTALDIAEGLP-----SSEEASEIKDCLARCGAV  340 (568)
Q Consensus       291 -~iv~~Ll~~~g~~~~----~~d~~G~T~L~~A~~~~-----~~~~~~~i~~~L~~~ga~  340 (568)
                       ++|++|++  |++++    ..|..|.||+++|...+     ......++++.|+++|+.
T Consensus       244 ~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        244 IDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             HHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence             79999975  77765    46677899999998532     113466899999999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=8.2e-28  Score=235.58  Aligned_cols=214  Identities=30%  Similarity=0.406  Sum_probs=176.4

Q ss_pred             HHHHcCCHHHHHHHHhcCCc------cccccCCCCchHHHHHhhhhHHHHHHhhhc-Cc------ccccccCCCCCcHHH
Q 008358           80 LAAQRGDLGAVKQILYGIDS------QMVGNLSGAEFDTEVAEIRSSVVNELLKYS-TK------EGLTRKNRSGFDPLH  146 (568)
Q Consensus        80 ~Aa~~g~~~~v~~LL~~~~~------~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~-~~------~~~~~~~~~g~TpLh  146 (568)
                      .|++.|++..+..|+-+...      ......+++|+.+|+++||.++|++|++.. ..      ...+-..-+|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            68888888888888843221      122345678999999999999999999832 11      113334556888999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK  226 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~  226 (568)
                      .|+..||.++|+.|+++|+++ +.......|||-.||..||.++|++|+++ ++++++.|..|.|.||+||.+||.+|++
T Consensus        90 aAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHHH
Confidence            999999999999999999888 45556677999999999999999999977 7788999999999999999999999999


Q ss_pred             HHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       227 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      +|++.|+++ +.++..|+|+||.+++.|+.+++++|+++|+.+  .+|..|.|||..|+..|+.++|++|++
T Consensus       168 yLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  168 YLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999998 788899999999999999999999999998873  367789999999999999999999986

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=243.47  Aligned_cols=269  Identities=14%  Similarity=0.114  Sum_probs=206.7

Q ss_pred             hcCCCCChHhHH-HHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHH-hhhhHHHHHHhhhcCcc-------------
Q 008358           69 VTGRHNDTELHL-AAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVA-EIRSSVVNELLKYSTKE-------------  132 (568)
Q Consensus        69 ~~~~~g~t~Lh~-Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~-~~~~~~v~~Ll~~~~~~-------------  132 (568)
                      ..+-+|.+++|+ |...|++|+|+.|++ +++.+..++.+.+++++|+. .++.++++.|+..+.+.             
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~  145 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE  145 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence            356678889976 456899999999996 56666666666677788866 58999999999887541             


Q ss_pred             ---------------------cccccCCCCCcHHHHHHHcC-------CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHH
Q 008358          133 ---------------------GLTRKNRSGFDPLHIAAVQG-------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  184 (568)
Q Consensus       133 ---------------------~~~~~~~~g~TpLh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~  184 (568)
                                           .++..|..|.||||+|+..+       +.|++++|+++|+++ +..|..|.||||+|+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~  224 (631)
T PHA02792        146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVD  224 (631)
T ss_pred             hcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHH
Confidence                                 24567888999999999999       899999999999998 6688899999999999


Q ss_pred             cC--CHHHHHHHHHcCC-------------------C--Cc---------------------------------------
Q 008358          185 RG--HTAVVNELLSKDG-------------------G--LL---------------------------------------  202 (568)
Q Consensus       185 ~g--~~~~v~~Ll~~~~-------------------~--~~---------------------------------------  202 (568)
                      +.  ..|+++.|++..-                   .  .+                                       
T Consensus       225 ~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  304 (631)
T PHA02792        225 KCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTD  304 (631)
T ss_pred             cccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhH
Confidence            99  7788877765210                   0  00                                       


Q ss_pred             ----------------------------cccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCC--CCHHHHHHh
Q 008358          203 ----------------------------EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG--QTALHMAVK  252 (568)
Q Consensus       203 ----------------------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g--~t~Lh~A~~  252 (568)
                                                  +........+++.|+..|+.+++++|+++|+++ +..|.+|  .||||.|+.
T Consensus       305 ~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        305 SIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHH
Confidence                                        000112456678888888999999999999887 5566654  588888777


Q ss_pred             CCCHH---HHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC--CC-c--
Q 008358          253 GQSCE---VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL--PS-S--  324 (568)
Q Consensus       253 ~~~~~---~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~--~~-~--  324 (568)
                      ....+   ++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|...  +. .  
T Consensus       384 n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i  461 (631)
T PHA02792        384 IHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEI  461 (631)
T ss_pred             hccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHH
Confidence            66543   57888888888 78889999999999999999999999998 7899999999999999988652  11 1  


Q ss_pred             -hhhHHHHHHHHHcCccc
Q 008358          325 -EEASEIKDCLARCGAVR  341 (568)
Q Consensus       325 -~~~~~i~~~L~~~ga~~  341 (568)
                       +...++++.|+++|...
T Consensus       462 ~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        462 AELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHHHHHHHhcCCCh
Confidence             22346777787777543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.8e-25  Score=227.76  Aligned_cols=203  Identities=18%  Similarity=0.092  Sum_probs=157.6

Q ss_pred             CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCc-----ccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCc
Q 008358          130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS-----QTTGPSNATPLVSAAT--RGHTAVVNELLSKDGGLL  202 (568)
Q Consensus       130 ~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~Aa~--~g~~~~v~~Ll~~~~~~~  202 (568)
                      .+.+++.+..+|     +|+..+..|++++|+.+|++++     ...+..++|+||+++.  .|+.+++++|+++ |+++
T Consensus        71 ~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADI  144 (437)
T PHA02795         71 HRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVI  144 (437)
T ss_pred             cCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCC
Confidence            344566666665     8888888888888888888863     1366678888888888  7888888888888 5555


Q ss_pred             cccCcCCChHHHHHHHcCCHHHHHHHHcCCCcccccc-----CCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCC
Q 008358          203 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT-----DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  277 (568)
Q Consensus       203 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G  277 (568)
                      +.  .++.||||.|+..++.+++++|+++|++..+..     +..|.+++|.|+..++.+++++|+++|++ ++.+|..|
T Consensus       145 n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G  221 (437)
T PHA02795        145 YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGG  221 (437)
T ss_pred             CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCC
Confidence            54  345788888888888888888888887543332     13477888888888888888888888888 78888888


Q ss_pred             ChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc----hhhHHHHHHHHHcCcccc
Q 008358          278 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS----EEASEIKDCLARCGAVRA  342 (568)
Q Consensus       278 ~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~----~~~~~i~~~L~~~ga~~~  342 (568)
                      +||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..++.    ....+++++|++.|+..+
T Consensus       222 ~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        222 RTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            888888888888888888888 7888888888888888888876632    234578888888887544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=227.55  Aligned_cols=214  Identities=16%  Similarity=0.107  Sum_probs=175.9

Q ss_pred             HHHHhhhhHHHHHHhhhcCccc----ccccCCCCCcHHHHHHH--cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 008358          112 TEVAEIRSSVVNELLKYSTKEG----LTRKNRSGFDPLHIAAV--QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  185 (568)
Q Consensus       112 ~a~~~~~~~~v~~Ll~~~~~~~----~~~~~~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~  185 (568)
                      .++..+..++++.|+..+...+    +-.++..++|+||.|+.  .|+.++|++|+++|+++. .  .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn-~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY-K--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC-C--CCCCCHHHHHHHc
Confidence            6777788889998886554432    11578889999999999  899999999999999984 3  3558999999999


Q ss_pred             CCHHHHHHHHHcCCCCcccc-----CcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHH
Q 008358          186 GHTAVVNELLSKDGGLLEIS-----RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK  260 (568)
Q Consensus       186 g~~~~v~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  260 (568)
                      |+.+++++|+.++..+.+..     +..|.+++|.|+..++.+++++|+++|+++ +..|..|+||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999965443332     235889999999999999999999999998 888999999999999999999999


Q ss_pred             HHHHcCCccccCCCCCCChHHHHHHHcCc--------HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 008358          261 LLLEADAAIVMLPDKFGNTALHVATRKKR--------TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  332 (568)
Q Consensus       261 ~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~--------~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~  332 (568)
                      +|+++|++ ++.+|..|+||||+|+..|+        .+++++|++ .|++++..+..+   +..     . ....++++
T Consensus       239 lLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~~~---~~~-----~-~~n~~~ik  307 (437)
T PHA02795        239 WLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKLAI---LNN-----T-IENHDVIK  307 (437)
T ss_pred             HHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhHHh---hhc-----c-cchHHHHH
Confidence            99999999 89999999999999999984        699999998 899988755332   111     0 11345666


Q ss_pred             HHHHcCcc
Q 008358          333 CLARCGAV  340 (568)
Q Consensus       333 ~L~~~ga~  340 (568)
                      .+++++..
T Consensus       308 ~lI~y~~~  315 (437)
T PHA02795        308 LCIKYFMM  315 (437)
T ss_pred             HHHHHHHh
Confidence            76766654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.6e-24  Score=225.88  Aligned_cols=273  Identities=13%  Similarity=0.061  Sum_probs=210.6

Q ss_pred             CCCCChHhHHHHHcCCH----HHHHHHHhcCCccccccCCCCchHH-HHHhhhhHHHHHHhhhcCcccccccCCCCCcHH
Q 008358           71 GRHNDTELHLAAQRGDL----GAVKQILYGIDSQMVGNLSGAEFDT-EVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPL  145 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~----~~v~~LL~~~~~~~~~~~~~~~l~~-a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpL  145 (568)
                      .-+|.||||.=..+.+.    +++-.|+.  +++.....+-.+++. +...++.++|++|+..  ++++|.++..|.|||
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~--GAdvN~~~n~~~~~l  109 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLS--SVDYKNINDFDIFEYLCSDNIDIELLKLLISK--GLEINSIKNGINIVE  109 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHh--CCCcCccCCccHHHHHHHhcccHHHHHHHHHc--CCCcccccCCCCcce
Confidence            34677999998665552    34444443  222222223346654 4456788999999974  778999999999999


Q ss_pred             HHHHH-cCCHHHHHHHHhcCCCCc-----------------------------------ccCCCCCCcHHHHHHHcC---
Q 008358          146 HIAAV-QGHHAIVQVLLDHDPSLS-----------------------------------QTTGPSNATPLVSAATRG---  186 (568)
Q Consensus       146 h~Aa~-~g~~~iv~~Ll~~~~~~~-----------------------------------~~~~~~g~tpL~~Aa~~g---  186 (568)
                      |+|+. .|+.|++++|+++|++..                                   +..|..|.||||+|+..+   
T Consensus       110 ~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~  189 (631)
T PHA02792        110 KYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQD  189 (631)
T ss_pred             eEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcc
Confidence            99976 699999999999998631                                   123556999999999999   


Q ss_pred             ----CHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC--CHHHHHHHHcCC----------------------------
Q 008358          187 ----HTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKD----------------------------  232 (568)
Q Consensus       187 ----~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~----------------------------  232 (568)
                          +.|+++.|+.+ ++.++..|..|.||||+|+.+.  ..++++.|++..                            
T Consensus       190 ~~~~~~~v~k~Li~~-g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~  268 (631)
T PHA02792        190 GYATSLDVINYLISH-EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNY  268 (631)
T ss_pred             cccCCHHHHHHHHhC-CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHH
Confidence                89999999999 6677888999999999999877  566666665421                            


Q ss_pred             ---------------------------------------------------------------CccccccCCCCCCHHHH
Q 008358          233 ---------------------------------------------------------------PQLARRTDKKGQTALHM  249 (568)
Q Consensus       233 ---------------------------------------------------------------~~~~~~~d~~g~t~Lh~  249 (568)
                                                                                     .+.   ....+..++|.
T Consensus       269 iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~---~r~~~~n~~~~  345 (631)
T PHA02792        269 IVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL---YRFKHINKYFQ  345 (631)
T ss_pred             HHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc---ccCCcchHHHH
Confidence                                                                           111   01124567889


Q ss_pred             HHhCCCHHHHHHHHHcCCccccCCCCCC--ChHHHHHHHcCcH---HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 008358          250 AVKGQSCEVVKLLLEADAAIVMLPDKFG--NTALHVATRKKRT---EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  324 (568)
Q Consensus       250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G--~TpLh~A~~~g~~---~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~  324 (568)
                      |+..|+.+++++|+++|++ ++.+|.+|  .||||+|......   +++++|++ .|+++|.+|..|+||||+|+..++ 
T Consensus       346 Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n-  422 (631)
T PHA02792        346 KFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHS-  422 (631)
T ss_pred             HHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCC-
Confidence            9999999999999999999 77788775  6999998776654   35788888 899999999999999999997654 


Q ss_pred             hhhHHHHHHHHHcCcccccccCCChhHHHHHHH
Q 008358          325 EEASEIKDCLARCGAVRANELNQPRDELRKTVT  357 (568)
Q Consensus       325 ~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  357 (568)
                         .+++++|+++|+..+.....+.+++..+..
T Consensus       423 ---~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        423 ---VSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence               478899999999988888888888876654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=3.9e-23  Score=232.92  Aligned_cols=220  Identities=24%  Similarity=0.236  Sum_probs=152.1

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH-HHHHcC
Q 008358           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH-IAAVQG  152 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh-~Aa~~g  152 (568)
                      ++.+|+.||+.|+.+.++.+++..                                .+.++|..|..|+|||| .|+..+
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~--------------------------------~~~~in~~d~~G~t~Lh~~A~~~~   64 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEP--------------------------------KKLNINCPDRLGRSALFVAAIENE   64 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccc--------------------------------cccCCCCcCccchhHHHHHHHhcC
Confidence            347899999999999999998531                                13346667788888888 777788


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCC-----c----cccCcCCChHHHHHHHcC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG---HTAVVNELLSKDGGL-----L----EISRSNGKNALHFAARQG  220 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g---~~~~v~~Ll~~~~~~-----~----~~~d~~g~tpLh~A~~~g  220 (568)
                      +.+++++|+++|.     .+..|.||||.|+..+   ..+++..+.......     .    ......|.||||+|+.+|
T Consensus        65 ~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~  139 (743)
T TIGR00870        65 NLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQ  139 (743)
T ss_pred             hHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhC
Confidence            8888888888775     4567888888887622   223333333332110     0    112245888888888888


Q ss_pred             CHHHHHHHHcCCCcccccc-------------CCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358          221 HVDVVKALLSKDPQLARRT-------------DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  287 (568)
Q Consensus       221 ~~~iv~~Ll~~~~~~~~~~-------------d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~  287 (568)
                      +.++++.|+++|+++....             ...|+||||.|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus       140 ~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       140 NYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVME  218 (743)
T ss_pred             CHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhh
Confidence            8888888888887763211             12578888888888888888888888887 777888888888888877


Q ss_pred             C---------cHHHHHHHhcCCCCC---c----ccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 008358          288 K---------RTEIVTELLSLPDTN---V----NALTRDHKTALDIAEGLPSSEEASEIKDCLAR  336 (568)
Q Consensus       288 g---------~~~iv~~Ll~~~g~~---~----~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~  336 (568)
                      +         ...+.+++++ .+++   .    +..|++|.||||+|+..++.    ++.+.|++
T Consensus       219 ~~~~~~~~~l~~~~~~~l~~-ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~----~l~~lLL~  278 (743)
T TIGR00870       219 NEFKAEYEELSCQMYNFALS-LLDKLRDSKELEVILNHQGLTPLKLAAKEGRI----VLFRLKLA  278 (743)
T ss_pred             hhhhHHHHHHHHHHHHHHHH-HHhccCChHhhhhhcCCCCCCchhhhhhcCCc----cHHHHHHH
Confidence            5         2234444444 2332   3    66788888888888877665    34444444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=3.2e-24  Score=243.10  Aligned_cols=178  Identities=24%  Similarity=0.256  Sum_probs=164.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      .+..+.++||.||..|+.++++.|++.|+++ +..|..|.||||+|+..|+.++++.|+++ +.+++.+|.+|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHH
Confidence            3556789999999999999999999999998 67899999999999999999999999998 677899999999999999


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      +..|+.++++.|++.+...   ....|.++||.|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999877654   245678999999999999999999999999 899999999999999999999999999


Q ss_pred             hcCCCCCcccccCCC-CCHHHHHhhC
Q 008358          297 LSLPDTNVNALTRDH-KTALDIAEGL  321 (568)
Q Consensus       297 l~~~g~~~~~~d~~G-~T~L~~A~~~  321 (568)
                      ++ .|++++..|.+| .||++++...
T Consensus       675 l~-~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        675 IM-NGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HH-cCCCCCCCCCCCCCCHHHHHHHH
Confidence            99 899999999988 9999988653

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=8.2e-25  Score=194.64  Aligned_cols=205  Identities=24%  Similarity=0.282  Sum_probs=179.0

Q ss_pred             HHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 008358          112 TEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV  191 (568)
Q Consensus       112 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v  191 (568)
                      .+...++.+++...+.... ..+...+.+|+.++|.|+-.|+...+..++..+... +..+..+++|+.+++.+.|.+.+
T Consensus        68 ~~~~s~nsd~~v~s~~~~~-~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~  145 (296)
T KOG0502|consen   68 VAVRSGNSDVAVQSAQLDP-DAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVV  145 (296)
T ss_pred             hhhhcCCcHHHHHhhccCC-CCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHH
Confidence            3444445555444444333 334556778999999999999999999999999887 67788999999999999999988


Q ss_pred             HHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcccc
Q 008358          192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM  271 (568)
Q Consensus       192 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~  271 (568)
                      ..+.+   ..+|..|..|.|||.+|+..|+.++|++||+.|+++ ....+...++|.+|+..|..++|++|+..+.| +|
T Consensus       146 ~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VN  220 (296)
T KOG0502|consen  146 DLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVD-VN  220 (296)
T ss_pred             HHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cc
Confidence            77664   357889999999999999999999999999999998 66778889999999999999999999999999 89


Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 008358          272 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  324 (568)
Q Consensus       272 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~  324 (568)
                      ..|-+|-|||-+|++.++.++++.||+ .|++++..+..|.+++++|...+..
T Consensus       221 vyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  221 VYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eeccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH
Confidence            999999999999999999999999999 8999999999999999999988764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=2.1e-24  Score=223.05  Aligned_cols=241  Identities=30%  Similarity=0.334  Sum_probs=207.5

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcC--------------CccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCC
Q 008358           76 TELHLAAQRGDLGAVKQILYGI--------------DSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSG  141 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~--------------~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g  141 (568)
                      +-|-.|++.||.+.+..||+..              ..+..+..+-+.+|+|+.+++..+++.|+++...  ++..|..|
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~--ldl~d~kg   82 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL--LDLCDTKG   82 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh--hhhhhccC
Confidence            5678899999999999999521              1122233455789999999999999999977654  55667899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358          142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  221 (568)
Q Consensus       142 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  221 (568)
                      .+|||+|+..|+.++++.|+.++..+ +..+..|.||||.|+.+||.+++.+|+.+ +.+...+|+++.|+|-.|++.|.
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKK-NADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhc-CCCccccCcccccHHHHHHHhhh
Confidence            99999999999999999999999554 78889999999999999999999999999 66788899999999999999999


Q ss_pred             HHHHHHHHcCCCcc-------ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHH
Q 008358          222 VDVVKALLSKDPQL-------ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  294 (568)
Q Consensus       222 ~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~  294 (568)
                      .++++.|++..-..       ...++-.+.+|||.|+++|+.++++.|++.|.+ +|.....| |+||-|+..|..++|+
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhh
Confidence            99999999873221       123345678999999999999999999999999 77766666 9999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 008358          295 ELLSLPDTNVNALTRDHKTALDIAEGLPS  323 (568)
Q Consensus       295 ~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~  323 (568)
                      +|++ .|++.+.+|.+|+|+|++....+.
T Consensus       239 ~ll~-~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  239 FLLE-IGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             HHHh-hccccccccccchHHHHHHHhcch
Confidence            9999 899999999999999999988765

>PF13962 PGG: Domain of unknown function

Probab=99.91  E-value=3e-24  Score=181.73  Aligned_cols=108  Identities=36%  Similarity=0.595  Sum_probs=91.0

Q ss_pred             hhhhhhcccchhhHHHHHHHHHhhhhccCCCCCCC----CCccccccch-hhHHHHHHhHHHHHHHHHHHHHHHHhcccc
Q 008358          389 REGINNATNSVTVVAVLFATVAFASIFTVPGGDDD----NGKAVVVRRA-SFKIFFIFNAIALFTSLAVVVVQITLVRGE  463 (568)
Q Consensus       389 ~e~l~~~~~~~~~va~liatv~f~a~~~~Pgg~~~----~g~~~~~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~~~~~~  463 (568)
                      +||++++++++++||+|||||||||+||||||+|+    .|+|++.+++ .|++|+++|++||++|+++++++++.....
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            36788899999999999999999999999999955    4999998777 999999999999999999998888422111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008358          464 TKAEKRVVEVINKLMWLASVCTSVAFIASSYIV  496 (568)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  496 (568)
                      .+.....+.+...+||+++++|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            222334566778899999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.9e-24  Score=192.27  Aligned_cols=240  Identities=22%  Similarity=0.236  Sum_probs=205.1

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHhc--CCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYG--IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDP  144 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~--~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~Tp  144 (568)
                      ...++..|+.-+-.|.+.|+.+++...+.-  ..+...+..+-..++.++..++.+.+...|..  +...|..+-.+++|
T Consensus        55 s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN--~~rgnevs~~p~s~  132 (296)
T KOG0502|consen   55 SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTN--GARGNEVSLMPWSP  132 (296)
T ss_pred             HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecc--cccCCccccccCCh
Confidence            335667788888999999999999888852  22223334445567777777777777777754  44567788899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHH
Q 008358          145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV  224 (568)
Q Consensus       145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  224 (568)
                      +.+++...+.+.+..+.+..   .+..|+.|.|||.+|+.+||.++|++||+. ++++....+...++|.+|++.|..++
T Consensus       133 ~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdi  208 (296)
T KOG0502|consen  133 LSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDI  208 (296)
T ss_pred             hhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHH
Confidence            99999999999988887743   467899999999999999999999999998 67788888889999999999999999


Q ss_pred             HHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358          225 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  304 (568)
Q Consensus       225 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  304 (568)
                      |++||.+++++ +..|.+|-|||.+|++.++.++++.|++.|++ ++..|..|++++.+|+..|+. +|+..++ .-+..
T Consensus       209 V~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~lk  284 (296)
T KOG0502|consen  209 VELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIE-KHALK  284 (296)
T ss_pred             HHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHH-HHHHH
Confidence            99999999998 88899999999999999999999999999999 888999999999999999987 8888888 57788


Q ss_pred             ccccCCCCCHHH
Q 008358          305 NALTRDHKTALD  316 (568)
Q Consensus       305 ~~~d~~G~T~L~  316 (568)
                      +.+|+..+||+|
T Consensus       285 l~Q~~~~~~~~~  296 (296)
T KOG0502|consen  285 LCQDSEKRTPLH  296 (296)
T ss_pred             HhhcccCCCCCC
Confidence            888888888875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=5.2e-23  Score=233.27  Aligned_cols=196  Identities=22%  Similarity=0.230  Sum_probs=164.2

Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 008358           84 RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH  163 (568)
Q Consensus        84 ~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~  163 (568)
                      ..+.++-..+.+.... ..+.....+++.|+..|+.++++.|++.  +.+++..|..|+||||+|+..|+.++++.|+++
T Consensus       504 l~~l~v~~ll~~~~~~-~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  580 (823)
T PLN03192        504 LHDLNVGDLLGDNGGE-HDDPNMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH  580 (823)
T ss_pred             hccccHHHHHhhcccc-cCCccchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence            3455544444443322 2222345678888888888888888854  566888999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCC
Q 008358          164 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  243 (568)
Q Consensus       164 ~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  243 (568)
                      |+++ +..|.+|.||||+|+..||.++++.|++.+. ..  .+..|.++||.|+..|+.++++.|+++|+++ +..|.+|
T Consensus       581 gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~-~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G  655 (823)
T PLN03192        581 ACNV-HIRDANGNTALWNAISAKHHKIFRILYHFAS-IS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQG  655 (823)
T ss_pred             CCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCc-cc--CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            9998 7789999999999999999999999997643 22  2356789999999999999999999999998 7889999


Q ss_pred             CCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHcC
Q 008358          244 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG-NTALHVATRKK  288 (568)
Q Consensus       244 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G-~TpLh~A~~~g  288 (568)
                      +||||+|+..|+.+++++|+++|++ ++..|..| .||++++....
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMNGAD-VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999 78888888 99999886543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=6.3e-23  Score=212.23  Aligned_cols=237  Identities=26%  Similarity=0.296  Sum_probs=204.3

Q ss_pred             chHHHHHhhhhHHHHHHhhhcCc-----------ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCc
Q 008358          109 EFDTEVAEIRSSVVNELLKYSTK-----------EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  177 (568)
Q Consensus       109 ~l~~a~~~~~~~~v~~Ll~~~~~-----------~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  177 (568)
                      .+..|+..+..+.+..+|+...+           ...+..|.+|.|+||.|+.+|+.+++++|+++.+-+ ...|..|.+
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~   84 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGIL   84 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcc
Confidence            35567788888888888875432           347888999999999999999999999999998877 567799999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHH
Q 008358          178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  257 (568)
Q Consensus       178 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  257 (568)
                      |||+|+..|+.++++.+|.++ +.++.....|.||||.|+..||.+++.+|+.++++. ..+|..+.|+|.+|++-|..+
T Consensus        85 plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhH
Confidence            999999999999999999995 778888999999999999999999999999999998 678999999999999999999


Q ss_pred             HHHHHHHcCCcc-------ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHH
Q 008358          258 VVKLLLEADAAI-------VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI  330 (568)
Q Consensus       258 ~v~~Ll~~g~~~-------~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i  330 (568)
                      +++.|++..-..       ...++-.+-+|||+|+++|+.++++.|++ +|.++|...++| |+||.|+..+..    ++
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~----ev  236 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKA----EV  236 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcc----hh
Confidence            999999863211       12356678899999999999999999999 999999887765 999999887654    77


Q ss_pred             HHHHHHcCcccccccCCChhHHHH
Q 008358          331 KDCLARCGAVRANELNQPRDELRK  354 (568)
Q Consensus       331 ~~~L~~~ga~~~~~~~~~~~~l~~  354 (568)
                      +..|++.|......+..+++.++.
T Consensus       237 vr~ll~~gin~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  237 VRFLLEIGINTHIKNQHGQTALDI  260 (854)
T ss_pred             hhHHHhhccccccccccchHHHHH
Confidence            888889998877777777766543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=6.1e-22  Score=223.27  Aligned_cols=223  Identities=20%  Similarity=0.116  Sum_probs=174.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc--CCCCcccCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLV-SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~-~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      .++.+|+.|++.|+.+.++.+++.  +.++ +..|..|+|||| .|+.+++.++++.|++++.     .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            467899999999999999999999  6676 678899999999 8888999999999998854     577899999999


Q ss_pred             HHcC---CHHHHHHHHcCCCc-----cc----cccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCC----------
Q 008358          217 ARQG---HVDVVKALLSKDPQ-----LA----RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD----------  274 (568)
Q Consensus       217 ~~~g---~~~iv~~Ll~~~~~-----~~----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d----------  274 (568)
                      +..+   ...++..+...+++     ..    ...+..|.||||+|+.+|+.+++++|+++|++ ++.++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCC
Confidence            9732   23344444444432     11    11234699999999999999999999999998 54432          


Q ss_pred             ----CCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc-----hhhHHHHHHHHHcCccc----
Q 008358          275 ----KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS-----EEASEIKDCLARCGAVR----  341 (568)
Q Consensus       275 ----~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~-----~~~~~i~~~L~~~ga~~----  341 (568)
                          ..|+||||+|+..|+.+++++|++ .|+|+|.+|..|+||||+|+..+..     +....+.+.+...++..    
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH
Confidence                358999999999999999999999 8999999999999999999986522     22344556666665543    


Q ss_pred             ---ccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358          342 ---ANELNQPRDELRKTVTQIKKDVHTQLEQT  370 (568)
Q Consensus       342 ---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  370 (568)
                         ...++.+.+++..+....+.++.+.+-+.
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence               22356778888888888777777766554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=3.9e-22  Score=190.20  Aligned_cols=159  Identities=29%  Similarity=0.314  Sum_probs=121.8

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc-----CCHHHHHHHHcCCCccccccCCCCC
Q 008358          170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ-----GHVDVVKALLSKDPQLARRTDKKGQ  244 (568)
Q Consensus       170 ~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~d~~g~  244 (568)
                      ..|.+|.|+||||+.++++++|+.||+.+-.+++..++-|+||+++++..     .+.++|..|...|.. +..-...|+
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaKAsQ~gQ  341 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAKASQHGQ  341 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chhhhhhcc
Confidence            45667777777777777777777777776677777777777777776632     356677777766533 234456788


Q ss_pred             CHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 008358          245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  324 (568)
Q Consensus       245 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~  324 (568)
                      |+|++|+.+|+.++|+.||..|+| +|.+|.+|.|+|+.|+++||.+|+++||..+++|+...|.+|-|+|.+|...++.
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~  420 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHR  420 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCch
Confidence            888888888888888888888888 8888888888888888888888888888888888888888888888888888776


Q ss_pred             hhhHHH
Q 008358          325 EEASEI  330 (568)
Q Consensus       325 ~~~~~i  330 (568)
                      +....+
T Consensus       421 eIa~ml  426 (452)
T KOG0514|consen  421 EIAVML  426 (452)
T ss_pred             HHHHHH
Confidence            544333

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=2e-22  Score=202.18  Aligned_cols=206  Identities=28%  Similarity=0.386  Sum_probs=168.4

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHH
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA  155 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~  155 (568)
                      -.+..|++.|+.+-|+.||..                                  +.+++..|.+|.|+||-||.-.+.+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~----------------------------------ga~~~~~n~DglTalhq~~id~~~e   87 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR----------------------------------GASPNLCNVDGLTALHQACIDDNLE   87 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc----------------------------------CCCccccCCccchhHHHHHhcccHH
Confidence            356788999999999999852                                  2334677889999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH-------------cC-C
Q 008358          156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR-------------QG-H  221 (568)
Q Consensus       156 iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~-------------~g-~  221 (568)
                      ||++|+++|+++ +..|..|+||||.|+..||.+++++|+++ ++++...+.+|..|+..|..             .| .
T Consensus        88 ~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~  165 (527)
T KOG0505|consen   88 MVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID  165 (527)
T ss_pred             HHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc
Confidence            999999999998 78899999999999999999999999988 44444455555555544321             11 0


Q ss_pred             ------------HHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc
Q 008358          222 ------------VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  289 (568)
Q Consensus       222 ------------~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~  289 (568)
                                  .+=++..+..|... ...+..|-|.||+|+.+|..++.++|++.|.+ ++.+|.+|+||||.|+..|+
T Consensus       166 iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~  243 (527)
T KOG0505|consen  166 IEAARKAEEQTMLDDARQWLNAGAEL-DARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQ  243 (527)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhccccc-cccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhh
Confidence                        11122333456555 55566699999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 008358          290 TEIVTELLSLPDTNVNALTRDHKTALDIAEG  320 (568)
Q Consensus       290 ~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~  320 (568)
                      .+++++|++ +|++.+.++..|.||+++|..
T Consensus       244 ~~~~elL~~-~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  244 EDACELLVE-HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhHHHHHHH-hhcccchhhhcCCCCccchhh
Confidence            999998888 899999999999999999975

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=8.5e-22  Score=187.91  Aligned_cols=164  Identities=30%  Similarity=0.381  Sum_probs=146.6

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCccccCc
Q 008358          133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR-----GHTAVVNELLSKDGGLLEISRS  207 (568)
Q Consensus       133 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~  207 (568)
                      .+|..|.+|+|+||||+.+++.++|+.||+.|..-....|+.|.||+++|+..     .+.++|..|++.+. ..-....
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhh
Confidence            47889999999999999999999999999998766688999999999999864     46789999998743 2223345


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358          208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  287 (568)
Q Consensus       208 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~  287 (568)
                      .|+|+|++|+..|+.++|+.||..|+++ |.+|.+|.|+|+.|+++|+.|++++||....-.+...|.+|.|+|.+|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            7999999999999999999999999998 899999999999999999999999999875544788999999999999999


Q ss_pred             CcHHHHHHHhc
Q 008358          288 KRTEIVTELLS  298 (568)
Q Consensus       288 g~~~iv~~Ll~  298 (568)
                      |+.+|.-+|..
T Consensus       418 gh~eIa~mlYa  428 (452)
T KOG0514|consen  418 GHREIAVMLYA  428 (452)
T ss_pred             CchHHHHHHHH
Confidence            99999988876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.1e-20  Score=162.42  Aligned_cols=145  Identities=29%  Similarity=0.288  Sum_probs=133.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHH
Q 008358          178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  257 (568)
Q Consensus       178 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  257 (568)
                      -+.+|+..+....|+.||+..+..++.+|.+|+||||.|+.+||.+|++.|+..|++. +.+...|+||||.||+.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4688999999999999999989999999999999999999999999999999999998 788999999999999999999


Q ss_pred             HHHHHHHcCCccccCCCCCCChHHHHHHHcCcH-HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 008358          258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRT-EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  324 (568)
Q Consensus       258 ~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~  324 (568)
                      ++-+|+++|+| +|...+...||||+|+..++. ..+++|+..++++...+++.+.||+++|.+.+-.
T Consensus       145 va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            99999999999 888888889999999987665 5677888878999999999999999999876443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.84  E-value=2.4e-21  Score=205.66  Aligned_cols=280  Identities=24%  Similarity=0.261  Sum_probs=172.3

Q ss_pred             hcCCCCChHhHHHHHcCCHHHHHHHHhc-CCcccc-ccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH
Q 008358           69 VTGRHNDTELHLAAQRGDLGAVKQILYG-IDSQMV-GNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH  146 (568)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh  146 (568)
                      .+|+.|.+||.+|+-.||..+|+.|++. ++.... +....+++.+++..++.++|+.||..  +++-..+|....|||.
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~--gankehrnvsDytPls  862 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA--GANKEHRNVSDYTPLS  862 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHh--hccccccchhhcCchh
Confidence            3455566666666666666666666642 222211 22234455556666666666666543  2333444555566666


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPSLSQTT-GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV  225 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  225 (568)
                      +|...|.++++..|+.+|.+++... .+.|.+||+.|..+||.+.++.||+.+.+.......+-+|+|-+|+..|+.+++
T Consensus       863 la~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  863 LARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence            6666666666666666665553322 234566666666666666666666664333223344556666666666666666


Q ss_pred             HHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccC--CCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 008358          226 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML--PDKFGNTALHVATRKKRTEIVTELLSLPDTN  303 (568)
Q Consensus       226 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~--~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  303 (568)
                      .+||.+.+.. +.+-..|-|||+-++..|.+|+-++|+..|+| .|.  .-..-.|+|-+++..||.+.++.|+. ..+.
T Consensus       943 ~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad-~nasPvp~T~dtalti~a~kGh~kfv~~lln-~~at 1019 (2131)
T KOG4369|consen  943 FLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD-TNASPVPNTWDTALTIPANKGHTKFVPKLLN-GDAT 1019 (2131)
T ss_pred             HHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccc-cccCCCCCcCCccceeecCCCchhhhHHhhC-Cccc
Confidence            6666666655 55666777777777777777777777777777 332  12234477778888888888888887 7888


Q ss_pred             cccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHH
Q 008358          304 VNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  357 (568)
Q Consensus       304 ~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  357 (568)
                      ++.+|++|.|+|.+|+.-+..    ....+|.+.+++....++........++.
T Consensus      1020 v~v~NkkG~T~Lwla~~Gg~l----ss~~il~~~~ad~d~qdnr~~S~~maafR 1069 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGAL----SSCPILVSSVADADQQDNRTNSRTMAAFR 1069 (2131)
T ss_pred             eecccCCCCcccchhccCCcc----ccchHHhhcccChhhhhcccccccHHHHH
Confidence            888999999999999876544    44566778888776555544444433333

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.3e-20  Score=170.26  Aligned_cols=136  Identities=15%  Similarity=0.216  Sum_probs=77.2

Q ss_pred             CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHH---HHHHHHcCCCccccccC-CCCC
Q 008358          173 PSNATPLVSAATRGHT----AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD---VVKALLSKDPQLARRTD-KKGQ  244 (568)
Q Consensus       173 ~~g~tpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~d-~~g~  244 (568)
                      ..+.++||.||+.|+.    +++++|++. +..++..|.+|+||||+|+..|+.+   ++++|++.|+++ +.+| ..|+
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~   95 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGN   95 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            3444455555555544    222233333 3334444555555555555555433   255666666655 4444 3566


Q ss_pred             CHHHHHHhCCCHHHHHHHHH-cCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC
Q 008358          245 TALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK  312 (568)
Q Consensus       245 t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~  312 (568)
                      ||||+|+..++.+++++|++ .|++ ++.+|..|+||||+|+..++.+++++|++ +|++++..+..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            66666666666666666664 5665 55566666666666666666666666666 5666666665553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=4.9e-20  Score=168.15  Aligned_cols=145  Identities=15%  Similarity=0.153  Sum_probs=126.0

Q ss_pred             CcccccccCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCc
Q 008358          130 TKEGLTRKNRSGFDPLHIAAVQGHH----AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV---VNELLSKDGGLL  202 (568)
Q Consensus       130 ~~~~~~~~~~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~---v~~Ll~~~~~~~  202 (568)
                      .+.+++..+.++.++||.|++.|+.    +++++|++.|+.+ +..|..|+||||+|+..|+.+.   +++|++. +.++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCC
Confidence            4556667788899999999999998    6777788888887 6778899999999999998654   7889888 5678


Q ss_pred             cccC-cCCChHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCC
Q 008358          203 EISR-SNGKNALHFAARQGHVDVVKALLS-KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN  278 (568)
Q Consensus       203 ~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~  278 (568)
                      +.++ ..|.||||+|+..|+.+++++|+. .+.++ +..|..|+||||+|+..++.+++++|+++|++ ++.++..|.
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~  162 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAV-CDDPLSIGL  162 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcccCCc
Confidence            8887 589999999999999999999995 78877 67899999999999999999999999999999 777777664

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=5.6e-20  Score=168.53  Aligned_cols=130  Identities=25%  Similarity=0.388  Sum_probs=92.9

Q ss_pred             cCcCCChHHHHHHHcCCHHHHHHHHcC------CCccccccCCCCCCHHHHHHhCCC----HHHHHHHHHcCCccccCCC
Q 008358          205 SRSNGKNALHFAARQGHVDVVKALLSK------DPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPD  274 (568)
Q Consensus       205 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~d  274 (568)
                      +|..|.||||+|++.|+.++++.|+..      +.++ +.+|..|+||||+|+..|+    .+++++|++.|++ ++.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCC
Confidence            455677777777777777777766432      2333 5667778888888887777    4777788888877 66666


Q ss_pred             C-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358          275 K-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       275 ~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~  340 (568)
                      . +|+||||+|+..++.+++++|+...|++++.+|.+|+||||+|...+..    ++++.|.++++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~----~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV----AMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH----HHHHHHHHHHHH
Confidence            4 7888888888888888888887645788888888888888888776543    566666666544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=4.1e-20  Score=185.64  Aligned_cols=204  Identities=23%  Similarity=0.235  Sum_probs=169.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHH
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  223 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  223 (568)
                      .+.-|+..|..+=|+.|+..|++. +..+.+|.|+||.+|...+.+||++|+++ ++.++..|.+|+||||.|+..||.+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHH
Confidence            466788999999999999999988 78899999999999999999999999999 6788999999999999999999999


Q ss_pred             HHHHHHcCCCccccccCCCCCCHHHHHHhCCCH--------------------------HHHHHHHHcCCccccCCCCCC
Q 008358          224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSC--------------------------EVVKLLLEADAAIVMLPDKFG  277 (568)
Q Consensus       224 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--------------------------~~v~~Ll~~g~~~~~~~d~~G  277 (568)
                      ++++|++.|+++ ...+.+|..|+..+...-..                          +-++..+..|.+ ....+..|
T Consensus       121 i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG  198 (527)
T KOG0505|consen  121 IVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARG  198 (527)
T ss_pred             HHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-cccccccc
Confidence            999999999998 45677777776655422111                          112333445666 66777779


Q ss_pred             ChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHH
Q 008358          278 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV  356 (568)
Q Consensus       278 ~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~  356 (568)
                      .|.||+|+.+|..++.++|++ .|.+++.+|.+|+||||.|+..+.    .++.++|..+|+........+.+++....
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~----~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQ----EDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhh----HhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            999999999999999999999 899999999999999999998654    46777899999987766666655554433

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.2e-19  Score=166.32  Aligned_cols=95  Identities=16%  Similarity=0.316  Sum_probs=53.8

Q ss_pred             ccccCcCCChHHHHHHHcCC----HHHHHHHHcCCCccccccCC-CCCCHHHHHHhCCCHHHHHHHHH-cCCccccCCCC
Q 008358          202 LEISRSNGKNALHFAARQGH----VDVVKALLSKDPQLARRTDK-KGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDK  275 (568)
Q Consensus       202 ~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~  275 (568)
                      ++..|..|.||||+|+..|+    .+++++|++.++++ +.++. +|+||||+|+..++.+++++|++ .|++ ++..|.
T Consensus        53 in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~  130 (169)
T PHA02741         53 LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNA  130 (169)
T ss_pred             hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCC
Confidence            44445555555555555555    35555555555554 33442 56666666666666666666665 3555 455566


Q ss_pred             CCChHHHHHHHcCcHHHHHHHhc
Q 008358          276 FGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       276 ~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      +|+||||+|+..++.+++++|++
T Consensus       131 ~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741        131 DNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHH
Confidence            66666666666666666666555

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=9e-18  Score=176.74  Aligned_cols=188  Identities=28%  Similarity=0.284  Sum_probs=135.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcC---------CCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccc----cC
Q 008358          143 DPLHIAAVQGHHAIVQVLLDHD---------PSLSQTTGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEI----SR  206 (568)
Q Consensus       143 TpLh~Aa~~g~~~iv~~Ll~~~---------~~~~~~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~----~d  206 (568)
                      .++..|...+..+..+-|+..+         -++ +.+...|.|.||.|..+   ++.++++.|++..+..++.    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            5566666666666666555544         222 33455667777776652   4456677776664433221    11


Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHcCCCccccc--------cC--------------CCCCCHHHHHHhCCCHHHHHHHHH
Q 008358          207 SNGKNALHFAARQGHVDVVKALLSKDPQLARR--------TD--------------KKGQTALHMAVKGQSCEVVKLLLE  264 (568)
Q Consensus       207 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~--------~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll~  264 (568)
                      ..|.||||+|+.+.+.++|++|++.|+|+..+        .|              ..|+.||.+|+..++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            34777777777777777777777777765211        11              137889999999999999999999


Q ss_pred             cCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 008358          265 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSEEASEIKDC  333 (568)
Q Consensus       265 ~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~--~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~  333 (568)
                      +|+| ++.+|.+|||.||..+..-..++..++|+ .|++  ...+|++|.|||-+|++.++.+..++|.+.
T Consensus       262 ~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCC-CCccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999 89999999999999999988899999998 7888  888999999999999998887665555543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.81  E-value=2e-20  Score=198.73  Aligned_cols=260  Identities=22%  Similarity=0.230  Sum_probs=228.4

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH  146 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh  146 (568)
                      ...|+.++|+|-+||..|..++|+.||. +++....+-.+.+|+.++..-+..+++..||..+...+-..-...|-.||+
T Consensus       818 aQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  818 AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM  897 (2131)
T ss_pred             hhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh
Confidence            3468899999999999999999999997 455555556678899999999999999999977655555555677889999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK  226 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~  226 (568)
                      +|...||.+.++.|++.|.+++.....+-+|+|-+|+..|..+++.+||.. .+.+..+-..|.|||+-++..|.+|+-+
T Consensus       898 latmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~AsgGyvdvg~  976 (2131)
T KOG4369|consen  898 LATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMASGGYVDVGN  976 (2131)
T ss_pred             hhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhcCCccccch
Confidence            999999999999999999999877777788999999999999999999988 5677888899999999999999999999


Q ss_pred             HHHcCCCcccc-ccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc
Q 008358          227 ALLSKDPQLAR-RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN  305 (568)
Q Consensus       227 ~Ll~~~~~~~~-~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~  305 (568)
                      +||..|+|... ..-..-.|+|-+++..|+...++.|+..++. +..+|++|+|+|.+|+..|+...+..|++ .++|++
T Consensus       977 ~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~-~~ad~d 1054 (2131)
T KOG4369|consen  977 LLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVS-SVADAD 1054 (2131)
T ss_pred             hhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhh-cccChh
Confidence            99999998732 2233456899999999999999999998888 88899999999999999999999999999 899999


Q ss_pred             cccCCCCCHHHHHhhCCCchhhHHH
Q 008358          306 ALTRDHKTALDIAEGLPSSEEASEI  330 (568)
Q Consensus       306 ~~d~~G~T~L~~A~~~~~~~~~~~i  330 (568)
                      ..|+...+++..|.+.++...++.+
T Consensus      1055 ~qdnr~~S~~maafRKgh~~iVk~m 1079 (2131)
T KOG4369|consen 1055 QQDNRTNSRTMAAFRKGHFAIVKKM 1079 (2131)
T ss_pred             hhhcccccccHHHHHhchhheeccc
Confidence            9999999999999988776554444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.3e-18  Score=171.18  Aligned_cols=153  Identities=15%  Similarity=0.152  Sum_probs=95.2

Q ss_pred             cccCCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCccc---CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc-CcCC
Q 008358          135 TRKNRSGFD-PLHIAAVQGHHAIVQVLLDHDPSLSQT---TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS-RSNG  209 (568)
Q Consensus       135 ~~~~~~g~T-pLh~Aa~~g~~~iv~~Ll~~~~~~~~~---~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g  209 (568)
                      ..+|..|+| +||.|+..|+.+++++|+++|++++..   .+..|.||||+|+..|+.+++++|+++ +++++.. +..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCC
Confidence            445666776 456666778888888888888887432   134667777777777777777777766 4455553 3456


Q ss_pred             ChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc
Q 008358          210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  289 (568)
Q Consensus       210 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~  289 (568)
                      .||||.|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++..+.  |..    .+..+.+|++++   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMIC--DNE----ISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhc--CCc----ccccccChhhhh---cc
Confidence            66666666666666666666666665 455666666666666666555554443  211    344455666553   24


Q ss_pred             HHHHHHHhc
Q 008358          290 TEIVTELLS  298 (568)
Q Consensus       290 ~~iv~~Ll~  298 (568)
                      .+++++|+.
T Consensus       175 ~ei~~~Lis  183 (300)
T PHA02884        175 FDILKILVS  183 (300)
T ss_pred             HHHHHHHHH
Confidence            556665555

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=2.9e-19  Score=161.39  Aligned_cols=141  Identities=16%  Similarity=0.172  Sum_probs=107.4

Q ss_pred             hHhhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcH
Q 008358           65 YVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDP  144 (568)
Q Consensus        65 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~Tp  144 (568)
                      ...+..|.+|.||||+||+.|+.+.+.........                             ..+..++.+|.+|+||
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~-----------------------------~~~~~~~~~d~~g~t~   58 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVTDLLAFKNAISD-----------------------------ENRYLVLEYNRHGKQC   58 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcc-----------------------------hhHHHHHHhcCCCCEE
Confidence            34556788999999999999984222111110000                             0011234568889999


Q ss_pred             HHHHHHcCCH---HHHHHHHhcCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          145 LHIAAVQGHH---AIVQVLLDHDPSLSQTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       145 Lh~Aa~~g~~---~iv~~Ll~~~~~~~~~~~-~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      ||+|+..|+.   +++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|+.+.+.+++..|..|.||||+|+..|
T Consensus        59 Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~  137 (154)
T PHA02736         59 VHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH  137 (154)
T ss_pred             EEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcC
Confidence            9999999987   4688999999998 4555 589999999999999999999998657778888899999999999999


Q ss_pred             CHHHHHHHHcCCCcc
Q 008358          221 HVDVVKALLSKDPQL  235 (568)
Q Consensus       221 ~~~iv~~Ll~~~~~~  235 (568)
                      +.+++++|++.+++.
T Consensus       138 ~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        138 DAKMMNILRAKGAQC  152 (154)
T ss_pred             CHHHHHHHHHcCCCC
Confidence            999999999888764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3e-18  Score=168.59  Aligned_cols=155  Identities=16%  Similarity=0.117  Sum_probs=128.8

Q ss_pred             cCCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcccc----CcCCChHHHHHHHcCCHHHHHHHHcCCCcccccc-CCCC
Q 008358          170 TTGPSNAT-PLVSAATRGHTAVVNELLSKDGGLLEIS----RSNGKNALHFAARQGHVDVVKALLSKDPQLARRT-DKKG  243 (568)
Q Consensus       170 ~~~~~g~t-pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-d~~g  243 (568)
                      ..|..|.| +||.|+..|+.+++++|+++ |++++..    +..|.||||+|+..|+.+++++|+++|+++ +.. +..|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g  104 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAK  104 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCC
Confidence            34555655 56777778999999999999 5567765    468999999999999999999999999998 553 5689


Q ss_pred             CCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 008358          244 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  323 (568)
Q Consensus       244 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~  323 (568)
                      .||||.|+..++.+++++|++.|++ ++.+|..|.||||+|+..++.+++..+..   .   ..+..+.+|++++.    
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~----  173 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICD---N---EISNFYKHPKKILI----  173 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcC---C---cccccccChhhhhc----
Confidence            9999999999999999999999999 88999999999999999999888766543   2   24677888888753    


Q ss_pred             chhhHHHHHHHHHcCcc
Q 008358          324 SEEASEIKDCLARCGAV  340 (568)
Q Consensus       324 ~~~~~~i~~~L~~~ga~  340 (568)
                         ..++.+.|..++..
T Consensus       174 ---n~ei~~~Lish~vl  187 (300)
T PHA02884        174 ---NFDILKILVSHFIL  187 (300)
T ss_pred             ---cHHHHHHHHHHHHH
Confidence               24677888888774

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=5.5e-19  Score=159.53  Aligned_cols=96  Identities=19%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             CcCCChHHHHHHHcCCH---HHHHHHHcCCCccccccC-CCCCCHHHHHHhCCCHHHHHHHHHc-CCccccCCCCCCChH
Q 008358          206 RSNGKNALHFAARQGHV---DVVKALLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEA-DAAIVMLPDKFGNTA  280 (568)
Q Consensus       206 d~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~d~~G~Tp  280 (568)
                      |.+|.||||+|+..|+.   +++++|++.|+++ +..| ..|+||||+|+..++.+++++|++. |++ ++.+|..|+||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tp  129 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTP  129 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCH
Confidence            44455555555555443   2344555555544 3333 3555555555555555555555542 444 45555555555


Q ss_pred             HHHHHHcCcHHHHHHHhcCCCCCc
Q 008358          281 LHVATRKKRTEIVTELLSLPDTNV  304 (568)
Q Consensus       281 Lh~A~~~g~~~iv~~Ll~~~g~~~  304 (568)
                      ||+|+..|+.+++++|++ .|++.
T Consensus       130 L~~A~~~~~~~i~~~Ll~-~ga~~  152 (154)
T PHA02736        130 YYVACERHDAKMMNILRA-KGAQC  152 (154)
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCC
Confidence            555555555555555555 44443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=1.5e-17  Score=143.26  Aligned_cols=145  Identities=28%  Similarity=0.331  Sum_probs=122.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHH
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  223 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  223 (568)
                      -+-+|+..+....|+.||+..++..+.+|.+|.||||.|+.+||.++|+.|+.. +++.+.+...|+||||.||...+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchh
Confidence            356899999999999999999998899999999999999999999999999988 6678888899999999999999999


Q ss_pred             HHHHHHcCCCccccccCCCCCCHHHHHHhCCCH-HHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358          224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSC-EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  290 (568)
Q Consensus       224 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~  290 (568)
                      ++..||++|+++ +.......||||+|+...+. ..+++|+....--.-..+..+.||+.+|-+.+-.
T Consensus       145 va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999999998 77778889999999977655 4466665533222556778899999999876543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=7.5e-19  Score=162.74  Aligned_cols=134  Identities=31%  Similarity=0.412  Sum_probs=112.9

Q ss_pred             HHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358          183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  262 (568)
Q Consensus       183 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  262 (568)
                      |+.|+.--|+.-|+....+.|.-|..|.+|||+||+.||..+++.|+.+|+.+ +..+....||||+|+..|+-++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            44454444555666666778888888999999999999999999999998887 66677778999999999999999999


Q ss_pred             HHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       263 l~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      ++..+| +|..+..|+|||||||..|...+.+-|+. .|+.++.-|++|.|||+.|-
T Consensus        87 l~~kad-vnavnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhc
Confidence            998888 88889999999999999999999999998 89999999999999998874

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=1.2e-16  Score=168.37  Aligned_cols=189  Identities=24%  Similarity=0.302  Sum_probs=154.2

Q ss_pred             cccccccCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCccc----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 008358          131 KEGLTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQT----TGPSNATPLVSAATRGHTAVVNELLSKDGGLLE  203 (568)
Q Consensus       131 ~~~~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~----~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~  203 (568)
                      ..+++.+...|.|.||.|..+   ++.++++.|++.-|.+.+.    ....|+||||.|+.+.+.++|++|++.+ ++++
T Consensus       133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~g-ADV~  211 (782)
T KOG3676|consen  133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAG-ADVH  211 (782)
T ss_pred             hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcC-Cchh
Confidence            356778888999999999974   5669999999998765432    2346999999999999999999999884 4443


Q ss_pred             cc---------C--------------cCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHH
Q 008358          204 IS---------R--------------SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK  260 (568)
Q Consensus       204 ~~---------d--------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  260 (568)
                      .+         |              .-|..||..||..++.+++++|+++++|+ +.+|.+|+|.||..+..-..++..
T Consensus       212 aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~  290 (782)
T KOG3676|consen  212 ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYD  290 (782)
T ss_pred             hHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHH
Confidence            21         1              13789999999999999999999999998 899999999999999999999999


Q ss_pred             HHHHcCCc-cccCCCCCCChHHHHHHHcCcHHHHHHHhcC-C------------CCCcccccC--CCCCHHHHHhhC
Q 008358          261 LLLEADAA-IVMLPDKFGNTALHVATRKKRTEIVTELLSL-P------------DTNVNALTR--DHKTALDIAEGL  321 (568)
Q Consensus       261 ~Ll~~g~~-~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-~------------g~~~~~~d~--~G~T~L~~A~~~  321 (568)
                      +++++|++ +...+|..|-|||-+|++-|+.++.+.+++. .            ..+.+..|.  +.+++|.+.+..
T Consensus       291 ~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  291 LALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             HHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            99999987 4567899999999999999999999999985 1            223444443  445666666543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.5e-17  Score=152.71  Aligned_cols=134  Identities=33%  Similarity=0.450  Sum_probs=102.9

Q ss_pred             HHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q 008358          113 EVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN  192 (568)
Q Consensus       113 a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~  192 (568)
                      .+.+|+.-.|+.-|. ....++|.-|..|.+|||+||+.|+..+|+.|+.+|+.+ +..+....||||+|+.+||.++|+
T Consensus         7 wcregna~qvrlwld-~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    7 WCREGNAFQVRLWLD-DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhhcCCeEEEEEEec-CcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHH
Confidence            344444433443333 234567788888888888888888888888888888887 566777778888888888888888


Q ss_pred             HHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHH
Q 008358          193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA  250 (568)
Q Consensus       193 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  250 (568)
                      .||+. .+++|..+..|.||||+||..|+..+.+-|+..|+.+ +..+++|.|||..|
T Consensus        85 kll~~-kadvnavnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldka  140 (448)
T KOG0195|consen   85 KLLSR-KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHH-hcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhh
Confidence            88877 5677888888888888888888888888888888776 67788888888766

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=4.3e-16  Score=126.63  Aligned_cols=89  Identities=44%  Similarity=0.589  Sum_probs=74.7

Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHH
Q 008358          213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  292 (568)
Q Consensus       213 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~i  292 (568)
                      ||+|++.|+.++++.|++.+.++. .    |+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-L----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-S----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-C----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            788999999999999998877662 2    88899999999999999999999988 78888899999999999999999


Q ss_pred             HHHHhcCCCCCccccc
Q 008358          293 VTELLSLPDTNVNALT  308 (568)
Q Consensus       293 v~~Ll~~~g~~~~~~d  308 (568)
                      +++|++ .|++++.+|
T Consensus        75 ~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHH-TTT-TTSS-
T ss_pred             HHHHHH-cCCCCCCcC
Confidence            999998 688888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=4.8e-15  Score=127.84  Aligned_cols=122  Identities=40%  Similarity=0.634  Sum_probs=69.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      |.+|.||||.|+..|+.++++.|++.+++. ...+..|.+|||.|+..++.++++.|++.+ ...+..+..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHH
Confidence            455667777777666666777776666654 445556666666666666666666666653 233444455555555555


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358          218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  262 (568)
Q Consensus       218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  262 (568)
                      ..++.+++++|++.+.+. +..|..|.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            555555555555554333 33444555555555555555555444

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=6.7e-15  Score=126.93  Aligned_cols=122  Identities=39%  Similarity=0.590  Sum_probs=68.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHH
Q 008358          172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV  251 (568)
Q Consensus       172 ~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  251 (568)
                      |..|.||||+|+..|+.++++.|++.+ ...+..+..|.||||.|+..++.++++.|++.++.. +..+..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            345556666666666666666665552 223445555556666666666566666666555443 344455556666666


Q ss_pred             hCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       252 ~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      ..++.+++++|++.+.+ .+..|..|.||+|+|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            55556666666555544 444555555666666555555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=7.4e-15  Score=119.30  Aligned_cols=85  Identities=35%  Similarity=0.575  Sum_probs=50.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHH
Q 008358          145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV  224 (568)
Q Consensus       145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  224 (568)
                      ||+|++.|+.+++++|++.++++..     |.||||+|+..|+.+++++|+++ +.+++..|.+|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHHH
Confidence            5666666666666666666655422     55666666666666666666655 34455555666666666666666666


Q ss_pred             HHHHHcCCCcc
Q 008358          225 VKALLSKDPQL  235 (568)
Q Consensus       225 v~~Ll~~~~~~  235 (568)
                      +++|+++|+++
T Consensus        75 ~~~Ll~~g~~~   85 (89)
T PF12796_consen   75 VKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHTTT-T
T ss_pred             HHHHHHcCCCC
Confidence            66666665554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=1.3e-13  Score=132.10  Aligned_cols=127  Identities=33%  Similarity=0.487  Sum_probs=90.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC-----HHHHHHHHcCCC--ccccccCCC
Q 008358          170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-----VDVVKALLSKDP--QLARRTDKK  242 (568)
Q Consensus       170 ~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~~  242 (568)
                      ..+..+.++++.++..+..+++.+++..+ .+++..+..|.||||+|+..++     .++++.|++.++  +..+..|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASG-ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcC-CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            44455666777777777777766666663 3346667777777777777776     777777777777  455666777


Q ss_pred             CCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       243 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      |+||||+|+..|+.+++++|++.|++ .+..+..|.|+++.|+..++.++++.+++
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHh
Confidence            77777777777777777777777777 66667777777777777777777777776

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=5e-13  Score=128.02  Aligned_cols=133  Identities=35%  Similarity=0.395  Sum_probs=120.1

Q ss_pred             CCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCC-----HHHHHHHHHcCC--ccccC
Q 008358          200 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-----CEVVKLLLEADA--AIVML  272 (568)
Q Consensus       200 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~--~~~~~  272 (568)
                      ......+..+.+++|.++..+..++++.++..+.++ +..|..|.||||+|+..++     .+++++|++.|+  +..+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            334556677999999999999999999999999999 8999999999999999999     999999999999  66888


Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 008358          273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  338 (568)
Q Consensus       273 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~g  338 (568)
                      +|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|+++.|+..+..    .+.+.+.+.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~----~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRI----ELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchH----HHHHHHHhcC
Confidence            89999999999999999999999999 8999999999999999999987654    5556666654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.43  E-value=8e-13  Score=102.12  Aligned_cols=104  Identities=21%  Similarity=0.316  Sum_probs=80.5

Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHH
Q 008358          212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE  291 (568)
Q Consensus       212 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~  291 (568)
                      -+.+++.+|..+-|+..+..+.++...  ..|++|||+|+..|+.+++++|+..|++ ++.+|+.|-|||.-|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHH
Confidence            356677788888888777777555322  3688888888888888888888888888 7778888888888888888888


Q ss_pred             HHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          292 IVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       292 iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      +|++||+ .|++-..+.-+|.+.++.+.
T Consensus        82 cVklLL~-~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   82 CVKLLLQ-NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHH-cCcccceeCCCchhHHhhcc
Confidence            8888888 68888877778877776654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=3.4e-12  Score=127.71  Aligned_cols=95  Identities=21%  Similarity=0.320  Sum_probs=70.8

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL  213 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  213 (568)
                      ....|..|-|+||-|+..||.+||++|++.|+++ +..|.+||||||+|+..++..+++.|++.+++.....-.++.|+.
T Consensus       576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~  654 (752)
T KOG0515|consen  576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAA  654 (752)
T ss_pred             CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchh
Confidence            4455778888888888888888888888888887 678888888888888888888888888887766555555666765


Q ss_pred             HHHH--HcCCHHHHHHHH
Q 008358          214 HFAA--RQGHVDVVKALL  229 (568)
Q Consensus       214 h~A~--~~g~~~iv~~Ll  229 (568)
                      .-+-  +.|+.++.++|.
T Consensus       655 eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  655 EKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hhcchhhhhHHHHHHHHH
Confidence            5442  345555555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=4.7e-13  Score=97.93  Aligned_cols=56  Identities=43%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             HHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 008358          262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA  318 (568)
Q Consensus       262 Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A  318 (568)
                      |+++|+..++.+|..|+||||+|+.+|+.+++++|++ .|+|++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            5677744488899999999999999999999999996 8999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.36  E-value=4.2e-12  Score=98.17  Aligned_cols=96  Identities=25%  Similarity=0.316  Sum_probs=44.5

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHH
Q 008358          180 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV  259 (568)
Q Consensus       180 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  259 (568)
                      .+++++|..+-|+..+..+ .+++.. ..|++|||+|+..|+.+++++|+..|+++ +..|+.|-|||..|+..|+.++|
T Consensus         7 ~W~vkNG~~DeVk~~v~~g-~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    7 AWNVKNGEIDEVKQSVNEG-LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hhhhccCcHHHHHHHHHcc-ccHHHH-hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHHH
Confidence            4444444444444444432 112111 14455555555555555555555555544 44455555555555555555555


Q ss_pred             HHHHHcCCccccCCCCCCCh
Q 008358          260 KLLLEADAAIVMLPDKFGNT  279 (568)
Q Consensus       260 ~~Ll~~g~~~~~~~d~~G~T  279 (568)
                      ++|++.|++ -.....+|.+
T Consensus        84 klLL~~GAd-rt~~~PdG~~  102 (117)
T KOG4214|consen   84 KLLLQNGAD-RTIHAPDGTA  102 (117)
T ss_pred             HHHHHcCcc-cceeCCCchh
Confidence            555555554 3334444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=6.4e-12  Score=138.97  Aligned_cols=106  Identities=28%  Similarity=0.325  Sum_probs=78.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCH
Q 008358          177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  256 (568)
Q Consensus       177 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  256 (568)
                      ..|+.|+..|+.++++.|++. +.+++..|.+|.||||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            457777778888888877776 4566777777888888888888888888888877776 66777788888888888888


Q ss_pred             HHHHHHHHc-------CCccccCCCCCCChHHHHHH
Q 008358          257 EVVKLLLEA-------DAAIVMLPDKFGNTALHVAT  285 (568)
Q Consensus       257 ~~v~~Ll~~-------g~~~~~~~d~~G~TpLh~A~  285 (568)
                      +++++|+++       |++ .+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            888888777       555 5556666777765443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.30  E-value=1.4e-11  Score=114.78  Aligned_cols=122  Identities=26%  Similarity=0.349  Sum_probs=107.8

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCH
Q 008358           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH  154 (568)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~  154 (568)
                      ..||..++-.|+.+....||..                                  ..++|.+|..|.|+|..|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~----------------------------------vr~vn~~D~sGMs~LahAaykGnl   58 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST----------------------------------VRQVNQRDPSGMSVLAHAAYKGNL   58 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH----------------------------------hhhhhccCCCcccHHHHHHhcCcH
Confidence            3689999999999999999852                                  234678899999999999999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358          155 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       155 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  231 (568)
                      ++|++|++.|+|++...+..+.||||+|+..|+.++.+.|++. ++.....+.-|+|+-..|+.-|+-++|..+-++
T Consensus        59 ~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda-Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   59 TLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA-GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc-cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998 556777888899999999999999888776543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.30  E-value=5.5e-12  Score=91.68  Aligned_cols=54  Identities=43%  Similarity=0.575  Sum_probs=35.5

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       243 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      |.||||+|++.|+.+++++|++.|.+ ++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56777777777777777777777777 6666777777777777777777777764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=1.7e-11  Score=114.39  Aligned_cols=121  Identities=26%  Similarity=0.313  Sum_probs=97.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCC
Q 008358          176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  255 (568)
Q Consensus       176 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  255 (568)
                      ..||.-++..|..+....||.- ...++..|.+|.++|..|+..|+.+++++|++.|+|++...+..+.||||+|+..|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            4678888888888877777765 445777888888888888888888888888888888877777888888888888888


Q ss_pred             HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          256 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       256 ~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      .++.++|++.|+. ....|.-|+|+-.+|+.-|+.++|..+-+
T Consensus        92 ~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   92 QDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             chHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            8888888888887 66777888888888888888888776543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=8.7e-12  Score=124.88  Aligned_cols=102  Identities=31%  Similarity=0.386  Sum_probs=53.5

Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHH
Q 008358          216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE  295 (568)
Q Consensus       216 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~  295 (568)
                      |+..|-+|+|+..+..-.|. ...+..|-|+||-|+..|+.+||++|++.|++ +|..|.+||||||.|+.+++..+++.
T Consensus       557 aaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHHH
Confidence            44555555555555443333 33455555555555555555555555555555 55555555555555555555555555


Q ss_pred             HhcCCCCCccccc-CCCCCHHHHHhh
Q 008358          296 LLSLPDTNVNALT-RDHKTALDIAEG  320 (568)
Q Consensus       296 Ll~~~g~~~~~~d-~~G~T~L~~A~~  320 (568)
                      |++ .|+.+-+.. .++.||.+-+..
T Consensus       635 LVe-~GaavfAsTlSDmeTa~eKCee  659 (752)
T KOG0515|consen  635 LVE-SGAAVFASTLSDMETAAEKCEE  659 (752)
T ss_pred             HHh-ccceEEeeecccccchhhhcch
Confidence            555 444433322 345555555443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.26  E-value=1.2e-11  Score=89.94  Aligned_cols=54  Identities=39%  Similarity=0.581  Sum_probs=37.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL  195 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll  195 (568)
                      |+||||+|++.|+.+++++|+++|.++ +..|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888887777 445777888888888888888887775

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.26  E-value=2.3e-11  Score=134.55  Aligned_cols=103  Identities=24%  Similarity=0.292  Sum_probs=78.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHH
Q 008358          145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV  224 (568)
Q Consensus       145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  224 (568)
                      |+.|+..|+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            77788888888888888888877 56677888888888888888888888877 56677788888888888888888888


Q ss_pred             HHHHHcC-------CCccccccCCCCCCHHHHH
Q 008358          225 VKALLSK-------DPQLARRTDKKGQTALHMA  250 (568)
Q Consensus       225 v~~Ll~~-------~~~~~~~~d~~g~t~Lh~A  250 (568)
                      +++|+++       +++. +..+..|.+|+..+
T Consensus       164 v~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANA-KPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCC-CccccCCCCccchh
Confidence            8888877       4444 34455666665443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.26  E-value=4.4e-12  Score=92.77  Aligned_cols=56  Identities=43%  Similarity=0.506  Sum_probs=26.7

Q ss_pred             HHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 008358          228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  284 (568)
Q Consensus       228 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A  284 (568)
                      ||++++...+..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            45556444467777777777777777777777777777777 777777778887776

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.72  E-value=7.8e-09  Score=109.12  Aligned_cols=96  Identities=24%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             HHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcccc
Q 008358          192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM  271 (568)
Q Consensus       192 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~  271 (568)
                      -++-..+....++.|..|+|+||+|+..+..+++++||++|.++.-.-...|+||||-|+..|+.+++-+||++|.. ..
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~  113 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LR  113 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eE
Confidence            34444555667788888888888888888888888888888887443344688888888888888888888888887 67


Q ss_pred             CCCCCCChHHHHHHHcC
Q 008358          272 LPDKFGNTALHVATRKK  288 (568)
Q Consensus       272 ~~d~~G~TpLh~A~~~g  288 (568)
                      .+|++|..||..-++-.
T Consensus       114 i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             EecccCCCHHHHHhhcc
Confidence            78888888888776643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.61  E-value=1.9e-07  Score=94.80  Aligned_cols=97  Identities=32%  Similarity=0.389  Sum_probs=70.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  212 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  212 (568)
                      +-.++.+..|.||+|+..|+-++|+++|++||. +....|..|.|+||.|+..++..+.++|++. ++.+...|..|.||
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda-gasl~ktd~kg~tp  970 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA-GASLRKTDSKGKTP  970 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc-chhheecccCCCCh
Confidence            445566667778888888888888888887764 3345567777888888877777777777777 44556667778888


Q ss_pred             HHHHHHcCCHHHHHHHHcC
Q 008358          213 LHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       213 Lh~A~~~g~~~iv~~Ll~~  231 (568)
                      -..|-..|..+++.+|-.+
T Consensus       971 ~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  971 QERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcCCchHHHHHhhh
Confidence            8777777777777777554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.61  E-value=1.6e-07  Score=94.19  Aligned_cols=84  Identities=25%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             HHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchh
Q 008358          247 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEE  326 (568)
Q Consensus       247 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~  326 (568)
                      ||..++.|+.+..--|+..|++....--..|+||||+|++.|+..-+++|+- +|+|+++.|.+|+||+++|...++.+.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            5555555555555555555555222222345555555555555555555554 555555555555555555555555443


Q ss_pred             hHHHH
Q 008358          327 ASEIK  331 (568)
Q Consensus       327 ~~~i~  331 (568)
                      ...++
T Consensus       216 aeRl~  220 (669)
T KOG0818|consen  216 AERLV  220 (669)
T ss_pred             HHHHH
Confidence            33333

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.61  E-value=2.8e-08  Score=105.08  Aligned_cols=85  Identities=31%  Similarity=0.363  Sum_probs=77.8

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358          133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  212 (568)
Q Consensus       133 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  212 (568)
                      ..|.+|..|+|+||+|+..|..+++++||++|.++.......|+||||.|+..|+.|++..||.+ +..+...|++|.+|
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-GRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc-CCceEEecccCCCH
Confidence            37888999999999999999999999999999999666667799999999999999999999998 56788999999999


Q ss_pred             HHHHHH
Q 008358          213 LHFAAR  218 (568)
Q Consensus       213 Lh~A~~  218 (568)
                      |..-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            998876

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.58  E-value=1.9e-07  Score=94.82  Aligned_cols=118  Identities=28%  Similarity=0.373  Sum_probs=94.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCc-cccccCCCCCCHHHHHHhCCCHH
Q 008358          179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ-LARRTDKKGQTALHMAVKGQSCE  257 (568)
Q Consensus       179 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~~  257 (568)
                      +..|+..++.--++.....++ .+-.++.+-.+.||+|+..|+-++|+++|+++|. +.+..|..|+|+||-|+..++-.
T Consensus       870 il~av~~~D~~klqE~h~~gg-~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGG-SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCC-ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            566666666555555655644 4556777888889999999999999999988874 44667888999999999888888


Q ss_pred             HHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       258 ~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      +.++|++.|+. ....|..|.||-.-|-..|..++..+|-.
T Consensus       949 vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            99999999988 66788899999999999999998888765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.57  E-value=5.1e-08  Score=97.18  Aligned_cols=93  Identities=22%  Similarity=0.200  Sum_probs=83.2

Q ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       240 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      +.++..++.+|++.|+...++-+.-.|.| ++.+|.+.+|+||+|+..|+.+++++|++..+++++.+|+.|+||||-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            44667889999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhhHHHHHHHHHc
Q 008358          320 GLPSSEEASEIKDCLARC  337 (568)
Q Consensus       320 ~~~~~~~~~~i~~~L~~~  337 (568)
                      +.++.    +++++|.++
T Consensus       582 ~F~h~----~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHK----EVVKLLEEA  595 (622)
T ss_pred             hcCcH----HHHHHHHHH
Confidence            88775    455555544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.53  E-value=2.5e-07  Score=92.74  Aligned_cols=94  Identities=27%  Similarity=0.279  Sum_probs=83.2

Q ss_pred             ccCcCCChH------HHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCC
Q 008358          204 ISRSNGKNA------LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  277 (568)
Q Consensus       204 ~~d~~g~tp------Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G  277 (568)
                      .+|.+|.+.      ||..++.|+.++.-.||..|++.+..--..|.||||+|++.|+..-+++|+-+|+| ++..|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCC
Confidence            345555544      89999999999999999999998666677899999999999999999999999999 89999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHhc
Q 008358          278 NTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       278 ~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      .||+.+|-..|+-++.+.|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999988888776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.52  E-value=1e-07  Score=59.45  Aligned_cols=29  Identities=45%  Similarity=0.572  Sum_probs=19.3

Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcc
Q 008358          276 FGNTALHVATRKKRTEIVTELLSLPDTNVN  305 (568)
Q Consensus       276 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~  305 (568)
                      +|+||||+|++.|+.+++++|++ .|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCC
Confidence            36666666666666666666666 566665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.49  E-value=1.4e-07  Score=60.52  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=25.0

Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 008358          276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  309 (568)
Q Consensus       276 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~  309 (568)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            47778888887778888887777 7777777663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.48  E-value=1.8e-07  Score=58.33  Aligned_cols=28  Identities=43%  Similarity=0.739  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSL  167 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~  167 (568)
                      +|+||||+|++.|+.++|++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4889999999999999999999998887

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.43  E-value=6.2e-05  Score=81.38  Aligned_cols=59  Identities=24%  Similarity=0.259  Sum_probs=50.7

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 008358          132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD  198 (568)
Q Consensus       132 ~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~  198 (568)
                      -++|..|.-|+++|++|+.+.+.+++++|++++-..        ..+|.+|+..|..++|+.++.+.
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~  111 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHF  111 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcc
Confidence            457888999999999999999999999999876443        36899999999999999999873

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.38  E-value=3.5e-07  Score=91.40  Aligned_cols=92  Identities=35%  Similarity=0.376  Sum_probs=62.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHh
Q 008358          173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  252 (568)
Q Consensus       173 ~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  252 (568)
                      .++..++++|+..|+...++.+.-. +.+.+.+|.+.+|+||.|+..|+.+++++|++.+....+.+|..|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            4455667777777777776666655 556666777777777777777777777777776555556667777777777777


Q ss_pred             CCCHHHHHHHHHc
Q 008358          253 GQSCEVVKLLLEA  265 (568)
Q Consensus       253 ~~~~~~v~~Ll~~  265 (568)
                      .++.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            7777777776654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.37  E-value=8e-07  Score=90.46  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=85.5

Q ss_pred             HhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHH
Q 008358           77 ELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI  156 (568)
Q Consensus        77 ~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~i  156 (568)
                      |||.++...+.+-....+..                                .....++.+|..|+||||+|+..|+.+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~--------------------------------~~~~~id~~D~~g~TpLhlAV~Lg~~~~   70 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLA--------------------------------KVSLVIDRRDPPGRTPLHLAVRLGHVEA   70 (560)
T ss_pred             ccchhhhccchhhHHHHHhh--------------------------------hhhceeccccCCCCccHHHHHHhcCHHH
Confidence            57777777777666665531                                1234577889999999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCC
Q 008358          157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP  233 (568)
Q Consensus       157 v~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  233 (568)
                      ++.|+..|+++ ...|..|++|||.|+..|+.+++..+|.+.......           -...+...+++.|.+.+.
T Consensus        71 a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~~~q~~~-----------~~~~~~p~ll~~l~~~~D  135 (560)
T KOG0522|consen   71 ARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRHLKYQAWE-----------KWERRLPRLLAKLSEMPD  135 (560)
T ss_pred             HHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHHhHHHHHH-----------HHHhcchHHHHHHHhCcc
Confidence            99999999998 789999999999999999999999999873321111           113345566666666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.29  E-value=1e-06  Score=56.48  Aligned_cols=32  Identities=38%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHHcCCccccCCC
Q 008358          242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD  274 (568)
Q Consensus       242 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d  274 (568)
                      +|+||||+|+..|+.+++++|+++|++ ++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD-INARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence            366666666666666666666666666 44444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.24  E-value=2.5e-06  Score=86.93  Aligned_cols=111  Identities=21%  Similarity=0.305  Sum_probs=82.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHH-cCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCC
Q 008358          177 TPLVSAATRGHTAVVNELLS-KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  255 (568)
Q Consensus       177 tpL~~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  255 (568)
                      -|+|+++.....+-...++. .....++..|..|.||||+|+..|+.+.++.|+..++++ ..+|.+|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            45999988877665555433 334567788889999999999999999999999999987 7789999999999999999


Q ss_pred             HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358          256 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  299 (568)
Q Consensus       256 ~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  299 (568)
                      .+++..++.+...-..           .-...+.+.+++.|.+.
T Consensus       101 ~q~i~~vlr~~~~q~~-----------~~~~~~~p~ll~~l~~~  133 (560)
T KOG0522|consen  101 EQIITEVLRHLKYQAW-----------EKWERRLPRLLAKLSEM  133 (560)
T ss_pred             HHHHHHHHHHhHHHHH-----------HHHHhcchHHHHHHHhC
Confidence            9888888775332100           01234556677777663

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.16  E-value=7.6e-06  Score=83.89  Aligned_cols=88  Identities=22%  Similarity=0.243  Sum_probs=61.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCC---cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358          145 LHIAAVQGHHAIVQVLLDHDPSL---SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  221 (568)
Q Consensus       145 Lh~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  221 (568)
                      |.-|+...++..+-+||.+|...   ....+.+|+|+||+||+.|+..+.++|+ ..+.++..+|.+|+|+|.+|-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhccc
Confidence            45566666777777777776432   1233455677777777777777777777 4466677777777777777777777


Q ss_pred             HHHHHHHHcCCC
Q 008358          222 VDVVKALLSKDP  233 (568)
Q Consensus       222 ~~iv~~Ll~~~~  233 (568)
                      .+++..|+++|.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            777777777764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.12  E-value=6.4e-06  Score=84.41  Aligned_cols=91  Identities=29%  Similarity=0.233  Sum_probs=64.3

Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCc---cccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 008358          246 ALHMAVKGQSCEVVKLLLEADAA---IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  322 (568)
Q Consensus       246 ~Lh~A~~~~~~~~v~~Ll~~g~~---~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~  322 (568)
                      -|.-|+...+...+-+||.+|..   .....+.+|+|+||+|++.|+..+.++|+- +|+|+.++|.+|+|+|.||.+.+
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc
Confidence            45556666666677777776643   123345667888888888888888887776 78888888888888888887755


Q ss_pred             CchhhHHHHHHHHHcCccc
Q 008358          323 SSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       323 ~~~~~~~i~~~L~~~ga~~  341 (568)
                      .    ++.++.|+++|...
T Consensus       706 s----qec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 S----QECIDVLLQYGCPD  720 (749)
T ss_pred             c----HHHHHHHHHcCCCc
Confidence            3    46777788887654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.06  E-value=1.1e-05  Score=88.84  Aligned_cols=128  Identities=17%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  212 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  212 (568)
                      .......|+|.||+++..+..-+++.+++. |... ...|.+|.-.+|+ |..++.+...+|+...+..++++|.+|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            333444555555555555555555555553 2221 3334444444444 344444444444444444555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccc-----cCCCCCCHHHHHHhCCCHHHHHHHH
Q 008358          213 LHFAARQGHVDVVKALLSKDPQLARR-----TDKKGQTALHMAVKGQSCEVVKLLL  263 (568)
Q Consensus       213 Lh~A~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~~~~~~v~~Ll  263 (568)
                      ||+|+..|+..++..|++.+++....     .+-.|.|+-.+|-.+|+..+.-+|-
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            55555555555555555444332111     1123444444444444444444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.05  E-value=5.9e-05  Score=81.58  Aligned_cols=121  Identities=21%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC--C-cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPS--L-SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~-~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      +.--.-.|+.+|+.-.|+..++....  + .+..|.-|+++|+.|+.+.|.+++++|+++....        ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            34456778888888888888876433  1 1456777888888888888888888888773211        45778888


Q ss_pred             HcCCHHHHHHHHcCCCcccc---------ccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc
Q 008358          218 RQGHVDVVKALLSKDPQLAR---------RTDKKGQTALHMAVKGQSCEVVKLLLEADAAI  269 (568)
Q Consensus       218 ~~g~~~iv~~Ll~~~~~~~~---------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  269 (568)
                      ..|.+++|+.++.+......         ..-..+-|||.+||..++.|++++|+++|+.+
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            88888888888876433210         11123456666666666666666666666664

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.93  E-value=6.6e-06  Score=91.18  Aligned_cols=82  Identities=37%  Similarity=0.357  Sum_probs=76.4

Q ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       240 d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      -..|.|+||.|+..+..-++++|++.|++ +|..|..|+||||.+...|+...+..|++ +|++.++.|.+|++|+++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHh
Confidence            35688999999999999999999999999 99999999999999999999999999999 89999999999999999998


Q ss_pred             hCCC
Q 008358          320 GLPS  323 (568)
Q Consensus       320 ~~~~  323 (568)
                      ...+
T Consensus       731 ~~~~  734 (785)
T KOG0521|consen  731 EAAN  734 (785)
T ss_pred             hhcc
Confidence            7643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.82  E-value=1.5e-05  Score=88.40  Aligned_cols=86  Identities=29%  Similarity=0.346  Sum_probs=61.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358          208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  287 (568)
Q Consensus       208 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~  287 (568)
                      .|.|+||.|+..|..-+.++|+++++++ +..|..|+||||.+...|+...+..|++.|++ .+..|.+|.+||++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHhhh
Confidence            4677777777777777777777777774 67777777777777777777777777777777 677777777777777666


Q ss_pred             CcHHHHHH
Q 008358          288 KRTEIVTE  295 (568)
Q Consensus       288 g~~~iv~~  295 (568)
                      .+.+++-+
T Consensus       733 ~~~d~~~l  740 (785)
T KOG0521|consen  733 ANADIVLL  740 (785)
T ss_pred             ccccHHHH
Confidence            55554433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.80  E-value=5.4e-05  Score=74.04  Aligned_cols=124  Identities=24%  Similarity=0.332  Sum_probs=79.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358          142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  221 (568)
Q Consensus       142 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  221 (568)
                      .--|+.||+.|+.+.|+.|++.|.++ +..|....+||.+|+..||.++|++||+++ +......-+|.-. |+++.+.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcchh-hhhhhhHH
Confidence            34689999999999999999999998 788999999999999999999999999984 4333333345544 44443322


Q ss_pred             -------HHHHHHHHcCCCccccccCCCCCCHHHH------HHhCC-CHHHHHHHHHcCCc
Q 008358          222 -------VDVVKALLSKDPQLARRTDKKGQTALHM------AVKGQ-SCEVVKLLLEADAA  268 (568)
Q Consensus       222 -------~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~------A~~~~-~~~~v~~Ll~~g~~  268 (568)
                             +++.+.+=.+.|........-..|.||.      +.+.| +.++-++|++.+..
T Consensus       114 IR~mllsydi~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs  174 (516)
T KOG0511|consen  114 IRRMLLSYDILKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSS  174 (516)
T ss_pred             HHHHHHHHHHHHHhhccCCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhc
Confidence                   2333333333333322222233444432      33333 34566777776554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.78  E-value=6.6e-05  Score=66.82  Aligned_cols=69  Identities=23%  Similarity=0.327  Sum_probs=61.3

Q ss_pred             cccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 008358          131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG  199 (568)
Q Consensus       131 ~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  199 (568)
                      ..++|.+|..|+|||+.|+..|+.+.|.+|+.+|.......|..|.+.+.+|-+.|+.+++..|.+...
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            346889999999999999999999999999999955558899999999999999999999999988744

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.78  E-value=2.6e-05  Score=85.98  Aligned_cols=89  Identities=22%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 008358          208 NGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  286 (568)
Q Consensus       208 ~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~  286 (568)
                      .|.+-+|+++..++.-+++.+++. +... ...|.+|...+|+++ .++.+..-+|+......++.+|.+|+||||+|+.
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            445555555555555555555554 2111 334445555555522 2333333333333222245555555555555555


Q ss_pred             cCcHHHHHHHhc
Q 008358          287 KKRTEIVTELLS  298 (568)
Q Consensus       287 ~g~~~iv~~Ll~  298 (568)
                      +|+..++..|++
T Consensus       651 ~G~e~l~a~l~~  662 (975)
T KOG0520|consen  651 RGREKLVASLIE  662 (975)
T ss_pred             cCHHHHHHHHHH
Confidence            555555555553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.64  E-value=0.00015  Score=71.14  Aligned_cols=83  Identities=31%  Similarity=0.320  Sum_probs=62.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCC-CCChHHHHHHHcC
Q 008358          210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKK  288 (568)
Q Consensus       210 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~~g  288 (568)
                      .--|..||+.|..+.|+.|++.|.++ |.+|....+||.+|+..|+.++|++|+++|+-.  .+|. +|.- -|+++.+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC--~rdtf~G~R-C~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC--SRDTFDGDR-CHYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc--cccccCcch-hhhhhhhH
Confidence            44688999999999999999988887 888999999999999999999999999999852  2333 3443 35555443


Q ss_pred             cHHHHHHHhc
Q 008358          289 RTEIVTELLS  298 (568)
Q Consensus       289 ~~~iv~~Ll~  298 (568)
                        .|-+.||.
T Consensus       113 --~IR~mlls  120 (516)
T KOG0511|consen  113 --RIRRMLLS  120 (516)
T ss_pred             --HHHHHHHH
Confidence              33344554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.55  E-value=0.00019  Score=63.97  Aligned_cols=64  Identities=28%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             ccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHc
Q 008358          202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  265 (568)
Q Consensus       202 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  265 (568)
                      ++.+|..|+||+++|+..|..+.+.+|+.+|.......|..|.+++.+|-++|..++++.|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3444444555555555555555555555554332344444555555555555555555544443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.50  E-value=0.0079  Score=61.45  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=54.7

Q ss_pred             CCCHHHHHHHHHcCCcc-----ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          253 GQSCEVVKLLLEADAAI-----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       253 ~~~~~~v~~Ll~~g~~~-----~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      ..-...+++|.+++.+.     ....|..-.|+||+|+..|.-++|.+||+ .|+|+..+|..|+||..++.
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            34467788888887763     22345556799999999999999999999 68999999999999999886

>smart00248 ANK ankyrin repeats

Probab=96.31  E-value=0.007  Score=36.06  Aligned_cols=27  Identities=41%  Similarity=0.742  Sum_probs=21.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSL  167 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~  167 (568)
                      |.||||+|+..|+.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.95  E-value=0.011  Score=35.16  Aligned_cols=22  Identities=41%  Similarity=0.599  Sum_probs=11.8

Q ss_pred             CChHHHHHHHcCcHHHHHHHhc
Q 008358          277 GNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       277 G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      |.||+|+|+..++.++++.|++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~   23 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLD   23 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            4455555555555555555554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.84  E-value=0.072  Score=54.73  Aligned_cols=63  Identities=24%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             HHHHHHHHcCCCccc-----cccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358          222 VDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  285 (568)
Q Consensus       222 ~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~  285 (568)
                      .+.+++|.+++.+.+     ...+..-.|+||+|+..|..++|.+||+.|.| ....|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            566777777765542     22344467999999999999999999999988 8899999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.45  E-value=0.74  Score=42.80  Aligned_cols=50  Identities=22%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             cHHHHHHHhcCCCCCccc---ccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358          289 RTEIVTELLSLPDTNVNA---LTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  342 (568)
Q Consensus       289 ~~~iv~~Ll~~~g~~~~~---~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  342 (568)
                      +..+++++++..-+++|.   +-+.|.|.||-|.+.++.    +++..|+++||.+.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~----emi~~Llk~GA~~~  281 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNS----EMIAFLLKYGAISG  281 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcH----HHHHHHHHcCcccc
Confidence            456677777754466665   346788888888877654    67778888887653

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.81  E-value=2  Score=38.89  Aligned_cols=137  Identities=14%  Similarity=0.029  Sum_probs=84.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHH
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  223 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  223 (568)
                      .|..|+..+...|++..-+...+-    -...++.+..||+..+.|+|+++-+.-.    .  .+-.+-.-.|....+.+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~----i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLH----I--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccC----C--CCchhhhhhhhhccchh
Confidence            456778888888887776643221    1345677888888888888888744311    1  22345566677776665


Q ss_pred             HHH----HHHcCCCccccccC--CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          224 VVK----ALLSKDPQLARRTD--KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       224 iv~----~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      +..    .++++.... ...|  .--..-|..|+..|-...+...+++|.+. +      +++|-.|+++++.+++.+++
T Consensus       119 LyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHHHHhh
Confidence            521    222221110 0000  00012467788889888888888888872 1      28899999999988888876


Q ss_pred             c
Q 008358          298 S  298 (568)
Q Consensus       298 ~  298 (568)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.82  E-value=1.4  Score=40.99  Aligned_cols=48  Identities=23%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHcCCccccC---CCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 008358          254 QSCEVVKLLLEADAAIVML---PDKFGNTALHVATRKKRTEIVTELLSLPDT  302 (568)
Q Consensus       254 ~~~~~v~~Ll~~g~~~~~~---~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  302 (568)
                      .+..++++.+++|.-.+|.   +-+.|.|-|.-|+++++.+++..||+ +|+
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA  278 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGA  278 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH-cCc
Confidence            3456777777776533332   34567788888888888888888877 565

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=89.39  E-value=3.2  Score=37.60  Aligned_cols=44  Identities=23%  Similarity=0.229  Sum_probs=26.7

Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 008358          213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  263 (568)
Q Consensus       213 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  263 (568)
                      |..|+..|..+.+...++.|.+...       ++|..|++.++-.++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhh
Confidence            4556666666666666666655411       5666666666666666554

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.94  E-value=1.9  Score=33.27  Aligned_cols=48  Identities=25%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 008358          245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  300 (568)
Q Consensus       245 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  300 (568)
                      ..+..|+.+|+.|+++.+++.+..     +   ...+..|+...+-+++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            456777777777777777764421     1   34677777777777777777743

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.45  E-value=2.3  Score=32.76  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=22.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358          178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       178 pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  231 (568)
                      .+..|+.+|+.|+++.+++....+        ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            445555555555555555432110        2345555555555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=81.03  E-value=19  Score=36.19  Aligned_cols=220  Identities=8%  Similarity=0.041  Sum_probs=102.9

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccc----cccCCCCchHHHHHhhhhHHHHHHhhhcCccc-ccccCCCCC
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQM----VGNLSGAEFDTEVAEIRSSVVNELLKYSTKEG-LTRKNRSGF  142 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~----~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~-~~~~~~~g~  142 (568)
                      -..|..|.-.|..+...++.+....+++...+..    .+..+..-+......+..+....++....+.- --..+..|.
T Consensus        15 l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~   94 (322)
T cd07920          15 FAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGC   94 (322)
T ss_pred             ccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhH
Confidence            3456677777777777777777777775321111    11111111222222222221111111111100 012355565


Q ss_pred             cHHHHHHHcCCHHHHHHHHhc--CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CccccCcCCChHHHHHHH
Q 008358          143 DPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG--LLEISRSNGKNALHFAAR  218 (568)
Q Consensus       143 TpLh~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~  218 (568)
                      -.+..+...+..+....+++.  +.-.....|..|...+..+...+..+..+.+++.-..  ..-..+..|...+.....
T Consensus        95 ~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~  174 (322)
T cd07920          95 RVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLE  174 (322)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHH
Confidence            556555555554333333332  1111123566677777776666655554444432110  001224556666666655


Q ss_pred             cCCHH----HHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCC-c-cccCCCCCCChHHHHHHHcCc
Q 008358          219 QGHVD----VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA-A-IVMLPDKFGNTALHVATRKKR  289 (568)
Q Consensus       219 ~g~~~----iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~-~~~~~d~~G~TpLh~A~~~g~  289 (568)
                      ....+    +++.|+..-..  -..|..|+..+..+...+..+..+.+++.-. + ..-..+..|...+..+...+.
T Consensus       175 ~~~~~~~~~l~~~l~~~~~~--L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~  249 (322)
T cd07920         175 HCSEEQREPLLEEILEHALE--LVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHAS  249 (322)
T ss_pred             hCCHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCC
Confidence            54433    33333332222  2346778888877777776554443333211 1 112456777777777776664

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	568
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		8e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		9e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
1uoh_A	226	Human Gankyrin Length = 226		1e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-08
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-07
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-07
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		8e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		5e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		6e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		8e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		9e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		3e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		6e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		7e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		8e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL  AA  GH  VV +LL + G  +     NG+  LH AAR GH++VVK LL     + 
Sbjct: 4   TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
            + DK G+T LH+A +    EVVKLLLEA  A V   DK G T LH+A R    E+V  L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 297 LS 298
           L 
Sbjct: 121 LE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
           G+T LH+A +    EVVKLLLEA  A V   DK G T LH+A R    E+V  LL     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 303 NVNALTRDHKTALDIA 318
           +VNA  ++ +T L +A
Sbjct: 60  DVNAKDKNGRTPLHLA 75

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 10/247 (4%)
Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG-AEFDTEVAEIRSSVVNELL-KYSTK 131
           + T LH AA+ G    VK +L    +  +   +G         E     V  LL K +++
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 191
             +T+K   GF PLH+AA  G   + ++LL+ D +     G +  TPL  A    +  +V
Sbjct: 140 ACMTKK---GFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
             LL + GG       NG   LH AA+Q  V+V ++LL      A     +G T LH+A 
Sbjct: 196 KLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAA 253
Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 311
           +    E+V LLL   A    L +K G T LH+  ++     V ++L      V+A TR  
Sbjct: 254 QEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVP-VADVLIKHGVMVDATTRMG 311
Query: 312 KTALDIA 318
            T L +A
Sbjct: 312 YTPLHVA 318

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNE 193
           +G+ PLHIAA Q    + + LL       Q  G +NA      TPL  AA  GH  +V  
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLL-------QYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
           LLSK      +   +G   LH  A++GHV V   L+ K   +   T + G T LH+A   
Sbjct: 264 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHY 321
Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
            + ++VK LL+  A  V    K G + LH A ++  T+IVT LL     + N ++ D  T
Sbjct: 322 GNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTT 379
Query: 314 ALDIAEGL 321
            L IA+ L
Sbjct: 380 PLAIAKRL 387

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
           G  PLH AA  GH  IV++LL    DP+   + G    TPL  AA  GH  +V  LLSK 
Sbjct: 37  GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG---RTPLHYAAENGHKEIVKLLLSK- 92
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSC 256
           G       S+G+  LH+AA  GH ++VK LLSK  DP     +D  G+T L +A +  + 
Sbjct: 93  GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT---SDSDGRTPLDLAREHGNE 149
Query: 257 EVVKLL 262
           E+VKLL
Sbjct: 150 EIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 236
           L+ AA  G+   V +LL ++G     S S+G+  LH+AA  GH ++VK LLSK  DP   
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA- 65
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
              D  G+T LH A +    E+VKLLL +  A     D  G T LH A      EIV  L
Sbjct: 66  --KDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 297 LSLPDTNVNALTRDHKTALDIA 318
           LS    + N    D +T LD+A
Sbjct: 123 LS-KGADPNTSDSDGRTPLDLA 143

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G+   V +L+ ++G  +  S S+G+  LH+AA++GH ++VK L+SK   +  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G+T LH A K    E+VKLL+ +  A V   D  G T LH A ++   EIV  L+S
Sbjct: 67  -DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VN    D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           +  G  PLH+AA  GH  +V++LL    DP+   + G    TPL  AA  GH  VV  LL
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLL 90
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKG 253
           S+ G       S+GK  LH AA  GH +VVK LLS+  DP     +D  G+T L +A + 
Sbjct: 91  SQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---TSDSDGRTPLDLAREH 146
Query: 254 QSCEVVKLL 262
            + EVVKLL
Sbjct: 147 GNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 236
           L+ AA  G+   V +LL ++G  +  S S+GK  LH AA  GH +VVK LLS+  DP  A
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-A 65
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
           + +D  G+T LH+A +    EVVKLLL +  A     D  G T LH+A      E+V  L
Sbjct: 66  KDSD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 297 LSLPDTNVNALTRDHKTALDIA 318
           LS    + N    D +T LD+A
Sbjct: 123 LSQ-GADPNTSDSDGRTPLDLA 143

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
           NG+  LH AAR GH++VVK LL     +  + DK G+T LH+A +    EVVKLLLEA  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELL 297
           A V   DK G T LH+A R    E+V  LL
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
           G      L+ AA  G    V  L++ +G  +     +G   LH AAR+GH+++V+ LL  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
              +  + DK G T LH+A +    E+V++LL+A  A V   DK G T LH+A R+   E
Sbjct: 70  GADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLE 127
Query: 292 IVTELLSLPDTNVNALTRDHKTALDIA 318
           IV E+L     +VNA  +  KTA DI+
Sbjct: 128 IV-EVLLKAGADVNAQDKFGKTAFDIS 153

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G+   V +L+ ++G  +  S S+G+  LH AA  GH +VVK L+SK   +  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G+T LH A +    EVVKLL+ +  A V   D  G T LH A      E+V  L+S
Sbjct: 67  -DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VN    D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL  AA  GH  +V E+L K G  +     +G   LH AAR+GH+++V+ LL     + 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
            + DK G T LH+A +    E+V++LL+A  A V   DKFG T   +A R+   +I
Sbjct: 96  AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDI 149

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           K++ G+ PLH+AA +GH  IV+VLL     ++        TPL  AA  GH  +V E+L 
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 88
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           K G  +     +G   LH AAR+GH+++V+ LL     +    DK G+T   +A+   + 
Sbjct: 89  KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNE 147
Query: 257 EVVKLLLEA 265
           ++ ++L +A
Sbjct: 148 DIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  L++ +G  +     +G   LH AAR+GH+++V+ LL     +  +
Sbjct: 6   LLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            DK G T LH+A +    E+V++LL+A  A V   DK G T LH+A R+   EIV E+L 
Sbjct: 65  -DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIV-EVLL 121
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KT  D+A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
           ++ +G+ PLH+AA  GH  IV+VLL +  D +   + G    TPL  AA RGH  +V E+
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG---VTPLHLAARRGHLEIV-EV 98
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
           L K+G  +  S S+G   LH AA++GH+++V+ LL K+       DK G+TA  +++   
Sbjct: 99  LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
Query: 255 SCEVVKLL 262
           + ++ ++L
Sbjct: 158 NEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL  AA  GH  +V E+L K+G  +    S G   LH AAR+GH+++V+ LL K+    
Sbjct: 49  TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADV 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
             +D  G T LH+A K    E+V++LL+ + A V   DKFG TA  ++
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
           G   LH AA  GH+++V+ LL     +  + D  G T LH+A +    E+V++LL+ + A
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLK-NGA 104
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            V   D  G T LH+A ++   EIV  LL     +VNA  +  KTA DI+
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH AA  GH  I  +L+    ++  T      TPL+ AA   H   V  L+ K G L++
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVD 71
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
              + G   LH AA++GH +VV+ LLS         D  G T +  A + +  ++VKLLL
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 264 E------------------------ADAAIVMLPDK--------FGNTALHVATRKKRTE 291
                                     D A ++L  K         G++ LH+A R+ R +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 292 IVTELLSLPDTNVNALTRDHKTALDIA 318
            V   LS  D++V    ++ +T L  A
Sbjct: 192 CVVLFLS-RDSDVTLKNKEGETPLQCA 217

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           ++ SG  PLH+AA++GH  IV+VLL H   ++      + TPL  AA  GH  +V E+L 
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           K+G  +  + + G   LH AA  GH+++V+ LL     +    DK G+TA  +++   + 
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 257 EVVKLL 262
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +     +GK  LH AA +GH+++V+ LL     +   
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            DK G T LH+A      E+V++LL+ + A V   D +G T LH+A      EIV  LL 
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           +  G+ PLH+AA  GH  IV+VLL +  D + S  TG    TPL  AA  GH  +V E+L
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG---ITPLHLAAATGHLEIV-EVL 99
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
            K G  +    ++G   LH AA+ GH+++V+ LL     +  + DK G+TA  +++   +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 256 CEVVKLL 262
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +  + ++G   LH AA  GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           +D  G T LH+A      E+V++LL+   A V   D  G+T LH+A +    EIV E+L 
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKH-GADVNAYDNDGHTPLHLAAKYGHLEIV-EVLL 133
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
           G+ PLH+AA  GH  IV+VLL +  D +   T G   +TPL  AA  GH  +V E+L K+
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG---STPLHLAAHFGHLEIV-EVLLKN 102
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 258
           G  +     NG   LH AA +GH+++V+ LL     +    DK G+TA  +++   + ++
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDL 161
Query: 259 VKLL 262
            ++L
Sbjct: 162 AEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
           G   LH AA  GH+++V+ LL K+       D  G T LH+A      E+V++LL+ + A
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGA 104
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            V   D  G T LH+A  +   EIV  LL     +VNA  +  KTA DI+
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
           G+   ++ G  PLH+AA+ G   ++ +LL H        G  NA   V            
Sbjct: 78  GVNVTSQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVP----------- 122
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
                               LH A +QGH  VVK LL  + +   + D  G T L  A  
Sbjct: 123 --------------------LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACS 161
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
           G   E+V LLL+  A+I    +K GNTALH A  +K    V ELL L   +V  L +  +
Sbjct: 162 GGHHELVALLLQHGASINASNNK-GNTALHEAVIEKHV-FVVELLLLHGASVQVLNKRQR 219
Query: 313 TALDIAE 319
           TA+D AE
Sbjct: 220 TAVDCAE 226

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
           G+ PLH+AA  GH  IV+VLL +  D +   + G    TPL  AA RGH  VV E+L K+
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG---VTPLHLAADRGHLEVV-EVLLKN 102
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 258
           G  +  +  NG   LH AA  GH+++V+ LL     +    DK G+TA  +++   + ++
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Query: 259 VKLL 262
            ++L
Sbjct: 162 AEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +  S   G   LH AA  GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G T LH+A      EVV++LL+ + A V   D  G T LH+A      EIV  LL 
Sbjct: 76  DDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 135 -HGADVNAQDKFGKTAFDIS 153

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 204
           LH AA+     +V+  +     + Q  G  N+TPL  A  +GH ++V +L+ K G    +
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLL 263
               G + +H AA+ GH  +V  L++K  Q     D+ G T L  A  +  S +  +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 264 EADAAIVMLPDKF-GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319
             + + V L DK+  NTALH A     T +++ LL     NV+A     ++ALD+A+
Sbjct: 164 TFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAK 218

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           + +G  PLH+AA  GH  IV+VLL H  D   S   G    TPL  AA  GH  +V E+L
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG---YTPLHLAAYWGHLEIV-EVL 99
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
            K+G  +    S+G   LH AA+ G++++V+ LL     +  + DK G+TA  +++   +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 256 CEVVKLL 262
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +  + + G   LH AA  GH+++V+ LL     +   
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           +D  G T LH+A      E+V++LL+ + A V   D  G T LH+A +    EIV E+L 
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIV-EVLL 133
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           ++ SG+ PLH+AA  GH  IV+VLL +   ++     +  TPL  AA  GH  +V E+L 
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           K+G  +  +   G   LH AA  GH+++V+ LL K+       DK G+TA  +++   + 
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 257 EVVKLL 262
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +    ++G   LH AA  GH+++V+ LL K+      
Sbjct: 18  LLEAARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G T L +A      E+V++LL+ + A V   D  G+T LH+A      EIV  LL 
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 135 -NGADVNAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
           + +G  PLH+AAV GH  IV+VLL H   +         TPL  AA  GH  +V E+L K
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
            G  +      G   LH AA +GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 258 VVK 260
           + K
Sbjct: 161 LAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  L++ +G  +    + G   LH AA  GH+++V+ LL     +   
Sbjct: 18  LLEAARAGQDDEVRILIA-NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G T LH+A      E+V++LL+  A +    D  G+T LH+A  +   EIV  LL 
Sbjct: 76  ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
           +G   LH AA+ GH + VK LLSK   +  R+ K G T LH+A K    E+VKLLL A  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
           A V    K GNT  H+A +    EIV +LL     +VNA
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNA 103

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
           + SG  PLH+AA  GH  IV+VLL H   ++       +TPL  AA  GH  +V E+L K
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IXGSTPLHLAALIGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
            G  +    + G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 258 VVKLL 262
           + ++L
Sbjct: 161 LAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
             T  S  TPL  AAT GH  +V E+L K G  +      G   LH AA  GH+++V+ L
Sbjct: 41  NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
           L     +    D  G T LH+A      E+V++LL+   A V   DKFG TA  ++    
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 289 RTEI 292
             ++
Sbjct: 158 NEDL 161

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
           + SG  PLH+AA  GH  IV+VLL H   ++       +TPL  AA  GH  +V E+L K
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
            G  +    + G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 258 VVKLL 262
           + ++L
Sbjct: 161 LAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
             T  S  TPL  AAT GH  +V E+L K G  +      G   LH AA  GH+++V+ L
Sbjct: 41  NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
           L     +    D  G T LH+A      E+V++LL+   A V   DKFG TA  ++    
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 289 RTEI 292
             ++
Sbjct: 158 NEDL 161

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
           G  PLH+    GH  I++VLL +   ++ +   S  TPL  AA RGH  +V E+L K G 
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASD-KSGWTPLHLAAYRGHLEIV-EVLLKYGA 104
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
            +      G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + ++ +
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Query: 261 LL 262
           +L
Sbjct: 164 IL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL      GH  ++ E+L K    +  S  +G   LH AA +GH+++V+ LL     + 
Sbjct: 49  TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
              D +G T LH+A +    E+V++LL+   A V   DKFG TA  ++      ++   L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 297 LSL 299
             L
Sbjct: 166 QKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +    D  G T LH+ V     E++++LL+  AA V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNASDK 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
            G T LH+A  +   EIV  LL     +VNA+     T L +A    + +   EI + L 
Sbjct: 79  SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLA----AEDGHLEIVEVLL 133
Query: 336 RCGAVRANELNQPRDELRKTVTQIKKD 362
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +    + G   LH AAR GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G T LH+A K    E+V++LL+   A V   D  G+T LH+A      EIV  LL 
Sbjct: 76  LDFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
           G  PLH+AA  GH  IV+VLL +   ++       ATPL  AA  GH  +V E+L K G 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLHLAADNGHLEIV-EVLLKHGA 104
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
            +      G   LH AA  GH+++V+ LL     +    DK G+TA  +++   + ++ +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 261 LL 262
           +L
Sbjct: 164 IL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +   TD  G T LH+A K    E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKY-GADVNAWDN 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
           +G T LH+A      EIV E+L     +VNA   +  T L +A    + +   EI + L 
Sbjct: 79  YGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLA----AYDGHLEIVEVLL 133
Query: 336 RCGAVRANELNQPRDELRKTVTQIKKD 362
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 201
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 259
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 317
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 318 AEG 320
           AEG
Sbjct: 183 AEG 185

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 201
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 259
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 317
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 318 AEG 320
           AEG
Sbjct: 183 AEG 185

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 201
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 259
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 317
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 318 AEG 320
           AEG
Sbjct: 183 AEG 185

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH A + GH + V++LL H   ++  T   + TPL +A   G    VN LL + G  ++
Sbjct: 39  PLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN-LLLQHGASVQ 96
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
              S+  + +H AAR+GHV+ V +L++    +  +    G T L++A + Q    VK LL
Sbjct: 97  -PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 154
Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           E+ A +     K  ++ LH   R    E+   L+  
Sbjct: 155 ESGADVNQ--GKGQDSPLHAVARTASEELACLLMDF 188

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH A + GH + V++LL H   ++  T   + TPL +A   G    VN LL    G   
Sbjct: 95  PLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQH--GASV 151
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
              S+  + +H AAR+GHV+ V +L++    +  +    G T L++A + Q    VK LL
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 210
Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           E+ A +     K  ++ LH   R    E+   L+  
Sbjct: 211 ESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDF 244

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L  +G  +      G   LH AA  GH ++V+ LL     +  R
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            D  G T LH+A      E+V++LL+   A V   D +G T LH+A  +   EIV E+L 
Sbjct: 77  -DTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIV-EVLL 133
Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VNA  +  KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 14/224 (6%)
Query: 97  IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
           + + MV NL+   +  ++ E++ S++      + K   TR ++     LH A   GH  I
Sbjct: 5   VSNLMVCNLA---YSGKLEELKESIL------ADKSLATRTDQDSRTALHWACSAGHTEI 55
Query: 157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
           V+ LL     ++     +  +PL  AA+ G   +V  LL K G  +     NG   LH+A
Sbjct: 56  VEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYA 113
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
           A +   ++   LL        + D    TA+H A    + +++ +LL   A+   + D  
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 171
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
           GNT LH+A  ++R E    L+S    ++    ++ KT L +A+G
Sbjct: 172 GNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG 214

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 14/224 (6%)
Query: 97  IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
           + + MV NL+   +  ++ E++ S++      + K   TR ++     LH A   GH  I
Sbjct: 6   VSNLMVCNLA---YSGKLEELKESIL------ADKSLATRTDQDSRTALHWACSAGHTEI 56
Query: 157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
           V+ LL     ++     +  +PL  AA+ G   +V  LL K G  +     NG   LH+A
Sbjct: 57  VEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYA 114
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
           A +   ++   LL        + D    TA+H A    + +++ +LL   A+   + D  
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 172
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
           GNT LH+A  ++R E    L+S    ++    ++ KT L +A+G
Sbjct: 173 GNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG 215

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL  AA  GH  +V E+L ++G  +    +NG   LH AA  GH+++V+ LL     + 
Sbjct: 37  TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
            + D  G T L++A      E+V++LL+   A V   DKFG TA  ++
Sbjct: 96  AK-DATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 141

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 207
           AA  G    V++L+ +   ++  T  +  TPL  AA  G   +V E+L K+G  +  S S
Sbjct: 13  AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
            G   LH AA  GH+++V+ LL     +    D+ G T LH+A      E+V++LL+   
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 268 AIVMLPDKFGNTALHVATRKKRTEI 292
           A V   D  G TA  ++  + + ++
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDL 153

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH-----DPSLSQTTGPSNATPLVSAATRGHTAVVN 192
           + +G   LH +    +  +VQ LLD      D        P   T L +  T+     V 
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
           +L  + G +   +   G+ AL  A   G VDVVKALL+ +  +  + D  G TAL  A +
Sbjct: 168 QLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACE 225
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
               E+  LLL   +  + L D+ G+TAL VA    ++EI + L S
Sbjct: 226 HGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVK 252
           L K G  +     NG   LH+AA +   ++   LL    +P      D    TA+H A  
Sbjct: 93  LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAA 148
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
             + ++V +LL   A+   + D  GNT LH+A  ++R E   + L     ++    ++ K
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVE-EAKFLVTQGASIYIENKEEK 206
Query: 313 TALDIAEG--------LPSSEEAS 328
           T L +A+G        L   EEAS
Sbjct: 207 TPLQVAKGGLGLILKRLAEGEEAS 230

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
           A  G +D +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           G + LH+A    R EIV  LL +   +VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKAL 92
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVK 252
           L K G  +     NG   LH+AA +   ++   LL    +P      D    TA+H A  
Sbjct: 93  LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAA 148
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALT 308
             + ++V +LL   A+   + D  GNT LH+A  ++R E    +VT+  S+   N     
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN----- 202
Query: 309 RDHKTALDIAEG--------LPSSEEAS 328
           ++ KT L +A+G        L   EEAS
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLAEGEEAS 230

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
           A  G +D +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 72
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           G + LH+A      EIV  LL +   +VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Query: 122 VNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 181
           V E+L+ +T + +   +  G  PL+IA       I + L+D    ++     S+ +P + 
Sbjct: 21  VKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD-SPYLY 78
Query: 182 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 241
           A  +G T ++  +L      L      G NAL  AA +GH+D VK LL    +     + 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Query: 242 KGQTALHMAV---KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
            G TAL  AV   +G     ++VKLL+E + A   + D  G TA+  A +K  TEI
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEI 193

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 191
           L  +N     PLH+A +     I + LL    DP L    G    TPL  A  +G  A V
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 94
Query: 192 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 246
             L           +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TA
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 247 LHMAVKGQSCEVVKLLLEADAAI 269
           LH+AV  Q+ ++V LLL+  A +
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADV 177

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 191
           L  +N     PLH+A +     I + LL    DP L    G    TPL  A  +G  A V
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 91
Query: 192 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 246
             L           +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TA
Sbjct: 92  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 247 LHMAVKGQSCEVVKLLLEADAAI 269
           LH+AV  Q+ ++V LLL+  A +
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGADV 174

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
           ++   G+ PLH A       IV++LL H  DP L +  G   ATP + AA  G   ++  
Sbjct: 54  QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG---ATPFILAAIAGSVKLLKL 110
Query: 194 LLSKDGGLLEIS------------------------------------------RSNGKN 211
            LSK   + E                                            R  G  
Sbjct: 111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAA 268
           AL  AA +GHV+V+K LL +        D  G+ AL  A+        E +  LL    A
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 230
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            V +  + G T L +A  KK   +V  LL      +N    D KTAL +A
Sbjct: 231 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 280

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           N  G   LHIA+++G    V+ LL +  DP++    G    TPL  A   GH  VV ELL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVV-ELL 62
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
            +   L+  +     + LH AA+ GHVD+VK LLS
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
           ++   G+ PLH A       IV++LL H  DP L +  G   ATP + AA  G   ++  
Sbjct: 34  QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG---ATPFLLAAIAGSVKLLKL 90
Query: 194 LLSKDGGLLEIS------------------------------------------RSNGKN 211
            LSK   + E                                            R  G  
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAA 268
           AL  AA +GHV+V+K LL +        D  G+ AL  A+        E +  LL    A
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            V +  + G T L +A  KK   +V  LL      +N    D KTAL +A
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +A + DK G T LH+A +    EVVKLLLEA  A V   DK
Sbjct: 31  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDK 88
Query: 276 FGNTALHVA 284
           FG TA  ++
Sbjct: 89  FGKTAFDIS 97

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +A + DK G T LH+A +    EVVKLLLEA  A V   DK
Sbjct: 13  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDK 70
Query: 276 FGNTALHVA 284
           FG TA  ++
Sbjct: 71  FGKTAFDIS 79

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
           S++E L  +  +    +H  A QG    +   ++ +  ++ T      TPL+ AA  G  
Sbjct: 8   SSRENLYFQGANSLS-VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQI 65
Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 248
           AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     +    D  G T L 
Sbjct: 66  AVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLL 123
Query: 249 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 299
            AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I + LL L
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL+ AA  G  AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     + 
Sbjct: 36  TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 93
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIV 293
              D  G T L  AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I 
Sbjct: 94  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 294 TELLSL 299
           + LL L
Sbjct: 154 SHLLKL 159

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 204
           +H  A QG    +   ++ +  ++ T      TPL+ AA  G  AVV E L ++G   ++
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVV-EFLLQNGADPQL 64
Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
                ++AL  A  +G+ D+VK LL     +    D  G T L  AV G   + VK+LLE
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 265 ADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 299
           + A   +  D   N+   A+ +  R  +  I + LL L
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +    D+ G T LH+A +    E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDN 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           FG T LH+A  +   EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +    D+KG T LH+A      E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKH-GADVNAHDN 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            G+T LH+A      EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
           G   LH AA++GH+++V+ LL     +   +D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 269 IVMLPDKFGNTALHVA 284
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
           G   LH AA++GH+++V+ LL     +  R D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 269 IVMLPDKFGNTALHVA 284
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
           PL  AA RG+ + + E L    G+  + ++ G  AL++A   GH D+V+ L ++      
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLL 263
           + +K G TALH A      ++V+LLL
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 270
           N LH AA++G++  ++  L     +    DK G TAL+ A  G   ++V+ L       +
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 271 MLPDKFGNTALHVATRKKRTEIVTELLS 298
              +K G+TALH A  K   +IV  LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
           G   LH AA++GH+++V+ LL     +   +D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 269 IVMLPDKFGNTALHVA 284
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
           G + LH AA+ GH    + LL        RT K  +T LHMA       +V++LL+   A
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLK-HGA 91
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            V   D    TALH AT     E+V ELL     +V+  ++  KTA DI+
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDIS 140

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
           L+ AA  G    V  +L+ +G  +  +   G   LH AA  GH+++V+ LL K+      
Sbjct: 18  LLEAARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           T   G+T LH+A      E+V++LL+   A V   DKFG TA  ++      ++   L  
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Query: 299 L 299
           L
Sbjct: 135 L 135

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +    DK G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            G T LH+       EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 124 ELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 181
           +++K+  + G  + + +  G+ PLH AA  G+  I + L+     +       + TPL  
Sbjct: 87  DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDI 145
Query: 182 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ----GHVDVVKALLSKDPQLAR 237
           A       ++   +++ G  +E +R   +  +   ARQ    GH++ V            
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV------------ 193
Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE---IVT 294
           R  K G TALH+A      EV+KLL++A    V + D  G T LH A    + E   I+ 
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 295 ELLSLPDTNVNALTRDHKTALDIAE 319
           E L     ++ A+ +  +TA D+A+
Sbjct: 253 ENL----CDMEAVNKVGQTAFDVAD 273

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
           + + +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
             LL +D  +  I   NG   L +A R  HV  V+ALL++   L    D  G T + +AV
Sbjct: 86  GLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           ++ +G  PLH A       + Q+LL +  +          TPL+ AA      +V +L++
Sbjct: 80  QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVK 252
            D   +  + ++GK ALH+AA   + + V  LL    ++D Q     D K +T L +A +
Sbjct: 140 ADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-----DDKDETPLFLAAR 193
Query: 253 GQSCEVVKLLLE 264
             S E  K LL+
Sbjct: 194 EGSYEASKALLD 205

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
           ++V   L   +T+  L + +  GF PLH A  +G  A+V++L+     ++      + TP
Sbjct: 17  NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTP 75
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
           L  AA+ GH  +V +LL     +  ++  +G   LH+A   G   V + L++
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDLVA 126

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 201
            D +     +G+   V++ LD+  +          +PL  A   G +AVV E+L   G  
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
           + +        LH AA  GH D+V+ LL     +    ++ G   LH A      +V + 
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 123
Query: 262 LLEADAAIVMLPDKFG 277
           L+ A+ A+V + +K+G
Sbjct: 124 LV-ANGALVSICNKYG 138

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
           +T+  L + +  GF PLH A  +G  A+V++L+     ++      + TPL  AA+ GH 
Sbjct: 22  NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAASHGHR 80
Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
            +V +LL     +  ++  +G   LH+A   G   V + L++
Sbjct: 81  DIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVA 121

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
Query: 143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 202
           D +     +G+   V++ LD+  +          +PL  A   G +AVV E+L   G  +
Sbjct: 2   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGARI 60
Query: 203 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
            +        LH AA  GH D+V+ LL     +    ++ G   LH A      +V + L
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 307
           + A+ A+V + +K+G   +  A    R E++ E       N+N +
Sbjct: 120 V-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 162

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---------LSQ 169
           +S V +L  Y+   G+    R G   LH+A     H    VLL   PS         L+Q
Sbjct: 58  ASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGKNALHFAARQGHVDVVK 226
           +   +  T    AA        NE   +D      LE    +G   LH A      ++V+
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
            L      L +     G+T LH+AV+ Q+  V++LLL+A A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---------LSQ 169
           +S V +L  Y+   G+    R G   LH+A     H    VLL   PS         L+Q
Sbjct: 58  ASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGKNALHFAARQGHVDVVK 226
           +   +  T    AA        NE   +D      LE    +G   LH A      ++V+
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
            L      L +     G+T LH+AV+ Q+  V++LLL+A A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 103 GNLSGAEFDTEVAEI-RSSVVNELLKYSTKEGLTRKNRSGFD--PLHIAAVQGHHAIVQV 159
           G +  +E D ++ E  ++  V  + K  T + +  ++  G    PLH AA     ++V+ 
Sbjct: 1   GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 160 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219
           LL H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +
Sbjct: 61  LLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAK 118
Query: 220 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269
           G  ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA+
Sbjct: 119 GKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 165

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH AA     ++V+ LL H   +          PL +A + GH  V  ELL K G ++ 
Sbjct: 49  PLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVN 106
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
           ++       LH AA +G  ++ K LL    DP    + ++ G T L +   G +   ++ 
Sbjct: 107 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQD 161
Query: 262 LLEADAAIV 270
           LL  DAA++
Sbjct: 162 LLRGDAALL 170

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +  + D+ G T L++A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 330
            G T LH+A      EI  E+L     +VNA  +  KTA DI+ G   +E+ +EI
Sbjct: 79  IGFTPLHLAAFIGHLEI-AEVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEI 131

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 177 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
           TP  +AA +     +++LL  +D   ++    NG+ AL F A  G    V+ L      L
Sbjct: 47  TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
             R  + G TALHMA      EVV+ L+E  A I  + D+ G TAL +A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 151

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH AA     ++V+ LL H   +          PL +A + GH  V  ELL K G ++ 
Sbjct: 47  PLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVN 104
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
           ++       LH AA +G  ++ K LL    DP    + ++ G T L +   G +   ++ 
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQD 159
Query: 262 LLEADAAI 269
           LL  DAA+
Sbjct: 160 LLRGDAAL 167

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 177 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
           TP  +AA +     +++LL  +D   ++    NG+ AL F A  G    V+ L      L
Sbjct: 46  TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
             R  + G TALHMA      EVV+ L+E  A I  + D+ G TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
           R  +V  LL++     +  K++ G  PLH A   GH+ + ++LL H   ++        T
Sbjct: 70  RVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFT 126
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
           PL  AA++    V + LLS  G    +   +GK+A         VD     ++  P+L  
Sbjct: 127 PLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSA---------VD-----MAPTPELRE 171
Query: 238 R--TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH--VATRKKRTEIV 293
           R   + KG + L  A +    +V K L  A   I     +   TALH  VA+   + + V
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 294 TELLSLPDTNVNALTRDHKTALDIA 318
            ELL     NVN   +D  T L +A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVA 254

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
           + + +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
             LL +D  +  I   NG   L +A    HV  V+ALL++   L    D  G T + +AV
Sbjct: 86  GLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 283
           V+   + +   L  +TD+ G+TALH+A +    +  K LLEA +A   + D  G T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHA 61
Query: 284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 321
           A       +   LL    T+++A   D  T L +A  L
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARL 99

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           +PL+ AA       +++LL  +G  +    + G+ ALH AA   +++    L+   P+L 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 237 RRTDK----KGQTALHMAVKGQSCEVVKLLLEADAAI 269
                    +GQTALH+AV  Q+  +V+ LL   A++
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 172 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218
           GP   TPL+ A+  G               AV+++ + +   L   +   G+ ALH AAR
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278
               D  K LL      A   D  G+T LH AV   +  V ++L+   A  +      G 
Sbjct: 67  YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
           T L +A R     ++ +L++    +VNA+    K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 172 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218
           GP   TPL+ A+  G               AV+++ + +   L   +   G+ ALH AAR
Sbjct: 8   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 67
Query: 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278
               D  K LL      A   D  G+T LH AV   +  V ++L+   A  +      G 
Sbjct: 68  YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
           T L +A R     ++ +L++    +VNA+    K+AL
Sbjct: 127 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
           + + ++GG L+   ++G  ALH+AA     D +K LL K   L    ++ G+TAL +A K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 249
Query: 253 GQSCEVVKLLLEADAAIVMLP 273
               E  +LL +A A     P
Sbjct: 250 KHHKECEELLEQAQAGTFAFP 270

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
           N TPL+ A   G    +++L+ ++   LE     G  AL +A +   + + + LLSK   
Sbjct: 35  NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF--GNTALHVATRKKRTEI 292
           +  + D  G+T L  ++     E+   LLE  A +    D+   G T L VA++  R+EI
Sbjct: 94  VNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEI 149
Query: 293 VTELLSL 299
           V +LL L
Sbjct: 150 VKKLLEL 156

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDK 66
Query: 276 FGNTALHVA 284
           FG TA  ++
Sbjct: 67  FGKTAFDIS 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	568
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-41
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-35
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-35
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-05
2rfa_A	232	Transient receptor potential cation channel subfa	6e-35
2rfa_A	232	Transient receptor potential cation channel subfa	5e-29
2rfa_A	232	Transient receptor potential cation channel subfa	1e-18
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	7e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-34
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-30
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-30
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-21
2etb_A	256	Transient receptor potential cation channel subfam	1e-30
2etb_A	256	Transient receptor potential cation channel subfam	1e-22
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-29
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  163 bits (416), Expect = 4e-47
 Identities = 52/249 (20%), Positives = 86/249 (34%), Gaps = 39/249 (15%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLS-GAEFDTEVAEIRSSVVNELLKYSTKE 132
           ++  LH A    +   V+++L           S  +             + +        
Sbjct: 2   SNYPLHQACMENEFFKVQELL----------HSKPSL------------LLQ-------- 31

Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAV 190
               K++ G  PLH +     H I   LL    + +L      S  TP   A + G+  V
Sbjct: 32  ----KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87

Query: 191 VNELLSKDGGL-LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           V  L  +     L    + G   LH A  +   +V + L+     + R  DK  Q  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHR 146

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309
           A    S ++++LL     + V   DK G T L  A  +   +    L+       + +  
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

Query: 310 DHKTALDIA 318
               A D+A
Sbjct: 207 KGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  108 bits (273), Expect = 4e-27
 Identities = 42/234 (17%), Positives = 68/234 (29%), Gaps = 56/234 (23%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYG--IDSQMVGNLSG-------AEFD-TEVAEIRSSVVNE 124
             LH +            +     ++     + SG             EV +        
Sbjct: 38  IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS------- 90

Query: 125 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 184
           L     K  L +    G   LH+A  +    + Q L+++                     
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-------------------- 130

Query: 185 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 244
               A V     KD           +  LH AA  G + +++ L           DK+G 
Sbjct: 131 ----ASVRI---KD--------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175

Query: 245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           T L  A+     +   LL+E   A   L D  G  A  VA  ++  +     L+
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF---FLN 226

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  150 bits (381), Expect = 5e-42
 Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 40/245 (16%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
            ++  A Q G     ++ +  G D                       V +          
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYD-----------------------VRQ---------- 37

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
              ++     LH AA+     +V+  +     + Q  G  N+TPL  A  +GH ++V +L
Sbjct: 38  --PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KG 253
           +   G    +    G + +H AA+ GH  +V  L++K   +    D+ G T L  A  + 
Sbjct: 96  MKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRT 153

Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
            S +  +LLL  + ++ +      NTALH A     T +++ LL     NV+A     ++
Sbjct: 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGES 212

Query: 314 ALDIA 318
           ALD+A
Sbjct: 213 ALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  130 bits (329), Expect = 9e-35
 Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 8/185 (4%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            +      +  A   G +   + L++    + Q     N T L  AA      +V   +S
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKYYIS 63

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQ 254
           K   + ++        LH+A RQGH+ +V  L+    DP L    D +G + +H+A +  
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFG 120

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK-T 313
              +V  L+     + M  D+ G T L  A  +  +   T LL   + +VN   + HK T
Sbjct: 121 HTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179

Query: 314 ALDIA 318
           AL  A
Sbjct: 180 ALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (271), Expect = 8e-27
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 39/199 (19%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
            N T LH A ++G L  V Q + YG D                        +        
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGAD-----------------------PSL------- 104

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA-V 190
                 +  G   +H+AA  GH +IV  L+     +      +  TPL+ AA R H+   
Sbjct: 105 -----IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDP 158

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
              LL+ +  +    + +   ALH+A   G+  V+  LL     +  + + KG++AL +A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLA 217

Query: 251 VKGQSCEVVKLLLEADAAI 269
            + ++  ++  L EA  A 
Sbjct: 218 KQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 36/99 (36%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
           V      H +T LH A   G+   +   +  G +                       V+ 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-----------------------VDA 205

Query: 125 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
                       +N  G   L +A  + +  ++  L + 
Sbjct: 206 ------------QNIKGESALDLAKQRKNVWMINHLQEA 232

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  149 bits (379), Expect = 3e-41
 Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 52/275 (18%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           + +H AA  G   +++  I  G                         VN      T + +
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWA-----------------------VNI----ITADHV 93

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
           +        PLH A + GH + V++LL H   ++  T     TPL +A   G    VN L
Sbjct: 94  S--------PLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLL 144

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
           L   G  ++   S+  + +H AAR+GHV+ V +L++    +  +      T L++A + Q
Sbjct: 145 LQH-GASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQ 201

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
               VK LLE+ A +     K  ++ LH   R    E+   L+     +  A   + K  
Sbjct: 202 QRACVKKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRP 258

Query: 315 LDIAEGLPSSEEASEIKDCLARCGAVRANELNQPR 349
           +++        E+   +  L R GA     L +P+
Sbjct: 259 VELV-----PPESPLAQLFLEREGA----SLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  143 bits (364), Expect = 3e-39
 Identities = 46/242 (19%), Positives = 78/242 (32%), Gaps = 16/242 (6%)

Query: 80  LAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKN 138
           + +           +  G     +    G   D              L       L    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGM-DGSKPAGPRDFPGIRL---LSNPLMGDA 56

Query: 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
            S + P+H AA+ GH   ++ L+    +++  T   + +PL  A   GH + V  LL   
Sbjct: 57  VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKH- 114

Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSC 256
           G  +    ++    L  A   G  D V  LL      Q     +    + +H A +    
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHV 170

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD 316
           E V  L+     I         T L++A   ++   V +LL     +VN   +   + L 
Sbjct: 171 ECVNSLIAYGGNIDH-KISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSPLH 227

Query: 317 IA 318
             
Sbjct: 228 AV 229

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (381), Expect = 4e-40
 Identities = 73/291 (25%), Positives = 113/291 (38%), Gaps = 45/291 (15%)

Query: 71  GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
           G++  T LH+A    +L  VK +L            G               +       
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLL----------PRGGS------------PHS------ 207

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
                    +G+ PLHIAA Q    + + LL +  S +  +     TPL  AA  GH  +
Sbjct: 208 ------PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLAAQEGHAEM 260

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
           V  LLSK      +   +G   LH  A++GHV V   L+     +     + G T LH+A
Sbjct: 261 VALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVA 318

Query: 251 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 310
               + ++VK LL+  A +     K G + LH A ++  T+IVT LL     + N ++ D
Sbjct: 319 SHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSD 376

Query: 311 HKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKK 361
             T L IA           + D L       +  +    D+ R +  +   
Sbjct: 377 GTTPLAIA----KRLGYISVTDVLKVVTDETSF-VLV-SDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  148 bits (376), Expect = 2e-39
 Identities = 79/243 (32%), Positives = 104/243 (42%), Gaps = 39/243 (16%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           T LH+A+  G L  VK +L            GA              N     S  +  T
Sbjct: 16  TPLHVASFMGHLPIVKNLL----------QRGAS------------PNV----SNVKVET 49

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
                   PLH+AA  GH  + + LL +   ++      + TPL  AA  GHT +V  LL
Sbjct: 50  --------PLHMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLL 100

Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
                   ++ + G   LH AAR+GHV+ V ALL K+   A    KKG T LH+A K   
Sbjct: 101 EN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGK 158

Query: 256 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
             V +LLLE DA       K G T LHVA      +IV  LL     + ++   +  T L
Sbjct: 159 VRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPL 216

Query: 316 DIA 318
            IA
Sbjct: 217 HIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 8e-37
 Identities = 61/182 (33%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
              SG  PLH+A+  GH  IV+ LL    S + +      TPL  AA  GHT V   LL 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQ 68

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
                +     + +  LH AAR GH ++VK LL  +          G T LH+A +    
Sbjct: 69  N-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHV 126

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD 316
           E V  LLE +A+   +  K G T LHVA +  +  +   LL   D + NA  ++  T L 
Sbjct: 127 ETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLH 184

Query: 317 IA 318
           +A
Sbjct: 185 VA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  126 bits (318), Expect = 2e-31
 Identities = 56/230 (24%), Positives = 80/230 (34%), Gaps = 50/230 (21%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
               T LHLAAQ G    V   +    +                        N       
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQAN-----------------------GNL------ 273

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
                  N+SG  PLH+ A +GH  +  VL+ H   +  TT     TPL  A+  G+  +
Sbjct: 274 ------GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKL 326

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
           V  LL      +      G + LH AA+QGH D+V  LL             G T L +A
Sbjct: 327 VKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGTTPLAIA 384

Query: 251 VKGQSCEVVKLLLE--ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            +     V  +L     + + V++ DK   +             V E+L 
Sbjct: 385 KRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILD 425

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  146 bits (370), Expect = 4e-40
 Identities = 51/256 (19%), Positives = 76/256 (29%), Gaps = 50/256 (19%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LHLAA  G+   V++    G                         V            
Sbjct: 47  TALHLAAILGEASTVEKLYAAGAG-----------------------VLV---------- 73

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ------------TTGPSNATPLVSA 182
               R G   LH+A     H    VLL   PS  +             T  ++  P    
Sbjct: 74  --AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 242
           +                  LE    +G   LH A      ++V+ L      L +     
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
           G+T LH+AV+ Q+  V++LLL+A A         G T L  A  +    +   L +    
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAH-GA 249

Query: 303 NVNALTRDHKTALDIA 318
                  D  +    +
Sbjct: 250 PEPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (320), Expect = 4e-33
 Identities = 48/259 (18%), Positives = 77/259 (29%), Gaps = 53/259 (20%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LHLA        +   + +                          ++           
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAG--------------------HEYLDL---------- 40

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVN 192
             +N  G   LH+AA+ G  + V+ L        +++  G    T L  A          
Sbjct: 41  --QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG---HTALHLACRVRAHTCAC 95

Query: 193 ELLSK---------DGGLLEISRSNGKN----ALHFAARQGHVDVVKALLSKDPQLARRT 239
            LL           D  L +            A   +      +          QL    
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE- 154

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           +  G T LH+AV  +  E+V+LL +A A +       G T LH+A   +   ++  LL  
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 300 PDTNVNALTRDHKTALDIA 318
              +  A     +T L  A
Sbjct: 215 -GADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  122 bits (308), Expect = 2e-31
 Identities = 40/198 (20%), Positives = 60/198 (30%), Gaps = 19/198 (9%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
               G   LH+A +  H   +  LL                 T L  AA  G  + V +L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD------------PQLARRTDKK 242
            +  G  + ++   G  ALH A R         LL                Q    T   
Sbjct: 65  YAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 243 GQTALHM-AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 301
                 + +      E      +    +    +  G+T LHVA   K  E+V  L     
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDA-G 181

Query: 302 TNVNALTRDH-KTALDIA 318
            ++N       +T L +A
Sbjct: 182 ADLNKPEPTCGRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  122 bits (308), Expect = 2e-31
 Identities = 32/224 (14%), Positives = 56/224 (25%), Gaps = 25/224 (11%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           T LHLA +         +L                  + ++               +   
Sbjct: 80  TALHLACRVRAHTCACVLL----------QPRPSHPRDASDTY-----------LTQSQD 118

Query: 136 RKNRSGFDPLHIAAVQGHHA-IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
               +   P  + +             D    L         TPL  A       +V  L
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLL 177

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
                 L +   + G+  LH A       V++ LL        R    G+T L  A+   
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRP 236

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           +  + +LL    A           +    +     ++   E   
Sbjct: 237 NPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 37/158 (23%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LH+A    D   V+     G D                       +N+        G 
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGAD-----------------------LNKPEP---TCGR 193

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
           T        PLH+A      +++++LL      +        TPL SA  R +  +   L
Sbjct: 194 T--------PLHLAVEAQAASVLELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLL 244

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232
            +  G        +  +    +      D        D
Sbjct: 245 RAH-GAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  144 bits (366), Expect = 7e-40
 Identities = 58/268 (21%), Positives = 97/268 (36%), Gaps = 40/268 (14%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           DT LH+A  +G+L AV +++            G E            ++           
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQG------GRE------------LDI---------- 41

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
              N     PLH+A +    ++V++L+    S          T    A        +  L
Sbjct: 42  --YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRAL 98

Query: 195 LSK---DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
           L         LE    +G  ALH A      + V+ LL +   +     K G++ L  AV
Sbjct: 99  LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158

Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 311
           +  S  +V+LLL+  A +       G++ALH A+ +    +V  L+     + +     +
Sbjct: 159 ENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHN 216

Query: 312 KTALDIAEGLPSSEEASEIKDCLARCGA 339
            T L +A     S    +I    A   A
Sbjct: 217 DTPLMVA----RSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  131 bits (333), Expect = 3e-35
 Identities = 60/195 (30%), Positives = 81/195 (41%), Gaps = 16/195 (8%)

Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS-NA------TPLVSAATRG 186
            TR +  G  PLHIA VQG+   V  L+    +L Q  G   +       TPL  A    
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRELDIYNNLRQTPLHLAVITT 57

Query: 187 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR---RTDKKG 243
             +VV  L++  G        +G+ A H A        ++ALL             +  G
Sbjct: 58  LPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 244 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 303
            TALH+AV  +  E V+LLLE  A I  +  K G + L  A       +V +LL     N
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQHGAN 175

Query: 304 VNALTRDHKTALDIA 318
           VNA      +AL  A
Sbjct: 176 VNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (284), Expect = 1e-28
 Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 66/227 (29%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
           RH  T  HLA +      ++ +L             A    +        +         
Sbjct: 77  RHGQTAAHLACEHRSPTCLRALL----DS------AAPGTLD--------LEA------- 111

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 191
                +N  G   LH+A        VQ+LL+                          A +
Sbjct: 112 -----RNYDGLTALHVAVNTECQETVQLLLERG------------------------ADI 142

Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
           +     D         +G++ L  A     + +V+ LL     +       G +ALH A 
Sbjct: 143 DA---VD-------IKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSAS 191

Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
                 +V+ L+ + A   +  +   +T L VA  ++  +I+    +
Sbjct: 192 GRGLLPLVRTLVRSGADSSL-KNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.6 bits (174), Expect = 8e-14
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADA---AIVMLPDKFGNTALHVATRKKRTE 291
           +A R D+ G T LH+AV   +   V  L+         + + +    T LH+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 292 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELN 346
           +V  L++    +  AL R  +TA  +A        +      L    A    +L 
Sbjct: 61  VVRLLVTA-GASPMALDRHGQTAAHLA----CEHRSPTCLRALLDSAAPGTLDLE 110

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  143 bits (364), Expect = 1e-39
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 40/244 (16%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           + LH AA+ G +      +  G +                       ++           
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGAN-----------------------IDT---------- 39

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
              +     PL  AA   H   V+ L+     +        +T L  AA +GH  VV  L
Sbjct: 40  --CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYL 96

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
           LS     +      G   + +A    HVD+VK LLSK   +  R D +    LH A    
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSG 155

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
             ++ ++LL A   +    +  G++ LH+A R+ R + V   LS  D++V    ++ +T 
Sbjct: 156 CVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETP 213

Query: 315 LDIA 318
           L  A
Sbjct: 214 LQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  117 bits (296), Expect = 3e-30
 Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 37/182 (20%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           ++++   PLH AA  GH  I  +L+                           A ++    
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAG------------------------ANIDT--- 39

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
                      + +  L  AA   H++ VK L+     +  + D +G T LH+A K    
Sbjct: 40  CS--------EDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHY 90

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD 316
           EVV+ LL      V   D  G T +  AT  K  ++V  LLS   +++N    +    L 
Sbjct: 91  EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLH 149

Query: 317 IA 318
            A
Sbjct: 150 WA 151

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  103 bits (260), Expect = 2e-25
 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 38/195 (19%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           T LHLAA++G    V+ +L    S       G              VN            
Sbjct: 79  TCLHLAAKKGHYEVVQYLL----SN------GQ-----------MDVNC----------- 106

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
            ++  G+ P+  A    H  +V++LL     ++          L  AA  G   +   LL
Sbjct: 107 -QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILL 164

Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
           +     L     +G + LH AAR+   D V   LS+D  +  + +K+G+T L  A     
Sbjct: 165 AA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQ 222

Query: 256 CEVVKLLLE--ADAA 268
                 + +   D+A
Sbjct: 223 VWSALQMSKALQDSA 237

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  137 bits (347), Expect = 4e-38
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 4/170 (2%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            +H  A QG    ++  L    +L         TPL+ A+  G    V  LL   G    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPH 63

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
           I     ++AL  A+  G+ D+V  LL +D  +    D  G T L  AV+G   + V+ LL
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALL 122

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
              A  +      G T + +A      ++   + +     +         
Sbjct: 123 ARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  124 bits (313), Expect = 3e-33
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--D 232
           ++  +   A +G    + E L K   L+      G   L +A+  G ++ V+ LL    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
           P       K+ ++AL +A  G   ++V LLLE D  I +  D  G T L  A R    + 
Sbjct: 62  PH---ILAKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKC 117

Query: 293 VTELLSLPDTNVNALTRDHKTALDIA 318
           V  LL+    ++        T +D+A
Sbjct: 118 VEALLAR-GADLTTEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  118 bits (299), Expect = 2e-31
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 45/208 (21%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
             +H  A +G+L  +K+ L            G            ++VN+           
Sbjct: 4   LSIHQLAAQGELDQLKEHL----------RKGD-----------NLVNK----------- 31

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
             +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V  
Sbjct: 32  -PDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER---ESALSLASTGGYTDIVGL 87

Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAV 251
           LL +    + I   NG   L +A R  HV  V+ALL++  D          G T + +AV
Sbjct: 88  LLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE---ADSGYTPMDLAV 143

Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNT 279
                +V +++       +   +     
Sbjct: 144 ALGYRKVQQVIENHILK-LFQSNLVPAD 170

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  140 bits (355), Expect = 6e-38
 Identities = 53/219 (24%), Positives = 74/219 (33%), Gaps = 19/219 (8%)

Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA 189
             E            L  A       +VQ LL+   +++        TPL +A       
Sbjct: 2   AVEDNH--------LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           +V  LL   G    + + NG      AA  G V ++K  LSK   +    D  G TA   
Sbjct: 54  IVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFME 111

Query: 250 AVKGQSCEVVKLLLEADAAI---------VMLPDKFGNTALHVATRKKRTEIVTELLSLP 300
           A      + +K L +  A +              K G TAL  A  K   E++  LL   
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 301 DTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 339
             +VNA     + AL  A       +   I   L   GA
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (346), Expect = 1e-36
 Identities = 71/260 (27%), Positives = 96/260 (36%), Gaps = 53/260 (20%)

Query: 74  NDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
           ++  L  A Q  D+  V+Q +  G +                       VN         
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN-----------------------VNF-------- 33

Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAV 190
              ++   G+ PLH A       IV++LL H  DP L +  G   ATP + AA  G   +
Sbjct: 34  ---QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG---ATPFLLAAIAGSVKL 87

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS---------KDPQLARRTDK 241
           +   LSK G  +      G  A   AA  G V  +K L           K  +   R  K
Sbjct: 88  LKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR---KKRTEIVTELLS 298
            G TAL  A +    EV+K+LL+   A V   D  G  AL  A         E +T LL 
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 299 LPDTNVNALTRDHKTALDIA 318
               +VN      KT L +A
Sbjct: 207 DHGADVNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  134 bits (341), Expect = 5e-36
 Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 37/247 (14%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGN-----LSGAEF--DTEVAEI---RSSVVNE 124
           T LH A Q      V+  + +G D  +           A      ++ ++   + + VNE
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100

Query: 125 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH---------DPSLSQTTGPSN 175
                        +  GF     AAV G    ++ L                 +      
Sbjct: 101 ------------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD----VVKALLSK 231
           AT L+ AA +GH  V+  LL + G  +    + G+NAL  A           +   LL  
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
              +  R  ++G+T L +AV+ +   +V+ LLE +   +   D  G TAL +A   K  +
Sbjct: 209 GADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 292 IVTELLS 298
           I   L  
Sbjct: 268 IAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 9e-26
 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 37/202 (18%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T    AA  G + A+K     G +                       VN   K   KE  
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGAN-----------------------VNLRRKT--KEDQ 141

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHT--- 188
            R  + G   L  AA +GH  ++++LLD    D +     G      L+ A         
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG---RNALIHALLSSDDSDV 198

Query: 189 -AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL 247
            A+ + LL   G  + +    GK  L  A  + H+ +V+ LL ++      TD  G+TAL
Sbjct: 199 EAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 248 HMAVKGQSCEVVKLLLEADAAI 269
            +AV+ +  ++ +LL +  A+ 
Sbjct: 258 LLAVELKLKKIAELLCKRGAST 279

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  139 bits (352), Expect = 8e-38
 Identities = 52/249 (20%), Positives = 87/249 (34%), Gaps = 36/249 (14%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI----RSSVVNELLKYSTK 131
           T L +A+  G            D+              V        +S+ N+       
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDA------------PAVISDFIYQGASLHNQ------- 52

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTA 189
                 +R+G   LH+AA        + LL+   D ++    G    TPL +A +     
Sbjct: 53  -----TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG---RTPLHAAVSADAQG 104

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           V   L+      L+    +G   L  AAR     +++ L++    +    D  G++ALH 
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHW 163

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309
           A    + +   +LL+  A   M  +    T L +A R+   E    LL     N +    
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDH 221

Query: 310 DHKTALDIA 318
             +   DIA
Sbjct: 222 MDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  129 bits (327), Expect = 2e-34
 Identities = 48/232 (20%), Positives = 81/232 (34%), Gaps = 55/232 (23%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LHLAA+     A K+ +    D                        N           
Sbjct: 59  TALHLAARYSRSDAAKRLLEASAD-----------------------ANI---------- 85

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN--------ATPLVSAATRG 186
             ++  G  PLH A       + Q+L+ +          ++         TPL+ AA   
Sbjct: 86  --QDNMGRTPLHAAVSADAQGVFQILIRN--------RATDLDARMHDGTTPLILAARLA 135

Query: 187 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 246
              ++ +L++     +      GK+ALH+AA   +VD    LL        + + + +T 
Sbjct: 136 VEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETP 193

Query: 247 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           L +A +  S E  K+LL+  A    + D        +A  +   +IV  L  
Sbjct: 194 LFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (306), Expect = 2e-31
 Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 27/184 (14%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           +   GF PL IA+  G                            S       AV+++ + 
Sbjct: 6   RGPDGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFIY 44

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQ 254
           +   L   +   G+ ALH AAR    D  K LL    D       D  G+T LH AV   
Sbjct: 45  QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSAD 101

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
           +  V ++L+   A  +      G T L +A R     ++ +L++    +VNA+    K+A
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSA 160

Query: 315 LDIA 318
           L  A
Sbjct: 161 LHWA 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  135 bits (344), Expect = 9e-38
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            +H  A QG    +   ++ +  ++ T      TPL+ AA  G  AVV  LL   G   +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN-GADPQ 63

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
           +     ++AL  A  +G+ D+VK LL     +    D  G T L  AV G   + VK+LL
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 310
           E+ A    +    G  ++ +A       +   + S     +    ++
Sbjct: 123 ESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  120 bits (304), Expect = 3e-32
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-- 231
           +N+  +   A +G    +   + +   ++  +   G   L +AA  G + VV+ LL    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
           DPQL     K  ++AL +A      ++VK+LL+    +    D  G T L  A      +
Sbjct: 61  DPQLL---GKGRESALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVK 116

Query: 292 IVTELLSLPDTNVNALTRDHKTALDIA 318
            V  LL     +    T     ++D+A
Sbjct: 117 CVKMLLES-GADPTIETDSGYNSMDLA 142

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  136 bits (346), Expect = 1e-37
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           K       L  A  +    + ++L D    + +       TPL  A       +   L+ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALID 60

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           + G  + +  S   +   +A  QG  +++  +L        + ++ G  AL  A +    
Sbjct: 61  R-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVA-----TRKKRTEIVTELLSLPDTNVNALTRDH 311
           + VKLLLE     +   + FG TAL  A       +   +IV  L+     + +      
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSG 178

Query: 312 KTALDIA 318
           +TA+D A
Sbjct: 179 RTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  130 bits (330), Expect = 2e-35
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 19/173 (10%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAV 190
            +  G  PL+IA       I + L+D    +       N       +P + A  +G T +
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADI-------NLQNSISDSPYLYAGAQGRTEI 87

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
           +  +L      L      G NAL  AA +GH+D VK LL    +     +  G TAL  A
Sbjct: 88  LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147

Query: 251 VKGQSC-----EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           V  +       ++VKLL+E  A    + D  G TA+  A +K  TEI   L  
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (251), Expect = 2e-24
 Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 46/199 (23%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T L++A    D+   K  I  G D                       +N           
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGAD-----------------------INL---------- 67

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             +N     P   A  QG   I+  +L H               L+ AA +GH   V  L
Sbjct: 68  --QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 195 LSKDGGLLEISRSNGKNALHFAA-----RQGHVDVVKALLSK--DPQLARRTDKKGQTAL 247
           L      ++     G  AL  A       Q + D+VK L+    D  +    D  G+TA+
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK---DNSGRTAM 182

Query: 248 HMAVKGQSCEVVKLLLEAD 266
             A +    E+ K+L + +
Sbjct: 183 DYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 75/167 (44%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
           R+    L  AA++G +  VK  +  G                   +I     +       
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGR-----------------EDI-----DF------ 135

Query: 131 KEGLTRKNRSGFDPLHIAAV-----QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 185
                 +N  G+  L  A       Q +  IV++L+++                      
Sbjct: 136 ------QNDFGYTALIEAVGLREGNQLYQDIVKLLMENG--------------------- 168

Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232
              A  +    KD         +G+ A+ +A ++G+ ++ K L   +
Sbjct: 169 ---ADQSI---KDN--------SGRTAMDYANQKGYTEISKILAQYN 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  136 bits (344), Expect = 4e-37
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 12/186 (6%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
            +R+G   LH+AA        + LL+   D ++    G    TPL +A +     V   L
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG---RTPLHAAVSADAQGVFQIL 77

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVK 252
           +      L+    +G   L  AAR     +++ L++   D       D  G++ALH A  
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN---AVDDLGKSALHWAAA 134

Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
             + +   +LL+  A   M  +    T L +A R+   E   ++L     N +      +
Sbjct: 135 VNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGSYETA-KVLLDHFANRDITDHMDR 192

Query: 313 TALDIA 318
              DIA
Sbjct: 193 LPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  128 bits (325), Expect = 2e-34
 Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 39/234 (16%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
           +   T R  +T LHLAA+     A K+ +    D                        N 
Sbjct: 17  LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-----------------------ANI 53

Query: 125 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 184
                       ++  G  PLH A       + Q+L+ +  +          TPL+ AA 
Sbjct: 54  ------------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101

Query: 185 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 244
                ++ +L++     +      GK+ALH+AA   +VD    LL        + + + +
Sbjct: 102 LAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREE 159

Query: 245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           T L +A +  S E  K+LL+  A    + D        +A  +   +IV  L  
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (291), Expect = 1e-29
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 3/167 (1%)

Query: 152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 211
              A++   +    SL   T  +  T L  AA    +     LL        I  + G+ 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRT 60

Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 271
            LH A       V + L+             G T L +A +     +++ L+ + A +  
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-N 119

Query: 272 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
             D  G +ALH A      +    LL     N +      +T L +A
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLA 165

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  138 bits (350), Expect = 5e-37
 Identities = 57/287 (19%), Positives = 103/287 (35%), Gaps = 39/287 (13%)

Query: 74  NDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGN-----LSGAEFD--TEVAEI---RSSVV 122
           +      A   GD   V + +  G D           L  A  D   ++ +      + +
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 123 NELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 182
           N+             +  G+ PLH AA  G+  I + L+     +         TPL  A
Sbjct: 100 NQ------------PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS-EGDTPLDIA 146

Query: 183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 242
                  ++   +++ G        + + A     R    D  + L S      R   K 
Sbjct: 147 EEEAMEELLQNEVNRQG-------VDIEAARKEEERIMLRDARQWLNSGHINDVRH-AKS 198

Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
           G TALH+A      EV+KLL++A   +  + D  G T LH A    + E    +L     
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEAC-RILVENLC 256

Query: 303 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPR 349
           ++ A+ +  +TA D+A      +    +++   +   +  +E  + +
Sbjct: 257 DMEAVNKVGQTAFDVA----DEDILGYLEELQKKQNLLH-SEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (315), Expect = 3e-32
 Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 11/189 (5%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            +        +    G    ++  +             +    ++A + G T  V  LL 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLE 61

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           + G  +  +  +G  ALH A    +VD+VK L+     + +  D +G   LH A      
Sbjct: 62  R-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYL 119

Query: 257 EVVKLLLE--ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
           ++ + L+   A    V   +  G+T L +A  +   E++   ++    ++ A  ++ +  
Sbjct: 120 DIAEYLISQGAHVGAV---NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 315 L--DIAEGL 321
           +  D  + L
Sbjct: 177 MLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (301), Expect = 3e-30
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 12/177 (6%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            N  G  PL IA  +    ++Q  ++         G                    + L+
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDAR-QWLN 186

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
                      +G  ALH AA +G+ +V+K L+     +    D  G T LH A      
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKE 245

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
           E  ++L+E    +    +K G TA  VA       +  EL    +   +   R+ K+
Sbjct: 246 EACRILVENLCDM-EAVNKVGQTAFDVADEDILGYLE-ELQKKQNLLHSE-KREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
           ++++ +  K         G    ++  + K  +   +           A      E V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           LLE  A I    +  G TALH A      ++V  L+     N+N    +    L  A
Sbjct: 59  LLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAA 113

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  139 bits (353), Expect = 7e-37
 Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 48/274 (17%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQ------------MVGNLSGAEFDTEVAEIRSSV 121
                 L  +  +    +    G   +             +G         E+ +I    
Sbjct: 111 GQMPESLLNECDEREVNE---IGSHVKHCKGQTALHWCVGLGPEY-----LEMIKI---- 158

Query: 122 VNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ----TTGPSNAT 177
              L++       T K+++   PL  A    +   + +++D  PS S            +
Sbjct: 159 ---LVQLGAS--PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213

Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
            L  A       V    +   G  + +  +     L+ + R   V + K LL K      
Sbjct: 214 HLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 238 R------------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 285
           +                    +  A      EV++LL E    + +     G        
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRK 331

Query: 286 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319
           +K    +    L+ P   V   +R    +  +++
Sbjct: 332 KKAAPAVKRMKLA-PSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  129 bits (328), Expect = 2e-33
 Identities = 40/251 (15%), Positives = 79/251 (31%), Gaps = 62/251 (24%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LHLA + G +   K     G                          +         G 
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEV-----------------------HSL------WHGQ 85

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG-PSNATPLVSAATRGHTAVVNE 193
                    P+H+A +     +V  L++                P           V   
Sbjct: 86  K--------PIHLAVMANKTDLVVALVEG--------AKERGQMPESLLNECDEREVN-- 127

Query: 194 LLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
                     +    G+ ALH+    G  +++++K L+        + DK  +T L  A+
Sbjct: 128 -----EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-DKADETPLMRAM 181

Query: 252 KGQSCEVVKLLLEADA----AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 307
           + ++ E + L+++         +   +K GN+ LH A      ++    + +   +VN  
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNME 240

Query: 308 TRDHKTALDIA 318
             +H   L ++
Sbjct: 241 DNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (318), Expect = 5e-32
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            +    + +H+AA +G    V+ L++   S +        T L  A   G       L S
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR-FGCTALHLACKFGCVDTAKYLAS 74

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
                   S  +G+  +H A      D+V AL+           ++GQ    +  +    
Sbjct: 75  VGE---VHSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECDER 124

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATR--KKRTEIVTELLSLPDTNVNALTRDHKTA 314
           EV ++               G TALH       +  E++  L+ L   +  A  +  +T 
Sbjct: 125 EVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETP 176

Query: 315 LDIA 318
           L  A
Sbjct: 177 LMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  116 bits (294), Expect = 7e-29
 Identities = 32/265 (12%), Positives = 66/265 (24%), Gaps = 67/265 (25%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
            H    +HLA                               ++          L++ + +
Sbjct: 82  WHGQKPIHLAVMANKT-------------------------DLVVA-------LVEGAKE 109

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTA 189
            G          P  +        + ++                 T L      G  +  
Sbjct: 110 RGQM--------PESLLNECDEREVNEIGSH-------VKHCKGQTALHWCVGLGPEYLE 154

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR----RTDKKGQT 245
           ++  L+   G          +  L  A    + + +  ++   P  +       +K+G +
Sbjct: 155 MIKILVQL-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213

Query: 246 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT--- 302
            LH A+     +V    +E    + M  D      L+++ R     +  ELL   D    
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNM-EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 303 ---------NVNALTRDHKTALDIA 318
                     V          +  A
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAA 297

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  137 bits (348), Expect = 3e-36
 Identities = 51/259 (19%), Positives = 87/259 (33%), Gaps = 47/259 (18%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYG--IDSQMVGNLSG-------AEFD-TEVAEIRSSVVNE 124
             LH A   G     +  + +G  +++    +L         A  +  EV  +       
Sbjct: 93  VPLHNACSYGHYEVTELLLKHGACVNAM---DLWQFTPLHEAASKNRVEVCSL------- 142

Query: 125 LLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 182
           LL +    G   T  N  G   + +A        +         L              A
Sbjct: 143 LLSH----GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ-------------A 185

Query: 183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH---VDVVKALLSKDPQLARRT 239
           A     A V + L+    +      + + ALH A    H     V + LL K   +    
Sbjct: 186 AREADLAKVKKTLAL-EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEK 243

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           +K   T LH+A +    +V+++L +  A +    D  G TALH A      +    LLS 
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSY 302

Query: 300 PDTNVNALTRDHKTALDIA 318
             ++ + ++    TA  + 
Sbjct: 303 -GSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  130 bits (330), Expect = 8e-34
 Identities = 65/299 (21%), Positives = 98/299 (32%), Gaps = 78/299 (26%)

Query: 47  ALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL--YGIDSQMVGN 104
           AL L++   +    G+ K            EL  AA+ G+   +  +L    ++      
Sbjct: 7   ALDLADPSAKAVLTGEYKK----------DELLEAARSGNEEKLMALLTPLNVN------ 50

Query: 105 LSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 164
                             +              +     PLH+AA      IVQ+LL H 
Sbjct: 51  -----------------CHA------------SDGRKSTPLHLAAGYNRVRIVQLLLQHG 81

Query: 165 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 224
             +          PL +A + GH  V   LL   G  +          LH AA +  V+V
Sbjct: 82  ADVHAKDK-GGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEV 139

Query: 225 VKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA--------------- 267
              LLS   DP L    +  G++A+ MA   +  E +    +  +               
Sbjct: 140 CSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196

Query: 268 -----AIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
                 I     +   TALH A      KR ++   LL     NVN   +D  T L +A
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  105 bits (264), Expect = 6e-25
 Identities = 47/220 (21%), Positives = 77/220 (35%), Gaps = 29/220 (13%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
            H  + + +A        +     G       +L  A       E   + V + L     
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKG------HSLLQA-----AREADLAKVKKTL---AL 200

Query: 132 EG-LTRKNRSGFDPLHIAAVQGHHA---IVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 187
           E    ++ +S    LH A    H     + ++LL    ++++       TPL  AA R H
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAH 259

Query: 188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL 247
             V+  L    G  +    S G+ ALH AA  GH+   + LLS     +     +G TA 
Sbjct: 260 NDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII-SLQGFTAA 317

Query: 248 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 287
            M       E V+ +L     +        +  L  A++ 
Sbjct: 318 QMGN-----EAVQQILSESTPMR---TSDVDYRLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD-VVKALLSKDPQLARRTDKKGQ 244
           G +A+  +L         ++    K+ L  AAR G+ + ++  L   +      +D +  
Sbjct: 4   GKSAL--DLADP-SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKS 59

Query: 245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304
           T LH+A       +V+LLL+  A +    DK G   LH A      E+   LL      V
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKH-GACV 117

Query: 305 NALTRDHKTALDIA 318
           NA+     T L  A
Sbjct: 118 NAMDLWQFTPLHEA 131

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 45/150 (30%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
           +   T LH+AA+R     ++    +G                         +N       
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAK-----------------------MNA------ 275

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
                  +  G   LH AA+ GH    ++LL +    S  +     T             
Sbjct: 276 ------LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL-QGFTAAQMGN-----EA 323

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQG 220
           V ++LS+      +  S+    L  A++ G
Sbjct: 324 VQQILSES---TPMRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
           G+  +    L +  A  V L  ++    L  A R    E +  LL+  + N +A      
Sbjct: 1   GEFGKSALDLADPSAKAV-LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS 59

Query: 313 TALDIA 318
           T L +A
Sbjct: 60  TPLHLA 65

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  138 bits (349), Expect = 3e-36
 Identities = 60/331 (18%), Positives = 102/331 (30%), Gaps = 43/331 (12%)

Query: 19  SPQLSQK--SIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQV---TGRH 73
           S   ++K   I  S   P       +       +++S   + +A    Y+K+       +
Sbjct: 2   SGNRTRKRRMINASVWMPPMENEEKNRKNH-QSITSSQHSLLEASYDGYIKRQRNELQHY 60

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG-------AEFDTEVAEIRSSVVNELL 126
           +          G+          +                 A     + E        + 
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEP-------IT 113

Query: 127 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS-NA------TPL 179
           + S         R     LH  A        + L+ H+       G   NA      TPL
Sbjct: 114 RESVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170

Query: 180 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR-- 237
           + A       +V  L+   G    I   + ++ALH AA      ++  +L+         
Sbjct: 171 MLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229

Query: 238 RTDKKGQTALHMAVKGQSCE---VVKLLLEADAAIVMLP-------DKFGNTALHVATRK 287
             D+ G TAL +    +  +     KLL+E  A +              G TALH A + 
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 288 KRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
               IV  L+    +N +    D KT + +A
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  133 bits (338), Expect = 1e-34
 Identities = 55/259 (21%), Positives = 90/259 (34%), Gaps = 40/259 (15%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
           RHN T LH  A        + ++     + +    GA+            VN        
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GAD------------VNA------- 161

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 191
                 +     PL +A +     +V  L+      +     S  + L  AA      ++
Sbjct: 162 -----MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMM 215

Query: 192 NELLSKD--GGLLEISRSNGKNALHFAARQGH---VDVVKALLSK-------DPQLARRT 239
             +L+     G +E    NG  AL   A       V   K L+ K               
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
             KG+TALH A +  +  +VK L+    +     D+ G T + +A ++ R E+V  L+  
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 300 PDTNVNALTRDHKTALDIA 318
              +V A+     TA  +A
Sbjct: 336 -GASVEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (258), Expect = 4e-24
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 42/202 (20%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           + LH AA   D G +   +  ++S  +             +I      E           
Sbjct: 201 SALHQAAANRDFGMMV-YM--LNSTKLK-----------GDI-----EE----------- 230

Query: 136 RKNRSGFDPLHIAAVQGHH---AIVQVLLDHDPSLSQTTGPSNA-------TPLVSAATR 185
             +R+G   L I A        A  ++L++    +                T L  AA  
Sbjct: 231 -LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
            +  +V  L+ + G   +    +GK  +  AA++G ++VV  L+ +   +    D    T
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHT 348

Query: 246 ALHMAVKGQSCEVVKLLLEADA 267
           A  +A       +V +      
Sbjct: 349 ARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 42/168 (25%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           T L + A       V      ++        GA+            V+            
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEK-------GAK------------VDYDGAARKDS--- 274

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH---DPSLSQTTGPSNA------TPLVSAATRG 186
            +   G   LH AA   +  IV+ L+     +          +       TP++ AA  G
Sbjct: 275 -EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK---------DKQDEDGKTPIMLAAQEG 324

Query: 187 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
              VV  L+ + G  +E   +    A   A    H ++V       P+
Sbjct: 325 RIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  135 bits (343), Expect = 3e-36
 Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 8/183 (4%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            +  G    + A    +  +V  LL+     +      N  PL  AAT   T +V  LL 
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKILLF 83

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
             G         G  AL++A   G++  VK  + K+ +L        +T+ + AV     
Sbjct: 84  S-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 142

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT-AL 315
            +V   L    +          + +H+  +    +++  LL    T+ N          +
Sbjct: 143 SIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDI 199

Query: 316 DIA 318
            +A
Sbjct: 200 KLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  134 bits (339), Expect = 1e-35
 Identities = 37/252 (14%), Positives = 74/252 (29%), Gaps = 49/252 (19%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
             N+  LH AA   D   VK  +  G+D                        ++      
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLD-----------------------DSQ------ 90

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
                  +  G   L+ A   G+   V++ +  +  L         T    A      ++
Sbjct: 91  ------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHM 249
           V+  LS+         +   + +H   + GHVD++  LL          +       + +
Sbjct: 145 VSYFLSE--IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKL 201

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309
           A+  +  E+++ L + D  I         +A          EI   ++        + + 
Sbjct: 202 AIDNKDIEMLQALFKYDINI--------YSANLENVLLDDAEIAKMIIEK-HVEYKSDSY 252

Query: 310 DHKTALDIAEGL 321
                +     L
Sbjct: 253 TKDLDIVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
           G   L      +S ++   L   D       D  G++A + A       +V  LL+    
Sbjct: 1   GMD-LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNA-GA 55

Query: 303 NVNALTRDHKTALDIA 318
             N    +++  L  A
Sbjct: 56  LKNL--LENEFPLHQA 69

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  132 bits (335), Expect = 7e-36
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 75  DTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEG 133
             ++  A    +     +  +   D   + ++S   +    ++ R+ ++           
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA----- 67

Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
              +  S  +PLH AA +G+ + ++  LD+    +     G   +T L  A   GH  +V
Sbjct: 68  --EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG---STALYWACHGGHKDIV 122

Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
             L ++    L      G  ALH AA +G+ D+V+ LL+K  +   R + + + A  MA 
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMAT 181

Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 287
                 ++K     DA    L +         +  +
Sbjct: 182 NAACASLLKKKQGTDAVRT-LSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  130 bits (328), Expect = 7e-35
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 9/181 (4%)

Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
            + G   +  A           L   +  +   T  S+ T      ++G T ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP----- 62

Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
               +     +  N LH AA++G++  ++  L     +    DK G TAL+ A  G   +
Sbjct: 63  -SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKD 120

Query: 258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 317
           +V++L       +   +K G+TALH A  K   +IV  LL+      +    + K A D+
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDM 179

Query: 318 A 318
           A
Sbjct: 180 A 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  103 bits (260), Expect = 1e-25
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 176 ATPLVSAATRGHTAVVN----------ELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 225
           + P       G   V            + L  + G +                +G   ++
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

Query: 226 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 285
            +    +        +     LH A K  +   ++  L+     V   DK G+TAL+ A 
Sbjct: 62  PSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWAC 114

Query: 286 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
                +IV  L + P+  +N   +   TAL  A
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  135 bits (340), Expect = 4e-35
 Identities = 52/299 (17%), Positives = 92/299 (30%), Gaps = 47/299 (15%)

Query: 60  AGKKKYVKQVTGRH--NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI 117
              K+       +   ++    +AA  G   A+  +   + S  +  +  AE     A  
Sbjct: 76  RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ--AFR 133

Query: 118 RSS------VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL-SQT 170
            ++      V+N L + +  E +       +    +AA  GH  ++  L +  P+  +  
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193

Query: 171 TGPSNATPLVSAATR-GHTAVVNELLSKD------------GGLLEI-----SRSNGKNA 212
               N      AA   GH  V+N LL                G   +        N    
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG---QSCEVVKLLLEADA-- 267
           +H A +  + D V  L++K          +G   L   ++       + ++ LL      
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSEC------LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307

Query: 268 --AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV-----NALTRDHKTALDIAE 319
             A         N  L +A R         LLS+P         N    +    LD+  
Sbjct: 308 ALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.8 bits (194), Expect = 6e-16
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 21/219 (9%)

Query: 102 VGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 161
           + N+   E D ++  I   +   L ++                        +   + + L
Sbjct: 6   IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLS-----------YKEAIHIFL 54

Query: 162 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 221
               ++ Q          +      H     + L  D     I                 
Sbjct: 55  PGTKNMEQVRQ-------LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSA 107

Query: 222 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM-LPDKFGNTA 280
           +D +  LL+ D  +      +   A  +A +     V+  L E     +M +       A
Sbjct: 108 LDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166

Query: 281 LHVATRKKRTEIVTELLSL-PDTNVNALTRDHKTALDIA 318
             +A       ++  L  L P      +  ++  A   A
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 32/217 (14%), Positives = 58/217 (26%), Gaps = 31/217 (14%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDT--EVAEIRS---SVVNELL 126
             N     LAA+ G L  +   L  +       +  AE       A +     +V+N LL
Sbjct: 161 AENYHAFRLAAENGHLHVLN-RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219

Query: 127 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD------------HDPSLSQTTGPS 174
                  L       F+             V  L +                ++++    
Sbjct: 220 DCPVM--LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 175 NATPLVSAATRGHTAVVNEL-------LSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 227
               L +   R    +++++         K          +    L  A R G+      
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
           LLS    L            ++   G   ++  + LE
Sbjct: 338 LLSIPSVL----ALTKANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 14/128 (10%)

Query: 45  APALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN 104
                + ++ K  +  G    V +         L    +R D   +  I + +    +  
Sbjct: 249 NRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 308

Query: 105 LSGAEFDTEVAEI---------RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 155
           L+        A                  LL   +   LT+ N       +I    G   
Sbjct: 309 LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN-----NYYINETGGRLD 363

Query: 156 IVQVLLDH 163
           +  V L+H
Sbjct: 364 LRAVALEH 371

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  113 bits (286), Expect = 5e-29
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 18/196 (9%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           +PL+ AA       +++LL  +G  +    + G+ ALH AA   +++    L+   P+L 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 237 RRT----DKKGQTALHMAVKGQSCEVVKLLLEADAAI------------VMLPDKFGNTA 280
                    +GQTALH+AV  Q+  +V+ LL   A++                  +G   
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 281 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA- 339
           L  A      EIV  L+     ++ A      T L I    P+   A ++ + L      
Sbjct: 125 LSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 340 VRANELNQPRDELRKT 355
                L    +    T
Sbjct: 184 DHLKSLELVPNNQGLT 199

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLAR-----RTDKKGQTALHMAVKGQSCEVVKLLL 263
            ++ L  AA++  V  +  LL             +    G+TALH+A    + E   +L+
Sbjct: 3   WESPLLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57

Query: 264 EADAAIVMLP----DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319
           EA   +V  P       G TALH+A   +   +V  LL+    +V+A             
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHN 116

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
              + L +A ++   + +++LL      V+      +TAL IA
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA 44

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 19/120 (15%)

Query: 58  DQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQ-ILYG--IDSQMVGNLSG------- 107
                  Y       + +  L  AA  G    V+  I +G  I +Q   +  G       
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ---DSLGNTVLHIL 161

Query: 108 AEFDTEVAEIRSSVVNELLKY----STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
                +       + N LL Y      K      N  G  P  +A V+G+  + Q L+  
Sbjct: 162 ILQPNK--TFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  127 bits (322), Expect = 9e-34
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 7/182 (3%)

Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 199
           +G   L               + H   +     P     L+ ++  G   +V  ++ +  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYE-V 60

Query: 200 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 259
               +    G  ALH A   GH ++VK L+     +    D  G T LH A    + +V 
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVC 119

Query: 260 KLLLEADAAI--VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 317
           K L+E+ AA+  +   D            +  T+    L  +    +  + +    AL  
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWD 178

Query: 318 AE 319
            E
Sbjct: 179 YE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  114 bits (288), Expect = 3e-29
 Identities = 43/252 (17%), Positives = 76/252 (30%), Gaps = 52/252 (20%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
             L    +        + I +G+                        V           L
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMR-----------------------VKF-----NPLPL 38

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVN 192
                     L  ++++G   +VQ ++    DPSL    G    T L +A   GHT +V 
Sbjct: 39  A--------LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG---ITALHNAVCAGHTEIVK 87

Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT--DKKGQTALHMA 250
            L+   G  +  + S+G   LH AA   +V V K L+     +   T  D +        
Sbjct: 88  FLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146

Query: 251 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 310
           ++    +  + L      +  + +K    AL     +       EL       +  + R+
Sbjct: 147 MEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQN----DDELPMKEGDCMTIIHRE 201

Query: 311 H--KTALDIAEG 320
              +     A  
Sbjct: 202 DEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           +  GQ +L    +    +     +     +    +      L  ++ +   ++V  ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 300 PDTNVNALTRDHKTALDIA 318
              + +    +  TAL  A
Sbjct: 60  -VDDPSLPNDEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 2/46 (4%)

Query: 273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           P+  G  +L    R    +  +E ++     V          L  +
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDS 44

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  125 bits (316), Expect = 1e-33
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 8/168 (4%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
             D +     +G+   V++ LD+  +          +PL  A   G +AVV  L+ + G 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GA 63

Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEV 258
            + +        LH AA  GH D+V+ LL    D       ++ G   LH A      +V
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQV 120

Query: 259 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
            + L+   A +  + +K+G   +  A    R  +      +   N+N 
Sbjct: 121 AEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKM-GQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (302), Expect = 1e-31
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
             + +    G+   V   L      L     +G + LH+A R+G   VV+ L+ +    A
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG---A 63

Query: 237 R--RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
           R    ++   T LH+A      ++V+ LL+  A I    ++ GN  LH A    + ++  
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAE 122

Query: 295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 339
           +L++     V+   +  +  +D A     +     +++   + G 
Sbjct: 123 DLVAN-GALVSICNKYGEMPVDKA----KAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 99.8 bits (250), Expect = 1e-24
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
              + +    R+G+   V+  L        + D  G + LH A +     VV++L+   A
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            I  + ++  +T LH+A      +IV +LL     ++NA+       L  A
Sbjct: 64  RI-NVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
             +    +    +  +   V+L L+     +   D  G + LH A R+ R+ +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 300 PDTNVNALTRDHKTALDIA 318
               +N + R   T L +A
Sbjct: 62  -GARINVMNRGDDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 16/117 (13%), Positives = 26/117 (22%), Gaps = 43/117 (36%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
           H +  LH A   G     +  +  G                         V+        
Sbjct: 104 HGNVPLHYACFWGQDQVAEDLVANGAL-----------------------VSI------- 133

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
                 N+ G  P+  A       + +       +L       N  P      +G T
Sbjct: 134 -----CNKYGEMPVDKAKAPLRELLRERAEKMGQNL-------NRIPYKDTFWKGTT 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  122 bits (310), Expect = 9e-33
 Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           R    G     I    GH             +         TP  +AA +     +++LL
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLL 64

Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
                 ++    NG+ AL F A  G    V+ L      L  R  + G TALHMA     
Sbjct: 65  E--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 122

Query: 256 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            EVV+ L+E  A I  + D+ G TAL +A    +T      + 
Sbjct: 123 PEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  109 bits (276), Expect = 4e-28
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 9/145 (6%)

Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DP 233
            A   +     GH+              ++  S  +     AAR+     +  LL   D 
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIAA---DVV-SEYETPWWTAARKADEQALSQLLEDRDV 69

Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
                 D+ G+TAL       S + V+LL EA A +     + G TALH+A    R E+V
Sbjct: 70  D---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 126

Query: 294 TELLSLPDTNVNALTRDHKTALDIA 318
             L+ L   ++        TAL++A
Sbjct: 127 EALVEL-GADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 95.6 bits (239), Expect = 4e-23
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 21/142 (14%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNA------TPLVSAATRGHTA 189
                  P   AA +     +  LL+  D          +A      T L+  A  G   
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRDV---------DAVDENGRTALLFVAGLGSDK 90

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTAL 247
            V  L      L       G  ALH AA     +VV+AL+    D ++    D++G TAL
Sbjct: 91  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGLTAL 147

Query: 248 HMAVKGQSCEVVKLLLEADAAI 269
            +A +          ++    I
Sbjct: 148 ELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
           +  RT  +G     +  K              A +         T    A RK   + ++
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALS 61

Query: 295 ELLSLPDTNVNALTRDHKTALDIA 318
           +LL   D +V+A+  + +TAL   
Sbjct: 62  QLLE--DRDVDAVDENGRTALLFV 83

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 21/133 (15%), Positives = 32/133 (24%), Gaps = 40/133 (30%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSG-------AEFD-TEVAEIRSSVVNELL 126
           T L   A  G    V+     G D        G       A +   EV E        L+
Sbjct: 78  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA-------LV 130

Query: 127 KYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 184
           +     G  +  ++  G   L +A            +                       
Sbjct: 131 EL----GADIEVEDERGLTALELAREILKTTPKGNPMQF------------------GRR 168

Query: 185 RGHTAVVNELLSK 197
            G   V+N L  +
Sbjct: 169 IGLEKVINVLEGQ 181

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  122 bits (308), Expect = 2e-32
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 18/169 (10%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAV 190
           ++     PL +A + G    +  L+++   L               T L+ A       +
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLVENFDKL-------EDKDIEGSTALIWAVKNNRLGI 83

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHM 249
             +LLSK G  +     +GK  L ++   G+ ++   LL     +  R  + +G+T L +
Sbjct: 84  AEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR--NLEGETPLIV 140

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           A K    E+VK LLE  A I    D  G TA   A    R E++     
Sbjct: 141 ASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  115 bits (292), Expect = 3e-30
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 19/186 (10%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
            +++G     I   +  +  +  L    D            N TPL+ A   G    +++
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNYRDSY----------NRTPLMVACMLGMENAIDK 53

Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVK 252
           L+      LE     G  AL +A +   + + + LLSK   +  +  D  G+T L  ++ 
Sbjct: 54  LVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK--DFSGKTPLMWSII 110

Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
               E+   LLE  A +    +  G T L VA++  R+EIV +LL L   +++A      
Sbjct: 111 FGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGL 168

Query: 313 TALDIA 318
           TA   A
Sbjct: 169 TAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.8 bits (250), Expect = 2e-24
 Identities = 41/204 (20%), Positives = 66/204 (32%), Gaps = 53/204 (25%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
           +N T L +A   G   A+ + +                            + +       
Sbjct: 34  YNRTPLMVACMLGMENAIDKLVENFDK-----------------------LED------- 63

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATR 185
                K+  G   L  A       I + LL    ++       N       TPL+ +   
Sbjct: 64  -----KDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-------NTKDFSGKTPLMWSIIF 111

Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQ 244
           G++ +   LL   G  +      G+  L  A++ G  ++VK LL     + AR  D  G 
Sbjct: 112 GYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR--DLTGL 168

Query: 245 TALHMAVKGQSCEVVKLLLEADAA 268
           TA   A      EV+K+  E   A
Sbjct: 169 TAEASARIFGRQEVIKIFTEVRRA 192

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (305), Expect = 3e-32
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            L  AA  G    V++L+ +   ++     S  TPL  AA  GH  +V  LL   G  + 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLLKN-GADVN 74

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
                G   L  AA  GH+++V+ LL    D       D +G T LH+A      E+V++
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           LL+  A +    DKFG TA  ++      ++   L  
Sbjct: 132 LLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (279), Expect = 1e-28
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
             L+ AA  G    V  L++  G  +    ++G   LH AA  GH+++V+ LL     + 
Sbjct: 16  KKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
              D  G T L +A      E+V++LL+  A +    D  G+T LH+A      EIV  L
Sbjct: 75  AV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 297 LSLPDTNVNALTRDHKTALDIA 318
           L     +VNA  +  KTA DI+
Sbjct: 133 LKN-GADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 207 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 266
           S+    L  AAR G  D V+ L++    +    D  G T LH+A      E+V++LL+  
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 267 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           A +    D  G T L +A      EIV  LL     +VNA   +  T L +A
Sbjct: 71  ADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 81.3 bits (202), Expect = 3e-18
 Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 42/160 (26%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LHLAA  G L  V+  +  G D                       VN           
Sbjct: 49  TPLHLAAFNGHLEIVEVLLKNGAD-----------------------VNA---------- 75

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVN 192
              + +G  PL +AA+ GH  IV+VLL +  D + +   G    TPL  AA  GH  +V 
Sbjct: 76  --VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG---HTPLHLAAMFGHLEIVE 130

Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232
            LL   G  +      GK A   +   G+ D+ + L   +
Sbjct: 131 VLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 61.6 bits (151), Expect = 2e-11
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
                  L  A +    + V++L+   A +    D  G T LH+A      EIV  LL  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 300 PDTNVNALTRDHKTALDIA 318
              +VNA+     T L +A
Sbjct: 70  -GADVNAVDHAGMTPLRLA 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (303), Expect = 4e-32
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
             D L  AA +G    V+ LL  +            T L      G TA+  ELL + G 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQ-GA 59

Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
              +  ++G + +H AAR G +D +K L+     +    D  G   +H+AV+     VV 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS 118

Query: 261 LLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            L   +D   +   D  G T L +A ++   ++V  L  
Sbjct: 119 FLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  115 bits (292), Expect = 1e-30
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 234
             L  AA RG    V  LL ++    +     GK AL      G   +   LL +   P 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
           +    D  G + +H A +    + +K+L+E  A +  +PD  G   +H+A ++  T +V+
Sbjct: 63  VQ---DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS 118

Query: 295 ELLSLPDTNVNALTRDHKTALDIA 318
            L +  +++++       T L++A
Sbjct: 119 FLAA--ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 93.2 bits (233), Expect = 2e-22
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
             + L  AA +G V  V+ LL ++       ++ G+TAL + + G S  +   LL+  A+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS 60

Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
              + D  G + +H A R    + +  L+     +VN         + +A
Sbjct: 61  P-NVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 301
           +    L  A      + V+ LL  +       ++FG TAL V      T I  ELL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQ-G 58

Query: 302 TNVNALTRDHKTALDIA 318
            + N       + +  A
Sbjct: 59  ASPNVQDTSGTSPVHDA 75

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 35/88 (39%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
             +HLA Q G    V   L           + ++            ++            
Sbjct: 103 LPIHLAVQEGHTAVVS-FL----------AAESD------------LHR----------- 128

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
            ++  G  PL +A  +G   +V +L  H
Sbjct: 129 -RDARGLTPLELALQRGAQDLVDILQGH 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  122 bits (309), Expect = 5e-32
 Identities = 46/244 (18%), Positives = 78/244 (31%), Gaps = 67/244 (27%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LHLA         +  +  G D                                    
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCD-----------------------PEL---------- 73

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             ++  G  PLH+A  QG  A V VL                       T    +++   
Sbjct: 74  --RDFRGNTPLHLACEQGCLASVGVLTQSC------------------TTPHLHSILKA- 112

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
              +         NG   LH A+  G++ +V+ L+S    +  +    G+TALH+AV  Q
Sbjct: 113 --TN--------YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
           + ++V LLL+  A +  +    G +   +   +  T I  +L  L       +  + +  
Sbjct: 163 NPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDE 220

Query: 315 LDIA 318
               
Sbjct: 221 ESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  107 bits (270), Expect = 9e-27
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 51/194 (26%)

Query: 137 KNRSGFDPLHIAAVQGHHA----IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
               G   LH+A +    A    +++ +                            A +N
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL------------------------AFLN 39

Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMA 250
               ++        +  +  LH A      ++ +ALL    DP+L    D +G T LH+A
Sbjct: 40  F---QN--------NLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLA 85

Query: 251 VKGQSCEVVKLLLEADA-----AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN 305
            +      V +L ++       +I+   +  G+T LH+A+      IV  L+SL   +VN
Sbjct: 86  CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVN 144

Query: 306 ALTRDH-KTALDIA 318
           A    + +TAL +A
Sbjct: 145 AQEPCNGRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  101 bits (253), Expect = 2e-24
 Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 66/223 (29%)

Query: 72  RHNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYST 130
              +T LHLA ++G L +V           +                  S++        
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHL-----------------HSILKA------ 112

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
                  N +G   LH+A++ G+  IV++L+                           A 
Sbjct: 113 ------TNYNGHTCLHLASIHGYLGIVELLVSLG------------------------AD 142

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
           VN    ++         NG+ ALH A    + D+V  LL     + R    +G +   + 
Sbjct: 143 VNA---QEP-------CNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLT 191

Query: 251 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
               S  + + L +     +              T  + TE  
Sbjct: 192 WGRPSTRIQQQLGQLTLENLQ-MLPESEDEESYDTESEFTEFT 233

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  119 bits (301), Expect = 1e-31
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 20/166 (12%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNEL 194
             + L  AA +G    +  LL ++ ++       NA      T L      G+  +   L
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNV-------NAQNGFGRTAL-QVMKLGNPEIARRL 56

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVK 252
           L + G   ++    G   +H AAR G +D ++ LL      A     D +G   LH+A K
Sbjct: 57  LLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAK 112

Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
                VV+ L++  A+ V   +  G+TA  +A    R E+V+ + +
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  108 bits (272), Expect = 9e-28
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
             L SAA RG    +  LL      +      G+ AL      G+ ++ + LL +     
Sbjct: 7   NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD 64

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
            + D+ G   +H A +    + ++ LLE  A +  + D  GN  LH+A ++    +V  L
Sbjct: 65  LK-DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 297 LSLPDTNVNALTRDHKTALDIA 318
           +    +NV        TA D+A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
              N L  AA +G ++ + +LL  +  +    +  G+TAL +   G + E+ + LL   A
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKLG-NPEIARRLLLRGA 61

Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
               L D+ G   +H A R    + +  LL     +VN    +    L +A
Sbjct: 62  NP-DLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLA 110

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  121 bits (306), Expect = 2e-31
 Identities = 39/245 (15%), Positives = 70/245 (28%), Gaps = 52/245 (21%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEG 133
            +T    AA++ D  A+ Q+L   D                       V+          
Sbjct: 45  YETPWWTAARKADEQALSQLLEDRD-----------------------VDA--------- 72

Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
               + +G   L   A  G    V++L +    L         T L  AA      VV  
Sbjct: 73  ---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
           L+   G  +E+    G  AL  A            +       RR   +    +      
Sbjct: 130 LVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQF----GRRIGLEKVINVLEGQVF 184

Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
           +  EV +++ +            G    ++   K   +    +  +      A  +D++ 
Sbjct: 185 EYAEVDEIVEK---------RGKGKDVEYLVRWKDGGDCE-WVKGVHVAEDVA--KDYED 232

Query: 314 ALDIA 318
            L+ A
Sbjct: 233 GLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  121 bits (305), Expect = 2e-31
 Identities = 43/181 (23%), Positives = 65/181 (35%), Gaps = 8/181 (4%)

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
           R    G     I    GH             +         TP  +AA +     +++LL
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLL 65

Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
                 ++    NG+ AL F A  G    V+ L      L  R  + G TALHMA     
Sbjct: 66  E--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123

Query: 256 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTRDHKTA 314
            EVV+ L+E  A I  + D+ G TAL +A    +T      +       +  +    +  
Sbjct: 124 PEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182

Query: 315 L 315
           +
Sbjct: 183 V 183

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 83.4 bits (207), Expect = 3e-18
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 200 GLLEISRSNGKNA--LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
             +  SR+ G+ A       + GH             +      + +T    A +    +
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQ 59

Query: 258 VVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL-TRDHKTAL 315
            +  LLE  D   V   D+ G TAL         + V  L      +++    R   TAL
Sbjct: 60  ALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTAL 115

Query: 316 DIA 318
            +A
Sbjct: 116 HMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.0 bits (180), Expect = 9e-15
 Identities = 29/188 (15%), Positives = 48/188 (25%), Gaps = 38/188 (20%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSG-------AEFD-TEVAEIRSSVVNELL 126
           T L   A  G    V+     G D        G       A +   EV E        L+
Sbjct: 79  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA-------LV 131

Query: 127 KYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT 184
           +     G  +  ++  G   L +A            +     +    G      ++    
Sbjct: 132 EL----GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI----GLEKVINVLEGQV 183

Query: 185 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 244
             +  V   ++ K G         GK+  +    +   D            A    K  +
Sbjct: 184 FEYAEVDE-IVEKRG--------KGKDVEYLVRWKDGGDCEWVKGVHV---AEDVAKDYE 231

Query: 245 TALHMAVK 252
             L  AV 
Sbjct: 232 DGLEYAVA 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (301), Expect = 1e-30
 Identities = 45/293 (15%), Positives = 84/293 (28%), Gaps = 83/293 (28%)

Query: 72  RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
            ++   +  A  + +   ++ +L                               L+ S K
Sbjct: 11  LYDRRSIFDAVAQSNCQELESLL-----------------------------PFLQRSKK 41

Query: 132 EGL---TRKNRSGFDPLHIAAV---QGHHAIVQVLLDHDPSLSQTTGPSNA--------- 176
                  +   +G   L  A +    G +  + +LLD            NA         
Sbjct: 42  RLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG 101

Query: 177 -TPLVSAATRGHTAVVNELLSK--------DGGLLEISRSN-----GKNALHFAARQGHV 222
            T L  A  R +  +V  L+          +G   + ++       G+  L  AA    +
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 223 DVVKALLSKDPQLA--RRTDKKGQTALHMAVKGQ---------SCEVVKLLLEADA---- 267
            +VK LL    Q A     D  G T LH  V+              +   +L   A    
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 268 --AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
              +  + ++ G T L +A    +  ++  +L   + +              A
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEP-------ECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  100 bits (251), Expect = 6e-24
 Identities = 36/232 (15%), Positives = 58/232 (25%), Gaps = 50/232 (21%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-------TPL---VSAATRG 186
                   +  A  Q +   ++ LL       +    S         T L   +     G
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68

Query: 187 HTAVVNELLSKDGGLLEISR----------SNGKNALHFAARQGHVDVVKALLSK----- 231
               +  LL        + +            G+ ALH A  + ++ +V  L+       
Sbjct: 69  QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 232 --------DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAIVMLPDKFGNTAL 281
                        R     G+  L +A       +VK LL+     A +   D  GNT L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188

Query: 282 HVATRKKRTEIVTELLSL---------------PDTNVNALTRDHKTALDIA 318
           H         +                               R   T L +A
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 39/179 (21%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYG--IDSQMVGNLSGAEFDTEVAEI------------RSS 120
           T LH+A +R ++  V   +  G  + +   G+                         + +
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

Query: 121 VVNELLKYSTKE-GLTRKNRSGFDPLHIAAVQGHHAIVQV---------LLDHDPSLSQT 170
           +V  LL+ S +   ++ ++  G   LH       + +            +L     L  T
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222

Query: 171 TGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 223
                       TPL  AA+ G   V+  +L ++         +     H AA   H  
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------IHEPECRHAAAHHHHHH 273

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  119 bits (300), Expect = 1e-30
 Identities = 47/282 (16%), Positives = 75/282 (26%), Gaps = 71/282 (25%)

Query: 74  NDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
           N   L     RG    ++ +L + +                        + +        
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTH-------KKR------------LTDEEFREPST 45

Query: 133 GLTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQTTGPSNA----------TPL 179
           G T         L  A +    G +  + +LLD            N+          T L
Sbjct: 46  GKT--------CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTAL 97

Query: 180 VSAATRGHTAVVNELLSK-------------DGGLLEISRSNGKNALHFAARQGHVDVVK 226
             A  R     V  L+ K                        G+  L  AA      +V 
Sbjct: 98  HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVH 157

Query: 227 ALLSKDPQLA--RRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAI------ 269
            L     + A  RR D +G T LH  V              ++  LLL   A +      
Sbjct: 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217

Query: 270 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 311
             L +  G + L +A +  +  I   ++     +  A    H
Sbjct: 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 91.0 bits (226), Expect = 9e-21
 Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 40/205 (19%)

Query: 175 NATPLVSAATRG----HTAVVNELLSKDGGLLEI---SRSNGKNALHFAA---RQGHVDV 224
           N   L    +RG       +++ LL+    L +      S GK  L  A      G  D 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 225 VKALLSKDPQLARRT----------DKKGQTALHMAVKGQSCEVVKLLLEADAAI----- 269
           +  LL    +                 +GQTALH+A++ +    V+LL+E  A +     
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 270 --------VMLPDKFGNTALHVATRKKRTEIVTELLS--LPDTNVNALTRDHKTALDIA- 318
                         FG   L +A    +  IV  L        ++        T L    
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 319 ----EGLPSSEEASEIKDCLARCGA 339
                   +++  +++ D L    A
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCA 209

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  119 bits (299), Expect = 1e-30
 Identities = 50/281 (17%), Positives = 74/281 (26%), Gaps = 70/281 (24%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEG 133
           +   L     RG    +  +L                           +    KY T   
Sbjct: 2   DRDRLFSVVSRGVPEELTGLL-------------------------EYLRWNSKYLTDS- 35

Query: 134 LTRKNRSGFDPLHIAAV---QGHHAIVQVLLDHDPSLSQTTGPSNA----------TPLV 180
              +  +G   L  A +    G +A +  LL  D          NA          + L 
Sbjct: 36  AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH 95

Query: 181 SAATRGHTAVVNELLS-------KDGGLL-----EISRSNGKNALHFAARQGHVDVVKAL 228
            A  +     V  L+        +  G             G+  L  AA     DVV  L
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

Query: 229 LSKDPQLA--RRTDKKGQTALHMAVKGQ----------------SCEVVKLLLEADAAIV 270
           L    Q A    TD  G T LH  V                     ++   L        
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL-E 214

Query: 271 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 311
            + +  G T L +A ++ + EI   +L    +   A    H
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.8 bits (241), Expect = 1e-22
 Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 34/178 (19%)

Query: 175 NATPLVSAATRGHTAVVNELL------SKDGGLLEISR-SNGKNALHFAA---RQGHVDV 224
           +   L S  +RG    +  LL      SK       +  S GK  L  A    + G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 225 VKALLSKDPQLARRT----------DKKGQTALHMAVKGQSCEVVKLLLEADAAI----- 269
           +  LL  D                   +G +ALH+A++ +S + VKLL+E  A +     
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 270 -------VMLPDKFGNTALHVATRKKRTEIVTELLS--LPDTNVNALTRDHKTALDIA 318
                        FG   L +A   K+ ++VT LL       ++ A      T L   
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 36/167 (21%)

Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRT-------DKKGQTALHMAVKGQSC---EV 258
            ++ L     +G  + +  LL      ++            G+T L  AV          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 259 VKLLLEADA----------AIVMLPDKFGNTALHVATRKKRTEIVTELLS---------- 298
           +  LL+ D           A        G++ALH+A  K+  + V  L+           
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 299 --LPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN 343
                 +        +  L +A    +  +  ++   L       A+
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLA----ACTKQWDVVTYLLENPHQPAS 164

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  115 bits (291), Expect = 2e-30
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            L  AA  G    V++L+ +    +        +PL  AA  GH +    LL   G   +
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRA-GVSRD 61

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
                 +  LH AA +GH ++V+ LL    D       D    TALH A +    EVV+L
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVEL 118

Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
           L++  A +     KF  TA  ++      ++  E+L
Sbjct: 119 LIKYGADV-HTQSKFCKTAFDISIDNGNEDLA-EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (277), Expect = 1e-28
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 177 TPLVSAATRGHTAVVNELLS------KDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
             L+ AA  G    V  L++       D          G + LH AA+ GH    + LL 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 290
                  R  K  +T LHMA       +V++LL+  A +    D    TALH AT     
Sbjct: 56  AGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQ 113

Query: 291 EIVTELLSLPDTNVNALTRDHKTALDIA 318
           E+V  L+     +V+  ++  KTA DI+
Sbjct: 114 EVVELLIKY-GADVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.5 bits (239), Expect = 2e-23
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
           +    L  AAR G  D V+ L++        TD  G + LH+A +       ++LL A  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           +      K   T LH+A  +    IV  LL     +VNA      TAL  A
Sbjct: 59  SR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWA 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 80.1 bits (199), Expect = 5e-18
 Identities = 39/190 (20%), Positives = 62/190 (32%), Gaps = 76/190 (40%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           + LHLAAQ G     +  +  G+                         +           
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVS-----------------------RDA---------- 62

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             + +    PLH+AA +GH  IV+VLL H                         A VN  
Sbjct: 63  --RTKVDRTPLHMAASEGHANIVEVLLKHG------------------------ADVNA- 95

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVK 252
             KD             ALH+A    H +VV+ L+    D        K  +TA  +++ 
Sbjct: 96  --KD--------MLKMTALHWATEHNHQEVVELLIKYGADVH---TQSKFCKTAFDISID 142

Query: 253 GQSCEVVKLL 262
             + ++ ++L
Sbjct: 143 NGNEDLAEIL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  114 bits (287), Expect = 3e-29
 Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 18/191 (9%)

Query: 137 KNRSGFDP---LHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
             R+  +P   L  AA+ G   +VQ  +    DPS     G    T L +A    + ++V
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG---ITALHNAICGANYSIV 70

Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
           + L++  G  +    S+G   LH AA      +  AL+     +   T   G TA     
Sbjct: 71  DFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

Query: 252 KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309
             +    +    L + + ++  L +     AL   +     E   EL      +V  L R
Sbjct: 130 PYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSA----EFGDELSFREGESVTVLRR 184

Query: 310 DH--KTALDIA 318
           D   +T    A
Sbjct: 185 DGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  109 bits (275), Expect = 2e-27
 Identities = 38/226 (16%), Positives = 68/226 (30%), Gaps = 44/226 (19%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
             L  AA  G+L  V+Q +              +             ++      +EG+T
Sbjct: 23  VLLLDAALTGELEVVQQAVK----------EMND------------PSQ----PNEEGIT 56

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
                    LH A    +++IV  L+    + +   + G    TPL  AA+   T +   
Sbjct: 57  --------ALHNAICGANYSIVDFLITAGANVNSPDSHG---WTPLHCAASCNDTVICMA 105

Query: 194 LLSKDGGLLEISRSNGKNALHFAA--RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
           L+     +   + S+G  A       R+G+ D    L   +  +    +     AL    
Sbjct: 106 LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYS 164

Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
                + +          V+  D    T    A    +   V    
Sbjct: 165 AEFG-DELSFREGES-VTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 225 VKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 282
           ++++L K   P+ ARR        L  A      EVV+  ++        P++ G TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALH 59

Query: 283 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            A       IV  L++    NVN+      T L  A
Sbjct: 60  NAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCA 94

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 10/144 (6%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDT--EVAEIRSSVVNELLKY--ST 130
           T LH AA   D       + +G          G    T  E  +       +   Y    
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDG---ATAFEKCDPYREGYADCATYLADV 145

Query: 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
           ++ +   N      L   +       +        ++ +  G    T    AA  G    
Sbjct: 146 EQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLRRDG-PEETDWWWAALHGQEGY 203

Query: 191 VNELLSKDGGLLEISRSNGKNALH 214
           V          ++  RS  K+  H
Sbjct: 204 VPRNYFGLFPRVKPQRSKVKHHHH 227

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  111 bits (280), Expect = 6e-29
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
                 D L  AA +G    V+ LL+   +P+   + G     P+      G   V   L
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG---RRPIQVMM-MGSARVAELL 63

Query: 195 LSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAV 251
           L   G     +        +H AAR+G +D +  L        +    D  G+  + +A 
Sbjct: 64  LLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR---DAWGRLPVDLAE 119

Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
           +    +V + L  A           G+    +   +  ++I 
Sbjct: 120 ELGHRDVARYLRAAAG------GTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (274), Expect = 4e-28
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 234
             L +AA RG    V  LL   G       S G+  +      G   V + LL    +P 
Sbjct: 14  DWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPN 71

Query: 235 LARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
            A   D    T  +H A +    + + +L  A A  + + D +G   + +A      ++ 
Sbjct: 72  CA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVA 127

Query: 294 TELLSLPDTNVNALTRDHKTAL----DIAE 319
             L +               A     DI +
Sbjct: 128 RYLRAA-AGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 93.3 bits (233), Expect = 1e-22
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 208 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
              + L  AA +G V+ V+ALL    +P      +  G+  + + + G S  V +LLL  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMMG-SARVAELLLLH 66

Query: 266 DAAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            A      D    T  +H A R+   + +  L       ++      +  +D+A
Sbjct: 67  GAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 93.3 bits (233), Expect = 2e-22
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 42/185 (22%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
              L  AA RG +  V+ +L            GA              N           
Sbjct: 13  ADWLATAAARGRVEEVRALL----EA------GAN------------PNA---------- 40

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
              N  G  P+ +    G   + ++LL H    +     +   P+  AA  G    +  L
Sbjct: 41  --PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
               G  L++  + G+  +  A   GH DV + L +           +G     +     
Sbjct: 98  HRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEG 150

Query: 255 SCEVV 259
             ++ 
Sbjct: 151 PSDIP 155

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  111 bits (280), Expect = 7e-29
 Identities = 49/206 (23%), Positives = 68/206 (33%), Gaps = 46/206 (22%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            N      L  AA  G    V+ L                           +    +   
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV-----------------------QSVNCRD--- 37

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQ 254
            +G             LHFAA    V VV+ LL    D       DK G   LH A    
Sbjct: 38  IEG--------RQSTPLHFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYG 86

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
             EV +LL++  A + +  D +  T LH A  K + EI   LL     +     RD  T 
Sbjct: 87  HYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTP 144

Query: 315 LDIAEGLPSSEEASEIKDCLARCGAV 340
           LD+       +  ++I+D L    A+
Sbjct: 145 LDLV-----KDGDTDIQDLLRGDAAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.5 bits (231), Expect = 4e-22
 Identities = 44/203 (21%), Positives = 72/203 (35%), Gaps = 57/203 (28%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           D +L  AA+ GD+  VK++           +                  +          
Sbjct: 9   DRQLLEAAKAGDVETVKKLC---------TVQSVN------------CRD---------- 37

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNA------TPLVSAATRG 186
                    PLH AA     ++V+ LL H  D          +A       PL +A + G
Sbjct: 38  --IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---------HAKDKGGLVPLHNACSYG 86

Query: 187 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQ 244
           H  V   L+   G ++ ++       LH AA +G  ++ K LL    DP    + ++ G 
Sbjct: 87  HYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGN 142

Query: 245 TALHMAVKGQSCEVVKLLLEADA 267
           T L +   G + ++  LL    A
Sbjct: 143 TPLDLVKDGDT-DIQDLLRGDAA 164

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  103 bits (260), Expect = 2e-26
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
              S    L  AA +G    V+ LL+   DP+     G     P+      G   V   L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG---RRPIQVMM-MGSAQVAELL 63

Query: 195 LSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
           L   G     +        +H AAR+G +D +  L     +L    D  G+  + +A + 
Sbjct: 64  LLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQ 121

Query: 254 QSCEVVKLLLEADA 267
              ++ + L  A  
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 99.4 bits (249), Expect = 6e-25
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 234
             L +AA RG    V +LL   G         G+  +      G   V + LL    +P 
Sbjct: 14  AGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

Query: 235 LARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
            A   D    T  +H A +    + + +L  A A  + + D +G   + +A  +   +I 
Sbjct: 72  CA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIA 127

Query: 294 TELLS 298
             L +
Sbjct: 128 RYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 95.2 bits (238), Expect = 2e-23
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 207 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 266
            +    L  AA +G V+ V+ LL          ++ G+  + + + G S +V +LLL   
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMG-SAQVAELLLLHG 67

Query: 267 AAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           A      D    T  +H A R+   + +  L       ++      +  +D+A
Sbjct: 68  AE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 36/163 (22%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKY 128
           + G  +D  L  AA RG +  V+Q+L            GA+             N     
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLL----EA------GAD------------PNA---- 40

Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
                    NR G  P+ +    G   + ++LL H    +     +   P+  AA  G  
Sbjct: 41  --------LNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91

Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
             +  L    G  L++  + G+  +  A  QGH D+ + L + 
Sbjct: 92  DTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.3 bits (137), Expect = 8e-10
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
                  L  A      E V+ LLEA A      ++FG   + V       ++   LL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLH 66

Query: 300 PDTNVNALTRDHKT-ALDIA 318
                N       T  +  A
Sbjct: 67  -GAEPNCADPATLTRPVHDA 85

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  103 bits (259), Expect = 2e-26
 Identities = 55/122 (45%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           TPL  AA  GH  VV  LL   G  +     NG+  LH AAR GH++VVK LL     + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
            + DK G+T LH+A +    EVVKLLLEA A +    DK G T LH+A R    E+V  L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 297 LS 298
           L 
Sbjct: 121 LE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (257), Expect = 4e-26
 Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 7/130 (5%)

Query: 140 SGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
           +G  PLH+AA  GH  +V++LL+   D +     G    TPL  AA  GH  VV  LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---RTPLHLAARNGHLEVVKLLLEA 57

Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
            G  +     NG+  LH AAR GH++VVK LL     +  + DK G+T LH+A +    E
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLE 115

Query: 258 VVKLLLEADA 267
           VVKLLLEA A
Sbjct: 116 VVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.5 bits (239), Expect = 1e-23
 Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 7/113 (6%)

Query: 208 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
           NG+  LH AAR GH++VVK LL    D       DK G+T LH+A +    EVVKLLLEA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 266 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
            A +    DK G T LH+A R    E+V  LL     +VNA  ++ +T L +A
Sbjct: 58  GADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 69/156 (44%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           T LHLAA+ G L  VK     ++       +GA+            VN            
Sbjct: 37  TPLHLAARNGHLEVVK---LLLE-------AGAD------------VNA----------- 63

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
            K+++G  PLH+AA  GH  +V++LL+                          A VN   
Sbjct: 64  -KDKNGRTPLHLAARNGHLEVVKLLLEAG------------------------ADVNA-- 96

Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
            KD         NG+  LH AAR GH++VVK LL  
Sbjct: 97  -KD--------KNGRTPLHLAARNGHLEVVKLLLEA 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (258), Expect = 3e-26
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
            N  G   LHIA+++G    V+ LL +  DP++    G    TPL  A   GH  VV  L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVVELL 62

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVK 252
           L     L+  +     + LH AA+ GHVD+VK LLS           +  G   +     
Sbjct: 63  LQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGLRPVDYTDD 118

Query: 253 GQSCEVVKLLLEADA 267
                ++ L  + ++
Sbjct: 119 ESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 99.4 bits (249), Expect = 6e-25
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 208 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
            G+  LH A+ +G +  V+ LL    DP      D  G T LH A      +VV+LLL+ 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 266 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 325
            A  V       ++ LH A +    +IV  LLS    + NA+       +D        E
Sbjct: 66  KAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYT----DDE 119

Query: 326 EASEIKDCLARCGAVRAN 343
               +     +  +  A+
Sbjct: 120 SMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 274 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           +  G T LH+A+ K     V  LL    ++ N       T L  A
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEA 50

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (255), Expect = 6e-26
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 172 GPSNA---TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
           GP  +      + A   G    V + ++K G  +  +   G+  LH+AA  G +++++ L
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 229 LSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 286
           L K  D       DK   T L  AV       VKLLL   A   +     G TA      
Sbjct: 60  LLKGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDN 115

Query: 287 KKRTEIV 293
           +    ++
Sbjct: 116 QAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 96.7 bits (242), Expect = 3e-24
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 207 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 266
           S       +A + G +D VK  ++K   +  RT + G+  LH A      E+++ LL   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 267 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           A I   PDK   T L  A  +     V  LLS    +      D  TA +  
Sbjct: 64  ADINA-PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 29/135 (21%), Positives = 40/135 (29%), Gaps = 23/135 (17%)

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNA------TPLVSAATRGH 187
                       A   G    V+  +    D          N        PL  AA  G 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV---------NRTLEGGRKPLHYAADCGQ 52

Query: 188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQT 245
             ++  LL K G  +     +    L  A  +GHV  VK LLSK  D  +       G T
Sbjct: 53  LEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLT 108

Query: 246 ALHMAVKGQSCEVVK 260
           A           +++
Sbjct: 109 AFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 40/160 (25%), Positives = 54/160 (33%), Gaps = 52/160 (32%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           D E   A + GDL  VK  +    ++      G +            VN           
Sbjct: 8   DKEFMWALKNGDLDEVKDYV----AK------GED------------VNR---------- 35

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNA------TPLVSAATRG 186
                 G  PLH AA  G   I++ LL    D          NA      TPL+SA   G
Sbjct: 36  --TLEGGRKPLHYAADCGQLEILEFLLLKGADI---------NAPDKHHITPLLSAVYEG 84

Query: 187 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 226
           H + V  LLSK G    +   +G  A      Q    +++
Sbjct: 85  HVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 62.0 bits (152), Expect = 6e-12
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
                       A+K    + VK  +     +     + G   LH A    + EI+  LL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLL 60

Query: 298 SLPDTNVNALTRDHKTALDIA 318
                ++NA  + H T L  A
Sbjct: 61  LK-GADINAPDKHHITPLLSA 80

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  101 bits (253), Expect = 5e-25
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 20/176 (11%)

Query: 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA--TPLVSAATRGHTAVVNELLS 196
            S +  +  AA+ G +     L +      ++   SN     L +        +   L++
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDV------VKALLSK--DPQLARRTDKKGQTALH 248
           K G  ++     G        + G  D+       K  L K  D        K  +  + 
Sbjct: 64  K-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI---TALYKPYKIVVF 119

Query: 249 MAVKGQSCE------VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
             +     +      + KL+       +++ DK+G TAL    R ++   +  +  
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.8 bits (231), Expect = 5e-22
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 34/189 (17%)

Query: 174 SNA----TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-----ALHFAARQGHVDV 224
           SNA      + +AA  G      EL  K     E   S  K+      L     +    +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 225 VKALLSK--DPQLARRTDKKGQTALHMAVKG------QSCEVVKLLLEADAAIVMLPDKF 276
              L++K  D +      K+G T      +G       + E+ K+ LE  A I     K 
Sbjct: 58  SMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKP 113

Query: 277 GNTALHVATRK------KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 330
               +            +   +   + S     +    +   TAL+         +    
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV----KRCQKPIA 169

Query: 331 KDCLARCGA 339
              +     
Sbjct: 170 LKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 23/181 (12%), Positives = 45/181 (24%), Gaps = 37/181 (20%)

Query: 76  TELHLAAQRGDLGAVKQIL-YGIDSQMVGN--------LSGAEFDTEVAEIRSSVVNELL 126
             +  AA  G      ++   G + +            L          E R  +   L+
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNN-----DEARYKISMFLI 62

Query: 127 KYSTKEG--LTRKNRSGFDPLHIAAVQGHH------AIVQVLLDH--DPSLSQTTGPSNA 176
                 G  +  + + G          G +       + ++ L+   D +          
Sbjct: 63  NK----GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY---K 115

Query: 177 TPLVSAATRGH------TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
             +                +   + S+ G  L I    G  AL F  R      +K +  
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

Query: 231 K 231
            
Sbjct: 176 Y 176

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (252), Expect = 2e-24
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  LL 
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLV 94

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    + 
Sbjct: 95  K-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNL 152

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD 316
           ++V +LL   A+   + D  GNT LH+A  ++R E    L++    ++    ++ KT L 
Sbjct: 153 KMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQ 210

Query: 317 IAEG 320
           +A+G
Sbjct: 211 VAKG 214

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.9 bits (236), Expect = 2e-22
 Identities = 55/224 (24%), Positives = 87/224 (38%), Gaps = 42/224 (18%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LH A   G    V+  +  G+                        VN+          
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVP-----------------------VND---------- 68

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             K+ +G+ PLHIAA  G   IV+ LL     ++     +  TPL  AA++    +   L
Sbjct: 69  --KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVML 125

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
           L   G   +        A+H AA +G++ +V  LL        + D +G T LH+A   +
Sbjct: 126 LEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEE 183

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
             E  K L+   A+I  + +K   T L VA       ++ + L+
Sbjct: 184 RVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGL--GLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.2 bits (221), Expect = 3e-20
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 46/205 (22%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
              S     ++A       + + +L                           ++      
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADK------------------------SLATR--- 35

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQ 254
            D         + + ALH+A   GH ++V+ LL            D  G + LH+A    
Sbjct: 36  TD--------QDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAG 84

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 314
             E+VK LL   A +    ++ G T LH A  K R EI   LL     N +A      TA
Sbjct: 85  XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATA 142

Query: 315 LDIAEGLPSSEEASEIKDCLARCGA 339
           +  A    +++   ++   L    A
Sbjct: 143 MHRA----AAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 39/194 (20%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           + LH+AA  G    VK +L                                       + 
Sbjct: 75  SPLHIAASAGXDEIVKALL----------------------------------VKGAHVN 100

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
             N++G  PLH AA +  H I  +LL+   +        +AT +  AA +G+  +V+ LL
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILL 159

Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
                   I  + G   LH A  +  V+  K L+++   +    +K+ +T L +A  G  
Sbjct: 160 FY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE-NKEEKTPLQVAKGGL- 216

Query: 256 CEVVKLLLEADAAI 269
             ++   L      
Sbjct: 217 -GLILKRLAEGEEA 229

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 96.3 bits (241), Expect = 7e-24
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            L  AA  G    V++L+ +                         A VN    KD     
Sbjct: 17  KLLEAARAGQDDEVRILMANG------------------------ADVNA---KD----- 44

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
                G   L+ A   GH+++V+ LL     +    D  G T LH+A      E+ ++LL
Sbjct: 45  ---EYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLL 100

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           +  A +    DKFG TA  ++      ++   L  
Sbjct: 101 KHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.5 bits (226), Expect = 7e-22
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 203 EISRSNGKN---ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 259
                +G +    L  AAR G  D V+ L++    +  + D+ G T L++A      E+V
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIV 63

Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           ++LL+  A +    D  G T LH+A      EI  E+L     +VNA  +  KTA DI+
Sbjct: 64  EVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.4 bits (197), Expect = 7e-18
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 76/194 (39%)

Query: 76  TELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
            +L  AA+ G    V+  +  G D                       VN           
Sbjct: 16  KKLLEAARAGQDDEVRILMANGAD-----------------------VNA---------- 42

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             K+  G  PL++A   GH  IV+VLL +                         A VN  
Sbjct: 43  --KDEYGLTPLYLATAHGHLEIVEVLLKNG------------------------ADVNA- 75

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVK 252
              D        + G   LH AA  GH+++ + LL    D       DK G+TA  +++ 
Sbjct: 76  --VD--------AIGFTPLHLAAFIGHLEIAEVLLKHGADV---NAQDKFGKTAFDISIG 122

Query: 253 GQSCEVVKLLLEAD 266
             + ++ ++L + +
Sbjct: 123 NGNEDLAEILQKLN 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 92.8 bits (232), Expect = 8e-23
 Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
           +G   LH AA+ GH + VK LLSK   +     K G T LH+A K    E+VKLLL   A
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
            +     K GNT  H+A +    EIV  L +    +VNA +       
Sbjct: 67  DVNA-RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.1 bits (225), Expect = 6e-22
 Identities = 40/146 (27%), Positives = 54/146 (36%), Gaps = 37/146 (25%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
            ++ G  PLH AA  GH   V+ LL                           A VN    
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKG------------------------ADVNA--- 37

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
           +          +G   LH AA+ GH ++VK LL+K   +  R  K G T  H+A K    
Sbjct: 38  RS--------KDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLAKKNGHH 88

Query: 257 EVVKLLLEADAAIVMLPDKFGNTALH 282
           E+VKLL    A +        +   H
Sbjct: 89  EIVKLLDAKGADVNA-RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.7 bits (172), Expect = 8e-15
 Identities = 41/174 (23%), Positives = 56/174 (32%), Gaps = 72/174 (41%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLS-GAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LH AA+ G    VK  L          LS GA+            VN           
Sbjct: 11  TPLHNAAKNGHAEEVK-KL----------LSKGAD------------VNA---------- 37

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             +++ G  PLH+AA  GH  IV++LL                           A VN  
Sbjct: 38  --RSKDGNTPLHLAAKNGHAEIVKLLLAKG------------------------ADVNA- 70

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 248
             +          +G    H A + GH ++VK L +K   +  R         H
Sbjct: 71  --RS--------KDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 7e-14
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
            K G T LH A K    E VK LL   A +     K GNT LH+A +    EIV  LL+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 300 PDTNVNALTRDHKTALDIA 318
              +VNA ++D  T   +A
Sbjct: 65  -GADVNARSKDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 34/91 (37%)

Query: 73  HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
             +T LHLAA+ G    VK +L    ++      GA+            VN         
Sbjct: 41  DGNTPLHLAAKNGHAEIVKLLL----AK------GAD------------VNA-------- 70

Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
               +++ G  P H+A   GHH IV++L   
Sbjct: 71  ----RSKDGNTPEHLAKKNGHHEIVKLLDAK 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 87.6 bits (218), Expect = 4e-21
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 182 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 241
            ++  H    + L+ + G  +    S+    L  AAR G  D V+ L++    +    DK
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
            G T LH+A +    EVVKLLLEA A +    DKFG TA  ++      ++   L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.1 bits (201), Expect = 8e-19
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNA---TPLVSAATRGHTAVVNELLSKDGGLLEI 204
            +   HH     L+     +        +     L+ AA  G    V  L++  G  +  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM-------GSDLGKKLLEAARAGQDDEVRILMAN-GADVAA 52

Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
              NG   LH AAR GH++VVK LL     +  + DK G+TA  +++   + ++ ++L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 75.3 bits (186), Expect = 8e-17
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
            +   H      L+ +   +           L  A +    + V++L+   A +    DK
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDK 55

Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK 331
            G+T LH+A R    E+V  LL     +V A  +  KTA DI+    + + A  ++
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 39/121 (32%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
            +L  AA+ G    V+ ++    +       GA+            V             
Sbjct: 26  KKLLEAARAGQDDEVRILM----AN------GAD------------VAA----------- 52

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
            K+++G  PLH+AA  GH  +V++LL+   D       G    T    +   G+  +   
Sbjct: 53  -KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG---KTAFDISIDNGNEDLAEI 108

Query: 194 L 194
           L
Sbjct: 109 L 109

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.8 bits (230), Expect = 7e-21
 Identities = 32/194 (16%), Positives = 63/194 (32%), Gaps = 23/194 (11%)

Query: 144 PLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKD 198
           PLH      +  +V+ L+ H  +       G    + LV A    +   +     LL   
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMG---ESCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 199 GGLLEISRSNGKNALHFAAR-----------QGHVDVVKALLSKDPQLARRTDKKGQTAL 247
              L +  S  +  LH               + ++D++   + K      ++    + + 
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 248 HMAVKGQSCEVVKLLLEADAAIVML---PDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304
                G+  + +   L+    I  +    D  G+T L++A R     IV  LL     + 
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADP 309

Query: 305 NALTRDHKTALDIA 318
               +     +D  
Sbjct: 310 FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.5 bits (198), Expect = 1e-16
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 54/230 (23%)

Query: 73  HNDTELHLAAQRGDLGAVKQ-ILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK 131
           H +T LH      +L  VK  + +G +                                 
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSN-----------------------RL-------- 158

Query: 132 EGLTRKNRSGFDPLHIAAVQGH---HAIVQVLLDHDPSLSQTTGPSNATPL--------- 179
                 +  G   L  A    +       + LLD+           N T L         
Sbjct: 159 ----YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 214

Query: 180 --VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
              SAA + +  ++   + K       S +N K +          D +   L     +A 
Sbjct: 215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274

Query: 238 R---TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
                D  G T L++A +  +  +V  LL+  A    + +K G   +   
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.8 bits (186), Expect = 4e-15
 Identities = 33/277 (11%), Positives = 70/277 (25%), Gaps = 21/277 (7%)

Query: 131 KEGLTRKNRS-GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA----------TPL 179
             G    N +   D      +   H +    L     + +                   L
Sbjct: 8   PSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFL 67

Query: 180 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT 239
                     +   L +          S+ +   H +      +V  A  +    L    
Sbjct: 68  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTEL 296
           D+ G T LH      + E+VK L++  +   +  D  G + L  A +      +     L
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 297 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV 356
           L      +      ++T L            S               +         + +
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN------RPI 240

Query: 357 TQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIN 393
                +  ++        K+    + +L+ +    +N
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.5 bits (213), Expect = 1e-20
 Identities = 44/93 (47%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 208 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
           NG+  LH AAR GH++VVK LL    D       DK G+T LH+A +    EVVKLLLEA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 266 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            A +    DK G T LH+A R    E+V  LL 
Sbjct: 58  GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.2 bits (207), Expect = 1e-19
 Identities = 44/93 (47%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 234
           TPL  AA  GH  VV  LL   G  +     NG+  LH AAR GH++VVK LL    D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
                DK G+T LH+A +    EVVKLLLEA A
Sbjct: 63  ---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 40/100 (40%), Positives = 50/100 (50%), Gaps = 18/100 (18%)

Query: 140 SGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNA------TPLVSAATRGHTAVV 191
           +G  PLH+AA  GH  +V++LL+   D          NA      TPL  AA  GH  VV
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---------NAKDKNGRTPLHLAARNGHLEVV 51

Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
             LL   G  +     NG+  LH AAR GH++VVK LL  
Sbjct: 52  KLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 34/88 (38%)

Query: 76  TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
           T LHLAA+ G L  VK +L            GA+            VN            
Sbjct: 37  TPLHLAARNGHLEVVKLLL----EA------GAD------------VNA----------- 63

Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
            K+++G  PLH+AA  GH  +V++LL+ 
Sbjct: 64  -KDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 205 SRSNGKNALHFAARQGHVDVVKA--LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
                + ALH A R      +     L ++     +   KG TALH      + E +KLL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
           L   A+I  + ++ G T L +A R K       L   
Sbjct: 225 LRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 127 KYSTKEGLTRKNRSGFDPLH---IAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TP 178
           KY  +    +K+      LH    A        +         L++    +N      T 
Sbjct: 113 KYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETA 172

Query: 179 LVSAATRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 234
           L  A        ++  + L ++ G L+     G  ALH+     + + +K LL      +
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
           +    ++ G+T L +A + +     +LL +A
Sbjct: 233 I---ANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 237 RRTDKKGQTALHMAVKG--QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294
               +  +TALH+AV+   ++   +   L  ++  +      G+TALH        E + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL- 221

Query: 295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQP 348
           +LL     ++       +T LDIA+      +    ++ L +     +   N  
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQA---LSGRFNSH 268

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
              +        +   L H   ++   G   NATPL+ A          E L ++G  + 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVN 262

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
            + S G+  LH A   GH  +    L +   L  R D +G+  L +A++  + ++V LL 
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIVTLLR 321

Query: 264 EAD 266
            A 
Sbjct: 322 LAK 324

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
           +    L  A     +   + LL     + +  D  G+  LH A       +  L L+  A
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGA 292

Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELL 297
             +   D  G   L +A      +IVT L 
Sbjct: 293 D-LGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 9/215 (4%)

Query: 29  ESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLG 88
                    P       P   +      +    +       +          +     L 
Sbjct: 155 RGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLP 214

Query: 89  AVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVN--ELLKYSTKEGLTRKNRSGFDPL 145
            +   L +G D   V            A   +S++    LL+      + + + +G  PL
Sbjct: 215 TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN--VNQADSAGRGPL 272

Query: 146 HIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS 205
           H A + GH  +  + L     L          PL  A    +  +V  L        E +
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARD-SEGRDPLTIAMETANADIVTLLRLAKMREAEAA 331

Query: 206 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD 240
           +    +  +        D          +L+RR+ 
Sbjct: 332 QGQAGDETY---LDIFRDFSLMASDDPEKLSRRSH 363

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 127 KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TPLVS 181
           KY       R+       L  A        V     +     Q     +A       L  
Sbjct: 138 KYVEHR-FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHL 196

Query: 182 AATRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLAR 237
           A    + A +   + + ++GG L+   ++G  ALH+AA     D +K LL          
Sbjct: 197 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-- 254

Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
             ++ G+TAL +A K    E  +LL +A A
Sbjct: 255 -VNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 205 SRSNGKNALHFAARQGHVD--VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
           +++  +  LH A +  +     +   + ++          G TALH A      + +KLL
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 303
           L+  A +  + ++ G TAL +A +K   E   ELL      
Sbjct: 246 LKGRALVGTV-NEAGETALDIARKKHHKECE-ELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 233 PQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 289
           P          +  LH+AV      S  +V  ++  +   +      GNTALH A    +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQ 238

Query: 290 TEIVTELLSLPDTNVNALTRDHKTALDIA 318
            + + +LL      V  +    +TALDIA
Sbjct: 239 PDCL-KLLLKGRALVGTVNEAGETALDIA 266

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 46/306 (15%), Positives = 98/306 (32%), Gaps = 58/306 (18%)

Query: 115 AEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS 174
            E R   +   +    ++ L   N+  F   +++ +Q +  + Q LL     L     P+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALL----ELR----PA 150

Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
               +      G T V  ++       ++         L+      + +  + +L    +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNL----KNCNSPETVLEMLQK 204

Query: 235 LARRTDKKG-QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL----HVATRKK- 288
           L  + D      + H +        ++  L       +L  K     L    +V   K  
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQNAKAW 259

Query: 289 -------RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 341
                  +  + T    + D  ++A T  H +    +  L + +E   +   L +    R
Sbjct: 260 NAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTL-TPDEVKSL---LLKYLDCR 314

Query: 342 ANELNQPRDELRKT----VTQI---KKDVHTQLEQTRRTNKN-VHNISK---------EL 384
             +L  PR E+  T    ++ I    +D     +  +  N + +  I +         E 
Sbjct: 315 PQDL--PR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 385 RKLHRE 390
           RK+   
Sbjct: 372 RKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 52/331 (15%), Positives = 94/331 (28%), Gaps = 99/331 (29%)

Query: 201 LLEISRSNGKNALH-FAARQGHVDVVKALLSKD-PQLARRTDKKGQTALHMAVKGQSCEV 258
           L     S  +  +  F         V+ +L  +   L         + +    +  S   
Sbjct: 67  LFWTLLSKQEEMVQKF---------VEEVLRINYKFLM--------SPIKTEQRQPSMMT 109

Query: 259 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTRDH------ 311
              + + D  +      F     +V+  +   ++   LL L P  NV  +          
Sbjct: 110 RMYIEQRDR-LYNDNQVF--AKYNVSRLQPYLKLRQALLELRPAKNV-LI---DGVLGSG 162

Query: 312 KTALDIAEGLPSSEEASEIKDC------LARCGAVRANELNQPRDELR---KTVTQIKKD 362
           KT +   +    S +     D       L  C        N P   L    K + QI  +
Sbjct: 163 KTWV-ALDVC-LSYKVQCKMDFKIFWLNLKNC--------NSPETVLEMLQKLLYQIDPN 212

Query: 363 VHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDD 422
             ++ + +      +H+I  ELR+L +       N + V+                   +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVL------------------LN 252

Query: 423 DNGKAVVVRRASF----KIFFIFNAIALFTSL-AVVVVQITLV---RGETKAEKRVVEVI 474
                      +F    KI        +   L A     I+L       T  E +   ++
Sbjct: 253 VQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLL 307

Query: 475 NKLMWL--------ASVCT----SVAFIASS 493
            K  +L          V T     ++ IA S
Sbjct: 308 LK--YLDCRPQDLPREVLTTNPRRLSIIAES 336

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 12/40 (30%)

Query: 14 EKGIISPQLSQKSIGESSLTPSPSPSPSSATAPALVLSNS 53
          EK     Q + K + ++SL      +  SA  PAL +  +
Sbjct: 18 EK-----Q-ALKKL-QASLKLY---ADDSA--PALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	568
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.64

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-40  Score=349.00  Aligned_cols=291  Identities=26%  Similarity=0.344  Sum_probs=156.4

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPL  145 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpL  145 (568)
                      .+..+..|.||||+|+..|+.+++++|++ +.+.+..+..+.++++.|+..++.++++.|++.+  .+.+..+..|.|||
T Consensus        73 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L  150 (437)
T 1n11_A           73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE--ASQACMTKKGFTPL  150 (437)
T ss_dssp             SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHH
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCcCCCCCCCCHH
Confidence            34455666666666666666666666665 3444444445555666666666666666665432  23344445555555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---------------------------
Q 008358          146 HIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD---------------------------  198 (568)
Q Consensus       146 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~---------------------------  198 (568)
                      |+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++++                           
T Consensus       151 ~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          151 HVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            5555555555555555555554 344445555555555555555555555442                           


Q ss_pred             -----CCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCC
Q 008358          199 -----GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLP  273 (568)
Q Consensus       199 -----~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~  273 (568)
                           +.+++..+..|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+..|+.+++++|+++|++ ++.+
T Consensus       230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~  307 (437)
T 1n11_A          230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDAT  307 (437)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCC
Confidence                 2233444445555555555555555555555555444 44455555555555555555555555555555 4555


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHH
Q 008358          274 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR  353 (568)
Q Consensus       274 d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~  353 (568)
                      |..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..++    .+++++|+++|+..+.....+.+++.
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~ga~~~~~~~~g~t~l~  382 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGH----TDIVTLLLKNGASPNEVSSDGTTPLA  382 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCCh----HHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            5555555555555555555555555 455555555555555555555443    24555555555555555555555555


Q ss_pred             HHHHhhhhhhhhhH
Q 008358          354 KTVTQIKKDVHTQL  367 (568)
Q Consensus       354 ~~~~~~~~~~~~~l  367 (568)
                      .+......++.+.+
T Consensus       383 ~A~~~g~~~~~~~l  396 (437)
T 1n11_A          383 IAKRLGYISVTDVL  396 (437)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCcHHHHHHH
Confidence            55444444444333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.9e-40  Score=348.29  Aligned_cols=293  Identities=27%  Similarity=0.314  Sum_probs=256.1

Q ss_pred             HhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcH
Q 008358           66 VKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDP  144 (568)
Q Consensus        66 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~Tp  144 (568)
                      ..+..++.|.||||.||..|+.++|++|++ +.+.+..+..+.++++.|+..|+.++++.|++.  +.+++.+|..|+||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~   83 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTP   83 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCH
Confidence            345568899999999999999999999997 455666667788999999999999999999976  45688899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHH
Q 008358          145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV  224 (568)
Q Consensus       145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  224 (568)
                      ||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.++++.|+++ +...+..+..|.||||+|+..|+.++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999998 67888999999999999999999999998 45567778899999999999999999


Q ss_pred             HHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358          225 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  304 (568)
Q Consensus       225 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  304 (568)
                      +++|+++++++ +..+..|.||||+|+..|+.+++++|+++|++ ++..+.+|.||||+|+..|+.+++++|++ .|+++
T Consensus       162 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~  238 (437)
T 1n11_A          162 AELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSA  238 (437)
T ss_dssp             HHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred             HHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence            99999999987 77889999999999999999999999999998 78889999999999999999999999999 89999


Q ss_pred             ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358          305 NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       305 ~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                      +..|..|.||||+|+..++.    +++++|++.|+..+.....+.+++..++.....++.+.|-+
T Consensus       239 ~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          239 NAESVQGVTPLHLAAQEGHA----EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             TCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCH----HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999987654    78889999999888777888889998888777776665543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.7e-40  Score=323.97  Aligned_cols=262  Identities=26%  Similarity=0.347  Sum_probs=236.6

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhc-CCcccc-ccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           73 HNDTELHLAAQRGDLGAVKQILYG-IDSQMV-GNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      +|.||||.|++.|+.+++++|++. .+.+.. +..+.++++.|+..++.++++.|++.  +.+++.+|..|.||||+|+.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHH
Confidence            466999999999999999999974 444444 45567899999999999999999976  56678889999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc----------CcCCChHHHHHHHcC
Q 008358          151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS----------RSNGKNALHFAARQG  220 (568)
Q Consensus       151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g  220 (568)
                      .|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++ .+++..          +..|.||||.|+..|
T Consensus        82 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            99999999999999998 678899999999999999999999999984 445554          778999999999999


Q ss_pred             CHHHHHHHHcC-CCccccccCCCCCCHHHHHHhCCC----HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHH
Q 008358          221 HVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE  295 (568)
Q Consensus       221 ~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~  295 (568)
                      +.+++++|++. +.++ +..|..|+||||.|+..++    .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++
T Consensus       160 ~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          160 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             CHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            99999999998 7766 7889999999999999999    9999999999999 88999999999999999999999999


Q ss_pred             HhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 008358          296 LLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE  344 (568)
Q Consensus       296 Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  344 (568)
                      |++..|++++.+|.+|+||||+|+..++.    +++++|+++|+..+..
T Consensus       238 Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~----~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          238 LLEQEHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCCS
T ss_pred             HHhccCCCccccCCCCCcHHHHHHHcCcH----HHHHHHHHcCCCCCcc
Confidence            99978999999999999999999997654    7899999999986543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.9e-39  Score=327.39  Aligned_cols=281  Identities=25%  Similarity=0.307  Sum_probs=171.1

Q ss_pred             CChHhHHHHHcCCHHHHHHHHh-cCCccccccC-CCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           74 NDTELHLAAQRGDLGAVKQILY-GIDSQMVGNL-SGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~-~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      |.|+||.||+.|++++|+.||+ +.+.+..+.. +.+|||+|+..++.++|+.||+.+  ++++.++..+.++++.++..
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--CchhhhccCCCchhHHHHhc
Confidence            3478888888888888888886 4455544443 567888888888888888888653  44555566666666666666


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----------ccCcCCChHHHHHHHcCC
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE----------ISRSNGKNALHFAARQGH  221 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~----------~~d~~g~tpLh~A~~~g~  221 (568)
                      ++..++..++..++++ +..|..|.||||+|+..|+.+++++|++++. +++          ..+..|.||||+|+..|+
T Consensus       103 ~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga-~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGA-NVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             TCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             ccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCC-CcchhhccccccccccCCCCcHHHHHHHCCC
Confidence            6666666666666665 4556666666666666666666666665532 221          223456666666666666


Q ss_pred             HHHHHHHHc-CCCccccccCCCCCCHHHHHHhCCC----HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          222 VDVVKALLS-KDPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       222 ~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      .+++++|++ .|.++ +..|..|+|+||.++..+.    .+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|
T Consensus       181 ~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~L  258 (337)
T 4g8k_A          181 VEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRL  258 (337)
T ss_dssp             HHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence            666666664 34444 5556666666665553222    2455666666666 556666666666666666666666666


Q ss_pred             hcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358          297 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       297 l~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                      ++..|+++|.+|.+|+||||+|+..++.    +++++|+++|+..+...     ++..++.....++.+.|-+
T Consensus       259 l~~~~~~vn~~d~~G~TpL~~A~~~g~~----~iv~~Ll~~GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~  322 (337)
T 4g8k_A          259 LEQEHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLS  322 (337)
T ss_dssp             HTSTTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHTTSCSSTTCC-----HHHHHHHTTCHHHHHHHHH
T ss_pred             HHhcCCcccCcCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCCC-----HHHHHHHcCCHHHHHHHHH
Confidence            6545666666666666666666665442    55566666666554332     4555555555555554443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-38  Score=308.00  Aligned_cols=231  Identities=25%  Similarity=0.332  Sum_probs=212.8

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI  147 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~  147 (568)
                      +..+..|.||||.||..|+.+++++|++.                                  +.+++..+..|+||||+
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~   50 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA----------------------------------GANIDTCSEDQRTPLME   50 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc----------------------------------CCCcCccCCCCCCHHHH
Confidence            45688999999999999999999999952                                  34567778899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHH
Q 008358          148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA  227 (568)
Q Consensus       148 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~  227 (568)
                      |+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.++.+++..+..|.||||+|+..|+.+++++
T Consensus        51 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  129 (237)
T 3b7b_A           51 AAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL  129 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999998 67889999999999999999999999999778888999999999999999999999999


Q ss_pred             HHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccc
Q 008358          228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL  307 (568)
Q Consensus       228 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~  307 (568)
                      |++.++++ +..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+
T Consensus       130 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~  206 (237)
T 3b7b_A          130 LLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLK  206 (237)
T ss_dssp             HHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC
T ss_pred             HHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCcc
Confidence            99999987 77899999999999999999999999999999 88899999999999999999999999999 89999999


Q ss_pred             cCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 008358          308 TRDHKTALDIAEGLPSSEEASEIKDCLAR  336 (568)
Q Consensus       308 d~~G~T~L~~A~~~~~~~~~~~i~~~L~~  336 (568)
                      |.+|+||||+|+..++.....++.+.|.+
T Consensus       207 d~~g~t~l~~A~~~~~~~~~~~l~~~l~d  235 (237)
T 3b7b_A          207 NKEGETPLQCASLNSQVWSALQMSKALQD  235 (237)
T ss_dssp             CTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999998776666666666554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8e-40  Score=338.74  Aligned_cols=266  Identities=20%  Similarity=0.249  Sum_probs=228.1

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccc-cCCCCchHHHHHhhhhHHHHHHhhh------cCcccccccCC
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVG-NLSGAEFDTEVAEIRSSVVNELLKY------STKEGLTRKNR  139 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~------~~~~~~~~~~~  139 (568)
                      ....+..|.||||.|+..|+ ++++.|+. .+.+..+ ..+.+++|+|+..++.++++.|+..      ..+.+++.+|.
T Consensus        87 ~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~-~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~  164 (373)
T 2fo1_E           87 PTEPEPESPIKLHTEAAGSY-AITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC  164 (373)
T ss_dssp             -------CCCHHHHHHHSSS-CCCSCCST-TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             ccCCCCCCccHHHHHhcCCc-hHHHHhcc-ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence            34568889999999999554 77777764 3444445 5678999999999999888877642      45778999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCccccCcCCChHHHHHH
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLLEISRSNGKNALHFAA  217 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~A~  217 (568)
                      .|+||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|++++.  .+++..|.+|.||||+|+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence            9999999999999999999999999998 6788999999999999999999999998742  567888999999999999


Q ss_pred             HcC---CHHHHHHHHcCCCcccc-------ccCCCCCCHHHHHHhCCCHHHHHHHHHcC-CccccCCCCCCChHHHHHHH
Q 008358          218 RQG---HVDVVKALLSKDPQLAR-------RTDKKGQTALHMAVKGQSCEVVKLLLEAD-AAIVMLPDKFGNTALHVATR  286 (568)
Q Consensus       218 ~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~G~TpLh~A~~  286 (568)
                      ..+   +.+++++|++.++++..       ..|..|+||||+|+..|+.+++++|++.+ ++ ++.+|..|+||||+|+.
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~  322 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQ  322 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHH
Confidence            998   89999999999988732       35779999999999999999999999987 66 89999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      .|+.+++++|++ .|++++.+|..|+||||+|+..++.    +++++|.++|+.+
T Consensus       323 ~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~----~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          323 EGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHH----NIVDIFDRCRPER  372 (373)
T ss_dssp             HTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCH----HHHHHHHTTC---
T ss_pred             cCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCH----HHHHHHHhcCccc
Confidence            999999999999 8999999999999999999998764    7889999888753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.2e-39  Score=318.62  Aligned_cols=255  Identities=22%  Similarity=0.243  Sum_probs=202.1

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhc------------CCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccC
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYG------------IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKN  138 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~------------~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  138 (568)
                      ...|.|+||+|+..|+.+.+..++..            ......+..+.++++.|+..++.++++.|++.  +.+++.+|
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~   89 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIIT   89 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEEC
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence            35688999999999998888876532            11223345567899999999999999999975  56788999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358          139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  218 (568)
Q Consensus       139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  218 (568)
                      ..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+. +++. +.+|.||||+|+.
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~g~t~L~~A~~  166 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQP-ESDLASPIHEAAR  166 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSSC-SCTTSCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC-CCCC-CCCCCCHHHHHHH
Confidence            99999999999999999999999999998 6789999999999999999999999999844 4443 4569999999999


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      .|+.+++++|++.++++ +..|.+|+||||+|+..|+.+++++|++.|++ ++ .|..|+||||+|+..|+.+++++|++
T Consensus       167 ~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~  243 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMD  243 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999987 77899999999999999999999999999999 55 48999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHc-Ccc
Q 008358          299 LPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC-GAV  340 (568)
Q Consensus       299 ~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~-ga~  340 (568)
                       .|++++.+|.+|+||||+|+..      .+++++|+++ |+.
T Consensus       244 -~gad~~~~d~~g~t~l~~A~~~------~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          244 -FGADTQAKNAEGKRPVELVPPE------SPLAQLFLEREGAS  279 (285)
T ss_dssp             -TTCCTTCCCTTSCCGGGGSCTT------SHHHHHHHHHC---
T ss_pred             -CCCCCCCcCCCCCCHHHHhcCc------cHHHHHHHHhhccC
Confidence             8999999999999999999842      2677777777 543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7e-39  Score=313.31  Aligned_cols=242  Identities=22%  Similarity=0.253  Sum_probs=181.5

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccc-cccCCCCCcHH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL-TRKNRSGFDPL  145 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~g~TpL  145 (568)
                      .+.+|.+|.||||+|+..|+.-.+                   ...+...++.++++.|+..+  .++ +..|..|+|||
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~-------------------~~~~~~~~~~~~v~~Ll~~g--~~~~~~~d~~g~t~L   61 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLET-------------------GNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETAL   61 (253)
T ss_dssp             ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccc-------------------cchhhcCCChHHHHHHHHcc--CCcccccCCCCCcHH
Confidence            456788999999999998842100                   00123344555566666443  233 34588999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHH
Q 008358          146 HIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV  225 (568)
Q Consensus       146 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  225 (568)
                      |+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|+..|+.+++
T Consensus        62 ~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  140 (253)
T 1yyh_A           62 HLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  140 (253)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence            9999999999999999999998 678899999999999999999999999997778899999999999999999999999


Q ss_pred             HHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc
Q 008358          226 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN  305 (568)
Q Consensus       226 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~  305 (568)
                      ++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++
T Consensus       141 ~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~  217 (253)
T 1yyh_A          141 EDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRD  217 (253)
T ss_dssp             HHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTT
T ss_pred             HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCcc
Confidence            9999999987 78899999999999999999999999999999 88999999999999999999999999999 899999


Q ss_pred             cccCCCCCHHHHHhhCCCchhhHHHHHHHHHc
Q 008358          306 ALTRDHKTALDIAEGLPSSEEASEIKDCLARC  337 (568)
Q Consensus       306 ~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~  337 (568)
                      .+|..|+||+|+|+..++.    +|+++|...
T Consensus       218 ~~d~~g~tpl~~A~~~g~~----~i~~~l~~~  245 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQERMHH----DIVRLLDLE  245 (253)
T ss_dssp             CCCTTCCCHHHHHHHTTCH----HHHHHHHC-
T ss_pred             ccccCCCCHHHHHHHcCCH----HHHHHHHHH
Confidence            9999999999999998765    566666543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.8e-38  Score=323.05  Aligned_cols=281  Identities=25%  Similarity=0.269  Sum_probs=212.5

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHh--cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILY--GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDP  144 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~--~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~Tp  144 (568)
                      ....+..|.|+||.||+.|+.+.++.|+.  +.+.+..+..+.+++++|+..++.++++.|++.  +.+++.+|..|+||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~   94 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVP   94 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcH
Confidence            33445567799999999999999999996  345555667788999999999999999999975  56788899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH--------
Q 008358          145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA--------  216 (568)
Q Consensus       145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--------  216 (568)
                      ||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+|.|        
T Consensus        95 L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A           95 LHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHH
Confidence            99999999999999999999998 67889999999999999999999999998 556677777777666543        


Q ss_pred             -------------HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC---CCHHHHHHHHHcCCccccCCCCCCChH
Q 008358          217 -------------ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTA  280 (568)
Q Consensus       217 -------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~d~~G~Tp  280 (568)
                                   +..++.+.++.++...... ...+..|+||||+|+..   ++.+++++|++.|++ ++.+|..|+||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~  250 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTP  250 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCH
Confidence                         3445555555555554332 33456667777777766   446677777777766 66667777777


Q ss_pred             HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHh
Q 008358          281 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQ  358 (568)
Q Consensus       281 Lh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~  358 (568)
                      ||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..++    .+++++|+++|+..+..+..+.++++.+.+.
T Consensus       251 L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGH----LQTCRLLLSYGSDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHSCHH
T ss_pred             HHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHcCCCCCCcCCCCCChhhhhhHH
Confidence            777777777777777776 677777777777777777766544    3566667777776666666666666554443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.4e-38  Score=305.24  Aligned_cols=233  Identities=24%  Similarity=0.286  Sum_probs=203.4

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI  147 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~  147 (568)
                      +.+|.+|.||||.||..|+.+++++|++.                            +.  ..+.+++.+|..|+||||+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------~~--~~~~~~~~~~~~g~t~L~~   52 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNL----------------------------FQ--QGGRELDIYNNLRQTPLHL   52 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHH----------------------------HH--HTTCCSCCCCTTSCCHHHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHH----------------------------HH--hcCCCCCcccccCCCHHHH
Confidence            45789999999999999999999999851                            11  2355678889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CccccCcCCChHHHHHHHcCCHHH
Q 008358          148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDV  224 (568)
Q Consensus       148 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~i  224 (568)
                      |+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+..   +++..|..|.||||+|+..|+.++
T Consensus        53 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  131 (241)
T 1k1a_A           53 AVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET  131 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHH
Confidence            99999999999999999998 67789999999999999999999999998652   677888999999999999999999


Q ss_pred             HHHHHcCCCccccccC-CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 008358          225 VKALLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  303 (568)
Q Consensus       225 v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  303 (568)
                      +++|++.++++ +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++
T Consensus       132 ~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~  208 (241)
T 1k1a_A          132 VQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGAD  208 (241)
T ss_dssp             HHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCC
T ss_pred             HHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC
Confidence            99999999998 4455 8899999999999999999999999999 88999999999999999999999999999 8999


Q ss_pred             cccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 008358          304 VNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  338 (568)
Q Consensus       304 ~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~g  338 (568)
                      ++.+|..|+||||+|+..+    ..++++.|...+
T Consensus       209 ~~~~~~~g~tpl~~A~~~~----~~~i~~~l~~~~  239 (241)
T 1k1a_A          209 SSLKNCHNDTPLMVARSRR----VIDILRGKATRP  239 (241)
T ss_dssp             TTCCCTTSCCTTTTCSSHH----HHHHHTC-----
T ss_pred             CCCcCCCCCCHHHHHHhcC----cHHHHhhhccCC
Confidence            9999999999999998743    445666555543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.9e-38  Score=313.06  Aligned_cols=250  Identities=21%  Similarity=0.200  Sum_probs=164.4

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhc-CC---ccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCc
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYG-ID---SQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFD  143 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-~~---~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~T  143 (568)
                      +..|..|.||||+||+.|+.++|++|++. .+   .+..+..+.+|+++|+..++.++++.|++.  +++++.+|..|+|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t   80 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            45788999999999999999999999963 33   233344455666666666666666666643  3445555666666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcc------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCCh
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQ------------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN  211 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  211 (568)
                      |||+|+..|+.+++++|++++++...            .....+.++++.++..+....+..++...+.+++..+..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            66666666666666666665544211            111223445555554444433333333334456778889999


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccC-CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358          212 ALHFAARQGHVDVVKALLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  290 (568)
Q Consensus       212 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~  290 (568)
                      |||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCc
Confidence            999999999999999999999988 4445 4599999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 008358          291 EIVTELLSLPDTNVNALTRDHKTALDIAEGLP  322 (568)
Q Consensus       291 ~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~  322 (568)
                      +++++|++ .|++++.+|.+|.||+++|....
T Consensus       239 ~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          239 ILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHHH-TTCCCCCCC--------------
T ss_pred             HHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            99999999 89999999999999999987643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.3e-37  Score=297.61  Aligned_cols=227  Identities=27%  Similarity=0.339  Sum_probs=206.7

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      +..+++|||.|++.|+.+.++.|++..                                 +..++..|..|+||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~---------------------------------~~~~~~~~~~g~t~L~~A~~   49 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILAD---------------------------------KSLATRTDQDSRTALHWACS   49 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHC---------------------------------GGGGGCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhc---------------------------------hhhhhcCCCCCCCHHHHHHH
Confidence            446789999999999999999999521                                 22356678899999999999


Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358          151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS  230 (568)
Q Consensus       151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  230 (568)
                      .|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++
T Consensus        50 ~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  127 (231)
T 3aji_A           50 AGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE  127 (231)
T ss_dssp             HTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999998 67889999999999999999999999998 66788889999999999999999999999999


Q ss_pred             CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCC
Q 008358          231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD  310 (568)
Q Consensus       231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~  310 (568)
                      .+.++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus       128 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~  204 (231)
T 3aji_A          128 GGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKE  204 (231)
T ss_dssp             TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTT
T ss_pred             cCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCC
Confidence            99987 77899999999999999999999999999999 88899999999999999999999999999 79999999999


Q ss_pred             CCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 008358          311 HKTALDIAEGLPSSEEASEIKDCLARCGA  339 (568)
Q Consensus       311 G~T~L~~A~~~~~~~~~~~i~~~L~~~ga  339 (568)
                      |+||+|+|...    ...+++++|.++|+
T Consensus       205 g~t~l~~A~~~----~~~~i~~lL~~~~a  229 (231)
T 3aji_A          205 EKTPLQVAKGG----LGLILKRLAEGEEA  229 (231)
T ss_dssp             SCCHHHHSCHH----HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHhh----HHHHHHHHHccccc
Confidence            99999999763    34578888888775

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.5e-37  Score=295.63  Aligned_cols=212  Identities=25%  Similarity=0.273  Sum_probs=191.8

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH  153 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~  153 (568)
                      |+||||.||+.|+.++++.|++...                                 ...+..|..|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~   48 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP---------------------------------SLLLQKDQDGRIPLHWSVSFQA   48 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG---------------------------------GGTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc---------------------------------cccccCCCCCCCHHHHHHHcCC
Confidence            6799999999999999999996321                                 1234468899999999999999


Q ss_pred             HHHHHHHHhcC--CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358          154 HAIVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD-GGLLEISRSNGKNALHFAARQGHVDVVKALLS  230 (568)
Q Consensus       154 ~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  230 (568)
                      .+++++|+++|  +++....+..|.||||+|+..|+.+++++|++++ ..+++..+..|.||||+|+..|+.+++++|++
T Consensus        49 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  128 (228)
T 2dzn_A           49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE  128 (228)
T ss_dssp             HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence            99999999999  5554447889999999999999999999999985 26778889999999999999999999999999


Q ss_pred             CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC-CccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 008358          231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD-AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  309 (568)
Q Consensus       231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~  309 (568)
                      ++.++ +..|..|+||||+|+..|+.+++++|++.| ++ ++.+|..|+||||+|+..|+.+++++|++..|++++.+|.
T Consensus       129 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          129 NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             TTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             cCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            99987 788999999999999999999999999999 66 8999999999999999999999999999438999999999


Q ss_pred             CCCCHHHHHhh
Q 008358          310 DHKTALDIAEG  320 (568)
Q Consensus       310 ~G~T~L~~A~~  320 (568)
                      +|+||+|+|..
T Consensus       207 ~g~t~l~~A~~  217 (228)
T 2dzn_A          207 KGAKAEDVALN  217 (228)
T ss_dssp             TSCBGGGGCSS
T ss_pred             CCCcHHHHHHH
Confidence            99999999975

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.4e-38  Score=324.40  Aligned_cols=250  Identities=16%  Similarity=0.173  Sum_probs=187.4

Q ss_pred             hHhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCc
Q 008358           65 YVKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFD  143 (568)
Q Consensus        65 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~T  143 (568)
                      ...+..|..|.||||.||..|+.++|++||+ +.+.+..+..+.+++++|+..++.++++.|++.+.    +..+.+|.|
T Consensus        11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t   86 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQK   86 (364)
T ss_dssp             -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBC
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCC
Confidence            3445567788999999999999999999997 45555566667778888888888888888887654    222346788


Q ss_pred             HHHHHHHcCCHHHHHHHHhc----CCCCccc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCC
Q 008358          144 PLHIAAVQGHHAIVQVLLDH----DPSLSQT-----------------TGPSNATPLVSAATRG--HTAVVNELLSKDGG  200 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~  200 (568)
                      |||+|+..|+.+++++|+++    |.++ ..                 .|..|.||||+|+..|  +.+++++|++. +.
T Consensus        87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga  164 (364)
T 3ljn_A           87 PIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GA  164 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TC
T ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CC
Confidence            88888888888888888887    5554 22                 5667788888888888  78888888877 56


Q ss_pred             CccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc----ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCC
Q 008358          201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL----ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF  276 (568)
Q Consensus       201 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~  276 (568)
                      +++..|..|.||||+|+..|+.+++++|++.+++.    .+..|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~  243 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNE  243 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence            67777788888888888888888888888877761    266777888888888888888888888888887 6778888


Q ss_pred             CChHHHHHHHcCcHHHHHHHhcCCCCCccc------------ccCCCCCHHHHHhhCC
Q 008358          277 GNTALHVATRKKRTEIVTELLSLPDTNVNA------------LTRDHKTALDIAEGLP  322 (568)
Q Consensus       277 G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~------------~d~~G~T~L~~A~~~~  322 (568)
                      |+||||+|+..|+.+++++|++ .|++++.            .+..|+||++.|+..+
T Consensus       244 g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          244 HTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             SCCHHHHHHHTCCHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             CCCHHHHHHHhChHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence            8888888888888888888887 5555432            4556777777766543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=310.26  Aligned_cols=221  Identities=27%  Similarity=0.344  Sum_probs=171.0

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      |..+.+||+.||+.|+.++|++||+.......                          .....++..+..|.||||.|+.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~--------------------------~~~~~~~~~~~~~~t~L~~a~~   61 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLE--------------------------DAEDTVSAADPEFCHPLCQCPK   61 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------------------
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccc--------------------------cccccccccCccCCCHHHHHHH
Confidence            44566999999999999999999974332211                          1122356678889999999998


Q ss_pred             cCCH-HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHH
Q 008358          151 QGHH-AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL  229 (568)
Q Consensus       151 ~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  229 (568)
                      .++. .+++.|++.|+++ +..|.+|+||||+|+..|+.+++++|++. +.+++..+.+|.||+|.|+..++.++++.|+
T Consensus        62 ~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  139 (269)
T 4b93_B           62 CAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLL  139 (269)
T ss_dssp             -------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHH
Confidence            8876 4899999999998 67899999999999999999999999998 5678889999999999999999999999999


Q ss_pred             cCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 008358          230 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  309 (568)
Q Consensus       230 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~  309 (568)
                      +.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++|++|++ .|+|++.+|.
T Consensus       140 ~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~  216 (269)
T 4b93_B          140 DSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNK  216 (269)
T ss_dssp             HTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCT
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC
Confidence            999998 78899999999999999999999999999999 89999999999999999999999999999 8999999999


Q ss_pred             CCCCHHHHHhhCC
Q 008358          310 DHKTALDIAEGLP  322 (568)
Q Consensus       310 ~G~T~L~~A~~~~  322 (568)
                      +|+||||+|++.+
T Consensus       217 ~G~TpL~~A~~~~  229 (269)
T 4b93_B          217 RQRTAVDCAEQNS  229 (269)
T ss_dssp             TSCCSGGGSCTTC
T ss_pred             CCCCHHHHHHhCC
Confidence            9999999997643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-36  Score=296.19  Aligned_cols=234  Identities=23%  Similarity=0.254  Sum_probs=216.0

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      +..|.||||.|+..|+.+++++|++ +.+.+..+..+.++++.|+..++.++++.|++.  +.+++.+|..|+||||+|+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~  113 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAA  113 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHHH
Confidence            6779999999999999999999997 455666667788999999999999999999975  5668889999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcccC---------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          150 VQGHHAIVQVLLDHDPSLSQTT---------GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       150 ~~g~~~iv~~Ll~~~~~~~~~~---------~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      ..|+.+++++|+++|+++....         +..|.||||+|+..|+.+++++|++..+.+++..|..|.||||.|+..+
T Consensus       114 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  193 (285)
T 1wdy_A          114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             HhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence            9999999999999999884332         7789999999999999999999999878888999999999999999999


Q ss_pred             C----HHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH-cCCccccCCCCCCChHHHHHHHcCcHHHHHH
Q 008358          221 H----VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTE  295 (568)
Q Consensus       221 ~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~  295 (568)
                      +    .+++++|++.+.++ +..|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..|+.+++++
T Consensus       194 ~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~  271 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHH
Confidence            9    99999999999998 7889999999999999999999999999 7888 88999999999999999999999999


Q ss_pred             HhcCCCCCcccccC
Q 008358          296 LLSLPDTNVNALTR  309 (568)
Q Consensus       296 Ll~~~g~~~~~~d~  309 (568)
                      |++ .|++++.+|.
T Consensus       272 Ll~-~Ga~~~~~d~  284 (285)
T 1wdy_A          272 LCK-RGASTDCGDL  284 (285)
T ss_dssp             HHH-HSSCSCCSSC
T ss_pred             HHH-cCCCCCcccc
Confidence            999 8999998874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-36  Score=297.79  Aligned_cols=232  Identities=22%  Similarity=0.238  Sum_probs=180.6

Q ss_pred             cccccCCCCCcHHHHHHHcC-------------CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 008358          133 GLTRKNRSGFDPLHIAAVQG-------------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG  199 (568)
Q Consensus       133 ~~~~~~~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~  199 (568)
                      ++|.+|.+|+||||+|+..|             +.+++++|+++|+++....|..|.||||+|+..|+.+++++|+++ +
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g   80 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-S   80 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-C
Confidence            46888999999999999987             899999999999999777899999999999999999999999998 6


Q ss_pred             CCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCCh
Q 008358          200 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT  279 (568)
Q Consensus       200 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~T  279 (568)
                      .+++..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+|
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t  159 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKS  159 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCC
Confidence            678889999999999999999999999999999855588899999999999999999999999999999 8899999999


Q ss_pred             HHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358          280 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI  359 (568)
Q Consensus       280 pLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~  359 (568)
                      |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++    .+++++|+++|+..+..+..+++++..+....
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGS----YETAKVLLDHFANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHHHcCCCccccccCCCCHHHHHHHcC
Confidence            9999999999999999999 899999999999999999998765    47899999999999888889999999999998


Q ss_pred             hhhhhhhHhHhh
Q 008358          360 KKDVHTQLEQTR  371 (568)
Q Consensus       360 ~~~~~~~l~~~~  371 (568)
                      +.++...+.+..
T Consensus       235 ~~~i~~~l~~~~  246 (253)
T 1yyh_A          235 HHDIVRLLDLEH  246 (253)
T ss_dssp             CHHHHHHHHC--
T ss_pred             CHHHHHHHHHHh
Confidence            888887776543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=285.99  Aligned_cols=230  Identities=25%  Similarity=0.339  Sum_probs=206.1

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      .|..|.|+||.|+..|+.+++++|++.                                  +.+++.++..|.||||+|+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~   50 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEA----------------------------------GYDVRQPDKENVTLLHWAA   50 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHc----------------------------------CCCcCCCCCCCCCHHHHHH
Confidence            467788999999999999999999952                                  3456777889999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHH
Q 008358          150 VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL  229 (568)
Q Consensus       150 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  229 (568)
                      ..|+.+++++|+++|+++....+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|+
T Consensus        51 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  129 (240)
T 3eu9_A           51 INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLI  129 (240)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHH
Confidence            999999999999999998777777899999999999999999999988 6677888999999999999999999999999


Q ss_pred             cCCCccccccCCCCCCHHHHHHhCCC-HHHHHHHHHcCCccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccc
Q 008358          230 SKDPQLARRTDKKGQTALHMAVKGQS-CEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNAL  307 (568)
Q Consensus       230 ~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~  307 (568)
                      +.++++ +..|..|.||||+|+..++ .+++++|++.|++ ++..+. .|+||||+|+..|+.+++++|++ .|++++.+
T Consensus       130 ~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~  206 (240)
T 3eu9_A          130 AKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQ  206 (240)
T ss_dssp             HTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCB
T ss_pred             hcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc
Confidence            999987 7789999999999996555 8999999999999 666776 89999999999999999999999 79999999


Q ss_pred             cCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          308 TRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       308 d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      |..|+||||+|+..++.    +++++|.++++..
T Consensus       207 ~~~g~t~l~~A~~~~~~----~~v~~L~~~~~~~  236 (240)
T 3eu9_A          207 NIKGESALDLAKQRKNV----WMINHLQEARQAK  236 (240)
T ss_dssp             CTTSCBHHHHHHHTTCH----HHHHHHHHHC---
T ss_pred             CCCCCCHHHHHHHcCcH----HHHHHHHHhhhcc
Confidence            99999999999998764    7888888887654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-36  Score=313.54  Aligned_cols=278  Identities=20%  Similarity=0.187  Sum_probs=223.0

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccC-CCCCcHHHHHHHcCCH
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHH  154 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-~~g~TpLh~Aa~~g~~  154 (568)
                      ++++-+...|+.+.++.++..    ..+..+.++++.|+..+ .++++.|+    ..+++..| ..|+||||+|+..|+.
T Consensus        68 ~~~~~~~~~g~~~~~~~~~~~----~~~~~g~t~L~~Aa~~~-~~~~~~L~----~~~~n~~d~~~g~t~Lh~Aa~~g~~  138 (373)
T 2fo1_E           68 GYGNGNDFLGDFNHTNLQIPT----EPEPESPIKLHTEAAGS-YAITEPIT----RESVNIIDPRHNRTVLHWIASNSSA  138 (373)
T ss_dssp             ------------------------------CCCHHHHHHHSS-SCCCSCCS----TTTTTTCCCSSCCCHHHHHHCTTCC
T ss_pred             ccCCCCCcccccccccccccc----CCCCCCccHHHHHhcCC-chHHHHhc----cccccccCCcCCCCHHHHHHHCCCH
Confidence            567788889999999988743    22455788999999854 45666554    35678888 7999999999999999


Q ss_pred             HHHHHHH--------hcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHH
Q 008358          155 AIVQVLL--------DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK  226 (568)
Q Consensus       155 ~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~  226 (568)
                      +++++|+        +.|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.++++
T Consensus       139 ~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~  216 (373)
T 2fo1_E          139 EKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMV  216 (373)
T ss_dssp             SCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHH
Confidence            8888776        789998 67899999999999999999999999998 6678899999999999999999999999


Q ss_pred             HHHcCC---CccccccCCCCCCHHHHHHhCC---CHHHHHHHHHcCCccccC--------CCCCCChHHHHHHHcCcHHH
Q 008358          227 ALLSKD---PQLARRTDKKGQTALHMAVKGQ---SCEVVKLLLEADAAIVML--------PDKFGNTALHVATRKKRTEI  292 (568)
Q Consensus       227 ~Ll~~~---~~~~~~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~~--------~d~~G~TpLh~A~~~g~~~i  292 (568)
                      +|++.+   .++ +..|..|+||||+|+..+   +.+++++|+++|++ ++.        .|..|+||||+|+..|+.++
T Consensus       217 ~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  294 (373)
T 2fo1_E          217 YMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPI  294 (373)
T ss_dssp             HHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             HHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHH
Confidence            999987   454 778999999999999988   89999999999998 443        67899999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358          293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  370 (568)
Q Consensus       293 v~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  370 (568)
                      +++|++..+++++.+|.+|+||||+|+..++    .+++++|+++|+..+..+..+.+++..++...+.++.+.|.+.
T Consensus       295 v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR----IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC----HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHhcCCCccCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999985669999999999999999998765    4789999999999988888899999999998888887776543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-35  Score=293.53  Aligned_cols=247  Identities=19%  Similarity=0.205  Sum_probs=141.2

Q ss_pred             CCCCchHHHHHhhhhHHHHHHhhhcCccc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 008358          105 LSGAEFDTEVAEIRSSVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  183 (568)
Q Consensus       105 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~-~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa  183 (568)
                      .+.+++|.|+..++.++++.|++.+.... ++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~   86 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLAC   86 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            34444444544444444444444333211 4444444455555555555555555555544444 334444445555555


Q ss_pred             HcCCHHHHHHHHHcCCCCc------------cccCcCCChHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCCCHHHHH
Q 008358          184 TRGHTAVVNELLSKDGGLL------------EISRSNGKNALHFAARQGHVDVVKALLS-KDPQLARRTDKKGQTALHMA  250 (568)
Q Consensus       184 ~~g~~~~v~~Ll~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A  250 (568)
                      ..|+.+++++|++++....            ......+.++++.++..+.......++. .+.+ .+..|..|+||||+|
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A  165 (282)
T 1oy3_D           87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVA  165 (282)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTTSCCHHHHH
T ss_pred             HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHH
Confidence            4455555544444322110            0111223344444433332222222211 1222 366788999999999


Q ss_pred             HhCCCHHHHHHHHHcCCccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHH
Q 008358          251 VKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE  329 (568)
Q Consensus       251 ~~~~~~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~  329 (568)
                      +..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++    .+
T Consensus       166 ~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~----~~  239 (282)
T 1oy3_D          166 VIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPN----PI  239 (282)
T ss_dssp             HHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSC----HH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCC----cH
Confidence            999999999999999999 666665 59999999999999999999999 799999999999999999998765    47


Q ss_pred             HHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358          330 IKDCLARCGAVRANELNQPRDELRKTVTQI  359 (568)
Q Consensus       330 i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~  359 (568)
                      ++++|+++|+..+.....+.+++..+.+..
T Consensus       240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHHTTCCCCCCC--------------
T ss_pred             HHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            999999999999988888888887665543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.3e-35  Score=299.39  Aligned_cols=258  Identities=23%  Similarity=0.244  Sum_probs=228.3

Q ss_pred             cCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 008358          104 NLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  183 (568)
Q Consensus       104 ~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa  183 (568)
                      ..+.++++.|+..|+.+.++.++.. .+.+++.+|..|+||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHH
Confidence            3456789999999999999999864 46778899999999999999999999999999999998 678899999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHH------------
Q 008358          184 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV------------  251 (568)
Q Consensus       184 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~------------  251 (568)
                      ..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++++++ +..+..|.||+|+|+            
T Consensus       100 ~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          100 SYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            99999999999998 6678889999999999999999999999999999987 778999999988764            


Q ss_pred             ---------hCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc---CcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          252 ---------KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       252 ---------~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                               ..++.+.++.++..+.. ....+..|+||||+|+..   ++.+++++|++ .|++++.+|.+|+||||+|+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~  255 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAA  255 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHH
Confidence                     45666666666666554 455788899999999999   66899999999 89999999999999999999


Q ss_pred             hCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHhh
Q 008358          320 GLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR  371 (568)
Q Consensus       320 ~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  371 (568)
                      ..++.    +++++|+++|+..+..+..+.++++.++.....++.+.|-+..
T Consensus       256 ~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          256 ERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG  303 (351)
T ss_dssp             HTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            98764    7899999999999888889999999999988888888776543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3e-35  Score=281.24  Aligned_cols=213  Identities=22%  Similarity=0.287  Sum_probs=193.5

Q ss_pred             HHHHHHhhhcCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 008358          120 SVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD  198 (568)
Q Consensus       120 ~~v~~Ll~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~  198 (568)
                      ++++.|++.  +.+++. .|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+
T Consensus         5 ~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            5 AVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             HHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            334444433  334444 4889999999999999999999999999998 678899999999999999999999999997


Q ss_pred             CCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCC
Q 008358          199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN  278 (568)
Q Consensus       199 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~  278 (568)
                      +.+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~  159 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREE  159 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCc
Confidence            7788899999999999999999999999999999987 77899999999999999999999999999999 889999999


Q ss_pred             hHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358          279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  342 (568)
Q Consensus       279 TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  342 (568)
                      ||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..++.    +++++|.++|+...
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEYNLVRS  218 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCSSC
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcch----HHHHHHHHcCCCcc
Confidence            99999999999999999999 8999999999999999999987654    78999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=291.23  Aligned_cols=243  Identities=19%  Similarity=0.223  Sum_probs=198.3

Q ss_pred             ccCCCCchHHHHHhhhhHHHHHHhhhc---------CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 008358          103 GNLSGAEFDTEVAEIRSSVVNELLKYS---------TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP  173 (568)
Q Consensus       103 ~~~~~~~l~~a~~~~~~~~v~~Ll~~~---------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~  173 (568)
                      ...+.+++|+|+..|+.+.+..++...         ....++.+|..|+||||+|+..|+.+++++|++.|+++ +..|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence            345678999999999977666654432         12346778999999999999999999999999999998 67899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC
Q 008358          174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  253 (568)
Q Consensus       174 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  253 (568)
                      .|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++.++++ + .+.+|.||||+|+..
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARR  167 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHc
Confidence            999999999999999999999998 6778899999999999999999999999999999887 3 345699999999999


Q ss_pred             CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 008358          254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC  333 (568)
Q Consensus       254 ~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~  333 (568)
                      |+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++. |..|+||||+|+..++.    +++++
T Consensus       168 g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~----~~v~~  240 (285)
T 3d9h_A          168 GHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASE----ELACL  240 (285)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCH----HHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCH----HHHHH
Confidence            999999999999999 88999999999999999999999999999 7999995 89999999999997764    78899


Q ss_pred             HHHcCcccccccCCChhHHHHHH
Q 008358          334 LARCGAVRANELNQPRDELRKTV  356 (568)
Q Consensus       334 L~~~ga~~~~~~~~~~~~l~~~~  356 (568)
                      |+++|++.+..+..++++++.+.
T Consensus       241 Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          241 LMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHCCCCCCCcCCCCCCHHHHhc
Confidence            99999999888888888887766

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.2e-36  Score=298.08  Aligned_cols=236  Identities=23%  Similarity=0.280  Sum_probs=155.7

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      ..|.||||.||..|+.++|+.|++ +.+.+..+..+.++++.|+..++.++++.|++.  +.+++.+|..|+||||+|+.
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHH
Confidence            356699999999999999999996 333333333444445555555555555544432  23344444445555555555


Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358          151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS  230 (568)
Q Consensus       151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  230 (568)
                      .|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.++...+.+.+..+..+.++++.        .+..++.
T Consensus       116 ~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~  186 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLN  186 (299)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHh
Confidence            55555555555554444 33444445555555555555555444444333333322222222221        1223333


Q ss_pred             CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCC
Q 008358          231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD  310 (568)
Q Consensus       231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~  310 (568)
                      .+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus       187 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~  264 (299)
T 1s70_B          187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKV  264 (299)
T ss_dssp             HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCC
Confidence            33333345678899999999999999999999999999 88999999999999999999999999999 89999999999


Q ss_pred             CCCHHHHHhh
Q 008358          311 HKTALDIAEG  320 (568)
Q Consensus       311 G~T~L~~A~~  320 (568)
                      |+||||+|.+
T Consensus       265 g~t~l~~A~~  274 (299)
T 1s70_B          265 GQTAFDVADE  274 (299)
T ss_dssp             SCCTTTSCCS
T ss_pred             CCCHHHHHHH
Confidence            9999999964

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-34  Score=277.84  Aligned_cols=219  Identities=25%  Similarity=0.326  Sum_probs=202.7

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358          133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  212 (568)
Q Consensus       133 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  212 (568)
                      +++.+|..|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcH
Confidence            56788999999999999999999999999999998 67888999999999999999999999988 66788889999999


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHH
Q 008358          213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  292 (568)
Q Consensus       213 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~i  292 (568)
                      ||+|+..|+.+++++|++.++...+..|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+..|+.++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999555588899999999999999999999999999999 88899999999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358          293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI  359 (568)
Q Consensus       293 v~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~  359 (568)
                      +++|++ .|++++.+|..|+||||+|+..++.    +++++|+++|+..+..+..+.++++.+....
T Consensus       160 ~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          160 AEILLA-AKCDLHAVNIHGDSPLHIAARENRY----DCVVLFLSRDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             HHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             HHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCH----hHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence            999999 8999999999999999999997654    7889999999998888888888887765543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-35  Score=303.78  Aligned_cols=231  Identities=19%  Similarity=0.216  Sum_probs=207.2

Q ss_pred             cccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHH
Q 008358          100 QMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPL  179 (568)
Q Consensus       100 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  179 (568)
                      +..+..+.++++.|+..|+.++++.|++.  +.+++.+|..|+||||+|+..|+.++|++|+++|++.   .+..|.|||
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L   88 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPI   88 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHH
Confidence            33445567899999999999999999976  5678999999999999999999999999999999965   235799999


Q ss_pred             HHHHHcCCHHHHHHHHHcC---CCCccc-----------------cCcCCChHHHHHHHcC--CHHHHHHHHcCCCcccc
Q 008358          180 VSAATRGHTAVVNELLSKD---GGLLEI-----------------SRSNGKNALHFAARQG--HVDVVKALLSKDPQLAR  237 (568)
Q Consensus       180 ~~Aa~~g~~~~v~~Ll~~~---~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~  237 (568)
                      |+|+..|+.+++++|++.+   +..++.                 .|..|.||||+|+..|  +.+++++|++.++++ +
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-T  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-T
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-c
Confidence            9999999999999999872   233333                 7889999999999999  999999999999997 7


Q ss_pred             ccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc----ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCC
Q 008358          238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAI----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT  313 (568)
Q Consensus       238 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T  313 (568)
                      ..|..|+||||+|+..|+.+++++|+++|++.    ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t  246 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTV  246 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence            88999999999999999999999999998874    67889999999999999999999999999 89999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          314 ALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       314 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      |||+|+..++.    +++++|+++|+..
T Consensus       247 pL~~A~~~g~~----~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          247 PLYLSVRAAMV----LLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHHHHTCCH----HHHHHHHHHSCHH
T ss_pred             HHHHHHHhChH----HHHHHHHHcCCch
Confidence            99999998764    7888899988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.4e-36  Score=289.99  Aligned_cols=220  Identities=24%  Similarity=0.280  Sum_probs=189.9

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI  147 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~  147 (568)
                      +.+|.+|.||||.|+..|+.++++.|++...                              ..+.+++.+|..|+||||+
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------------------~~~~~~~~~~~~g~t~L~~   51 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVK------------------------------GDLAFLNFQNNLQQTPLHL   51 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----------------------------------CCCCCCCCTTCCCHHHH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhh------------------------------ccHHHhhccCCCCCCHHHH
Confidence            4678899999999999999999999985321                              1234678889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CccccCcCCChHHHHHHHcCCH
Q 008358          148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHV  222 (568)
Q Consensus       148 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~  222 (568)
                      |+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+..     ..+..+..|.||||+|+..|+.
T Consensus        52 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  130 (236)
T 1ikn_D           52 AVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL  130 (236)
T ss_dssp             HHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999998 67889999999999999999999999998642     2567788999999999999999


Q ss_pred             HHHHHHHcCCCccccccCC-CCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC
Q 008358          223 DVVKALLSKDPQLARRTDK-KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD  301 (568)
Q Consensus       223 ~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  301 (568)
                      +++++|+++|+++ +..+. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|
T Consensus       131 ~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~g  207 (236)
T 1ikn_D          131 GIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LT  207 (236)
T ss_dssp             HHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TS
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHH-cc
Confidence            9999999999998 56666 999999999999999999999999999 88999999999999999999999999999 89


Q ss_pred             CCcc--cccCCCCCHHHHHhhC
Q 008358          302 TNVN--ALTRDHKTALDIAEGL  321 (568)
Q Consensus       302 ~~~~--~~d~~G~T~L~~A~~~  321 (568)
                      ++..  ..+.+|.|+.+.+...
T Consensus       208 a~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          208 LENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             CGGGSSCCCCCTTTCCCCC---
T ss_pred             hhhhhcCCccchHHHHhhhccc
Confidence            9766  7889999998876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.4e-34  Score=279.76  Aligned_cols=226  Identities=29%  Similarity=0.318  Sum_probs=199.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCC
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG  209 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g  209 (568)
                      ++.+|.+|+||||+|+..|+.+++++|++    .+.++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g   79 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHG   79 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC
Confidence            35678999999999999999999999997    67776 67889999999999999999999999998 56788889999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHcCCC----ccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCC-CCCChHHHHH
Q 008358          210 KNALHFAARQGHVDVVKALLSKDP----QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD-KFGNTALHVA  284 (568)
Q Consensus       210 ~tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d-~~G~TpLh~A  284 (568)
                      .||||+|+..|+.+++++|++.++    ++ +..|..|+||||+|+..|+.+++++|++.|++ ++..| ..|+||||+|
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHH
Confidence            999999999999999999999987    44 67789999999999999999999999999999 66667 8899999999


Q ss_pred             HHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhh
Q 008358          285 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVH  364 (568)
Q Consensus       285 ~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~  364 (568)
                      +..|+.+++++|++ .|++++.+|..|+||||+|+..++    .+++++|+++|+..+..+..+.++++.++.....++.
T Consensus       158 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          158 VENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGL----LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence            99999999999999 799999999999999999998765    4789999999999888888888888877776666665


Q ss_pred             hhHh
Q 008358          365 TQLE  368 (568)
Q Consensus       365 ~~l~  368 (568)
                      +.+.
T Consensus       233 ~~l~  236 (241)
T 1k1a_A          233 RGKA  236 (241)
T ss_dssp             TC--
T ss_pred             hhhc
Confidence            5544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.3e-34  Score=290.11  Aligned_cols=254  Identities=26%  Similarity=0.255  Sum_probs=222.4

Q ss_pred             CCchHHHHHhhhhHHHHHHhhhcCcccccccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 008358          107 GAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNR-SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  185 (568)
Q Consensus       107 ~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~  185 (568)
                      .++|+.|+..++.++|+.||+.  ++++|.++. .|+||||+|+..|+.++|++|+++|+++ +..+..+.+|++.++..
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHHHHhc
Confidence            4578999999999999999976  567887765 5999999999999999999999999998 67889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccc---------cccCCCCCCHHHHHHhCCCH
Q 008358          186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA---------RRTDKKGQTALHMAVKGQSC  256 (568)
Q Consensus       186 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~~~~  256 (568)
                      ++..++..++.. +.+++..|..|.||||+|+..|+.+++++|+++|+++.         ...+..|.||||+|+..|+.
T Consensus       103 ~~~~~~~~~~~~-~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~  181 (337)
T 4g8k_A          103 GSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  181 (337)
T ss_dssp             TCHHHHHHHHTT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred             ccchhhHHhhhc-cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence            999999999987 66788899999999999999999999999999988752         23456799999999999999


Q ss_pred             HHHHHHHH-cCCccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHH
Q 008358          257 EVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK  331 (568)
Q Consensus       257 ~~v~~Ll~-~g~~~~~~~d~~G~TpLh~A~~~g~----~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~  331 (568)
                      +++++|++ .|++ ++.+|..|+|+||.++..+.    ..++++|++ .|+++|.+|.+|+||||+|+..+..    +++
T Consensus       182 ~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~----~~v  255 (337)
T 4g8k_A          182 EVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHL----GLV  255 (337)
T ss_dssp             HHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCH----HHH
T ss_pred             HHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhh----HHH
Confidence            99999996 5788 89999999999999886543    468889998 8999999999999999999998764    456


Q ss_pred             HHHHH-cCcccccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358          332 DCLAR-CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  370 (568)
Q Consensus       332 ~~L~~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  370 (568)
                      +.|+. .|+..+..+..++++++.++.....++.+.|-+.
T Consensus       256 ~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          256 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             HHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            66665 5788888888899999999999888888877654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-33  Score=271.41  Aligned_cols=210  Identities=27%  Similarity=0.293  Sum_probs=190.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCccc-cCcCCChHHHHHHH
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG-GLLEI-SRSNGKNALHFAAR  218 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~-~~~~~-~d~~g~tpLh~A~~  218 (568)
                      |+||||+|+..|+.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.+. .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            78999999999999999999999999877789999999999999999999999999952 33444 78899999999999


Q ss_pred             cCCHHHHHHHHcCC--CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          219 QGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      .|+.+++++|++.+  +++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999998  665 77899999999999999999999999999999 889999999999999999999999999


Q ss_pred             hcCCC-CCcccccCCCCCHHHHHhhCCCchhhHHHHHHHH-HcCcccccccCCChhHHHHHHH
Q 008358          297 LSLPD-TNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA-RCGAVRANELNQPRDELRKTVT  357 (568)
Q Consensus       297 l~~~g-~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~-~~ga~~~~~~~~~~~~l~~~~~  357 (568)
                      ++ .| ++++.+|..|+||||+|+..++.    +++++|+ ++|+..+..+..+.++++.+.+
T Consensus       160 l~-~g~~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          160 CG-LGKSAVNWQDKQGWTPLFHALAEGHG----DAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HT-TTCCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             Hh-cCcccccCcCCCCCCHHHHHHHcCCH----HHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            99 56 99999999999999999997754    7888888 8999988888888888776543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.9e-33  Score=270.20  Aligned_cols=223  Identities=26%  Similarity=0.253  Sum_probs=203.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      +..+.||||.|+..|+.++++.|++.++......|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHH
Confidence            345789999999999999999999998887788899999999999999999999999998 6678889999999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      ..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999987 77899999999999999999999999999999 8889999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHh
Q 008358          298 SLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLE  368 (568)
Q Consensus       298 ~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  368 (568)
                      + .|++++.+|..|+||||+|+..++    .+++++|+++|+..+..+..+.++++.+......++.+.|.
T Consensus       160 ~-~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          160 F-YKASTNIQDTEGNTPLHLACDEER----VEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             H-TTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred             h-cCCCccccCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence            9 899999999999999999998775    47889999999998888888888988776655555554443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.7e-34  Score=284.17  Aligned_cols=225  Identities=19%  Similarity=0.155  Sum_probs=196.1

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH  146 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh  146 (568)
                      .+..|..|.||||+|+..|+.+++++|++.                                  +.+++..  +|+||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~--~g~t~L~   67 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNA----------------------------------GALKNLL--ENEFPLH   67 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------------------------------TGGGSCC--TTCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhC----------------------------------CCCCCCC--CCCCHHH
Confidence            456778888888888888888888888852                                  3334444  4899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCC-ChHHHHHHHcCCHHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQGHVDVV  225 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv  225 (568)
                      +|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+..| .||||+|+..|+.+++
T Consensus        68 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v  145 (285)
T 3kea_A           68 QAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIV  145 (285)
T ss_dssp             HHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999998 67889999999999999999999999999 67788999999 8999999999999999


Q ss_pred             HHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChH-HHHHHHcCcHHHHHHHhcCCCCCc
Q 008358          226 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNV  304 (568)
Q Consensus       226 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~~~g~~~  304 (568)
                      ++|++++++....  ..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+..|+.+++++|++ .|+++
T Consensus       146 ~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~  221 (285)
T 3kea_A          146 SYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINI  221 (285)
T ss_dssp             HHHHTTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCS
T ss_pred             HHHHhCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence            9999999876221  2899999999999999999999999999 89999999998 999999999999999999 89999


Q ss_pred             ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 008358          305 NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE  344 (568)
Q Consensus       305 ~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  344 (568)
                      +.+|.       .|+..+    ..+++++|+++|+.....
T Consensus       222 ~~~~~-------~a~~~~----~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          222 YSANL-------ENVLLD----DAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             TTTTG-------GGGTTT----CHHHHHHHHHHHHHHTTC
T ss_pred             CCCCh-------hhhhcC----CHHHHHHHHHcCCCCCCc
Confidence            99984       333333    458999999999876443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-35  Score=297.30  Aligned_cols=239  Identities=16%  Similarity=0.160  Sum_probs=189.7

Q ss_pred             hhHhhhcCCCCChHhHHHHHcCCHHHHHHHHhc-CCccccc-------------cCCC----CchHHHHHhhhhHHHHHH
Q 008358           64 KYVKQVTGRHNDTELHLAAQRGDLGAVKQILYG-IDSQMVG-------------NLSG----AEFDTEVAEIRSSVVNEL  125 (568)
Q Consensus        64 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~~-------------~~~~----~~l~~a~~~~~~~~v~~L  125 (568)
                      ....+..+..|.|+++     |+.++|+.||+. .+++...             ...+    ...+.++..+..++++.|
T Consensus        42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l  116 (327)
T 1sw6_A           42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF  116 (327)
T ss_dssp             SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred             CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence            3344556788999988     999999999963 3322200             0011    123556666677788877


Q ss_pred             hhhcCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCC
Q 008358          126 LKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKDGGL  201 (568)
Q Consensus       126 l~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~---~~~v~~Ll~~~~~~  201 (568)
                      ++  .+.+++. +|..|+||||+|+..|+.++|++|+++|+++ +..|..|+||||+|+..|+   .++++.|++....+
T Consensus       117 ~~--~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~  193 (327)
T 1sw6_A          117 PN--TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  193 (327)
T ss_dssp             TT--SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             Hh--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence            74  4677888 8999999999999999999999999999998 6889999999999999998   78888888886677


Q ss_pred             ccccCcCCChHHHHHHH----cCCHHHHHHHHcC--------------------CCccccccCCCCCCHHHHHHhCCCHH
Q 008358          202 LEISRSNGKNALHFAAR----QGHVDVVKALLSK--------------------DPQLARRTDKKGQTALHMAVKGQSCE  257 (568)
Q Consensus       202 ~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~  257 (568)
                      ++..|..|+||||+|+.    .|+.+++++|++.                    +.++ +..|..|+||||.|+.     
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~-----  267 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD-----  267 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS-----
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH-----
Confidence            89999999999999999    9999999999987                    5555 6778999999999986     


Q ss_pred             HHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 008358          258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  321 (568)
Q Consensus       258 ~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~  321 (568)
                       +++|++++   ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|++.
T Consensus       268 -~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          268 -LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             -HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC-
T ss_pred             -HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhc
Confidence             89999984   77899999999999999999999999999 8999999999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4e-33  Score=261.99  Aligned_cols=192  Identities=30%  Similarity=0.339  Sum_probs=173.5

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      ..+.||||.|+..|+.+.++.|+..                                 .+.+++..|..|+||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~---------------------------------~~~~~~~~~~~g~t~L~~A~~~   49 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQD---------------------------------TTYQVDEVDTEGNTPLNIAVHN   49 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTC---------------------------------TTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHc---------------------------------CCCCCCCCCCCCCCHHHHHHHc
Confidence            4677999999999999999999852                                 2335677888999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  231 (568)
                      |+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|++.
T Consensus        50 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  128 (201)
T 3hra_A           50 NDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED  128 (201)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999998 678889999999999999999999999887888899999999999999999999999999999


Q ss_pred             CCccccccCCCCCCHHHHHHhCCC-----HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          232 DPQLARRTDKKGQTALHMAVKGQS-----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       232 ~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      ++...+..|..|+||||+|+..++     .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus       129 g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            844447889999999999999888     8999999999999 78899999999999999999999999998

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.5e-33  Score=266.14  Aligned_cols=198  Identities=25%  Similarity=0.318  Sum_probs=182.0

Q ss_pred             hcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHH
Q 008358           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIA  148 (568)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~A  148 (568)
                      ..|..|.||||.|+..|+.+++++|++.                                  +.+++.+|..|+||||+|
T Consensus        20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A   65 (223)
T 2f8y_A           20 QTDRTGETALHLAARYSRSDAAKRLLEA----------------------------------SADANIQDNMGRTPLHAA   65 (223)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHc----------------------------------CCCCCCcCCCCCCHHHHH
Confidence            3477899999999999999999999852                                  345677889999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHH
Q 008358          149 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL  228 (568)
Q Consensus       149 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  228 (568)
                      +..|+.+++++|+++++......+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|
T Consensus        66 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (223)
T 2f8y_A           66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVL  144 (223)
T ss_dssp             HHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999855578899999999999999999999999997 667888999999999999999999999999


Q ss_pred             HcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358          229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  304 (568)
Q Consensus       229 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  304 (568)
                      ++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+..
T Consensus       145 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~  217 (223)
T 2f8y_A          145 LKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR  217 (223)
T ss_dssp             HHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred             HHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence            9999987 77899999999999999999999999999999 88999999999999999999999999999 67754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.2e-33  Score=273.01  Aligned_cols=200  Identities=25%  Similarity=0.319  Sum_probs=177.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358          136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  212 (568)
Q Consensus       136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  212 (568)
                      .+|.+|+||||+|+..|+.++++.|++.++.   ..+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence            4688999999999999999999999998763   2367888999999999999999999999988 67788899999999


Q ss_pred             HHHHHHcCCHHHHHHHHcCCCc-----cccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCC-CCChHHHHHHH
Q 008358          213 LHFAARQGHVDVVKALLSKDPQ-----LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATR  286 (568)
Q Consensus       213 Lh~A~~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~  286 (568)
                      ||+|+..|+.+++++|++.+++     ..+..|..|+||||+|+..|+.+++++|+++|++ ++.+|. .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999864     2467788999999999999999999999999999 778887 99999999999


Q ss_pred             cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358          287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  342 (568)
Q Consensus       287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  342 (568)
                      .|+.+++++|++ .|++++.+|..|+||||+|+..++    .+++++|+++|+...
T Consensus       161 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~----~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPS----TRIQQQLGQLTLENL  211 (236)
T ss_dssp             TTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSC----HHHHHHHHTTSCGGG
T ss_pred             cCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCc----hHHHHHHHHcchhhh
Confidence            999999999999 799999999999999999998765    478999999999765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-33  Score=277.85  Aligned_cols=214  Identities=21%  Similarity=0.196  Sum_probs=166.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      +..|.||||.|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence            345667777777777777777777777776 55667777777777777777777777776 5566667777777777777


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH--------------------------cCCcccc
Q 008358          218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--------------------------ADAAIVM  271 (568)
Q Consensus       218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~--------------------------~g~~~~~  271 (568)
                      ..|+.+++++|+++++++ +..|..|.||||+|+..++.++++.++.                          .+.....
T Consensus       115 ~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence            777777777777777766 5667777777777777777777666554                          2333234


Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhH
Q 008358          272 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE  351 (568)
Q Consensus       272 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  351 (568)
                      ..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.    +++++|+++|+..+..+..+.++
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKE----EACRILVENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCH----HHHHHHHHcCCCCCCcCCCCCCH
Confidence            467889999999999999999999999 8999999999999999999998764    78899999999988888888888


Q ss_pred             HHHHHHhh
Q 008358          352 LRKTVTQI  359 (568)
Q Consensus       352 l~~~~~~~  359 (568)
                      ++.+.++.
T Consensus       269 l~~A~~~~  276 (299)
T 1s70_B          269 FDVADEDI  276 (299)
T ss_dssp             TTSCCSGG
T ss_pred             HHHHHHHH
Confidence            87665443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-33  Score=278.93  Aligned_cols=190  Identities=18%  Similarity=0.203  Sum_probs=169.7

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      .+|.||||+|+..|+.+++++|++                                  .+.+++.+|..|+||||+|+..
T Consensus        60 ~~g~t~L~~A~~~g~~~~v~~Ll~----------------------------------~ga~~~~~d~~g~t~L~~A~~~  105 (285)
T 3kea_A           60 LENEFPLHQAATLEDTKIVKILLF----------------------------------SGLDDSQFDDKGNTALYYAVDS  105 (285)
T ss_dssp             CTTCCHHHHHTTSSSCHHHHHHHH----------------------------------TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----------------------------------CCCCCCCcCCCCCcHHHHHHHc
Confidence            369999999999999999999995                                  2455777899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCccccCc-CCChHHHHHHHcCCHHHHHHHH
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSN-ATPLVSAATRGHTAVVNELLSKDGGLLEISRS-NGKNALHFAARQGHVDVVKALL  229 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll  229 (568)
                      |+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|++++...   .+. .|.||||+|+..|+.+++++|+
T Consensus       106 g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          106 GNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             TCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHH
Confidence            9999999999999998 6778888 89999999999999999999996543   233 8999999999999999999999


Q ss_pred             cCCCccccccCCCCCCH-HHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccccc
Q 008358          230 SKDPQLARRTDKKGQTA-LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT  308 (568)
Q Consensus       230 ~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d  308 (568)
                      ++|+++ +..|..|+|| ||+|+..|+.+++++|+++|++ ++.+|       +.|+..|+.+++++|++ .|++++..+
T Consensus       182 ~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~-~g~~~~~~~  251 (285)
T 3kea_A          182 DYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIE-KHVEYKSDS  251 (285)
T ss_dssp             HHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHH-HHHHHTTCT
T ss_pred             HcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHH-cCCCCCCcc
Confidence            999987 7889999998 9999999999999999999999 67766       35678999999999999 788877655


Q ss_pred             C
Q 008358          309 R  309 (568)
Q Consensus       309 ~  309 (568)
                      .
T Consensus       252 ~  252 (285)
T 3kea_A          252 Y  252 (285)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.9e-32  Score=253.99  Aligned_cols=194  Identities=23%  Similarity=0.282  Sum_probs=176.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358          139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  218 (568)
Q Consensus       139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  218 (568)
                      ..+.||||.|+..|+.++++.|+..++...+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence            46889999999999999999999998833477899999999999999999999999998 66788899999999999999


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc-----HHHH
Q 008358          219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-----TEIV  293 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~-----~~iv  293 (568)
                      .|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.|...++.+|..|+||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            99999999999655544488899999999999999999999999999943389999999999999999998     9999


Q ss_pred             HHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 008358          294 TELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  338 (568)
Q Consensus       294 ~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~g  338 (568)
                      ++|++ .|++++.+|..|+||||+|+..++.    +++++|+++|
T Consensus       162 ~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLME-NGADQSIKDNSGRTAMDYANQKGYT----EISKILAQYN  201 (201)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHTCC
T ss_pred             HHHHH-CCCCCCccCCCCCCHHHHHHHcCCH----hHHHHHHhcC
Confidence            99999 8999999999999999999987654    7888888776

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.6e-33  Score=275.00  Aligned_cols=216  Identities=19%  Similarity=0.231  Sum_probs=163.1

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCccccc----ccCCCCCc
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT----RKNRSGFD  143 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~----~~~~~g~T  143 (568)
                      +..|..|.||||.||+.|+.++|+.|++...                              ..+.+++    ..|..|+|
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------------------~~~~~~~~~~~~~~~~g~t   56 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQ------------------------------RSKKRLTDSEFKDPETGKT   56 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHH------------------------------HSCCCTTSGGGSCTTTCCC
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHh------------------------------hcccccCCcccccCcCCCC
Confidence            4467889999999999999999999985210                              0111222    35788999


Q ss_pred             HHHHHHHc---CCHHHHHHHHhcCCCCc----------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCc---
Q 008358          144 PLHIAAVQ---GHHAIVQVLLDHDPSLS----------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS---  207 (568)
Q Consensus       144 pLh~Aa~~---g~~~iv~~Ll~~~~~~~----------~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~---  207 (568)
                      |||+|+..   |+.++|++|+++|++..          ...|..|.||||+|+..|+.+++++|+++ +.+++..+.   
T Consensus        57 pL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~  135 (273)
T 2pnn_A           57 CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDF  135 (273)
T ss_dssp             HHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGG
T ss_pred             HHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccc
Confidence            99999987   99999999999986531          12456899999999999999999999988 566777776   


Q ss_pred             -----------CCChHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCCCHHHHHHhCCC---------HHHHHHHHH
Q 008358          208 -----------NGKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLE  264 (568)
Q Consensus       208 -----------~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~  264 (568)
                                 .|.||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..|+         .+++++|++
T Consensus       136 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~  214 (273)
T 2pnn_A          136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI  214 (273)
T ss_dssp             GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence                       78999999999999999999999   77877 7788899999999998877         788999999


Q ss_pred             cCCccc------cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC-CcccccCCCCCHHH
Q 008358          265 ADAAIV------MLPDKFGNTALHVATRKKRTEIVTELLSLPDT-NVNALTRDHKTALD  316 (568)
Q Consensus       265 ~g~~~~------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~-~~~~~d~~G~T~L~  316 (568)
                      +|+++.      +.+|..|+||||+|+..|+.+++++|++ .|+ |+......+.+|-|
T Consensus       215 ~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTC--------------
T ss_pred             hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhccC
Confidence            888832      3588889999999999999999999998 677 77777766666543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-33  Score=273.76  Aligned_cols=214  Identities=23%  Similarity=0.260  Sum_probs=169.5

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-------cccCCCCCCcHHHHHHHcCCHH-HHHHHHHcCCCCccccCc
Q 008358          136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL-------SQTTGPSNATPLVSAATRGHTA-VVNELLSKDGGLLEISRS  207 (568)
Q Consensus       136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-------~~~~~~~g~tpL~~Aa~~g~~~-~v~~Ll~~~~~~~~~~d~  207 (568)
                      .+|..+.+||+.|+..|+.++|++|++.+++.       ....+..|.|||+.|+..++.+ ++++|++. +.+++..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C-CCCTTCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCC
Confidence            45677889999999999999999999998753       2456678999999999988764 77888877 678899999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358          208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  287 (568)
Q Consensus       208 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~  287 (568)
                      +|+||||+|+..|+.+++++|++.++++ +..+.+|.||+|.|+..++.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence            9999999999999999999999999987 77899999999999999999999999999999 899999999999999999


Q ss_pred             CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHH
Q 008358          288 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  357 (568)
Q Consensus       288 g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  357 (568)
                      |+.+++++|++ .|+++|.+|..|+||||+|+..++.    +++++|+++|++.+..+..++++++.+.+
T Consensus       163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHV----FVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence            99999999999 8999999999999999999998764    78999999999998888888898887654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=1.6e-31  Score=257.60  Aligned_cols=229  Identities=20%  Similarity=0.193  Sum_probs=206.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL  213 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  213 (568)
                      ++..|..|.||||.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+.......+..|.|||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            3456888999999999999999999999999998 678899999999999999999999999997665556666799999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc-HHH
Q 008358          214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEI  292 (568)
Q Consensus       214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~-~~i  292 (568)
                      |+|+..|+.+++++|++.++++ +..|..|.||||.|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHH
Confidence            9999999999999999999988 77899999999999999999999999999999 88899999999999997766 789


Q ss_pred             HHHHhcCCCCCcccccC-CCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358          293 VTELLSLPDTNVNALTR-DHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  370 (568)
Q Consensus       293 v~~Ll~~~g~~~~~~d~-~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  370 (568)
                      +++|++ .|++++..+. .|.||||+|+..++.    +++++|+++|+..+.....+.+++..++.....++.+.|.+.
T Consensus       159 ~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          159 TRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNT----TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCH----HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHh-cCCCcchhhccCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            999998 8999999997 999999999987654    788999999999988888899999999888877777666543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=1.4e-31  Score=244.40  Aligned_cols=160  Identities=34%  Similarity=0.460  Sum_probs=145.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCH
Q 008358          143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  222 (568)
Q Consensus       143 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  222 (568)
                      ++|+.||+.|+.++|+.|+++|+++ +..|..|.||||+|+..++.++++.|++. +.+++.+|.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCH
Confidence            5799999999999999999999998 67899999999999999999999999988 677889999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 008358          223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  302 (568)
Q Consensus       223 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  302 (568)
                      +++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus        84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA  160 (169)
T 4gpm_A           84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGG  160 (169)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred             HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence            9999999999997 78899999999999999999999999999999 88999999999999999999999999999 899


Q ss_pred             Ccccc
Q 008358          303 NVNAL  307 (568)
Q Consensus       303 ~~~~~  307 (568)
                      +++..
T Consensus       161 ~ie~~  165 (169)
T 4gpm_A          161 WLEHH  165 (169)
T ss_dssp             -----
T ss_pred             CcCCC
Confidence            98753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.5e-32  Score=265.17  Aligned_cols=194  Identities=25%  Similarity=0.279  Sum_probs=143.2

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccc----cCCCCCcHHHHH
Q 008358           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTR----KNRSGFDPLHIA  148 (568)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~----~~~~g~TpLh~A  148 (568)
                      .|.||||.||+.|+.+.|+.|++                            .|+  ..+.+++.    +|..|+||||+|
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~----------------------------~l~--~~g~~i~~~~~~~d~~g~t~L~~A   50 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLE----------------------------YLR--WNSKYLTDSAYTEGSTGKTCLMKA   50 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHH----------------------------HHH--HHTCCTTSGGGSBTTTTBCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHH----------------------------HHH--HcCCCcccccccCCCCCCCHHHHH
Confidence            37799999999999987766653                            122  12445666    789999999999


Q ss_pred             HHc---CCHHHHHHHHhcCCCCccc----------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcC-------
Q 008358          149 AVQ---GHHAIVQVLLDHDPSLSQT----------TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-------  208 (568)
Q Consensus       149 a~~---g~~~iv~~Ll~~~~~~~~~----------~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------  208 (568)
                      +..   |+.+++++|+++|++....          .|..|.||||+|+..|+.+++++|+++ +.+++..+..       
T Consensus        51 ~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~  129 (256)
T 2etb_A           51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQ  129 (256)
T ss_dssp             HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCS
T ss_pred             HHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccc
Confidence            999   9999999999998876322          246688888888888888888888887 5566666665       


Q ss_pred             ------CChHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCCCHHHHHHh--CCCHH-------HHHHHHHcCCccc
Q 008358          209 ------GKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVK--GQSCE-------VVKLLLEADAAIV  270 (568)
Q Consensus       209 ------g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~g~~~~  270 (568)
                            |.||||+|+..|+.+++++|++   .|+++ +..|.+|+||||+|+.  .++.+       ++++|+++|+++.
T Consensus       130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence                  7777777777777777777777   66665 5666777777777776  66666       7777777776621


Q ss_pred             ------cCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          271 ------MLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       271 ------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                            +.+|..|+||||+|+..|+.+++++|++
T Consensus       209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  242 (256)
T 2etb_A          209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ  242 (256)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence                  6667777777777777777777777766

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.5e-32  Score=265.96  Aligned_cols=196  Identities=24%  Similarity=0.252  Sum_probs=172.8

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHhcCCCCcc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCc-------
Q 008358          140 SGFDPLHIAAVQGHHA----IVQVLLDHDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL-------  202 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~-------  202 (568)
                      .|+||||.|+..|+.+    ++++|++.|.+++.   ..|..|.||||+|+..   |+.+++++|++.+....       
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4789999999999997    66777789999843   3799999999999999   99999999998843221       


Q ss_pred             ---cccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCC-------------CCCHHHHHHhCCCHHHHHHHHH--
Q 008358          203 ---EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-------------GQTALHMAVKGQSCEVVKLLLE--  264 (568)
Q Consensus       203 ---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~v~~Ll~--  264 (568)
                         ...|..|.||||+|+..|+.+++++|+++|+++ +..|..             |+||||+|+..|+.+++++|++  
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence               123467999999999999999999999999987 566665             9999999999999999999999  


Q ss_pred             -cCCccccCCCCCCChHHHHHHH--cCcHH-------HHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCchhh
Q 008358          265 -ADAAIVMLPDKFGNTALHVATR--KKRTE-------IVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSSEEA  327 (568)
Q Consensus       265 -~g~~~~~~~d~~G~TpLh~A~~--~g~~~-------iv~~Ll~~~g~~~-------~~~d~~G~T~L~~A~~~~~~~~~  327 (568)
                       .|++ ++.+|.+|+||||+|+.  .++.+       ++++|++ .|+++       +.+|..|+||||+|+..++.   
T Consensus       160 ~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---  234 (256)
T 2etb_A          160 HQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKI---  234 (256)
T ss_dssp             SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH---
T ss_pred             ccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCH---
Confidence             8999 89999999999999999  88888       9999999 89999       99999999999999998764   


Q ss_pred             HHHHHHHHHcCcccc
Q 008358          328 SEIKDCLARCGAVRA  342 (568)
Q Consensus       328 ~~i~~~L~~~ga~~~  342 (568)
                       +++++|+++|+...
T Consensus       235 -~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          235 -EIFRHILQREFSGA  248 (256)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHhCCCCCC
Confidence             78888988887643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.5e-32  Score=266.33  Aligned_cols=200  Identities=20%  Similarity=0.227  Sum_probs=172.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCcc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC---
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGG---  200 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~---~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~---  200 (568)
                      .+..|..|+||||+|+..|+.++|+.|++    .+.++..   ..|..|.||||+|+..   |+.+++++|++.+..   
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            45678899999999999999999998887    4555422   4578999999999987   999999999998432   


Q ss_pred             -------CccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCC--------------CCCCHHHHHHhCCCHHHH
Q 008358          201 -------LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK--------------KGQTALHMAVKGQSCEVV  259 (568)
Q Consensus       201 -------~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~v  259 (568)
                             .....|..|.||||+|+..|+.+++++|+++|+++ +..+.              .|+||||+|+..|+.+++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                   11225678999999999999999999999999988 55565              799999999999999999


Q ss_pred             HHHHH---cCCccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCcc-------cccCCCCCHHHHHhh
Q 008358          260 KLLLE---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNVN-------ALTRDHKTALDIAEG  320 (568)
Q Consensus       260 ~~Ll~---~g~~~~~~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~~~-------~~d~~G~T~L~~A~~  320 (568)
                      ++|++   .|++ ++.+|.+|+||||+|+..|+         .+++++|++ .|++++       .+|..|+||||+|+.
T Consensus       165 ~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          165 KFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             HHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHH
Confidence            99999   8999 88999999999999999988         899999999 899987       599999999999999


Q ss_pred             CCCchhhHHHHHHHHHcCcc
Q 008358          321 LPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       321 ~~~~~~~~~i~~~L~~~ga~  340 (568)
                      .++.    +++++|+++|+.
T Consensus       243 ~g~~----~iv~~Ll~~ga~  258 (273)
T 2pnn_A          243 SGKI----GVLAYILQREIH  258 (273)
T ss_dssp             TTCH----HHHHHHHHHHTC
T ss_pred             hChH----HHHHHHHHCCCC
Confidence            8764    789999999994

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3e-30  Score=235.57  Aligned_cols=157  Identities=34%  Similarity=0.523  Sum_probs=144.1

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHH
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA  155 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~  155 (568)
                      ++|+.||+.|+.++|+.||+                                  .+++++.+|..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~----------------------------------~Gadvn~~d~~g~t~l~~a~~~~~~~   51 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE----------------------------------NGADVNASDSDGRTPLHHAAENGHKE   51 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH----------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH----------------------------------CCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            47999999999999999985                                  35567889999999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc
Q 008358          156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  235 (568)
Q Consensus       156 iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  235 (568)
                      +++.|+++|+++ +..|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+..|+.+++++|+++|+++
T Consensus        52 ~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~  129 (169)
T 4gpm_A           52 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV  129 (169)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            999999999998 77899999999999999999999999998 6778999999999999999999999999999999998


Q ss_pred             ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc
Q 008358          236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI  269 (568)
Q Consensus       236 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  269 (568)
                       +.+|.+|+||||+|++.|+.+++++|+++|+++
T Consensus       130 -~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          130 -NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence             788999999999999999999999999999984

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=256.37  Aligned_cols=191  Identities=26%  Similarity=0.334  Sum_probs=163.5

Q ss_pred             CchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH----
Q 008358          108 AEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA----  183 (568)
Q Consensus       108 ~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa----  183 (568)
                      ++++.++..++.+.++.++....+..++.+|.+|+||||+|+..|+.++|++|++.|+...+..|..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            3556666667777777766655555678889999999999999999999999999998334788899999999999    


Q ss_pred             -HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358          184 -TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  262 (568)
Q Consensus       184 -~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  262 (568)
                       ..++.++++.|++. +...+..+..|.||||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+..|+.+++++|
T Consensus       158 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence             66889999999988 4566777888999999999999999999999999987 77899999999999999999999999


Q ss_pred             HH-cCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC
Q 008358          263 LE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD  301 (568)
Q Consensus       263 l~-~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  301 (568)
                      ++ .|++ ++.+|.+|+||||+|+..|+.+++++|++..+
T Consensus       236 l~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          236 LAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            99 7888 88899999999999999999999999998443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.4e-31  Score=259.45  Aligned_cols=198  Identities=22%  Similarity=0.193  Sum_probs=168.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCccc---CCCCCCcHHHHHH---HcCCHHHHHHHHHcCC--------
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQT---TGPSNATPLVSAA---TRGHTAVVNELLSKDG--------  199 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~---~~~~g~tpL~~Aa---~~g~~~~v~~Ll~~~~--------  199 (568)
                      +..|+|+||.|++.|+.++++.|++    .++++...   .|..|.||||+|+   ..|+.+++++|++.+.        
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            4578899999999999995555544    88887422   2477999999999   6799999999998743        


Q ss_pred             --CCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccC--------------CCCCCHHHHHHhCCCHHHHHHHH
Q 008358          200 --GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD--------------KKGQTALHMAVKGQSCEVVKLLL  263 (568)
Q Consensus       200 --~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll  263 (568)
                        ...+..|..|.||||+|+..|+.+++++|+++|+++ +..|              ..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence              223445568999999999999999999999999987 5556              58999999999999999999999


Q ss_pred             H---cCCccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCc
Q 008358          264 E---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSS  324 (568)
Q Consensus       264 ~---~g~~~~~~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~~-------~~~d~~G~T~L~~A~~~~~~  324 (568)
                      +   .|++ ++.+|..|+||||+|+..++         .+++++|++ .|+++       +.+|.+|+||||+|+..++.
T Consensus       161 ~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          161 ENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             hccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            9   8898 88999999999999998887         799999999 89998       78999999999999998764


Q ss_pred             hhhHHHHHHHHHcCcccc
Q 008358          325 EEASEIKDCLARCGAVRA  342 (568)
Q Consensus       325 ~~~~~i~~~L~~~ga~~~  342 (568)
                          +++++|+++|+...
T Consensus       239 ----~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          239 ----GIFQHIIRREIADA  252 (260)
T ss_dssp             ----HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhCCCcc
Confidence                78888998887654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=7.8e-31  Score=256.90  Aligned_cols=201  Identities=25%  Similarity=0.265  Sum_probs=168.9

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCccccccc----CCCCCcHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRK----NRSGFDPLH  146 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~----~~~g~TpLh  146 (568)
                      +..|.|+||.||+.|+.+.++.|++                            .++.  .+.+++..    |..|+||||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~----------------------------~l~~--~~~~~~~~~~~~~~~g~t~L~   51 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLS----------------------------FLLT--HKKRLTDEEFREPSTGKTCLP   51 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHH----------------------------HHHH--HTCCTTSGGGSCTTTCCCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHH----------------------------HHHh--cCCCcchhhhhccCCCCcHHH
Confidence            4567899999999999998877774                            1111  12233333    477999999


Q ss_pred             HHH---HcCCHHHHHHHHhcCCCC----------cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-------
Q 008358          147 IAA---VQGHHAIVQVLLDHDPSL----------SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-------  206 (568)
Q Consensus       147 ~Aa---~~g~~~iv~~Ll~~~~~~----------~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-------  206 (568)
                      +|+   ..|+.+++++|++.|++.          ....|..|.||||+|+..|+.+++++|+++ +.+++..+       
T Consensus        52 ~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~  130 (260)
T 3jxi_A           52 KALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQP  130 (260)
T ss_dssp             HHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSS
T ss_pred             HHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCc
Confidence            999   779999999999987542          133455899999999999999999999998 56777777       


Q ss_pred             -------cCCChHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCCCHHHHHHhCCC---------HHHHHHHHHcCC
Q 008358          207 -------SNGKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADA  267 (568)
Q Consensus       207 -------~~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~  267 (568)
                             ..|.||||+|+..|+.+++++|++   .+.++ +.+|..|+||||+|+..++         .+++++|+++|+
T Consensus       131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  209 (260)
T 3jxi_A          131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA  209 (260)
T ss_dssp             SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc
Confidence                   589999999999999999999999   88887 7889999999999998777         799999999999


Q ss_pred             ccc------cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358          268 AIV------MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  304 (568)
Q Consensus       268 ~~~------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  304 (568)
                      ++.      +.+|..|+||||+|+..|+.+++++|++ +|.+.
T Consensus       210 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~  251 (260)
T 3jxi_A          210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR-REIAD  251 (260)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHHHH
T ss_pred             ccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCCc
Confidence            832      6799999999999999999999999998 55543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=9.9e-30  Score=232.82  Aligned_cols=170  Identities=23%  Similarity=0.229  Sum_probs=151.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      +.||||.|+..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCC
Confidence            468999999999999999999999886678899999999999999999999999988 5678888999999999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 008358          221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  300 (568)
Q Consensus       221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  300 (568)
                      +.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~  157 (172)
T 3v30_A           81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-H  157 (172)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence            999999999999987 77899999999999999999999999999999 88899999999999999999999999999 8


Q ss_pred             CCCcccccCCCCCH
Q 008358          301 DTNVNALTRDHKTA  314 (568)
Q Consensus       301 g~~~~~~d~~G~T~  314 (568)
                      ++++...|..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            99999999888887

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.2e-30  Score=264.86  Aligned_cols=259  Identities=14%  Similarity=0.062  Sum_probs=195.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccc---------------c
Q 008358           74 NDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTR---------------K  137 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~---------------~  137 (568)
                      +.+|+|    ....++|++|++ +.+.+..+..+.++++     |+.++++.||+.+...+.+.               +
T Consensus        23 ~~~~~~----~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~   93 (327)
T 1sw6_A           23 TAGPII----TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG   93 (327)
T ss_dssp             --CCEE----ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------
T ss_pred             cccchh----hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccc
Confidence            335665    355577999997 4555555555666655     89999999998764432210               1


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      .....+.+|+|+..+..+++++|++.|.+++...|..|.||||+|+..|+.+++++|+++ +.+++..|.+|+||||+|+
T Consensus        94 ~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~  172 (327)
T 1sw6_A           94 GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAV  172 (327)
T ss_dssp             ----------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHH
T ss_pred             cCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH
Confidence            111223458888888999999999999999544899999999999999999999999999 6788999999999999999


Q ss_pred             HcCC---HHHHHHHHcCCCccccccCCCCCCHHHHHHh----CCCHHHHHHHHHc--------------------CCccc
Q 008358          218 RQGH---VDVVKALLSKDPQLARRTDKKGQTALHMAVK----GQSCEVVKLLLEA--------------------DAAIV  270 (568)
Q Consensus       218 ~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~--------------------g~~~~  270 (568)
                      ..|+   .++++.|++.+....+..|..|+||||+|+.    .|+.+++++|++.                    |++ +
T Consensus       173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~  251 (327)
T 1sw6_A          173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-P  251 (327)
T ss_dssp             HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred             HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-c
Confidence            9998   6788888887744448889999999999999    8999999999987                    667 7


Q ss_pred             cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChh
Q 008358          271 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD  350 (568)
Q Consensus       271 ~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~  350 (568)
                      +.+|..|+||||+|+.      +++|++ .  ++|.+|.+|+||||+|+..++    .+++++|+++|++.+..+..+++
T Consensus       252 ~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~----~~~v~~Ll~~Gad~~~~d~~G~T  318 (327)
T 1sw6_A          252 NDKNGERKDSILENLD------LKWIIA-N--MLNAQDSNGDTCLNIAARLGN----ISIVDALLDYGADPFIANKSGLR  318 (327)
T ss_dssp             --------CHHHHHCS------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCC----HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccccCCChhHHHHH------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCC
Confidence            8899999999999985      888988 3  689999999999999999765    48999999999999888888888


Q ss_pred             HHHHHH
Q 008358          351 ELRKTV  356 (568)
Q Consensus       351 ~l~~~~  356 (568)
                      +++.++
T Consensus       319 pL~~A~  324 (327)
T 1sw6_A          319 PVDFGA  324 (327)
T ss_dssp             GGGGTC
T ss_pred             HHHHHH
Confidence            876543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=5.3e-29  Score=232.33  Aligned_cols=161  Identities=24%  Similarity=0.289  Sum_probs=149.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL  213 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  213 (568)
                      ++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence            5678999999999999999999999999999987 67788999999999999999999999998 567888899999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHH
Q 008358          214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV  293 (568)
Q Consensus       214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv  293 (568)
                      |+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHH
Confidence            9999999999999999999887 77899999999999999999999999999999 888999999999999999999999


Q ss_pred             HHHhc
Q 008358          294 TELLS  298 (568)
Q Consensus       294 ~~Ll~  298 (568)
                      ++|++
T Consensus       184 ~~Ll~  188 (192)
T 2rfm_A          184 KIFTE  188 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=251.58  Aligned_cols=193  Identities=25%  Similarity=0.278  Sum_probs=175.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC-CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH--
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA--  217 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--  217 (568)
                      +++++|.|+..|+.+.++.+++.+.+ ..+..|..|.||||+|+..|+.+++++|++.+..+++..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            45789999999999999999987655 126788999999999999999999999999976689999999999999999  


Q ss_pred             ---HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHH
Q 008358          218 ---RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  294 (568)
Q Consensus       218 ---~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~  294 (568)
                         ..++.++++.|++.+... +..|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               668899999999999776 67788999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 008358          295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  339 (568)
Q Consensus       295 ~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga  339 (568)
                      +|++..|++++.+|.+|+||||+|+..++.    +++++|++++.
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~----~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQS----EIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHHCC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCH----HHHHHHHhccC
Confidence            999978999999999999999999987654    67777776653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=8.5e-29  Score=224.06  Aligned_cols=159  Identities=25%  Similarity=0.325  Sum_probs=147.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  219 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  219 (568)
                      ...||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+. |+.+++++|+++ +.+++..|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHc
Confidence            4569999999999999999999999998 6788999999999999 999999999998 667888999999999999999


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358          220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  299 (568)
Q Consensus       220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  299 (568)
                      |+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|++.++.+|..|+||||+|+..|+.+++++|++ 
T Consensus        81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-  158 (162)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence            9999999999999887 77899999999999999999999999999998778999999999999999999999999999 


Q ss_pred             CCCC
Q 008358          300 PDTN  303 (568)
Q Consensus       300 ~g~~  303 (568)
                      .|+|
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            7775

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.7e-28  Score=224.55  Aligned_cols=170  Identities=24%  Similarity=0.320  Sum_probs=148.5

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH  153 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~  153 (568)
                      +.||||.||..|+.+.++.|++..                                 ...++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~---------------------------------~~~~~~~~~~g~t~L~~A~~~~~   48 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKG---------------------------------DNLVNKPDERGFTPLIWASAFGE   48 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTC---------------------------------SGGGGCCCTTSCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcC---------------------------------cccccCCCCCCCCHHHHHHHcCC
Confidence            458999999999999999999632                                 22356778899999999999999


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCC
Q 008358          154 HAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP  233 (568)
Q Consensus       154 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  233 (568)
                      .+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        49 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  126 (172)
T 3v30_A           49 IETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA  126 (172)
T ss_dssp             HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999998 67889999999999999999999999988 66788999999999999999999999999999999


Q ss_pred             ccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChH
Q 008358          234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA  280 (568)
Q Consensus       234 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~Tp  280 (568)
                      ++ +..|..|+||||+|+..|+.+++++|++++++ ....+..|.||
T Consensus       127 ~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~-~~~~~~~~~~p  171 (172)
T 3v30_A          127 DL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPADP  171 (172)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-HSCC-------
T ss_pred             Cc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH-HhcccCCCCCC
Confidence            97 77899999999999999999999999999998 67778888887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=5e-28  Score=220.33  Aligned_cols=155  Identities=27%  Similarity=0.344  Sum_probs=130.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  219 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  219 (568)
                      .|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence            4778888888888888888888888776 66788888888888888888888888887 566777788888888888888


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      |+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            8888888888888877 66788888888888888888888888888888 67788888888888888888888888877

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=6.3e-28  Score=220.30  Aligned_cols=157  Identities=29%  Similarity=0.407  Sum_probs=143.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      ...+.|+||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence            456778999999999999999999999998 67788999999999999999999999988 5677888999999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      ..|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            999999999999999887 77889999999999999999999999999999 7889999999999999999999999998


Q ss_pred             c
Q 008358          298 S  298 (568)
Q Consensus       298 ~  298 (568)
                      +
T Consensus       167 ~  167 (169)
T 2y1l_E          167 K  167 (169)
T ss_dssp             T
T ss_pred             H
Confidence            7

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=5e-28  Score=225.74  Aligned_cols=166  Identities=24%  Similarity=0.277  Sum_probs=152.8

Q ss_pred             hhHhhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCc
Q 008358           64 KYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFD  143 (568)
Q Consensus        64 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~T  143 (568)
                      ..+.+..|..|.||||.|+..|+.+++++|++.                                  +.+++.+|..|+|
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------~~~~~~~~~~g~t   70 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN----------------------------------FDKLEDKDIEGST   70 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH----------------------------------HCCTTCCCTTSCC
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh----------------------------------ccccccccccCcc
Confidence            455677899999999999999999999999952                                  3346677889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHH
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  223 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  223 (568)
                      |||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+
T Consensus        71 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~  148 (192)
T 2rfm_A           71 ALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSE  148 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999998 67889999999999999999999999998 6778899999999999999999999


Q ss_pred             HHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC
Q 008358          224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  266 (568)
Q Consensus       224 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  266 (568)
                      ++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+
T Consensus       149 ~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          149 IVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999997 788999999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.1e-28  Score=218.91  Aligned_cols=159  Identities=26%  Similarity=0.334  Sum_probs=144.9

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      ...||||.|+..|+.+++++|++                                  .+.+++.+|..|+||||+|+. |
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~----------------------------------~~~~~~~~~~~g~t~L~~A~~-~   48 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ----------------------------------NNVNVNAQNGFGRTALQVMKL-G   48 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT----------------------------------SCCCTTCCCTTSCCHHHHCCS-S
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh----------------------------------CCCCccccCccCccHHHHHHc-C
Confidence            34589999999999999999985                                  234567788999999999999 9


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD  232 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  232 (568)
                      +.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++++
T Consensus        49 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           49 NPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence            999999999999998 67889999999999999999999999998 5778899999999999999999999999999999


Q ss_pred             CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       233 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                      ++..+..|..|+||||+|+..|+.+++++|+++|++
T Consensus       127 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            987688999999999999999999999999999975

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.3e-28  Score=223.59  Aligned_cols=168  Identities=23%  Similarity=0.326  Sum_probs=115.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  219 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  219 (568)
                      ++.++||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHc
Confidence            4566777777777777777777775544456666777777777777777777777766 455666667777777777777


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358          220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  299 (568)
Q Consensus       220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  299 (568)
                      |+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ 
T Consensus        83 ~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~-  159 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK-  159 (179)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-
Confidence            7777777777777665 55667777777777777777777777777776 66667777777777777777777777776 


Q ss_pred             CCCCcccccCCC
Q 008358          300 PDTNVNALTRDH  311 (568)
Q Consensus       300 ~g~~~~~~d~~G  311 (568)
                      .|++++..+.++
T Consensus       160 ~g~~~~~~~~~~  171 (179)
T 3f6q_A          160 MGQNLNRIPYKD  171 (179)
T ss_dssp             TTCCCSCBCCCC
T ss_pred             hhcCcccCCccc
Confidence            677766655443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.1e-27  Score=218.01  Aligned_cols=161  Identities=24%  Similarity=0.321  Sum_probs=148.4

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      .|.||||.|+..|+.+++++|++.                                  +.+++.+|..|+||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~----------------------------------~~~~~~~~~~g~t~L~~A~~~~   47 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ----------------------------------ENVINHTDEEGFTPLMWAAAHG   47 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH----------------------------------SSCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc----------------------------------CCCcCCCCCCCCCHHHHHHHCC
Confidence            578999999999999999999952                                  3446778899999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD  232 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  232 (568)
                      +.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++++
T Consensus        48 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (167)
T 3v31_A           48 QIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG  125 (167)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999998 67889999999999999999999999998 6678889999999999999999999999999999


Q ss_pred             CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccc
Q 008358          233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV  270 (568)
Q Consensus       233 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~  270 (568)
                      +++ +..|..|+||||+|+..|+.+++++|++++.++.
T Consensus       126 ~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          126 ADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            988 7789999999999999999999999999987743

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.4e-27  Score=214.25  Aligned_cols=151  Identities=28%  Similarity=0.360  Sum_probs=137.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      +.||||.|+..|+.+++++|+++|++..  .+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcC
Confidence            3589999999999999999999998863  588899999999999999999999987 5667888999999999999999


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      +.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999887 77889999999999999999999999999998 788999999999999999999999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=5e-30  Score=246.51  Aligned_cols=185  Identities=17%  Similarity=0.104  Sum_probs=164.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL  213 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  213 (568)
                      .+..+.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.|||
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL   91 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPL   91 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            4455677889999999999999999999999998 67899999999999999999999999998 677899999999999


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHH--HhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHH
Q 008358          214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE  291 (568)
Q Consensus       214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~  291 (568)
                      |+|+..|+.+++++|++.|+++....+.+|+||||+|  +..|+.+++++|++.|++ ++.+|..|.||+|.++....  
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~--  168 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFG--  168 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSST--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhccc--
Confidence            9999999999999999999998444357999999999  999999999999999999 88899999999997655543  


Q ss_pred             HHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCch
Q 008358          292 IVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSE  325 (568)
Q Consensus       292 iv~~Ll~~~g~~--~~~~d~~G~T~L~~A~~~~~~~  325 (568)
                       .++|++ .|++  ++.+|.+|+||||+|+..++.+
T Consensus       169 -~~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          169 -DELSFR-EGESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             -TBCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             -cccCcc-ccccccccccCCCcccHHHHHHHcCCcc
Confidence             356676 7888  7889999999999999987654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=6.8e-28  Score=218.97  Aligned_cols=158  Identities=30%  Similarity=0.349  Sum_probs=77.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC
Q 008358          174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  253 (568)
Q Consensus       174 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  253 (568)
                      .|.||||.|+..|+.++++.|++..+...+..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            33444444444444444444444333333444444445555555555555555555544444 44445555555555555


Q ss_pred             CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 008358          254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC  333 (568)
Q Consensus       254 ~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~  333 (568)
                      |+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|.. ++    .+++++
T Consensus        86 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~----~~i~~~  158 (165)
T 3twr_A           86 GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GD----TDIQDL  158 (165)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TC----HHHHHH
T ss_pred             CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CC----hHHHHH
Confidence            555555555555555 44455555555555555555555555555 455555555555555555443 21    245555


Q ss_pred             HHHcCc
Q 008358          334 LARCGA  339 (568)
Q Consensus       334 L~~~ga  339 (568)
                      |.+.|+
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            555544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=9.3e-28  Score=218.08  Aligned_cols=161  Identities=27%  Similarity=0.256  Sum_probs=147.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      .|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence            4778999999999999999999999976655577888899999999999999999999998 667889999999999999


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      +..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999998 77899999999999999999999999999999 88999999999999877 899999999


Q ss_pred             hcCCCC
Q 008358          297 LSLPDT  302 (568)
Q Consensus       297 l~~~g~  302 (568)
                      ++ .|+
T Consensus       160 ~~-~gA  164 (165)
T 3twr_A          160 RG-DAA  164 (165)
T ss_dssp             HT-C--
T ss_pred             hh-ccc
Confidence            98 554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.5e-27  Score=215.38  Aligned_cols=161  Identities=30%  Similarity=0.404  Sum_probs=146.6

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHH
Q 008358          170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM  249 (568)
Q Consensus       170 ~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  249 (568)
                      .....+.+||+.|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   86 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL   86 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            3455678999999999999999999998 6678889999999999999999999999999999987 7789999999999


Q ss_pred             HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHH
Q 008358          250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE  329 (568)
Q Consensus       250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~  329 (568)
                      |+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.    +
T Consensus        87 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~----~  160 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNE----D  160 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----H
T ss_pred             HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCH----H
Confidence            9999999999999999999 88899999999999999999999999999 7999999999999999999987754    6


Q ss_pred             HHHHHHHcC
Q 008358          330 IKDCLARCG  338 (568)
Q Consensus       330 i~~~L~~~g  338 (568)
                      ++++|+++|
T Consensus       161 ~~~~L~~~G  169 (169)
T 2y1l_E          161 LAEILQKLN  169 (169)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHcC
Confidence            778887765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.7e-27  Score=216.56  Aligned_cols=165  Identities=19%  Similarity=0.297  Sum_probs=152.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHh
Q 008358          173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  252 (568)
Q Consensus       173 ~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  252 (568)
                      .++.+|||.|+..|+.++++.|++..+.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            457899999999999999999999988889999999999999999999999999999999987 7789999999999999


Q ss_pred             CCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 008358          253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  332 (568)
Q Consensus       253 ~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~  332 (568)
                      .|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|...    ...++++
T Consensus        82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~----~~~~~~~  155 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAP----LRELLRE  155 (179)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHH----HHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHH----HHHHHHH
Confidence            9999999999999999 88999999999999999999999999999 8999999999999999999763    4568999


Q ss_pred             HHHHcCcccccc
Q 008358          333 CLARCGAVRANE  344 (568)
Q Consensus       333 ~L~~~ga~~~~~  344 (568)
                      .|.++|+..+..
T Consensus       156 ~L~~~g~~~~~~  167 (179)
T 3f6q_A          156 RAEKMGQNLNRI  167 (179)
T ss_dssp             HHHHTTCCCSCB
T ss_pred             HHHHhhcCcccC
Confidence            999999987644

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=8.1e-27  Score=209.69  Aligned_cols=153  Identities=27%  Similarity=0.341  Sum_probs=122.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      |.||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|+++ +.+++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Confidence            45788888888888888888887322236677788888888 888888888888877 5567777888888888888888


Q ss_pred             CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      +.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++. ++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            888888888888776 66778888888888888888888888887 66 77788888888888888888888888876

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.4e-28  Score=235.35  Aligned_cols=180  Identities=19%  Similarity=0.197  Sum_probs=131.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  217 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  217 (568)
                      +..|+||||.|+..|+.++++.|+++|+++.  .+..|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH
Confidence            3469999999999999999999999999984  347889999999999999999999988 5578999999999999999


Q ss_pred             HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCC-hHHHHH--HHcCcHHHHH
Q 008358          218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN-TALHVA--TRKKRTEIVT  294 (568)
Q Consensus       218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~-TpLh~A--~~~g~~~iv~  294 (568)
                      ..|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+|  +..|+.++++
T Consensus        79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHH
Confidence            999999999999999997 78899999999999999999999999999999 777887776 999999  7889999999


Q ss_pred             HHhcCCCCCcccc---------cCCCCCHHHHHhhCCC
Q 008358          295 ELLSLPDTNVNAL---------TRDHKTALDIAEGLPS  323 (568)
Q Consensus       295 ~Ll~~~g~~~~~~---------d~~G~T~L~~A~~~~~  323 (568)
                      +|++ .|++++..         |..+.++++++...+.
T Consensus       157 ~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          157 FLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999 78888776         5667888887776543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.4e-28  Score=237.99  Aligned_cols=209  Identities=15%  Similarity=0.117  Sum_probs=149.1

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      ..|.||||.|++.|+.+.++.||+.+                                  .+++. +..|.||||.|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g----------------------------------~~~~~-~~~~~t~L~~A~~~   47 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHG----------------------------------MRVKF-NPLPLALLLDSSLE   47 (239)
T ss_dssp             ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccC----------------------------------CCccc-CchhhHHHHHHHHc
Confidence            46889999999999999999999532                                  22332 35688999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  231 (568)
                      |+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|+||||+|+..|+.+++++|+++
T Consensus        48 g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  125 (239)
T 1ycs_B           48 GEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES  125 (239)
T ss_dssp             TCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999987 67899999999999999999999999998 677899999999999999999999999999999


Q ss_pred             CCccccccCCCCC-CHHHHH--HhCCCHHHHHHHHHcCCccccCC---------CCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358          232 DPQLARRTDKKGQ-TALHMA--VKGQSCEVVKLLLEADAAIVMLP---------DKFGNTALHVATRKKRTEIVTELLSL  299 (568)
Q Consensus       232 ~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~---------d~~G~TpLh~A~~~g~~~iv~~Ll~~  299 (568)
                      |+++ +..|..|. ||||+|  +..|+.+++++|+++|++ .+..         |..|.++++++...|.  +++.|.+ 
T Consensus       126 ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~-  200 (239)
T 1ycs_B          126 GAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR-  200 (239)
T ss_dssp             TCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-
T ss_pred             CCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-
Confidence            9998 56666665 999999  788999999999999887 4433         7789999999988876  3444433 


Q ss_pred             CCCC------cccccCCCCCHHHHHhhCC
Q 008358          300 PDTN------VNALTRDHKTALDIAEGLP  322 (568)
Q Consensus       300 ~g~~------~~~~d~~G~T~L~~A~~~~  322 (568)
                      .+.+      ....+..|.+|.++....+
T Consensus       201 ~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~  229 (239)
T 1ycs_B          201 EDEDEIEWWWARLNDKEGYVPRNLLGLYP  229 (239)
T ss_dssp             CTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             cCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence            3433      2345677888888876553

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=2.7e-26  Score=206.23  Aligned_cols=153  Identities=24%  Similarity=0.315  Sum_probs=142.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCC
Q 008358          175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  254 (568)
Q Consensus       175 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  254 (568)
                      +.||||.|+..|+.++++.|++..+.+++..|..|.||||+ +..|+.+++++|++.|+++ +..|..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            46899999999999999999999656888899999999999 9999999999999999987 788999999999999999


Q ss_pred             CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHH
Q 008358          255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL  334 (568)
Q Consensus       255 ~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L  334 (568)
                      +.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ . ++++.+|.+|+||||+|+..++.    +++++|
T Consensus        80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~----~~v~~L  152 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQ----DLVDIL  152 (156)
T ss_dssp             CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCH----HHHHHH
T ss_pred             cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcH----HHHHHH
Confidence            99999999999999 88999999999999999999999999999 5 99999999999999999998765    566666


Q ss_pred             HH
Q 008358          335 AR  336 (568)
Q Consensus       335 ~~  336 (568)
                      ++
T Consensus       153 l~  154 (156)
T 1bd8_A          153 QG  154 (156)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.2e-26  Score=204.49  Aligned_cols=150  Identities=27%  Similarity=0.391  Sum_probs=136.6

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCH
Q 008358           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH  154 (568)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~  154 (568)
                      .|+||.|++.|+.+++++|++.+.                                  +++ .|..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~----------------------------------~~~-~~~~g~t~L~~A~~~~~~   47 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGA----------------------------------PFT-TDWLGTSPLHLAAQYGHF   47 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC----------------------------------CCC-CCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCC----------------------------------CCC-cCCCCCCHHHHHHHcCCH
Confidence            489999999999999999996321                                  122 477899999999999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCc
Q 008358          155 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ  234 (568)
Q Consensus       155 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  234 (568)
                      +++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|++
T Consensus        48 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  125 (153)
T 1awc_B           48 STTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD  125 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999998 67889999999999999999999999988 677889999999999999999999999999999998


Q ss_pred             cccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358          235 LARRTDKKGQTALHMAVKGQSCEVVKLL  262 (568)
Q Consensus       235 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  262 (568)
                      + +..|..|+||||+|+..|+.+++++|
T Consensus       126 ~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          126 V-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             T-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             c-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            7 77899999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.4e-29  Score=243.42  Aligned_cols=188  Identities=20%  Similarity=0.199  Sum_probs=163.8

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      .+.+|.||||.|+..|+.++++.|++.                                  +.+++.+|..|+||||+|+
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~d~~g~tpLh~A~   62 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKE----------------------------------MNDPSQPNEEGITALHNAI   62 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHH----------------------------------SSCTTCCCTTSCCHHHHHH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhc----------------------------------CCCCCCCCCCCCCHHHHHH
Confidence            355677899999999999999999852                                  3456778999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHH--HHcCCHHHHH
Q 008358          150 VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA--ARQGHVDVVK  226 (568)
Q Consensus       150 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~  226 (568)
                      ..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..+ .+|.||||+|  +..|+.++++
T Consensus        63 ~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A           63 CGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCAT  140 (229)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence            999999999999999998 67889999999999999999999999998 55667665 6999999999  9999999999


Q ss_pred             HHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc-ccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI-VMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       227 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      +|++.|+++ +..|..|.||+|.++..+.   .++|++.|+++ ++.+|.+|+||||+|+..|+.++|+.++
T Consensus       141 ~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          141 YLADVEQSM-GLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             HHHHHHHHT-TTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHcCCCc-ccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            999999987 7778899999997665543   36778888874 5778999999999999999999987644

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.1e-28  Score=253.68  Aligned_cols=154  Identities=20%  Similarity=0.187  Sum_probs=86.0

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhcCCcc----ccccCCCCchHHHHHhhhhHHHHHHhhhcCc---ccccccCCCCCc
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQ----MVGNLSGAEFDTEVAEIRSSVVNELLKYSTK---EGLTRKNRSGFD  143 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~----~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~~g~T  143 (568)
                      +.++.||||.||+.|+.++|++|++.+.+.    ..+..+.+|++.|+..|+.++|++|++.+.+   .+++.++   +|
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~T  165 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YH  165 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CC
Confidence            445557777777777777777777543211    1112233466666666666666666654422   1222222   56


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcc-cCCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQ-TTGPSNATPLVSAA-TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  221 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~Aa-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  221 (568)
                      |||+|+..|+.++|++|+++|+++.. ..|..|.||||+|+ ..|+.+++++|++.+ .       .|.||||.|+..|+
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~  237 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGE  237 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCC
Confidence            66666666666666666666665421 14455666666666 666666666666532 1       25566666666666


Q ss_pred             HHHHHHHHcCCCcc
Q 008358          222 VDVVKALLSKDPQL  235 (568)
Q Consensus       222 ~~iv~~Ll~~~~~~  235 (568)
                      .+++++|++.+++.
T Consensus       238 ~evv~lL~~~ga~~  251 (376)
T 2aja_A          238 KYVNPFIARHVNRL  251 (376)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccc
Confidence            66666666665543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.8e-25  Score=199.90  Aligned_cols=144  Identities=19%  Similarity=0.229  Sum_probs=96.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCC-HHHH
Q 008358          171 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHM  249 (568)
Q Consensus       171 ~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh~  249 (568)
                      .+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+ .|+.+++++|+++++++ +..|..|+| |||+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            345566666666666666666666665 4455666667777777764 67777777777777766 667778888 8888


Q ss_pred             HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      |+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC------------------
T ss_pred             HHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccCC
Confidence            8888888888888888888 78888889999999999999999999988 79999999999988877543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=4.2e-27  Score=241.88  Aligned_cols=242  Identities=18%  Similarity=0.096  Sum_probs=168.7

Q ss_pred             hHhHHHHH-cCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcc-cccccCCCCCcHHHHHHHcCC
Q 008358           76 TELHLAAQ-RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE-GLTRKNRSGFDPLHIAAVQGH  153 (568)
Q Consensus        76 t~Lh~Aa~-~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~~~~g~TpLh~Aa~~g~  153 (568)
                      ++++.|.. .++.+.++++++....      ..++++.|+..|+.++++.|++.+.+. ..+..|..|.||||+|+..|+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~  140 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIK------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH  140 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCC------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCC------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence            57777776 5788888888863222      237899999999999999998765432 122345567889999999999


Q ss_pred             HHHHHHHHhcCCCCc--ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--cCcCCChHHHHHH-HcCCHHHHHHH
Q 008358          154 HAIVQVLLDHDPSLS--QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI--SRSNGKNALHFAA-RQGHVDVVKAL  228 (568)
Q Consensus       154 ~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~L  228 (568)
                      .++|++|+++|++..  ...+.+ .||||+|+..|+.+++++|+++ +.+++.  .|..|.||||+|+ ..|+.+++++|
T Consensus       141 ~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~L  218 (376)
T 2aja_A          141 LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFL  218 (376)
T ss_dssp             HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHHHH
Confidence            999999999987521  112222 7999999999999999999988 445555  7778899999999 99999999999


Q ss_pred             HcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc---------------------
Q 008358          229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---------------------  287 (568)
Q Consensus       229 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~---------------------  287 (568)
                      ++.+.        .|.||||.|+..|+.+++++|+++|++ ++..|.    +++.|+..                     
T Consensus       219 l~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~l  285 (376)
T 2aja_A          219 LDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNL  285 (376)
T ss_dssp             TTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHH
T ss_pred             HhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-cccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHH
Confidence            98653        278899999999999999999988876 222211    22222222                     


Q ss_pred             ------CcHHHHHHHhcCCCCC----cccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358          288 ------KRTEIVTELLSLPDTN----VNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  342 (568)
Q Consensus       288 ------g~~~iv~~Ll~~~g~~----~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  342 (568)
                            +..+.+++|++..++.    .....+.+.||||+|+..++.    +++++|++.|.++.
T Consensus       286 i~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~----e~v~lLl~~~~v~~  346 (376)
T 2aja_A          286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ----GACALLLSIPSVLA  346 (376)
T ss_dssp             HHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT----THHHHHTTSHHHHH
T ss_pred             HHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcH----HHHHHHHcChHHHH
Confidence                  2345666666532221    112234567889999887654    67788887776554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=8.4e-25  Score=191.95  Aligned_cols=134  Identities=21%  Similarity=0.247  Sum_probs=108.0

Q ss_pred             cccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcC-C
Q 008358          131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-G  209 (568)
Q Consensus       131 ~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g  209 (568)
                      +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+. |+.+++++|+++ +.+++..|.. |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g   78 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATL   78 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCC
Confidence            3467788888889999999888899999888888887 5677888888888888 888888888887 5567777777 7


Q ss_pred             ChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       210 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                      .||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|+++|++
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888888888888888887776 66677788888888888888888888877764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=6.8e-25  Score=197.37  Aligned_cols=145  Identities=20%  Similarity=0.193  Sum_probs=118.1

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCCh-HH
Q 008358          135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-AL  213 (568)
Q Consensus       135 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-pL  213 (568)
                      ...+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+ .|+.+++++|+++ +.+++..|..|.| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence            445778999999999999999999999999998 678899999999985 9999999999998 6778999999999 99


Q ss_pred             HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 008358          214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  284 (568)
Q Consensus       214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A  284 (568)
                      |+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccccC
Confidence            9999999999999999999998 78899999999999999999999999999999 889999999998754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=7.7e-25  Score=203.00  Aligned_cols=145  Identities=18%  Similarity=0.117  Sum_probs=90.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHHHHcCCH----HHHHHHHcCCCccccccCCCCCCHHHHH
Q 008358          176 ATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMA  250 (568)
Q Consensus       176 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  250 (568)
                      .++|+.|+..|+.+.++.++..+.   +..+ ..|+||||+|+..|+.    +++++|+++|+++ +.+|.+|+||||+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            355566666666665555555421   2222 4566666666666553    3566666666665 55566666666666


Q ss_pred             HhCCC------HHHHHHHHHcCCccccCCCCCCC-hHHHHHHHcC-----cHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 008358          251 VKGQS------CEVVKLLLEADAAIVMLPDKFGN-TALHVATRKK-----RTEIVTELLSLPDTNVNALTRDHKTALDIA  318 (568)
Q Consensus       251 ~~~~~------~~~v~~Ll~~g~~~~~~~d~~G~-TpLh~A~~~g-----~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A  318 (568)
                      +..++      .+++++|+++|++ ++.+|..|+ ||||+|+..+     +.+++++|++..|++++.+|..|+||||+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            65554      4667777777777 667777777 7777777633     345677777655777777777777777777


Q ss_pred             hhCCCch
Q 008358          319 EGLPSSE  325 (568)
Q Consensus       319 ~~~~~~~  325 (568)
                      ++.+...
T Consensus       162 ~~~~~~~  168 (186)
T 3t8k_A          162 KRCQKPI  168 (186)
T ss_dssp             HTTTCHH
T ss_pred             HHcCCHH
Confidence            7666543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.8e-25  Score=207.33  Aligned_cols=161  Identities=15%  Similarity=0.158  Sum_probs=131.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT----AVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      +.++|+.|++.|+.+.++.+++.+.+.  ..+..|+||||+|+..|+.    +++++|+++ +++++.+|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHH
Confidence            457889999999999988888877553  2236688999999988875    488888887 677888888999999999


Q ss_pred             HHcCC------HHHHHHHHcCCCccccccCCCCC-CHHHHHHhCC-----CHHHHHHHHH-cCCccccCCCCCCChHHHH
Q 008358          217 ARQGH------VDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQ-----SCEVVKLLLE-ADAAIVMLPDKFGNTALHV  283 (568)
Q Consensus       217 ~~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~g~~~~~~~d~~G~TpLh~  283 (568)
                      +..|+      .+++++|+++|+++ +.+|..|+ ||||+|+..+     ..+++++|++ +|++ ++.+|..|+||||+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHH
Confidence            88876      57899999999888 77888999 9999998844     3568999999 8998 88999999999999


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccc
Q 008358          284 ATRKKRTEIVTELLSLPDTNVNAL  307 (568)
Q Consensus       284 A~~~g~~~iv~~Ll~~~g~~~~~~  307 (568)
                      |++.|+.+++++|++ ...+.+.+
T Consensus       161 A~~~~~~~~v~~L~~-~~~~~~~~  183 (186)
T 3t8k_A          161 VKRCQKPIALKMMED-YIKKYNLK  183 (186)
T ss_dssp             HHTTTCHHHHHHHHH-HHHHHTCC
T ss_pred             HHHcCCHHHHHHHHH-HHHHHhcc
Confidence            999999999998887 33344433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.1e-24  Score=189.39  Aligned_cols=129  Identities=21%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCC-CCCHH
Q 008358          169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-GQTAL  247 (568)
Q Consensus       169 ~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-g~t~L  247 (568)
                      +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+. |+.+++++|+++++++ +..|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence            34555566666666666666666666655 34455555666666666666 6666666666665554 445555 56666


Q ss_pred             HHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 008358          248 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  302 (568)
Q Consensus       248 h~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  302 (568)
                      |+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Ga  135 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATG  135 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence            666666666666666666655 55556666666666666666666666655 444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1e-22  Score=175.28  Aligned_cols=126  Identities=43%  Similarity=0.652  Sum_probs=88.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  219 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  219 (568)
                      +|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence            4677888888888888888877777776 45666777777777777777777777766 445566666677777777777


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                      |+.+++++|+++++++ +..|..|+||||+|+..++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777766665 55566667777777777777777777666653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=7.4e-23  Score=179.47  Aligned_cols=125  Identities=25%  Similarity=0.381  Sum_probs=79.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358          139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  218 (568)
Q Consensus       139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  218 (568)
                      ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Confidence            34566777777777777777777776665 45566666666666666666666666665 44555556666666666666


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC
Q 008358          219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  266 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  266 (568)
                      .|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666666666666554 455556666666666666666666665543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.4e-22  Score=174.36  Aligned_cols=126  Identities=44%  Similarity=0.619  Sum_probs=99.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC
Q 008358          174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  253 (568)
Q Consensus       174 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  253 (568)
                      +|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            467888888888888888888877 4556777778888888888888888888888887776 66677888888888888


Q ss_pred             CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 008358          254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  303 (568)
Q Consensus       254 ~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  303 (568)
                      ++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|+|
T Consensus        79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred             ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence            888888888888877 67778888888888888888888888877 5654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=7.8e-23  Score=179.34  Aligned_cols=124  Identities=27%  Similarity=0.415  Sum_probs=89.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHH
Q 008358          172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV  251 (568)
Q Consensus       172 ~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  251 (568)
                      ...+.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            34566777777777777777777776 4556666777777777777777777777777777665 556677777777777


Q ss_pred             hCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       252 ~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      ..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus        89 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            77777777777777777 66677777777777777777777777766

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=6.6e-22  Score=197.68  Aligned_cols=141  Identities=24%  Similarity=0.249  Sum_probs=103.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccCcCCCh
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKN  211 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t  211 (568)
                      .+.++|+.|+..|+.+.++.|++.|++++..     .+..|.||||+|+..   |+.+++++|+++ +.+++..|.+|.|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCC
Confidence            3456799999999999999999888887432     577788888888876   778888888877 5567777777888


Q ss_pred             HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc
Q 008358          212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  289 (568)
Q Consensus       212 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~  289 (568)
                      |||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+..|+.+++++|+++|++       .|.||||+|+..|+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            888888888888888888877776 66777788888888887888888888777765       46778887777665

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.7e-22  Score=177.29  Aligned_cols=114  Identities=28%  Similarity=0.346  Sum_probs=89.9

Q ss_pred             ccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 008358          204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  283 (568)
Q Consensus       204 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~  283 (568)
                      .+|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence            45677778888888777888888888777776 56677788888888888888888888888777 67778888888888


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 008358          284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  320 (568)
Q Consensus       284 A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~  320 (568)
                      |+..|+.+++++|++ .|++++.+|..|+||+|+|..
T Consensus        83 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCC
T ss_pred             HHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhh
Confidence            888888888888887 688888888888888888764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.3e-22  Score=177.98  Aligned_cols=121  Identities=29%  Similarity=0.377  Sum_probs=59.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      +|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHH
Confidence            4555556666666666666666666555554 34445555555555555555555555544 333444444444444444


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHH
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK  260 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  260 (568)
                      +..|+.+++++|++.++++ +..|..|+||||+|+..+..++++
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHh
Confidence            4444444444444444443 333444444444444433333333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.2e-22  Score=195.09  Aligned_cols=139  Identities=23%  Similarity=0.254  Sum_probs=123.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA  216 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A  216 (568)
                      +..|+||||+|+..|+.++++.|++ |+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+ ..|.||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHH
Confidence            4568899999999999999999999 8887 67889999999999999999999999998 56677777 7899999999


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      +..|+.+++++|+++|+++ +..|..|+||||+|+..+                  .+..+.||||+|+..|+.+++++|
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHH
Confidence            9999999999999999987 778999999999998521                  225688999999999999999999


Q ss_pred             hc
Q 008358          297 LS  298 (568)
Q Consensus       297 l~  298 (568)
                      ++
T Consensus       180 ~~  181 (244)
T 3ui2_A          180 EG  181 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=2.6e-22  Score=185.51  Aligned_cols=139  Identities=23%  Similarity=0.255  Sum_probs=124.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHH
Q 008358          138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA  216 (568)
Q Consensus       138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A  216 (568)
                      +..|+||||+|+..|+.++++.|++ |.++ +..|..|.||||+|+..|+.+++++|+++ +.+++..| .+|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHH
Confidence            5678999999999999999999999 8887 67889999999999999999999999998 56677777 8899999999


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      +..|+.+++++|+++|+++ +..|.+|+||||+|++.++                  ...+.|+|++|+..|+.+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999999987 7889999999999986321                  13568999999999999999998


Q ss_pred             hc
Q 008358          297 LS  298 (568)
Q Consensus       297 l~  298 (568)
                      .+
T Consensus       179 ~~  180 (183)
T 3deo_A          179 EG  180 (183)
T ss_dssp             HT
T ss_pred             HH
Confidence            76

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=5.9e-22  Score=183.12  Aligned_cols=141  Identities=21%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      +..|.||||.|++.|+.++++.|++                                   +.+++.+|..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------------------~~~~~~~d~~g~t~L~~A~~   85 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-----------------------------------DRDVDAVDENGRTALLFVAG   85 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-----------------------------------TSCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-----------------------------------cCCCCCcCCCCCCHHHHHHH
Confidence            3456799999999999999999985                                   23467778999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358          151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS  230 (568)
Q Consensus       151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  230 (568)
                      .|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..++         
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~---------  155 (183)
T 3deo_A           86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK---------  155 (183)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH---------
T ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc---------
Confidence            99999999999999998544448999999999999999999999998 67788999999999999997432         


Q ss_pred             CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHc
Q 008358          231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  265 (568)
Q Consensus       231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  265 (568)
                               ...+.++|++|+..|..+++++|.++
T Consensus       156 ---------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          156 ---------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ---------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence                     24578999999999999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=7.3e-22  Score=191.39  Aligned_cols=143  Identities=20%  Similarity=0.203  Sum_probs=126.1

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      ..|.||||.||+.|+.++++.|++                                   +.+++.+|..|+||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------------------~~~~~~~d~~g~t~L~~A~~~   87 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-----------------------------------DRDVDAVDENGRTALLFVAGL   87 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-----------------------------------TCCTTCBCTTSCBHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-----------------------------------CCCCCCcCCCCCCHHHHHHHC
Confidence            356799999999999999999985                                   334677889999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  231 (568)
                      |+.++|++|+++|++++...+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..++          
T Consensus        88 g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~----------  156 (244)
T 3ui2_A           88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK----------  156 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHT----------
T ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHh----------
Confidence            9999999999999999544448899999999999999999999998 67788999999999999986322          


Q ss_pred             CCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       232 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                              +..+.||||+|+..|+.+++++|++++.+
T Consensus       157 --------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          157 --------TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             --------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             --------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                    35689999999999999999999997554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=2.8e-22  Score=191.27  Aligned_cols=130  Identities=27%  Similarity=0.325  Sum_probs=78.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      .+..|+||||+|+..|+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|++..+.+++..|..|.||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            4566778888888888888888888877776 456666777777777777777777776664555555555555555555


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                      +..|+.+++++|+++|+++ +..|.+|+||||+|+..++.++++.|++.++.
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            5555555555555555554 44455555555555555555555555555444

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=2.4e-21  Score=166.57  Aligned_cols=111  Identities=27%  Similarity=0.330  Sum_probs=95.5

Q ss_pred             CcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358          206 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  285 (568)
Q Consensus       206 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~  285 (568)
                      +..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            456788899999999999999888888876 67788899999999999999999999998888 7888889999999999


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          286 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       286 ~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      ..|+.+++++|++ .|++++.+|.+|+||||+|.
T Consensus        82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence            9999999999998 78999999999999999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=5.8e-22  Score=189.01  Aligned_cols=137  Identities=26%  Similarity=0.316  Sum_probs=106.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCCCHHHH
Q 008358          171 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHM  249 (568)
Q Consensus       171 ~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~  249 (568)
                      .+..|.||||+|+..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~  146 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA  146 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence            356678999999999999999999987 566788888999999999999999999999988 7766 7788899999999


Q ss_pred             HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCC
Q 008358          250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH  311 (568)
Q Consensus       250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G  311 (568)
                      |+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.++++.|++ .+++.+..|.+|
T Consensus       147 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~  206 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED  206 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence            9999999999999999888 78889999999999999999999988888 788777666554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=1.9e-21  Score=167.20  Aligned_cols=110  Identities=26%  Similarity=0.336  Sum_probs=66.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHh
Q 008358          173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  252 (568)
Q Consensus       173 ~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  252 (568)
                      ..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            3445555555555555555555555 3344555555666666666666666666666666554 5556666666666666


Q ss_pred             CCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358          253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  285 (568)
Q Consensus       253 ~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~  285 (568)
                      .|+.+++++|+++|++ ++.+|.+|+||||+|.
T Consensus        83 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhC
Confidence            6666666666666666 5666666666666663

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=2.7e-21  Score=193.26  Aligned_cols=139  Identities=22%  Similarity=0.250  Sum_probs=118.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCccc------cCcCCChHHHHHHHc---CCHHHHHHHHcCCCccccccCCCCCC
Q 008358          175 NATPLVSAATRGHTAVVNELLSKDGGLLEI------SRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQT  245 (568)
Q Consensus       175 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t  245 (568)
                      +.++|+.|+..|+.+.++.|++. +.+++.      .+..|.||||+|+..   |+.+++++|+++|+++ +..|.+|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            45789999999999999999987 445555      588999999999987   8999999999999987 778999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 008358          246 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  323 (568)
Q Consensus       246 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~  323 (568)
                      |||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++ .|++      .|.||||+|+..+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCC
Confidence            99999999999999999999999 88999999999999999999999999998 5654      68999999987654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.6e-20  Score=185.41  Aligned_cols=195  Identities=18%  Similarity=0.190  Sum_probs=146.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358          137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  216 (568)
Q Consensus       137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  216 (568)
                      .|..+.+.|+.+...|+..+.+++...-+.........+....    .....-..+++...........+....++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            4667888999999999988777765543332111111111111    111111222333222222222233456899999


Q ss_pred             HHcCCHHHHHHHHcCCCccc-----cccCCCCCCHHHHHHhC---CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 008358          217 ARQGHVDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK  288 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g  288 (568)
                      +..|+.+.++.+++.++++.     +..|..|+||||+|+..   |+.+++++|+++|++ ++.+|..|+||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcC
Confidence            99999999999999998853     34488999999999998   899999999999999 8899999999999999999


Q ss_pred             cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          289 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       289 ~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      +.+++++|++ .|++++.+|.+|+||||+|+..++.    +++++|+++|+.+
T Consensus       217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLKHE----HCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHTTC
T ss_pred             CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCH----HHHHHHHHcCCCC
Confidence            9999999999 8999999999999999999987754    7888899988864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=7.1e-20  Score=180.81  Aligned_cols=191  Identities=17%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHhcCCcccccc-CCCCchHHHHHhhhhHHHH--HHhhhcCcccccccCCCCCcHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN-LSGAEFDTEVAEIRSSVVN--ELLKYSTKEGLTRKNRSGFDPLH  146 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~--~Ll~~~~~~~~~~~~~~g~TpLh  146 (568)
                      .|..+.+.|+.+...|+....+.+....+...... ......     ..+.+.+.  ++.. ..............++|+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~-----~~~~~fI~aKYl~~-~f~~~~~~~~~~~l~~l~  135 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM-----IARKDYITAKYMER-RYARKKHADTAAKLHSLC  135 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH-----HHHHHHHHHHHTTC-TTSCCCSSSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH-----HHHHHHHHHHHHHh-hcccccccccchhhhhhh
Confidence            56788899999999999888777654332221100 011111     11112221  2211 111112222223346888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcc-----cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPSLSQ-----TTGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  218 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~~~~-----~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  218 (568)
                      .|+..|+.+.++.+++.|+++..     ..|..|.||||+|+..   |+.+++++|+++ +.+++..|.+|.||||+|+.
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHH
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHH
Confidence            88888998888888888887532     2356677777777777   677777777776 45566667777777777777


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                      .|+.+++++|+++|+++ +..|.+|+||||+|+..|+.+++++|+++|++
T Consensus       215 ~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          215 TDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777777777777765 56677777777777777777777777776654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.1e-19  Score=186.05  Aligned_cols=145  Identities=19%  Similarity=0.209  Sum_probs=84.3

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccccC--cCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHH
Q 008358          174 SNATPLVSAATR-GHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA  250 (568)
Q Consensus       174 ~g~tpL~~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  250 (568)
                      .+.|+||.|+.. |+.++++.|+++ +.+++..+  ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            445677777766 677777777665 44555555  56777777777777777777777776666 56667777777777


Q ss_pred             HhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC--CCCCcccccCCCCCHHHHHhhC
Q 008358          251 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL--PDTNVNALTRDHKTALDIAEGL  321 (568)
Q Consensus       251 ~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~--~g~~~~~~d~~G~T~L~~A~~~  321 (568)
                      +..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+..  .+.+....+..+.|+++++...
T Consensus       276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            777777777777777776 666777777777777777777777777641  2233444556667777766554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.7e-19  Score=184.62  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=94.4

Q ss_pred             cCcCCChHHHHHHHc-CCHHHHHHHHcCCCccccccC--CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHH
Q 008358          205 SRSNGKNALHFAARQ-GHVDVVKALLSKDPQLARRTD--KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  281 (568)
Q Consensus       205 ~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpL  281 (568)
                      .+..+.|+||.|+.. |+.++++.|++.|+++ +..|  ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            344566778888877 7888888888777776 4455  6777888888888888888888887777 677777788888


Q ss_pred             HHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358          282 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       282 h~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~  340 (568)
                      |+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..++.    +++++|+.++..
T Consensus       273 h~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~----~iv~lLl~~~~~  326 (368)
T 3jue_A          273 HHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANA----DIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHC-
T ss_pred             HHHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCH----HHHHHHHHcCCC
Confidence            88888888888888777 6788888888888888888776653    555666655543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=2.4e-19  Score=145.89  Aligned_cols=92  Identities=48%  Similarity=0.692  Sum_probs=63.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358          208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  287 (568)
Q Consensus       208 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~  287 (568)
                      +|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence            3667777777777777777777776665 56667777777777777777777777777776 666777777777777777


Q ss_pred             CcHHHHHHHhcCCCC
Q 008358          288 KRTEIVTELLSLPDT  302 (568)
Q Consensus       288 g~~~iv~~Ll~~~g~  302 (568)
                      |+.+++++|++ .|+
T Consensus        79 ~~~~~~~~Ll~-~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLE-AGA   92 (93)
T ss_dssp             TCHHHHHHHHH-TTC
T ss_pred             CCHHHHHHHHH-cCC
Confidence            77777777776 454

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=8.5e-20  Score=154.78  Aligned_cols=109  Identities=38%  Similarity=0.481  Sum_probs=98.0

Q ss_pred             ccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 008358          204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  283 (568)
Q Consensus       204 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~  283 (568)
                      .+|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            46788999999999999999999999999887 77889999999999999999999999999998 88899999999999


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 008358          284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL  315 (568)
Q Consensus       284 A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L  315 (568)
                      |+..++.+++++|++ .|+++|.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            999999999999998 8999999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=9.7e-19  Score=142.25  Aligned_cols=92  Identities=40%  Similarity=0.641  Sum_probs=65.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  219 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  219 (568)
                      +|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHc
Confidence            3677777777777777777777777776 56667777777777777777777777766 455666677777777777777


Q ss_pred             CCHHHHHHHHcCCC
Q 008358          220 GHVDVVKALLSKDP  233 (568)
Q Consensus       220 g~~~iv~~Ll~~~~  233 (568)
                      |+.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            77777777776664

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=1.7e-18  Score=146.66  Aligned_cols=108  Identities=30%  Similarity=0.446  Sum_probs=72.3

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHH
Q 008358          136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  215 (568)
Q Consensus       136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  215 (568)
                      .+|.+|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHH
Confidence            35667777777777777777777777777776 45666777777777777777777777766 44556666666666666


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCCH
Q 008358          216 AARQGHVDVVKALLSKDPQLARRTDKKGQTA  246 (568)
Q Consensus       216 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  246 (568)
                      |+..|+.+++++|+++|+++ +..+..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            66666666666666666665 4555555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=1.5e-16  Score=133.67  Aligned_cols=93  Identities=37%  Similarity=0.463  Sum_probs=72.3

Q ss_pred             ccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHH
Q 008358          202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  281 (568)
Q Consensus       202 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpL  281 (568)
                      ....|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence            3445677888888888888888888888887776 66678888888888888888888888888887 777888888888


Q ss_pred             HHHHHcCcHHHHHHH
Q 008358          282 HVATRKKRTEIVTEL  296 (568)
Q Consensus       282 h~A~~~g~~~iv~~L  296 (568)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            888888888888765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.64  E-value=6.5e-16  Score=129.69  Aligned_cols=93  Identities=26%  Similarity=0.322  Sum_probs=76.5

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL  213 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  213 (568)
                      ....|.+|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcHH
Confidence            4556778889999999999999999999998887 56788889999999999999999998888 566788888888999


Q ss_pred             HHHHHcCCHHHHHHH
Q 008358          214 HFAARQGHVDVVKAL  228 (568)
Q Consensus       214 h~A~~~g~~~iv~~L  228 (568)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999888888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	568
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-25
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-04

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  105 bits (263), Expect = 2e-25
 Identities = 44/243 (18%), Positives = 71/243 (29%), Gaps = 30/243 (12%)

Query: 74  NDTELHLAAQRGDLGAVKQILY---GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKY-S 129
           N     LAA+ G L  + ++          M+   +   F          V+N L +   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA 189
           T+     +  + +     A  +GHH ++  LLD             A   +     G   
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--------PVMLAYAEIHEFEYGEKY 237

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           V   +      L E       +A   +   G  D+V        +            L  
Sbjct: 238 VNPFIARHVNRLKE-----MHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIR 285

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPD----KFGNTALHVATRKKRTEIVTELLSLPDTNVN 305
                  + ++ LL       + P        N  L +A R         LLS+P   V 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS--VL 343

Query: 306 ALT 308
           ALT
Sbjct: 344 ALT 346

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 92.6 bits (229), Expect = 4e-21
 Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 22/231 (9%)

Query: 104 NLSGAEFDTEVAEIRSSVVNELLKYSTKEG---LTRKNRSGFDPLHIAAVQGHHAIVQVL 160
           N+   E D ++  I   +   L ++        L   +      + +   +    + Q+L
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 161 LDHDPSLSQTT----------GPSNATPLVSAATRGHTAVVN--ELLSKDGGLLEISRSN 208
             +    ++            G  +      AA  G ++ ++   LL     ++++ ++ 
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 209 GKNALHFAARQGHVDVVKALLSKDP-QLARRTDKKGQTALHMAVKGQSCEVVKLLLE--A 265
              A   AA  GH+ V+  L    P ++      +   A  +A +     V+  L E   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 266 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLS----LPDTNVNALTRDHK 312
             A  M+  +        A  +    ++  LL     L    ++      K
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 236

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 7e-25
 Identities = 69/276 (25%), Positives = 97/276 (35%), Gaps = 72/276 (26%)

Query: 76  TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           T LH+A+  G L  VK +L  G                          N           
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-----------------------PNV---------- 28

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
              N     PLH+AA  GH  + + LL +   ++      + TPL  AA  GHT +V  L
Sbjct: 29  --SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLL 85

Query: 195 LSKD--------------------------------GGLLEISRSNGKNALHFAARQGHV 222
           L  +                                          G   LH AA+ G V
Sbjct: 86  LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 145

Query: 223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 282
            V + LL +D        K G T LH+AV   + ++VKLLL    +    P   G T LH
Sbjct: 146 RVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLH 203

Query: 283 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           +A ++ + E+   LL     + NA +    T L +A
Sbjct: 204 IAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-23
 Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 7/243 (2%)

Query: 69  VTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLK 127
             G++  T LH+A    +L  VK +L  G                   + +  V   LL+
Sbjct: 160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

Query: 128 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 187
           Y        ++  G  PLH+AA +GH  +V +LL    + +     S  TPL   A  GH
Sbjct: 220 YGGSA--NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGH 276

Query: 188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL 247
             V + L+   G +++ +   G   LH A+  G++ +VK  L +         K G + L
Sbjct: 277 VPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPL 334

Query: 248 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 307
           H A +    ++V LLL+  A+        G T L +A R     +   L  + D     L
Sbjct: 335 HQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

Query: 308 TRD 310
             D
Sbjct: 394 VSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 9e-22
 Identities = 60/233 (25%), Positives = 88/233 (37%), Gaps = 38/233 (16%)

Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
           +  V   LL+           ++G  PLH+A    +  IV++LL    S       +  T
Sbjct: 144 KVRVAELLLERDAH--PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-NGYT 200

Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
           PL  AA +    V   LL   G     S   G   LH AA++GH ++V  LLSK      
Sbjct: 201 PLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSKQANGNL 259

Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAI---------------------------- 269
             +K G T LH+  +     V  +L++    +                            
Sbjct: 260 G-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 318

Query: 270 ----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
               V    K G + LH A ++  T+IVT LL     + N ++ D  T L IA
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIA 370

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-24
 Identities = 69/312 (22%), Positives = 102/312 (32%), Gaps = 85/312 (27%)

Query: 74  NDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
           ++  L  A Q  D+  V+Q+L  G +                       VN         
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN-----------------------VN--------- 32

Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL------------------------- 167
              ++   G+ PLH A       IV++LL H                             
Sbjct: 33  --FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 168 -------SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKN 211
                           T  + AA  G    +  L  +   +          E  R  G  
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150

Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC----EVVKLLLEADA 267
           AL  AA +GHV+V+K LL +        D  G+ AL  A+          +  LLL+  A
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEA 327
             V +  + G T L +A  KK   +V  LL      +N    D KTAL +A       + 
Sbjct: 211 D-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA----VELKL 265

Query: 328 SEIKDCLARCGA 339
            +I + L + GA
Sbjct: 266 KKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-24
 Identities = 58/254 (22%), Positives = 93/254 (36%), Gaps = 16/254 (6%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEL 125
           V         T LH A Q      V+ +L      ++           +A I  SV    
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFLLAAIAGSVKLLK 89

Query: 126 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN---------A 176
           L  S    +   +  GF     AAV G    ++ L     +++                A
Sbjct: 90  LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA----ARQGHVDVVKALLSKD 232
           T L+ AA +GH  V+  LL + G  +    + G+NAL  A           +   LL   
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
             +  R  ++G+T L +AV+ +   +V+ LLE +   +   D  G TAL +A   K  +I
Sbjct: 210 ADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 293 VTELLSLPDTNVNA 306
              L      + + 
Sbjct: 269 AELLCKR-GASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 6e-10
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
           +     + L  A +   VD+V+ LL     +  + ++ G T LH AV+    ++V+LLL
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
           +    L  AV+ +  ++V+ LLE  A +    ++ G T LH A +  R +IV
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 1e-19
 Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 38/247 (15%)

Query: 74  NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEG 133
           ++  +   A  G L  +K+ +                         S+            
Sbjct: 3   SNLMVCNLAYSGKLEELKESI---------------------LADKSLAT---------- 31

Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
             R ++     LH A   GH  IV+        +            +  A       + +
Sbjct: 32  --RTDQDSRTALHWACSAGHTEIVEF--LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVK 87

Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
            L   G  +     NG   LH+AA +   ++   LL        + D    TA+H     
Sbjct: 88  ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHR-AAA 145

Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
           +    +  +L    A   + D  GNT LH+A  ++R E    L+S    ++    ++ KT
Sbjct: 146 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKT 204

Query: 314 ALDIAEG 320
            L +A+G
Sbjct: 205 PLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 1e-18
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 5/195 (2%)

Query: 70  TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYS 129
           T + + T LH A   G    V+ +L         + +G       A      + + L   
Sbjct: 33  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG- 91

Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA 189
               +   N++G  PLH AA +  H I  +LL+   +         AT +  AA +G+  
Sbjct: 92  KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YEATAMHRAAAKGNLK 150

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           +++ LL             G   LH A  +  V+  K L+S+   +    +K+ +T L +
Sbjct: 151 MIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIE-NKEEKTPLQV 208

Query: 250 AVKGQSCEVVKLLLE 264
           A  G    ++K ++E
Sbjct: 209 AKGGLG-LILKRMVE 222

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 82.5 bits (202), Expect = 4e-18
 Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 25/256 (9%)

Query: 63  KKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVV 122
           ++ V  +  RHN T LH  A        + ++     + +    GA+ +    +  + ++
Sbjct: 22  RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMDCDENTPLM 79

Query: 123 NELLKYSTKEGLTRKNRSGFDPLHIAAVQ---------GHHAIVQVLLDHDPSLSQTTGP 173
             +L    +             ++  + +             ++  +L+           
Sbjct: 80  LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 139

Query: 174 SNATPLVS--AATRGHTAV----------VNELLSKDGGLLEISRSNGKNALHFAARQGH 221
                      A                   ++        +  +  G+ ALH+AA+  +
Sbjct: 140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 199

Query: 222 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
           + +VK L+ +      + D+ G+T + +A +    EVV  L++  A++    D   +TA 
Sbjct: 200 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTAR 258

Query: 282 HVATRKKRTEIVTELL 297
            +A       IV ++ 
Sbjct: 259 QLAQANNHHNIV-DIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.5 bits (171), Expect = 5e-14
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
           T L  AA   +  +V  L+ + G   +    +GK  +  AA++G ++VV  L+ +   + 
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
              D    TA  +A       +V +    
Sbjct: 249 AV-DATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.4 bits (155), Expect = 5e-12
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           +   G   LH AA   +  IV+ L+    S          TP++ AA  G   VV  L+ 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALL 229
           + G  +E   +    A   A    H ++V    
Sbjct: 243 Q-GASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA----- 267
           LH  A  G   + + +  +   +     +  +T LH      S E  + L+  +A     
Sbjct: 6   LHTEA-AGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 268 --AIVMLPDKFGNTALHVATRKKRTE 291
             A V   D   NT L +A   +R  
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 177 TPL-VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
           +P+ +     G  A+   +  +   +  I   + +  LH+ A     +  + L+  + + 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 236 A-------RRTDKKGQTALHMAVKGQSCE 257
                      D    T L +AV  +   
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
           ++  G  P+ +AA +G   +V  L+    S+      ++ T    A    H  +V ++  
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNIV-DIFD 274

Query: 197 K 197
           +
Sbjct: 275 R 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 45/268 (16%), Positives = 75/268 (27%), Gaps = 60/268 (22%)

Query: 124 ELLKYSTKEGL-TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG-------PSN 175
            + +  T+E +     R     LH  A        + L+ H+       G          
Sbjct: 15  AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 74

Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
            TPL+ A       +V   L K G    I   + ++ALH AA      ++  +L+     
Sbjct: 75  NTPLMLAVLARRRRLVAY-LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 133

Query: 236 ARRTDKKGQTALHM---AVKGQSCEVVKLLLEADAAIVM---------LPDKFGNTAL-- 281
               +        +   A      +V    L  +    +              G TAL  
Sbjct: 134 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 193

Query: 282 --------------------------------HVATRKKRTEIVTELLSLPDTNVNALTR 309
                                            +A ++ R E+V  L+     +V A+  
Sbjct: 194 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDA 252

Query: 310 DHKTALDIAEGLPSSEEASEIKDCLARC 337
              TA  +A     +     I D   RC
Sbjct: 253 TDHTARQLA----QANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 244 QTALHMAVK-GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
           ++ + +  +   S  + + +      I+    +   T LH        E   +L+     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 303 -------NVNALTRDHKTAL 315
                  +VNA+  D  T L
Sbjct: 59  ECIAAGADVNAMDCDENTPL 78

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (200), Expect = 5e-18
 Identities = 53/239 (22%), Positives = 82/239 (34%), Gaps = 17/239 (7%)

Query: 75  DTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDT--EVAEIRSSVVNELLKYSTK 131
           DT LHLA        +  +L +    + + +L      T   +A I          Y+  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT------------TGPSNATPL 179
            G+    R G   LH+A     H    VLL   PS  +             T  ++  P 
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 180 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT 239
              +                  LE    +G   LH A      ++V+ L      L +  
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
              G+T LH+AV+ Q+  V++LLL+A A         G T L  A  +    +   L +
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 45/263 (17%), Positives = 67/263 (25%), Gaps = 62/263 (23%)

Query: 125 LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSA 182
           +  Y T++G T         LH+A +  H   +  LL                 T L  A
Sbjct: 1   VFGYVTEDGDT--------ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

Query: 183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT--- 239
           A  G  + V +L +   G + ++   G  ALH A R         LL   P   R     
Sbjct: 53  AILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 240 ----------DKKGQTALHMAVKGQSCEVVKLLLEADAAI-------------------- 269
                     D     A   +      E      +    +                    
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 270 -------------VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD 316
                               G T LH+A   +   ++  LL     +  A     +T L 
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLG 230

Query: 317 IAEGLPSSEEASEIKDCLARCGA 339
            A           +   L   GA
Sbjct: 231 SA----LLRPNPILARLLRAHGA 249

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.6 bits (200), Expect = 1e-17
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 17/197 (8%)

Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATRGHTAVVNEL 194
            G  PLH      +  +V+ L+ H  +         +    A   V+    G    + + 
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 195 LSKDG---------GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
           L              L  I  ++G      AA+     ++  ++ K  +  +    + ++
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 246 ALHMAVKGQSCEVVKLLLEAD--AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 303
             +     +   +++ L      A ++   D  G+T L++A R     IV  LL     +
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GAD 284

Query: 304 VNALTRDHKTALDIAEG 320
                +     +D   G
Sbjct: 285 PFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 2e-15
 Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 24/250 (9%)

Query: 23  SQKSIGESSLTPSPSPSPSSATAPALVLSNSGKRIDQAGKKKY--VKQVTGRHNDTELHL 80
              S+   S   +     S+     +   +  + ++ A       +      H +T LH 
Sbjct: 54  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 113

Query: 81  AAQRGDLGAVKQIL-YGIDSQMVGN--LSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRK 137
                +L  VK ++ +G +     N   S      +      S   E L       L  +
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 138 NRSGFDPLHIAAVQGHH------------AIVQVLLDHDPSLSQTTGPSNATPLVSAATR 185
           +      LH   +                 ++  ++       Q+      +        
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 186 GHTAVVNELLSKD--GGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDK 241
              +++  L  K     +L    SNG   L+ AAR G++ +V ALL    DP +    +K
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI---ANK 290

Query: 242 KGQTALHMAV 251
            G   +    
Sbjct: 291 SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
             L          +   L +          S+ +   H +      +V  A  +    L 
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR---TEIV 293
              D+ G T LH      + E+VK L++  +   +  D  G + L  A +      +   
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 294 TELLSLPDTNVNALTRDHKTALDIA 318
             LL      +      ++T L   
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 206 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265
           +   +  L         ++  +L +             Q   H++      EV       
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 266 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 325
              + +  D+ GNT LH  T     E+V  L+    +N        ++ L  A    ++ 
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 326 EASEIKDCLARCGAVRANELNQPRDEL 352
           ++   +  L         E +  R  L
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTIL 181

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 5e-17
 Identities = 41/232 (17%), Positives = 66/232 (28%), Gaps = 43/232 (18%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK   +  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 204 ISRSNGKNALHFAARQGHVDVVKA------------------------------------ 227
               +      F       ++                                       
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 287
            L ++    R  DK  Q  LH A    S ++++LL     + V   DK G T L  A  +
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 288 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 339
              +    L+       + +      A D+A          ++K        
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA-------LNEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 37/201 (18%), Positives = 60/201 (29%), Gaps = 8/201 (3%)

Query: 72  RHNDTELHLAAQRGDLGAVKQIL---YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKY 128
           +     LH +           +L     ++     + SG         + +  V + L  
Sbjct: 32  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 91

Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
              +    K  +        AV      V   L  + +  +     N  PL  AA+ G  
Sbjct: 92  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 151

Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 248
            ++  L       +      G   L  A  +GH D    L+ K        D KG  A  
Sbjct: 152 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 211

Query: 249 MAVKGQSCEVVKLLLE--ADA 267
           +A+     +V K  L    DA
Sbjct: 212 VALNE---QVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 245 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 290
             LH A        V+ LL +  ++++  D+ G   LH +   +  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 278 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           N  LH A  +     V ELL    + +    +D +  L  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 3e-14
 Identities = 48/231 (20%), Positives = 83/231 (35%), Gaps = 20/231 (8%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTE---------VAEIRSSVVNEL 125
           DT LH+A  +G+L AV +++            G E D           +A I +      
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQ------GGRELDIYNNLRQTPLHLAVITTLPSVVR 57

Query: 126 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSA 182
           L  +        +R G    H+A        ++ LLD         +       T L  A
Sbjct: 58  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 117

Query: 183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 242
                   V  LL +   +  +   +G++ L  A     + +V+ LL +           
Sbjct: 118 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYS 176

Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
           G +ALH A       +V+ L+ + A    L +   +T L VA  ++  +I+
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 5e-12
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
           G   LH+A        VQ+LL+    +      S  +PL+ A    ++  + +LL + G 
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGA 168

Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEV 258
            +     +G +ALH A+ +G + +V+ L+    D  L    +    T L +A   +  ++
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMVARSRRVIDI 225

Query: 259 VK 260
           ++
Sbjct: 226 LR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 123 NELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA 182
            +LL     +      +SG  PL  A      ++VQ+LL H  +       S ++ L SA
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSA 184

Query: 183 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 226
           + RG   +V  L+   G    +   +    L  A  +  +D+++
Sbjct: 185 SGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 6e-09
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLAR---RTDKKGQTALHMAVKGQSC 256
           +G   LH A  QG++  V  L++   Q  R     +   QT LH+AV     
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 48/217 (22%), Positives = 75/217 (34%), Gaps = 41/217 (18%)

Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQ---TTGPSNATPL------------------ 179
           G  PLHIA VQG+   V  L++      +          TPL                  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 180 ---------------VSAATRGHTAVVNELLSK---DGGLLEISRSNGKNALHFAARQGH 221
                            A        +  LL         LE    +G  ALH A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 222 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
            + V+ LL +   +     K G++ L  AV+  S  +V+LLL+  A +       G++AL
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSGSSAL 181

Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
           H A+ +    +V  L+     + +     + T L +A
Sbjct: 182 HSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA 217

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 55/296 (18%), Positives = 93/296 (31%), Gaps = 67/296 (22%)

Query: 51  SNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAE 109
             S   ++    K+   +V    +      A   GD   V ++L  G D           
Sbjct: 18  IGSETDLEPPVVKRKKTKVK-FDDGAVFLAACSSGDTEEVLRLLERGAD----------- 65

Query: 110 FDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 169
                       +N              N  G   LH A +  +  +V+ L+++  +   
Sbjct: 66  ------------INY------------ANVDGLTALHQACIDDNVDMVKFLVENGAN--I 99

Query: 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL- 228
               +     + AA       + E L   G  +    S G   L  A  +   ++++   
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 229 -------------------------LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
                                    L+       R  K G TALH+A      EV+KLL 
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL- 218

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319
                 V + D  G T LH A    + E    L+     ++ A+ +  +TA D+A+
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 146 HIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS 205
                +      +  L+           S  T L  AA +G+T V+  L+     +  I 
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIK 228

Query: 206 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
             +G   LH AA  G  +  + L+     +    +K GQTA  +A +    +++  L E
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAV-NKVGQTAFDVADE----DILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 48/263 (18%), Positives = 84/263 (31%), Gaps = 70/263 (26%)

Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL------ 228
           +    ++A + G T  V  LL + G  +  +  +G  ALH A    +VD+VK L      
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 229 --------------------------LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
                                     L          + +G T L +A +    E+++  
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 263 LEADAAIVMLP--------------------------DKFGNTALHVATRKKRTEIVTEL 296
           +      +                              K G TALHVA  K  TE++   
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL- 217

Query: 297 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV 356
           L     +VN    D  T L  A    +     E    L         ++    +++ +T 
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAA----AHWGKEEACRILVENLC----DMEA-VNKVGQTA 268

Query: 357 TQI-KKDVHTQLEQTRRTNKNVH 378
             +  +D+   LE+ ++    +H
Sbjct: 269 FDVADEDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 216 AARQGHVDVVKALLSKDPQLARRTDKK--------GQTALHMAVKGQSCEVVKLLLEADA 267
            A+Q   + +K  +  +  L     K+               A      E V  LLE  A
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 268 AIVMLPDKFGNTALHVATRKKRTEI 292
             +   +  G TALH A      ++
Sbjct: 65  D-INYANVDGLTALHQACIDDNVDM 88

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.7 bits (153), Expect = 4e-12
 Identities = 43/214 (20%), Positives = 70/214 (32%), Gaps = 42/214 (19%)

Query: 119 SSVVNELLKYSTKEGL---TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 175
           + V+++LL      G       +++G   LH+AA        + LLD     +       
Sbjct: 2   AQVISDLLAQ----GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 57

Query: 176 ATPLVSAAT--------------------------------RGHTAVVNELLSKDGGLLE 203
                + A                                 R     + E L      + 
Sbjct: 58  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 117

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
            + ++GK ALH+AA   + + V  L           D K +T L +A +  S E  K LL
Sbjct: 118 AADNSGKTALHWAAAVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
           +  A    + D        VA+ +   +IV  LL
Sbjct: 177 DNFANR-EITDHMDRLPRDVASERLHHDIV-RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.7 bits (135), Expect = 8e-10
 Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 3/197 (1%)

Query: 66  VKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNEL 125
           +     +  +T LHLAA+     A K++L         + +G           +  V ++
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQI 74

Query: 126 LKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 185
           L  +    L  +   G  PL +AA      +V+ L+  D  ++     S  T L  AA  
Sbjct: 75  LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAV 133

Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
            +T  VN LL       +      +  L  AAR+G  +  KALL         TD   + 
Sbjct: 134 NNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRL 191

Query: 246 ALHMAVKGQSCEVVKLL 262
              +A +    ++V+LL
Sbjct: 192 PRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
           + +V+  LL   A +    DK G T+LH+A R  R +    L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           V+++LL++   L       G+ +LH AAR    D  K LL        + +         
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309
                       +L  + A  +       T   +   +   E + E L   D ++NA   
Sbjct: 64  VAADAMGVFQ--ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 310 DHKTAL 315
             KTAL
Sbjct: 122 SGKTAL 127

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 42/196 (21%), Positives = 59/196 (30%), Gaps = 36/196 (18%)

Query: 156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD----------------- 198
           ++  LL     L+ T   +  T L  AA          LL                    
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 199 ----------------GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK 242
                              L     +G   L  AAR     +V+ L++ D  +    D  
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNS 122

Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
           G+TALH A    + E V +LL   A      D    T L +A R+   E    LL     
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFLAAREGSYEASKALLDN-FA 180

Query: 303 NVNALTRDHKTALDIA 318
           N        +   D+A
Sbjct: 181 NREITDHMDRLPRDVA 196

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 4e-12
 Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 35/242 (14%)

Query: 75  DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
           D+ LHLA    +     +++  +          A             +N           
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGD------LAF------------LNF---------- 34

Query: 135 TRKNRSGFDPLHIAA----VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAV 190
             +N     PLH+A      +   A++    D +    +   P +               
Sbjct: 35  --QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 92

Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250
            +        +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TALH+A
Sbjct: 93  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 152

Query: 251 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 310
           V  Q+ ++V LLL+  A +       G +   +   +  T I  +L  L   N+  L   
Sbjct: 153 VDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

Query: 311 HK 312
             
Sbjct: 212 ED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 14/219 (6%)

Query: 141 GFDPLHIAAVQGHHA----IVQVLLDHDPSLSQTTGPSNATPLVSAA----TRGHTAVVN 192
           G   LH+A +    A    +++ +      L+        TPL  A          A++ 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLG 60

Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
                +      +                V            + + T+  G T LH+A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
                +V+LL+   A +       G TALH+A   +  ++V+ LL     +VN +T    
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGY 179

Query: 313 TALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE 351
           +   +         ++ I+  L +        L +  DE
Sbjct: 180 SPYQLT----WGRPSTRIQQQLGQLTLENLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 208 NGKNALHFAARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAVKGQSC 256
           +G + LH A       +   ++ +   D       +   QT LH+AV     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            L  AA  G    V++L+ +    +     ++   L +      T  V            
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS----R 60

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
            +R+         A       +  +L K        D    TALH A +    EVV+LL 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL- 119

Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
               A V    KF  TA  ++      ++  E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLA-EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 6/154 (3%)

Query: 76  TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
            +L  AA+ G    V+ ++  G                     +    +           
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
                         A    HA +  +L    +          T L  A    H  VV EL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-EL 118

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
           L K G  +       K A   +   G+ D+ + L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 30/137 (21%), Positives = 42/137 (30%), Gaps = 31/137 (22%)

Query: 212 ALHFAARQGHVDVVKALLSKDPQLAR------------------------------RTDK 241
            L  AAR G  D V+ L++                                         
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 301
           K           +    +  +L    A V   D    TALH AT     E+V ELL    
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYG 123

Query: 302 TNVNALTRDHKTALDIA 318
            +V+  ++  KTA DI+
Sbjct: 124 ADVHTQSKFCKTAFDIS 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 40/128 (31%)

Query: 211 NALHFAARQGHVDVVKALLSK-----DPQLARRTDKKGQTALHMAVK---GQSCEVVKLL 262
           ++L  A +   +  +    +      +        +  +TALH+AV+     S  +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 263 LEADA--------------------------------AIVMLPDKFGNTALHVATRKKRT 290
           ++                                   A + + ++ G T L +A R K  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 291 EIVTELLS 298
                L  
Sbjct: 128 HCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 10/145 (6%)

Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TPL---VSAATRGHTA 189
             +    L  A        +         L++    +N      T L   V +  R    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
           +V+ L+          ++   +                LL +        ++ G+T L +
Sbjct: 63  IVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 250 AVKGQSCEVVKLLLEADAAIVMLPD 274
           A + +     +LL +A +       
Sbjct: 121 AKRLKHEHCEELLTQALSGRFNSHV 145

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 5e-08
 Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 76  TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
            EL  AA RGDL  +  +L   ++   V   +G            +              
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 59

Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
             K+R+GF  +H AA  G    +Q LL+    ++      N      AA  GH  VV  L
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFL 118

Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
           +      +      G  A   A   G  +VV  + + 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 8e-08
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 202
           + L  AA +G    +  LL ++ +++   G       V        A    L   +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP--- 59

Query: 203 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
           ++    G   +H AAR G +D ++ LL     +    ++        A +G    V  L+
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
            +  A+ V   +  G+TA  +A    R E+V+ + +
Sbjct: 120 -KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEA 265
            + KG TA  +A      EVV L+   
Sbjct: 129 RNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 6e-08
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 6/160 (3%)

Query: 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
           R+G D L  AA +G    V+ LL  +            T L           +  L    
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 258
                  +     +    A +        +L +        D  G   +H+AV+     V
Sbjct: 60  S---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 259 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
           V  L     + +   D  G T L +A ++   ++V  L  
Sbjct: 117 VSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 72  RHNDTELHLAAQRGDLGAVKQIL--YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYS 129
           R  D  L  AA RGD+  V+++L    +      +       T +  +        L+  
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHRELVHP----DALNRFGKTALQVMMFGSTAIALELL 55

Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA 189
            +        +        A +        +L    +       + A P+  A   GHTA
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 190 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
           VV+ L ++    L    + G   L  A ++G  D+V  L  
Sbjct: 116 VVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
           L R++  G  PL +A  +G   +V +L  H
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 33/141 (23%)

Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA- 267
             + L  AA +G V  V+ LL ++       ++ G+TAL + + G +   ++LL +  + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 268 ------------------------------AIVMLPDKFGNTALHVATRKKRTEIVTELL 297
                                         A V +PD  G   +H+A ++  T +V+ L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 298 SLPDTNVNALTRDHKTALDIA 318
           +  D  ++       T L++A
Sbjct: 122 AESD--LHRRDARGLTPLELA 140

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 4/128 (3%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
            L  ++++G   +VQ ++      S            +        V      + G  + 
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL--VQFGVNVN 61

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA--LHMAVKGQSCEVVKL 261
            + S+G   LH AA   +V V K L+     +   T    QTA      ++    +  + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 262 LLEADAAI 269
           L      +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 34/121 (28%)

Query: 213 LHFAARQGHVDVVKALLSK--------------------------------DPQLARRTD 240
           L  ++ +G  D+V+ ++ +                                        D
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 241 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA--LHVATRKKRTEIVTELLS 298
             G T LH A    + +V K L+E+ AA+  +      TA        +  T+    L  
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 299 L 299
           +
Sbjct: 125 V 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 6e-07
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 3/123 (2%)

Query: 143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 202
           D L  AA +G    V+ LL+   + +           V        A +  L   +    
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 203 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
           + +                  VV     +        D  G+  + +A +    +V + L
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVL---HRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 263 LEA 265
             A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 9e-07
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 31/121 (25%)

Query: 209 GKNALHFAARQGHVDVVKALLS-------------------------------KDPQLAR 237
             + L  AA +G V+ V+ALL                                       
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
             D    T        +      ++L    A + + D +G   + +A      ++   L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 298 S 298
           +
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 4/124 (3%)

Query: 74  NDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
           +   L  AA RG +  V+ +L  G +     +         +          LL  +   
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
                  +               +V         +    G     P+  A   GH  V  
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG---RLPVDLAEELGHRDVAR 119

Query: 193 ELLS 196
            L +
Sbjct: 120 YLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
               A   G    V+  +     +++T          +A       +        G  + 
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL--LLKGADIN 62

Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
               +    L  A  +GHV  VK LLSK      +    G TAL         + +K LL
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTALEAT----DNQAIKALL 117

Query: 264 E 264
           +
Sbjct: 118 Q 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 35/118 (29%)

Query: 211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL--------- 261
               +A + G +D VK  ++K   + R  +   +   + A  GQ   +  L         
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 262 ----------------------LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
                                 LL +  A   +    G TAL         + +  LL
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	568
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=277.78  Aligned_cols=220  Identities=27%  Similarity=0.371  Sum_probs=198.7

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358           74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH  153 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~  153 (568)
                      +++.|+.+|+.|+++.|+.+|.                                 ..+..++.+|..|+||||+|+..|+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~---------------------------------~~~~~~~~~D~~G~TpLh~Aa~~g~   49 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESIL---------------------------------ADKSLATRTDQDSRTALHWACSAGH   49 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHH---------------------------------HCGGGGGCCCTTSCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHH---------------------------------hCCCcCcCcCCCCCCHHHHHHHhhh
Confidence            3578999999999999988885                                 2344578889999999999999999


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCC
Q 008358          154 HAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP  233 (568)
Q Consensus       154 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  233 (568)
                      .+++++|++.+... ...+..+.++++.++..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|+++|.
T Consensus        50 ~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~-~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~  127 (223)
T d1uoha_          50 TEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA  127 (223)
T ss_dssp             HHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             hccccccccccccc-ccccccccccccccccccccchhHHHhcc-CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCC
Confidence            99999999999887 56677889999999999999999999998 46788999999999999999999999999999999


Q ss_pred             ccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCC
Q 008358          234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT  313 (568)
Q Consensus       234 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T  313 (568)
                      ++ +..|..|.||||+|+..++.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|+|
T Consensus       128 d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~t  204 (223)
T d1uoha_         128 NP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKT  204 (223)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCC
T ss_pred             CC-CCcCCCCCccchhhhhcCCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCC
Confidence            87 78899999999999999999999999999999 89999999999999999999999999999 79999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHHHH
Q 008358          314 ALDIAEGLPSSEEASEIKDCLAR  336 (568)
Q Consensus       314 ~L~~A~~~~~~~~~~~i~~~L~~  336 (568)
                      |||+|.. +    ..++++.|++
T Consensus       205 pl~~A~~-~----~~~i~~~Ll~  222 (223)
T d1uoha_         205 PLQVAKG-G----LGLILKRMVE  222 (223)
T ss_dssp             HHHHCCT-T----HHHHHHHHHC
T ss_pred             HHHHHHC-C----CHHHHhcccC
Confidence            9999842 2    3456666653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-35  Score=277.70  Aligned_cols=225  Identities=23%  Similarity=0.250  Sum_probs=201.5

Q ss_pred             ChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCH
Q 008358           75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH  154 (568)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~  154 (568)
                      .||||.||+.|+.+.|+.||+.                                 .+..++.+|.+|+||||+|+..|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~---------------------------------~~~~~~~~d~~G~TpL~~A~~~g~~   47 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHS---------------------------------KPSLLLQKDQDGRIPLHWSVSFQAH   47 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH---------------------------------CGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHc---------------------------------CCCcccccCCCCCCHHHHHHHcCCc
Confidence            3899999999999999999852                                 2345778899999999999999999


Q ss_pred             HHHHHHHhcCCCCc--ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358          155 AIVQVLLDHDPSLS--QTTGPSNATPLVSAATRGHTAVVNELLSKDGG-LLEISRSNGKNALHFAARQGHVDVVKALLSK  231 (568)
Q Consensus       155 ~iv~~Ll~~~~~~~--~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  231 (568)
                      +++++|+++|+++.  ...+..|.+|+|+++..+..++++.++..+.. .....+..+.|+++.++..++.++++.|++.
T Consensus        48 ~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          48 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             HHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            99999999998864  35677899999999999999999999877543 3455677899999999999999999999999


Q ss_pred             CCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCC
Q 008358          232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH  311 (568)
Q Consensus       232 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G  311 (568)
                      +... ...|..|+||||+|+..|+.+++++|++.+...++.+|.+|+||||+|+..|+.+++++|++..|++++.+|.+|
T Consensus       128 ~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         128 GASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             TCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             cccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            9887 677999999999999999999999999998776899999999999999999999999999975799999999999


Q ss_pred             CCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358          312 KTALDIAEGLPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       312 ~T~L~~A~~~~~~~~~~~i~~~L~~~ga~  340 (568)
                      +||||+|+.       .+++++|++.|++
T Consensus       207 ~t~l~~A~~-------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         207 AKAEDVALN-------EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCTGGGCSC-------HHHHHHHHHHCCC
T ss_pred             CCHHHHHhh-------HHHHHHHHHcCCC
Confidence            999999974       3688999999975

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-35  Score=282.62  Aligned_cols=236  Identities=21%  Similarity=0.181  Sum_probs=182.7

Q ss_pred             hcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHH
Q 008358           69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIA  148 (568)
Q Consensus        69 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~A  148 (568)
                      ..+++|.||||.||+.|+.+++++||+...                               ....++.+|..|+||||+|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a-------------------------------~~~~i~~~~~~g~TpL~~A   52 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSA-------------------------------GHEYLDLQNDLGQTALHLA   52 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHT-------------------------------TSGGGGCCCTTSCCHHHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCC-------------------------------CcccccCcCCCCCCccchH
Confidence            467899999999999999999999996211                               1123677889999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc---------CcCCChH---HHHH
Q 008358          149 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------RSNGKNA---LHFA  216 (568)
Q Consensus       149 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~tp---Lh~A  216 (568)
                      +..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.|++.........         +..+.+.   +...
T Consensus        53 ~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (255)
T d1oy3d_          53 AILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD  131 (255)
T ss_dssp             HHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------
T ss_pred             Hhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHH
Confidence            9999999999999999998 6789999999999999999999999987743321110         0111111   1111


Q ss_pred             HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      ...........+........+.+|.+|+||||+|+..++.+++++|++.+++.....+..|.||||+|++.|+.+++++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~L  211 (255)
T d1oy3d_         132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL  211 (255)
T ss_dssp             ------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHH
Confidence            11111111222222222223678899999999999999999999999999997777788999999999999999999999


Q ss_pred             hcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358          297 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  341 (568)
Q Consensus       297 l~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~  341 (568)
                      ++ .|++++.+|.+|+||||+|+..++.    +++++|+++||..
T Consensus       212 l~-~gadin~~d~~g~t~L~~A~~~~~~----~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         212 LK-AGADPTARMYGGRTPLGSALLRPNP----ILARLLRAHGAPE  251 (255)
T ss_dssp             HH-TTCCTTCCCTTSCCHHHHHHTSSCH----HHHHHHHHTTCCC
T ss_pred             HH-CCCCCCCCCCCCCCHHHHHHHCCCH----HHHHHHHHcCCCC
Confidence            99 8999999999999999999998764    7899999999964

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=291.61  Aligned_cols=297  Identities=25%  Similarity=0.319  Sum_probs=241.5

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCc--------------
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTK--------------  131 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~--------------  131 (568)
                      .+..|..|.||||+||+.|+.+++++||+ +.+.+..+..+.+++++|+..++.++++.|+.....              
T Consensus        26 in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  105 (408)
T d1n11a_          26 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI  105 (408)
T ss_dssp             SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhh
Confidence            45567888899999999999999999986 566666666777888888888888888877653221              


Q ss_pred             -----------------ccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q 008358          132 -----------------EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL  194 (568)
Q Consensus       132 -----------------~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~L  194 (568)
                                       ...+..+..|.++|+.|+..++.++++.|+++|.++ +..+..|.+|||+|+..|+.+++++|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~~~L~~A~~~~~~~~~~~L  184 (408)
T d1n11a_         106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLL  184 (408)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCcCchHHHHHHHcCCHHHHHHH
Confidence                             223445666777777887778888888888888877 56777888888888888888888888


Q ss_pred             HHcCCCCccc---------------------------------cCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCC
Q 008358          195 LSKDGGLLEI---------------------------------SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK  241 (568)
Q Consensus       195 l~~~~~~~~~---------------------------------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  241 (568)
                      ++++. +++.                                 .+.+|.||||.|+..++.++++.+++.+... +..|.
T Consensus       185 l~~g~-~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~  262 (408)
T d1n11a_         185 LPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK  262 (408)
T ss_dssp             GGGTC-CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT
T ss_pred             HhcCC-cccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccC
Confidence            87633 3332                                 3455667777777788888888888877665 56788


Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 008358          242 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  321 (568)
Q Consensus       242 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~  321 (568)
                      .|.||||.|+..++.+++++|+++|++ ++..+..+.||||.|+..++.++++++++ .|+++|.+|.+|+||||+|++.
T Consensus       263 ~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         263 SGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHc
Confidence            999999999999999999999999999 78889999999999999999999999999 7999999999999999999987


Q ss_pred             CCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHhhh
Q 008358          322 PSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRR  372 (568)
Q Consensus       322 ~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  372 (568)
                      ++    .+++++|+++|+..+..++.++++++.++...+.++.+.|+....
T Consensus       341 g~----~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~  387 (408)
T d1n11a_         341 GH----TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD  387 (408)
T ss_dssp             TC----HHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCC
T ss_pred             CC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHh
Confidence            65    478999999999999888899999999998888888877765443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=276.66  Aligned_cols=284  Identities=27%  Similarity=0.318  Sum_probs=220.2

Q ss_pred             ChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358           75 DTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH  153 (568)
Q Consensus        75 ~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~  153 (568)
                      .||||+||..|+.++|++||+ +.+.+..+..+.+|+|+|+..++.++++.||+.  +++++.+|.+|+||||+|+..|+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--gadi~~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCC
Confidence            399999999999999999997 456666777788999999999999999999976  45789999999999999999999


Q ss_pred             HHHHHHHHhcCCCCc--------------------------------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 008358          154 HAIVQVLLDHDPSLS--------------------------------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGL  201 (568)
Q Consensus       154 ~~iv~~Ll~~~~~~~--------------------------------~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~  201 (568)
                      .+++++|+..+++..                                ...+..+.++++.|+..++.++++.|+++ +..
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~-~~~  157 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAH  157 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            999999998765431                                23456788999999999999999999998 567


Q ss_pred             ccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCC---------------------------------CCHHH
Q 008358          202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG---------------------------------QTALH  248 (568)
Q Consensus       202 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g---------------------------------~t~Lh  248 (568)
                      ++..+.+|.+|||+|+..|+.+++++|+++|+++ +..+..|                                 .||||
T Consensus       158 ~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence            7888999999999999999999999999998775 4444444                                 45555


Q ss_pred             HHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhH
Q 008358          249 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS  328 (568)
Q Consensus       249 ~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~  328 (568)
                      .|+..++.++++.+++.+.. .+..|..|.||||.|+..++.+++++|++ .|++++..+..+.||||.+...+..    
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~~t~L~~~~~~~~~----  310 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNI----  310 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCS----
T ss_pred             HHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHH-CCCccccccccccccchhhcccCcc----
Confidence            55555555666666555555 55566667777777777777777777776 6777777777777777777665543    


Q ss_pred             HHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHh
Q 008358          329 EIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLE  368 (568)
Q Consensus       329 ~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  368 (568)
                      ++++.+.+.|+..+..+..+.++++.+++....++.+.|-
T Consensus       311 ~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll  350 (408)
T d1n11a_         311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL  350 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             eeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4556666667766666666677777776666656555544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=6.7e-33  Score=273.77  Aligned_cols=210  Identities=25%  Similarity=0.343  Sum_probs=179.7

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      .|.|+||.||..|+.++|++||+.                                  +++++.+|.+|+||||+|+..|
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~----------------------------------Gadvn~~d~~G~T~L~~A~~~g   84 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLER----------------------------------GADINYANVDGLTALHQACIDD   84 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH----------------------------------CCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHC----------------------------------CCCCCccCCCCCcHHHHHHhcC
Confidence            345999999999999999999952                                  4456777888888888888888


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD  232 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  232 (568)
                      +.++|++|+++|++. ...+..+.+||+.|+..++.++++.|+++ +...+..|..|.+|+++|+..++.+.++.++...
T Consensus        85 ~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~  162 (291)
T d1s70b_          85 NVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ  162 (291)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred             Cceeeeeeccccccc-ccccccccccccccccccccchhhccccc-CcccccccccCccccccccccccchhcccccccc
Confidence            888888888888886 56677788888888888888888888887 4556677888888888888888888887777532


Q ss_pred             Cc--------------------------cccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 008358          233 PQ--------------------------LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR  286 (568)
Q Consensus       233 ~~--------------------------~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~  286 (568)
                      ..                          .....+..|.||||.|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~  241 (291)
T d1s70b_         163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAH  241 (291)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             ccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHH
Confidence            11                          1234577899999999999999999999999999 88999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 008358          287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  320 (568)
Q Consensus       287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~  320 (568)
                      .|+.++|++|++ +|+|++.+|.+|+||||+|++
T Consensus       242 ~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         242 WGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999 899999999999999999974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.3e-31  Score=254.22  Aligned_cols=198  Identities=27%  Similarity=0.385  Sum_probs=179.4

Q ss_pred             hhhhHhhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCC
Q 008358           62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSG  141 (568)
Q Consensus        62 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g  141 (568)
                      ......+.+|.+|+||||+||..|+.+++++|++..                                  ......+..+
T Consensus        25 ~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~----------------------------------~~~~~~~~~~   70 (223)
T d1uoha_          25 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG----------------------------------VPVNDKDDAG   70 (223)
T ss_dssp             HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT----------------------------------CCSCCCCTTC
T ss_pred             hCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccc----------------------------------cccccccccc
Confidence            344566778999999999999999999999998522                                  2233446678


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358          142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  221 (568)
Q Consensus       142 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  221 (568)
                      .++++.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..++
T Consensus        71 ~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~  148 (223)
T d1uoha_          71 WSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGN  148 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCC
Confidence            89999999999999999999999998 67899999999999999999999999988 56788899999999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          222 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       222 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      .++++.|++.+.++ +..|.+|+||||.|+..|+.+++++|+++|++ ++.+|.+|+||||+| ..|+.+++++|++
T Consensus       149 ~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         149 LKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             cchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999987 78899999999999999999999999999999 899999999999998 4799999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.5e-32  Score=268.89  Aligned_cols=234  Identities=24%  Similarity=0.306  Sum_probs=187.7

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      .+|.||||+||..|+.++|+.|+.                        ...+.++  ..++++|.+|.+|+||||+|+..
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~------------------------~~~~~~l--~~Gadvn~~d~~G~TpLh~A~~~   84 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIV------------------------HEAKECI--AAGADVNAMDCDENTPLMLAVLA   84 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHH------------------------HHHHHHH--HTCCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHh------------------------cchhHHH--HcCCCccccCCCCCeeecccccc
Confidence            346677777777777777666663                        1122333  24678999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCccccCcCCChHHHHHHHcCCHH---HHH
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLLEISRSNGKNALHFAARQGHVD---VVK  226 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g~~~---iv~  226 (568)
                      |+.++|++|+++|+++ +..|..|.|||++|+..++.++++.+.....  ...+..+..+.++.+.+...+..+   .+.
T Consensus        85 g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (277)
T d2fo1e1          85 RRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK  163 (277)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred             cccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccc
Confidence            9999999999999998 6788999999999999999999998876532  234566788999999999877543   444


Q ss_pred             HHHcCCCc-------cccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358          227 ALLSKDPQ-------LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  299 (568)
Q Consensus       227 ~Ll~~~~~-------~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  299 (568)
                      .+.+....       .....+..|+||||.++..++.+++++++.......+.+|..|+||||+|+..|+.+++++|++ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-  242 (277)
T d2fo1e1         164 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-  242 (277)
T ss_dssp             HHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             ccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence            44433221       1234567899999999999999999987765555488899999999999999999999999999 


Q ss_pred             CCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHc
Q 008358          300 PDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  337 (568)
Q Consensus       300 ~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~  337 (568)
                      .|+|+|.+|.+|+||||+|++.++.    +++++|.++
T Consensus       243 ~gadin~~d~~G~T~L~~A~~~~~~----~iv~lL~~c  276 (277)
T d2fo1e1         243 QGASVEAVDATDHTARQLAQANNHH----NIVDIFDRC  276 (277)
T ss_dssp             TTCCSSCCCSSSCCHHHHHHHTTCH----HHHHHHHTT
T ss_pred             CcCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHHh
Confidence            8999999999999999999998864    677777654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.8e-30  Score=252.59  Aligned_cols=263  Identities=26%  Similarity=0.338  Sum_probs=225.2

Q ss_pred             CChHhHHHHHcCCHHHHHHHHhc-CCccccc-cCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           74 NDTELHLAAQRGDLGAVKQILYG-IDSQMVG-NLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        74 g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      ++|+||.|++.|+.++|++||+. .+.+... ..+.+|+++|+..++.++++.|++.+  ...+..+..+.+|.+.|+..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~--~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccc--ccccccccccchhhHHHhhc
Confidence            45999999999999999999985 4444443 35678999999999999999998654  45666788899999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---------ccccCcCCChHHHHHHHcCCH
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQGHV  222 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~  222 (568)
                      +..+....++++..+. ...+..+.++++.|+..|+...++.++......         ....+..|.||||+|++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          83 GSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence            9999999999998776 567888999999999999999999998763321         123456799999999999999


Q ss_pred             HHHHHHHcC-CCccccccCCCCCCHHHHHHhC----CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          223 DVVKALLSK-DPQLARRTDKKGQTALHMAVKG----QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       223 ~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~----~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      +++++|++. +.++ +..+..|.++++.+...    +..+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus       162 ~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         162 EVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            999999976 5555 78899999998877643    345799999999999 7889999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccc
Q 008358          298 SLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANEL  345 (568)
Q Consensus       298 ~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~  345 (568)
                      +..|+++|.+|.+|+||||+|++.++.    +++++|+++||+.+..+
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~~~~~----eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCCSS
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCccc
Confidence            878999999999999999999998764    79999999999876543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-30  Score=242.50  Aligned_cols=218  Identities=25%  Similarity=0.299  Sum_probs=193.9

Q ss_pred             CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358           72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ  151 (568)
Q Consensus        72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~  151 (568)
                      ++|+||||+||..|+.++++.|++                            .++  ..+.+++.+|..|+||||+|+..
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~----------------------------~~~--~~g~~in~~d~~g~TpL~~A~~~   50 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVN----------------------------LFQ--QGGRELDIYNNLRQTPLHLAVIT   50 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHH----------------------------HHH--HTTCCSCCCCTTSCCHHHHHHHT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHH----------------------------HHH--HCCCCCCccCCCCCccceehhcc
Confidence            479999999999999999999984                            111  23567889999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CccccCcCCChHHHHHHHcCCHHHHHHH
Q 008358          152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDVVKAL  228 (568)
Q Consensus       152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~L  228 (568)
                      |+.++++.|+++|++. +..+..|.++++.|...++.++++.+......   ..+.....+.++||.+.........+.|
T Consensus        51 ~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  129 (228)
T d1k1aa_          51 TLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL  129 (228)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccc-cccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhh
Confidence            9999999999999987 67788899999999999999999888765332   2344556788999999999999999999


Q ss_pred             HcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccccc
Q 008358          229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT  308 (568)
Q Consensus       229 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d  308 (568)
                      .....+.....+..|.++||.|+..+..++++.+++.|.+ .+.+|..|+||||+|+..|+.+++++|++ .|+|+|.+|
T Consensus       130 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d  207 (228)
T d1k1aa_         130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKN  207 (228)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCC
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCC
Confidence            9988887677788999999999999999999999999988 78899999999999999999999999999 799999999


Q ss_pred             CCCCCHHHHHhhCC
Q 008358          309 RDHKTALDIAEGLP  322 (568)
Q Consensus       309 ~~G~T~L~~A~~~~  322 (568)
                      .+|+||||+|++.+
T Consensus       208 ~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         208 CHNDTPLMVARSRR  221 (228)
T ss_dssp             TTSCCTTTTCSSHH
T ss_pred             CCCCCHHHHHHhCC
Confidence            99999999998643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.9e-31  Score=249.24  Aligned_cols=194  Identities=26%  Similarity=0.312  Sum_probs=122.6

Q ss_pred             CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358           73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG  152 (568)
Q Consensus        73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g  152 (568)
                      +|+||||+|+..|+.++++.|++...                              ..+.++|.+|.+|+||||+|+..|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~------------------------------~~~~~in~~d~~g~TpLh~A~~~~   50 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVK------------------------------GDLAFLNFQNNLQQTPLHLAVITN   50 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----------------------------------CCCCCCCCTTCCCHHHHHHHTT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHH------------------------------hCCCCcccCCCCCCcccccccccc
Confidence            57888888888888776666653111                              124557778888888888888888


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CccccCcCCChHHHHHHHcCCHHHHHH
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHVDVVKA  227 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~  227 (568)
                      +.+++++|+++|+++ ...|..|.|||++|+..|+.++++.|++....     ........|.||||.|+..++.+++++
T Consensus        51 ~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  129 (221)
T d1iknd_          51 QPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  129 (221)
T ss_dssp             CHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheee
Confidence            888888888888887 56778888888888888888888888776322     112223345555555555555555555


Q ss_pred             HHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       228 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      |+..+.......+.+|+||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++
T Consensus       130 l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         130 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             ecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            55555554333344555555555555555555555555555 45555555555555555555555555554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.2e-30  Score=241.29  Aligned_cols=194  Identities=25%  Similarity=0.312  Sum_probs=166.2

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHH
Q 008358          140 SGFDPLHIAAVQGHHA----IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  215 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  215 (568)
                      +|+||||+|+..|+.+    +++.+...++++ +..|..|+||||+|+..|+.+++++|++. +.+++..|.+|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccc-ccccccccccccccccc
Confidence            5999999999999964    455566678787 67899999999999999999999999988 56788999999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCcc-----ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358          216 AARQGHVDVVKALLSKDPQL-----ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  290 (568)
Q Consensus       216 A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~  290 (568)
                      |+..|+.++++.|++.+...     ......+|.||||.|+..++.+++++|++.|+.+....+.+|+||||+|++.|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            99999999999999875432     2445567899999999999999999999999996666678899999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358          291 EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  340 (568)
Q Consensus       291 ~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~  340 (568)
                      +++++|++ +|+|++.+|.+|+||||+|+..++.    ++++.|.+.+..
T Consensus       159 ~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~----~~~~~l~~~~~~  203 (221)
T d1iknd_         159 DLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPST----RIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCH----HHHHHHHTTSCG
T ss_pred             HHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCH----HHHHHHHHcCCc
Confidence            99999999 8999999999999999999987654    666666666554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.9e-28  Score=236.80  Aligned_cols=234  Identities=23%  Similarity=0.241  Sum_probs=201.3

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhc-CCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYG-IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      +..|.||||+|+..|+.++++.|++. ............+...+...+..+.....+....  +....+..|.|+|+.|+
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~a~  113 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAA  113 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCBCTTCCBHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcc--cccccccCCCchhHHHH
Confidence            45799999999999999999999974 3444444556778888888888888888886543  34456788999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcc---------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358          150 VQGHHAIVQVLLDHDPSLSQ---------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  220 (568)
Q Consensus       150 ~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  220 (568)
                      ..|+..+++.++....+...         ..+..|.||||+|+..|+.+++++|+++.+.+++..+..|.++++.+...+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~  193 (285)
T d1wdya_         114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             HhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccc
Confidence            99999999999988666421         234568999999999999999999999888889999999999988876543


Q ss_pred             ----CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHc-CCccccCCCCCCChHHHHHHHcCcHHHHHH
Q 008358          221 ----HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA-DAAIVMLPDKFGNTALHVATRKKRTEIVTE  295 (568)
Q Consensus       221 ----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~  295 (568)
                          ..+++++|+++|+++ +..|..|.||||.|++.|+.+++++|++. |++ ++.+|.+|+||||+|++.|+.+++++
T Consensus       194 ~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         194 DDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence                457999999999997 77899999999999999999999999986 667 89999999999999999999999999


Q ss_pred             HhcCCCCCcccccC
Q 008358          296 LLSLPDTNVNALTR  309 (568)
Q Consensus       296 Ll~~~g~~~~~~d~  309 (568)
                      ||+ .|+|+|++|.
T Consensus       272 Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         272 LCK-RGASTDCGDL  284 (285)
T ss_dssp             HHH-HSSCSCCSSC
T ss_pred             HHH-CCCCCCcccC
Confidence            999 8999999884

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.1e-29  Score=240.69  Aligned_cols=201  Identities=24%  Similarity=0.280  Sum_probs=157.1

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH  146 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh  146 (568)
                      .+..+..|.||||+||..|+.++++.|++                                  .+++++.+|.+|+||||
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~----------------------------------~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYA----------------------------------AGAGVLVAERGGHTALH   83 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------------------------TTCCSSCCCTTSCCHHH
T ss_pred             ccCcCCCCCCccchHHhhccccccccccc----------------------------------ccccccccccccchhhh
Confidence            45567899999999999999999999985                                  24567888999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCcccCCC---------CCCc---HHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPSLSQTTGP---------SNAT---PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH  214 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~---------~g~t---pL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  214 (568)
                      +|+..|+.++++.|++.+.........         ...+   ++..............+....+...+.+|.+|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            999999999999999886543211110         0111   1111111111222222222334456778899999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHH
Q 008358          215 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  294 (568)
Q Consensus       215 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~  294 (568)
                      +|+..|+.+++++|++.+.+.....+..|.||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+..++.++++
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999999998777788999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHhcCCCCC
Q 008358          295 ELLSLPDTN  303 (568)
Q Consensus       295 ~Ll~~~g~~  303 (568)
                      +|++ +||+
T Consensus       243 ~Ll~-~Ga~  250 (255)
T d1oy3d_         243 LLRA-HGAP  250 (255)
T ss_dssp             HHHH-TTCC
T ss_pred             HHHH-cCCC
Confidence            9999 7996

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=9.8e-29  Score=241.38  Aligned_cols=197  Identities=22%  Similarity=0.242  Sum_probs=164.2

Q ss_pred             hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH
Q 008358           67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH  146 (568)
Q Consensus        67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh  146 (568)
                      .+.+|.+|.||||+|++.|+.++|++||+                                  .+++++.+|.+|+|||+
T Consensus        67 vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~----------------------------------~Gad~n~~~~~g~t~l~  112 (277)
T d2fo1e1          67 VNAMDCDENTPLMLAVLARRRRLVAYLMK----------------------------------AGADPTIYNKSERSALH  112 (277)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------------------------TTCCSCCCCTTCCCHHH
T ss_pred             ccccCCCCCeeeccccccccccccccccc----------------------------------ccccccccccccccccc
Confidence            45688999999999999999999999985                                  24567788999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCC--CcccCCCCCCcHHHHHHHcCCHH---HHHHHHHcCC-------CCccccCcCCChHHH
Q 008358          147 IAAVQGHHAIVQVLLDHDPS--LSQTTGPSNATPLVSAATRGHTA---VVNELLSKDG-------GLLEISRSNGKNALH  214 (568)
Q Consensus       147 ~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~Aa~~g~~~---~v~~Ll~~~~-------~~~~~~d~~g~tpLh  214 (568)
                      +|+..|+.++++.+...+..  .....+..+.++.+.+...+..+   .+..+.+...       ...+..+..|.||||
T Consensus       113 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  192 (277)
T d2fo1e1         113 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH  192 (277)
T ss_dssp             HHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred             chhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccc
Confidence            99999999999999876421  12456778889999999887644   3444443321       123445678999999


Q ss_pred             HHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHH
Q 008358          215 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  294 (568)
Q Consensus       215 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~  294 (568)
                      .++..++.++++.++.......+..|..|+||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.++|+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999877665555578899999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHhc
Q 008358          295 ELLS  298 (568)
Q Consensus       295 ~Ll~  298 (568)
                      +|++
T Consensus       272 lL~~  275 (277)
T d2fo1e1         272 IFDR  275 (277)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.4e-28  Score=228.93  Aligned_cols=209  Identities=26%  Similarity=0.277  Sum_probs=185.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc---cccCcCCChHHHHHHH
Q 008358          142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL---EISRSNGKNALHFAAR  218 (568)
Q Consensus       142 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~---~~~d~~g~tpLh~A~~  218 (568)
                      +||||+||..|+.++++.|++.++......|.+|.||||+|+..|+.+++++|++++. ++   +..+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME-NVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCT-TCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhc-ccccccccccccccccccccc
Confidence            5899999999999999999998766668899999999999999999999999999843 33   3567789999999999


Q ss_pred             cCCHHHHHHHHcCCCcc-ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358          219 QGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  297 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  297 (568)
                      .+..++++.++..+... ....+..+.|+++.++..++.+++++|++.|.+ .+.+|.+|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccccccc
Confidence            99999999999887654 345677899999999999999999999999998 7888999999999999999999999999


Q ss_pred             cCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH-cCcccccccCCChhHHHHHH
Q 008358          298 SLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR-CGAVRANELNQPRDELRKTV  356 (568)
Q Consensus       298 ~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~l~~~~  356 (568)
                      +..+.+++.+|.+|+||||+|+..++.    +++++|++ .|++.+..++.++++++.++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~----~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHG----DAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             ccccccccccccccCCchhhhcccccH----HHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            965689999999999999999997754    67788875 69988888888888887654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=5.8e-28  Score=225.85  Aligned_cols=206  Identities=26%  Similarity=0.308  Sum_probs=184.0

Q ss_pred             hHHHHHHhhhcCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 008358          119 SSVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  197 (568)
Q Consensus       119 ~~~v~~Ll~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~  197 (568)
                      .++|+.|++.  +++++. .|.+|+||||+||..|+.+++++|++.|+++ +..+..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            3567777764  445776 5889999999999999999999999999998 67889999999999999999988888777


Q ss_pred             CCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCC
Q 008358          198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  277 (568)
Q Consensus       198 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G  277 (568)
                      ...........|.++.+.+.........+.|...+.++ +..+..|+||||.++..+..++++.+++.+.+ ++..|.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-cccccccc
Confidence            66666667778999999999999999999999998887 67799999999999999999999999999999 78899999


Q ss_pred             ChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHH
Q 008358          278 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL  334 (568)
Q Consensus       278 ~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L  334 (568)
                      +||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|++.++.    +++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~----~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHH----DIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHH
T ss_pred             ccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCH----HHHhhc
Confidence            999999999999999999999 8999999999999999999998775    565554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=1.1e-27  Score=236.08  Aligned_cols=211  Identities=21%  Similarity=0.191  Sum_probs=187.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358          139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  218 (568)
Q Consensus       139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  218 (568)
                      .+|.|||+.||..|+.++|++|+++|+++ +..|.+|.||||+|+..|+.+++++|+++ +......+..+.+||+.|+.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccc-cccccccccccccccccccc
Confidence            44669999999999999999999999998 68899999999999999999999999998 45567778899999999999


Q ss_pred             cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCC-c-------------------------cccC
Q 008358          219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA-A-------------------------IVML  272 (568)
Q Consensus       219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~-------------------------~~~~  272 (568)
                      .++.++++.|++.+... ...|.+|.+++++|+..+..+.++.++.... +                         ....
T Consensus       116 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             ccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999999876 6789999999999999998888888875321 1                         1345


Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHH
Q 008358          273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDEL  352 (568)
Q Consensus       273 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l  352 (568)
                      .+..|.||||+|+..|+.++++.|++ .|+++|.+|.+|+||||+|+..++.    +++++|+++|++.+..++.+++++
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~----~iv~lLl~~Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKE----EACRILVENLCDMEAVNKVGQTAF  269 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             ccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHH
Confidence            67889999999999999999999999 8999999999999999999998764    788999999999888888888888


Q ss_pred             HHHHH
Q 008358          353 RKTVT  357 (568)
Q Consensus       353 ~~~~~  357 (568)
                      +.+.+
T Consensus       270 ~~A~e  274 (291)
T d1s70b_         270 DVADE  274 (291)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            77654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=4.4e-26  Score=212.93  Aligned_cols=190  Identities=27%  Similarity=0.370  Sum_probs=170.1

Q ss_pred             cCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358           70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA  149 (568)
Q Consensus        70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa  149 (568)
                      .|.+|.||||+||..|+.+++++|++                                  .+.+++.++..+.++++.++
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~----------------------------------~g~~~n~~~~~~~~~~~~~~   64 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLD----------------------------------AGADANSQDNTGRTPLHAAV   64 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHH----------------------------------TTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHh----------------------------------hccccccccccccccccccc
Confidence            47788899999999999999998884                                  24456778899999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHH
Q 008358          150 VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL  229 (568)
Q Consensus       150 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  229 (568)
                      ..++.....................|.++.+.+.........+.|... +.+++..+..|.|||+.++..+..++++.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~  143 (209)
T d1ot8a_          65 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILL  143 (209)
T ss_dssp             HTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeec
Confidence            999999888888877666566777888999999999999999988887 5667888999999999999999999999999


Q ss_pred             cCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          230 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       230 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      +.+.++ +..|.+|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.++|++|
T Consensus       144 ~~~~~~-~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         144 MHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccc-cccccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999887 77899999999999999999999999999999 889999999999999999999999975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-26  Score=203.36  Aligned_cols=154  Identities=25%  Similarity=0.351  Sum_probs=143.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCH
Q 008358          143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  222 (568)
Q Consensus       143 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  222 (568)
                      +|||+||..|+.++|+.|+++|+++ +..|..|.||||+|+ .|+.+++++|+++ +.+++..+.+|.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccc-ccccccccccCccccccccccccc
Confidence            7999999999999999999999998 778999999999886 7899999999998 567888999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC
Q 008358          223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD  301 (568)
Q Consensus       223 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  301 (568)
                      +.++.|++.+.+. +..|..|.+|||+|+..++.+++++|+++++...+.+|.+|+||||+|++.++.+++++|++ +|
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-NG  156 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TC
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh-cC
Confidence            9999999999887 77899999999999999999999999999986689999999999999999999999999998 44

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.8e-25  Score=198.07  Aligned_cols=150  Identities=28%  Similarity=0.358  Sum_probs=137.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358          142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  221 (568)
Q Consensus       142 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  221 (568)
                      .||||.|++.|+.++|+.||++|++..  .|..|+||||+|+..++.++++.++.... .....+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            499999999999999999999999863  68999999999999999999999988744 445667788899999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358          222 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  296 (568)
Q Consensus       222 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  296 (568)
                      .++++.++..+.+. +.+|.+|+||||+|+..|+.+++++|++.|++ ++.+|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999887 67899999999999999999999999999999 788999999999999999999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=197.87  Aligned_cols=154  Identities=27%  Similarity=0.341  Sum_probs=141.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHH
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA  155 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~  155 (568)
                      +|||.||..|+.++|+.|++                                  .+.+++.+|.+|+||||+|+ .|+.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~----------------------------------~g~d~n~~d~~g~TpL~~A~-~~~~e   47 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ----------------------------------NNVNVNAQNGFGRTALQVMK-LGNPE   47 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT----------------------------------SCCCTTCCCTTSCCHHHHCC-SSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH----------------------------------CCCCcCccCCcccccccccc-ccccc
Confidence            79999999999999999985                                  34567888999999999886 79999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc
Q 008358          156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  235 (568)
Q Consensus       156 iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  235 (568)
                      ++++|+++|+++ ...+..|.+|++.++..++.+.++.|++. +...+..|..|.+|||.|+..++.++++.|+++++..
T Consensus        48 i~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  125 (156)
T d1ihba_          48 IARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN  125 (156)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             cccccccccccc-ccccccCcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            999999999998 67889999999999999999999999988 5567888999999999999999999999999999866


Q ss_pred             ccccCCCCCCHHHHHHhCCCHHHHHHHHHcC
Q 008358          236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  266 (568)
Q Consensus       236 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g  266 (568)
                      .+.+|.+|+||||+|++.++.+++++|+++|
T Consensus       126 ~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            6888999999999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=203.01  Aligned_cols=216  Identities=29%  Similarity=0.301  Sum_probs=188.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh----cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHH
Q 008358          140 SGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  215 (568)
Q Consensus       140 ~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  215 (568)
                      +|+||||+||..|+.++|+.|++    .|.++ +..|..|+||||+|+..|+.+++++|+++ +...+..+.+|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccc-ccccccccccccccccc
Confidence            69999999999999999999885    68887 67889999999999999999999999998 56678888999999999


Q ss_pred             HHHcCCHHHHHHHHcCCCc---cccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHH
Q 008358          216 AARQGHVDVVKALLSKDPQ---LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  292 (568)
Q Consensus       216 A~~~g~~~iv~~Ll~~~~~---~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~i  292 (568)
                      |...++.++++.+......   ..+.......++||.+.........+.|.....+.....+..|.+|||.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            9999999999888765432   2244566788999999999999999999998888777788899999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhh
Q 008358          293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKD  362 (568)
Q Consensus       293 v~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~  362 (568)
                      ++.+++ .|.+++.+|..|.||||+|+..++.    +++++|+++|++.+..+..+.++++.++.....|
T Consensus       160 ~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         160 VQLLLQ-HGANVNAQMYSGSSALHSASGRGLL----PLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             hhhhhh-hccccccccccCcchHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            999999 8999999999999999999987654    7889999999998888888888887766554433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.9e-25  Score=195.23  Aligned_cols=151  Identities=28%  Similarity=0.366  Sum_probs=123.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCH
Q 008358          143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  222 (568)
Q Consensus       143 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  222 (568)
                      +.|+.||..|+.++|+.|++.++...+..|..|.||||+|+ .|+.+++++|+++ +.+++..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccc-cccccccccccccccccccccccc
Confidence            45888888888888888887644333677888888888876 4788888888887 456777788888888888888888


Q ss_pred             HHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       223 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      ++++.+++.++++ +.+|.+|+||||+|+..|+.+++++|+ .|++ ++.+|.+|+||||+|++.|+.+++++|++
T Consensus        82 ~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccccccccccccc-ccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888888888876 667888888888888888888888776 5777 67888888888888888888888888876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=3.8e-27  Score=238.26  Aligned_cols=235  Identities=20%  Similarity=0.155  Sum_probs=165.0

Q ss_pred             hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358           68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI  147 (568)
Q Consensus        68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~  147 (568)
                      ...+..|.||||+||+.|+.++++.+-.                             |+  ..+++++.+|.+|+||||+
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~-----------------------------L~--~~~~~in~~~~~g~taL~~  132 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCL-----------------------------LL--TSDEIVKVIQAENYQAFRL  132 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTT-----------------------------C----CCSSCC--CHHHHHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHH-----------------------------HH--hCCCcccccCCCCCCHHHH
Confidence            4567788999999999999888877521                             11  3456788899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--ccccCcCCChHHHHHHHcCCHHH
Q 008358          148 AAVQGHHAIVQVLLDHDPSLSQT-TGPSNATPLVSAATRGHTAVVNELLSKDGGL--LEISRSNGKNALHFAARQGHVDV  224 (568)
Q Consensus       148 Aa~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~i  224 (568)
                      ||+.||.++|++|+++|+++... .+.+|.||||+|+..||.++|++|++.+...  .+..+.+|.||+|.|+.+|+.++
T Consensus       133 Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~i  212 (346)
T d2ajaa1         133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV  212 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHH
Confidence            99999999999999999998432 2346899999999999999999999985432  23445677889999999999999


Q ss_pred             HHHHHcCCCcccc------ccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc-ccCCCC-------CCChHHHHHHHcCcH
Q 008358          225 VKALLSKDPQLAR------RTDKKGQTALHMAVKGQSCEVVKLLLEADAAI-VMLPDK-------FGNTALHVATRKKRT  290 (568)
Q Consensus       225 v~~Ll~~~~~~~~------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~-~~~~d~-------~G~TpLh~A~~~g~~  290 (568)
                      +++|++.|++...      .....+.++++.+...+..+....+.....+. .+..+.       .+.++|+.|+..++.
T Consensus       213 v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~l  292 (346)
T d2ajaa1         213 INFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL  292 (346)
T ss_dssp             HHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGH
T ss_pred             HHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChH
Confidence            9999999876521      11122334444444433333333232222210 111121       234788889999999


Q ss_pred             HHHHHHhcCCCC----CcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHc
Q 008358          291 EIVTELLSLPDT----NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  337 (568)
Q Consensus       291 ~iv~~Ll~~~g~----~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~  337 (568)
                      +++++|++....    +.+..+.+|+||||+|++.++.    +++++|++.
T Consensus       293 d~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~----e~v~lLL~~  339 (346)
T d2ajaa1         293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ----GACALLLSI  339 (346)
T ss_dssp             HHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT----THHHHHTTS
T ss_pred             HHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcH----HHHHHHhCC
Confidence            999999984322    2344556899999999998876    566676654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-24  Score=192.66  Aligned_cols=152  Identities=24%  Similarity=0.323  Sum_probs=140.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCH
Q 008358          177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  256 (568)
Q Consensus       177 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  256 (568)
                      ..|+.||..|+.++|+.||+.++.+++..|..|+||||+|+ .|+.+++++|++.+.++ +..+.+|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            56999999999999999999888899999999999999987 48899999999999987 77788999999999999999


Q ss_pred             HHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 008358          257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  336 (568)
Q Consensus       257 ~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~  336 (568)
                      ++++++++.|++ ++.+|.+|+||||+|+..|+.+++++|+.  |++++.+|.+|+||||+|+..++.    +++++|++
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~----~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQ----DLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCH----HHHHHHHT
T ss_pred             cccccccccccc-cccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCH----HHHHHHHh
Confidence            999999999999 88899999999999999999999998874  899999999999999999998775    67777775


Q ss_pred             c
Q 008358          337 C  337 (568)
Q Consensus       337 ~  337 (568)
                      +
T Consensus       155 h  155 (156)
T d1bd8a_         155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.8e-25  Score=220.17  Aligned_cols=184  Identities=16%  Similarity=0.173  Sum_probs=130.3

Q ss_pred             ccccccc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCccccC
Q 008358          131 KEGLTRK-NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT---AVVNELLSKDGGLLEISR  206 (568)
Q Consensus       131 ~~~~~~~-~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~---~~v~~Ll~~~~~~~~~~d  206 (568)
                      +.++|.. |.+|+||||+||..|+.++|++|+++|+++ +..|..|+||||.|+..++.   +.+..|++.........|
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            4456655 899999999999999999999999999998 67899999999999987752   222233333233456778


Q ss_pred             cCCChHHHHHHHcCC----HH--------HHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHH-----HHHcCCcc
Q 008358          207 SNGKNALHFAARQGH----VD--------VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL-----LLEADAAI  269 (568)
Q Consensus       207 ~~g~tpLh~A~~~g~----~~--------iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~-----Ll~~g~~~  269 (568)
                      ..|+||||.++..+.    ..        ++.+++..+..........+.++++.+........+..     ++..   .
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  251 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN---M  251 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH---T
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc---C
Confidence            999999999886543    22        34455566555545556667777777765544433332     2222   2


Q ss_pred             ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          270 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       270 ~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      +|.+|.+|+||||+|++.|+.++|++|++ .|+|++.+|++|+||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            67899999999999999999999999999 89999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.1e-23  Score=186.48  Aligned_cols=149  Identities=28%  Similarity=0.395  Sum_probs=134.1

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHH
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA  155 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~  155 (568)
                      ||||.||+.|+.++|+.||+.+                                  ++++ .|..|+||||+|+..++.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~g----------------------------------a~~~-~~~~g~t~L~~a~~~~~~~   48 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANG----------------------------------APFT-TDWLGTSPLHLAAQYGHFS   48 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHT----------------------------------CCCC-CCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcC----------------------------------CCcc-cccCCCccccccccccccc
Confidence            8999999999999999999632                                  2233 4788999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc
Q 008358          156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  235 (568)
Q Consensus       156 iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  235 (568)
                      +++.++...... ...+..+.++++.++...+.+++++++.+ +.+.+.+|.+|.||||+|+..|+.+++++|++.|+++
T Consensus        49 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~  126 (153)
T d1awcb_          49 TTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             HHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccccc-cccccccccccccccccccceeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCC
Confidence            999999988776 56677888999999999999999999988 5567888999999999999999999999999999988


Q ss_pred             ccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358          236 ARRTDKKGQTALHMAVKGQSCEVVKLL  262 (568)
Q Consensus       236 ~~~~d~~g~t~Lh~A~~~~~~~~v~~L  262 (568)
                       +..|.+|.||||+|+.+|+.+++++|
T Consensus       127 -~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         127 -HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence             77899999999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.3e-23  Score=206.16  Aligned_cols=173  Identities=17%  Similarity=0.217  Sum_probs=117.6

Q ss_pred             CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358           71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV  150 (568)
Q Consensus        71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~  150 (568)
                      |.+|+||||+||..|+.++|+.||+                                  .+++++.+|..|+||||.|+.
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~----------------------------------~gad~~~~d~~G~TpL~~A~~  149 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVK----------------------------------HGSNRLYGDNMGESCLVKAVK  149 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH----------------------------------TTCCTTBCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH----------------------------------CCCCCCcCCcccccHHHHhhh
Confidence            6777788888888888888877774                                  356678889999999999998


Q ss_pred             cCCH-------HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC----HH--------HHHHHHHcCCCCccccCcCCCh
Q 008358          151 QGHH-------AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH----TA--------VVNELLSKDGGLLEISRSNGKN  211 (568)
Q Consensus       151 ~g~~-------~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~----~~--------~v~~Ll~~~~~~~~~~d~~g~t  211 (568)
                      .++.       ++++++.+   .. ...|..|+||||+++..+.    ..        ++..+++............+.+
T Consensus       150 ~~~~~~~~~~~~ll~~l~~---~~-~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  225 (301)
T d1sw6a_         150 SVNNYDSGTFEALLDYLYP---CL-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES  225 (301)
T ss_dssp             SSHHHHTTCHHHHHHHHGG---GG-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------
T ss_pred             cccchhhhhHHHHHHHHhh---hh-hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccc
Confidence            7752       44555443   22 5568889999999887554    22        3445555555555555666777


Q ss_pred             HHHHHHHcCCHHHHHH-----HHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358          212 ALHFAARQGHVDVVKA-----LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  285 (568)
Q Consensus       212 pLh~A~~~g~~~iv~~-----Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~  285 (568)
                      +++.+........+..     ++..   ..+.+|.+|+||||+|++.|+.++|++|+++|++ ++.+|..|+||||+|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~---~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd-~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         226 KPNDKNGERKDSILENLDLKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----------CHHHHHCSHHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTC
T ss_pred             hhHHHHhcchHHHHHHHhhHHHHhc---CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHcC
Confidence            7777665544333332     2222   2367899999999999999999999999999999 8999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=172.03  Aligned_cols=119  Identities=22%  Similarity=0.280  Sum_probs=81.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCC-CHHHHHHhCC
Q 008358          176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQ  254 (568)
Q Consensus       176 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~  254 (568)
                      .++||+|+..|+.+++++|+++ +.+++..|.+|.||||.|+ .|+.+++++|+++|+++ +..|..|. ||||+|++.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHc-CCccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            3566666666666666666655 3455666666666666553 56667777777776665 44455544 5777777777


Q ss_pred             CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358          255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  298 (568)
Q Consensus       255 ~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  298 (568)
                      +.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            77777777777777 67777778888888888888888877765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=6.7e-23  Score=173.03  Aligned_cols=107  Identities=28%  Similarity=0.357  Sum_probs=98.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc
Q 008358          210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  289 (568)
Q Consensus       210 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~  289 (568)
                      .|||++|++.|+.++++.|+++|+++ +..|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCc
Confidence            47999999999999999999999887 77889999999999999999999999999999 88899999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358          290 TEIVTELLSLPDTNVNALTRDHKTALDIAE  319 (568)
Q Consensus       290 ~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~  319 (568)
                      .+++++|++ .|+|++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            999999998 79999999999999999884

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-22  Score=171.22  Aligned_cols=120  Identities=23%  Similarity=0.259  Sum_probs=107.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCC-hHHHHHHHc
Q 008358          141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK-NALHFAARQ  219 (568)
Q Consensus       141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~  219 (568)
                      +.++||+|+..|+.++|++|+++|+++ +..|..|.||||.|+ .|+.+++++|+++ +.+++..+..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccc-cccccccccccccccccccccc
Confidence            468999999999999999999999998 678899999999765 7999999999988 556777777765 699999999


Q ss_pred             CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH
Q 008358          220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  264 (568)
Q Consensus       220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  264 (568)
                      |+.+++++|+++|+++ +..|.+|+||||+|++.|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999887 7889999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=6.6e-23  Score=173.08  Aligned_cols=105  Identities=29%  Similarity=0.368  Sum_probs=64.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCH
Q 008358          177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  256 (568)
Q Consensus       177 tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  256 (568)
                      |||++|++.|+.+++++|+++ +.+++..|.+|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHh-hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            455555555555555555554 3445555555566666666666666666666666555 45566666666666666666


Q ss_pred             HHHHHHHHcCCccccCCCCCCChHHHHH
Q 008358          257 EVVKLLLEADAAIVMLPDKFGNTALHVA  284 (568)
Q Consensus       257 ~~v~~Ll~~g~~~~~~~d~~G~TpLh~A  284 (568)
                      +++++|+++|++ ++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Gad-~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD-KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC-SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc-ceeeCCCCCCHHHHH
Confidence            666666666666 566666666666665

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.8e-23  Score=210.98  Aligned_cols=230  Identities=17%  Similarity=0.134  Sum_probs=166.3

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHH---HHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC--cC
Q 008358          134 LTRKNRSGFDPLHIAAVQGHHAIVQV---LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR--SN  208 (568)
Q Consensus       134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d--~~  208 (568)
                      ++.++..|.||||+||.+|+.+++++   |++.|+++ +..|..|+||||+||..||.++|++|+++ +.+++..+  .+
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~  160 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAE  160 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccC
Confidence            45668889999999999999887765   78899988 67888999999999999999999999998 44555544  46


Q ss_pred             CChHHHHHHHcCCHHHHHHHHcCCCccc--cccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccc------cCCCCCCChH
Q 008358          209 GKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV------MLPDKFGNTA  280 (568)
Q Consensus       209 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~------~~~d~~G~Tp  280 (568)
                      |.||||+|+..||.+++++|++.++...  +..+.+|.||+|.|+.+|+.+++++|++.|++..      ...+..+.++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            9999999999999999999999987652  3345567788899999999999999999987621      1123345577


Q ss_pred             HHHHHHcCcHHHHHHHhcC-CCCCcccccCC-------CCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc-----cCC
Q 008358          281 LHVATRKKRTEIVTELLSL-PDTNVNALTRD-------HKTALDIAEGLPSSEEASEIKDCLARCGAVRANE-----LNQ  347 (568)
Q Consensus       281 Lh~A~~~g~~~iv~~Ll~~-~g~~~~~~d~~-------G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~-----~~~  347 (568)
                      ++.+...+..+....+... .....+..+..       +.++++.+...    ...+++++|++.+......     ...
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~----~~ld~v~~Ll~~~~~~~~~~~~~~~~~  316 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE----VLLDDIRFLLSIPGIKALAPTATIPGD  316 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG----GGHHHHHHHHTSTTTGGGSSCCSSTTC
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcC----ChHHHHHHHHhCcChhhhcccccCCCC
Confidence            7777766666655544431 12222333222       23566666543    3457788888887754322     234


Q ss_pred             ChhHHHHHHHhhhhhhhhhHhH
Q 008358          348 PRDELRKTVTQIKKDVHTQLEQ  369 (568)
Q Consensus       348 ~~~~l~~~~~~~~~~~~~~l~~  369 (568)
                      +.++++.+.+..+.++.+.|-.
T Consensus       317 g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         317 ANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             CCHHHHHHHHHTCTTHHHHHTT
T ss_pred             CCcHHHHHHHcCcHHHHHHHhC
Confidence            6788999998888888776653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.1e-21  Score=164.26  Aligned_cols=121  Identities=23%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCH
Q 008358          143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  222 (568)
Q Consensus       143 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  222 (568)
                      ++|+.|+..|+.++|+.|+++|+++ +..|.+|+||||+|+..|+.+++++|++. +.+.+..|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHH
Confidence            4567777777777777777777776 55666777777777777777777777766 445666666677777777777777


Q ss_pred             HHHHHHHcCCCccccccCCCCCCHHHHH--HhCCCHHHHHHHHHc
Q 008358          223 DVVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLEA  265 (568)
Q Consensus       223 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~~  265 (568)
                      +++++|+++|+++....+.+|+||++++  ++.|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            7777777666665323233466665544  345666666666654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=160.39  Aligned_cols=122  Identities=26%  Similarity=0.290  Sum_probs=91.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358          211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  290 (568)
Q Consensus       211 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~  290 (568)
                      ++||.|+..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            5677888888888888888888776 67778888888888888888888888888877 777888888888888888888


Q ss_pred             HHHHHHhcCCCCCcccccC-CCCCHHHHHhhCCCchhhHHHHHHHHHc
Q 008358          291 EIVTELLSLPDTNVNALTR-DHKTALDIAEGLPSSEEASEIKDCLARC  337 (568)
Q Consensus       291 ~iv~~Ll~~~g~~~~~~d~-~G~T~L~~A~~~~~~~~~~~i~~~L~~~  337 (568)
                      +++++|++ .|++++.++. .|+||++++.....  ...+++++|...
T Consensus        81 ~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~--g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEE--GYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSST--TCCCHHHHHHHH
T ss_pred             HHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHc--ChHHHHHHHHhH
Confidence            88888887 6888887764 57788777643321  123556665543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.8e-19  Score=157.53  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccCcCCChHHHH
Q 008358          144 PLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNALHF  215 (568)
Q Consensus       144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  215 (568)
                      .|+.|++.++...+..++..|.++...     .+..|+||||+|+..   |+.+++++|+++ +.+++.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhcccccc
Confidence            456777888888888888877765321     134455555555542   345555555555 33445555555555555


Q ss_pred             HHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358          216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  268 (568)
Q Consensus       216 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  268 (568)
                      |+..|+.+++++|+++|+++ +..|.+|+||||+|++.|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            55555555555555555554 44455555555555555555555555554443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.3e-19  Score=155.79  Aligned_cols=132  Identities=19%  Similarity=0.158  Sum_probs=109.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc---C
Q 008358           76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ---G  152 (568)
Q Consensus        76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~---g  152 (568)
                      ..|+.|++.+++..+..++..+....                            ........+..|+||||+|++.   |
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~----------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~   59 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLT----------------------------EKIPLANGHEPDETALHLAVRSVDRT   59 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT----------------------------SBCCCSSCSSTTCBHHHHHHHHCCTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcC----------------------------CCCCcccCCCCCCchHHHHHHhcCCC
Confidence            35778999999999998885322110                            1112334467899999999975   6


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358          153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD  232 (568)
Q Consensus       153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  232 (568)
                      +.++|++|+++|+++ +..|..|+||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|++.|+.+++++|++.+
T Consensus        60 ~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          60 SLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             THHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCh-hhhhhhhcccccccccccccccccccccc-CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            789999999999998 77899999999999999999999999998 6778999999999999999999999999999976


Q ss_pred             Ccccc
Q 008358          233 PQLAR  237 (568)
Q Consensus       233 ~~~~~  237 (568)
                      ....+
T Consensus       138 ~~~~~  142 (154)
T d1dcqa1         138 SGRFN  142 (154)
T ss_dssp             TTCCC
T ss_pred             CCCCC
Confidence            55433