Citrus Sinensis ID: 008381

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
Protein Sequence
MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHcccccccccccHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHcccHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHcccccccccHccHHHHHHHHHHHHHHHHccccHHHcHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccEEEEcccccccHHHcccccccHHHHHHHHHHHHHHHccccccEcEccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHccccccccccccHHHccccHHccccccccccHcccccccccccccccHHHccccccccccccHHHHHHHHccHHccccccccccHHHcccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHccEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtsgkkyykekiarrkdekpeepeqpkyrdrakerredqnpdyeptelgsfhavappgnvdlRLADAQKLSIEkskylggdvehthlvkGLDYALLNKVRSeidkkpdagddtdgksrtskedQQLSFRTAMAKSVYQWIVKPQTvmktnemflpgrmsfifnteggysndipttlhrskadcpvpdemvtvSVDGSVLDRIAKIMTYLRlgssgkvlkkkkkerdvkgktstvvneydeedkpskansgipngktekeilpppppppkknhvdsrekqgpivarseeddifvgagtdytvpgkdmnqspvsedmeesprnkekvSYFSesvygpvppaepplawqdtngyDAMQAQALAGGYQGEWQDYQYAEQlaypeqylqpdmqtyemqaglnmpqdprfmtqeekdrglgsvfkrDDQRLLQLREKdarekdpnfisesysecypgyqeynreivdsddeddlskmdmggrakgrlhrwdfeTEEEWATYNEQKEAMPKAAFQFGvkmqdgrktrkqnkdqKLTNELHKINKILARKKmekdtngegghydddvqpgkkprv
Flexible Loop (DISEMBL)
mtsgkkyykekiarrkdekpeepeqpkyrdrakerredqnpdyeptelgsfhavAPPGNVDLRLADAQKLSIEKSkylggdvehthlvKGLDYALLNKVRSeidkkpdagddtdgksrtskedqqlsfRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMtylrlgssgkvlkkkkkerdvkgktstvvneydeedkpskansgipngktekeilpppppppkknhvdsREKQGPivarseeddifvgagtdytvpgkdmnqspvsedmeesprnKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEkdrglgsvfkrddqRLLQLrekdarekdpnfisesysecypgYQEYNREIVDSDDEDDLSKMDmggrakgrlhrwdfeTEEEWATYNEQKEAMPKAAFQFGVKmqdgrktrkqnkdqkltneLHKINKILarkkmekdtngegghydddvqpgkkprv
Low Complexity Region (SEG)
MTSGKKYYKEKIARRkdekpeepeqpkYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYlrlgssgkvlkkkkkerdvkgkTSTVVNEYDEEDKPSKANSGIPNGKTEKEILpppppppKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVdsddeddlskmdmGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Disordered region (IsUnstruct)
***********************************************************VDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKV******************************TAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRL***********************************************************************************************************************************LAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQ**************************************************************ECYPGYQEY**************************HRWDFETEEEWAT*************************************************************************
Disordered Region (DISOPRED)
**********************************RR***********LGSFHAVA******************************HLVKGLDYALLN**********************************MAKSVYQWI****************RMSFIFNTEGGYSNDIPTTLHR***************VDGSVLDRIAKIMT***********************************************************************************IFVGAGTDY**********************************************************ALAGGYQGEWQ************************************************************************ISESYSECYPGYQE*****************************WDFETEEEWATY************************************************************************
Disordered Region (DISEMBL)
MTSGKKYYKEKI*******************************EPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKK*******************LSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGK****************TVVNE***********SGIPNGKTEKEILPPP***************GPIVARSEEDDIFVGAGTDYTVPGKDMN******************SYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKM************QKLTNELHKINKILARKKMEKDTNGEGGHYDDD*********
Disordered Region (DISPRO)
*****KYYKEKIARRKDEKPE******YRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPD*GDDTDG******E*QQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKK***********************************************************************F*GAGTDYTVP***********************SYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQE**D**L*SV***DDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDM**RAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKK************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILARKKMEKDTNGEGGHYDDDVQPGKKPRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	567	2.2.26 [Sep-21-2011]
Q66HG8	557	Protein Red OS=Rattus nor	yes	no	0.365	0.371	0.415	4e-38
Q9Z1M8	557	Protein Red OS=Mus muscul	yes	no	0.365	0.371	0.415	4e-38
Q13123	557	Protein Red OS=Homo sapie	yes	no	0.365	0.371	0.415	5e-38
Q5NVI3	557	Protein Red OS=Pongo abel	yes	no	0.365	0.371	0.415	6e-38

>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.
Rattus norvegicus (taxid: 10116)

>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=2

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.

Mus musculus (taxid: 10090)

>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3

 Score =  159 bits (403), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 144/219 (65%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.

Homo sapiens (taxid: 9606)

>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1

 Score =  159 bits (402), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 144/219 (65%), Gaps = 12/219 (5%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
           KK Y  K+ +++ E+  E  + KYRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct: 77  KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
           D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
           +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
           TL RSKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293

May bind to chromatin.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
225444599	566	PREDICTED: protein Red isoform 1 [Vitis	0.996	0.998	0.836	0.0
225444601	567	PREDICTED: protein Red isoform 2 [Vitis	0.996	0.996	0.827	0.0
255550309	567	red protein, putative [Ricinus communis]	1.0	1.0	0.851	0.0
224142762	567	predicted protein [Populus trichocarpa]	0.996	0.996	0.816	0.0
356530469	567	PREDICTED: protein Red [Glycine max]	0.994	0.994	0.821	0.0
356556428	565	PREDICTED: protein Red-like [Glycine max	0.991	0.994	0.813	0.0
449437520	561	PREDICTED: protein Red-like [Cucumis sat	0.989	1.0	0.800	0.0
359484499	536	PREDICTED: protein Red isoform 3 [Vitis	0.943	0.998	0.792	0.0
242082564	564	hypothetical protein SORBIDRAFT_08g00103	0.991	0.996	0.746	0.0
357157713	572	PREDICTED: protein Red-like [Brachypodiu	0.991	0.982	0.718	0.0

>gi|225444599|ref|XP_002274576.1| PREDICTED: protein Red isoform 1 [Vitis vinifera] gi|297738505|emb|CBI27750.3| unnamed protein product [Vitis vinifera]

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/568 (83%), Positives = 516/568 (90%), Gaps = 3/568 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M S K+ +KEKI RRK+EKPEEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MASSKRNHKEKIIRRKEEKPEEPELPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           DLR  DA K+SIE SKYLGGDVEHTHLVKGLDYALL+KVRSEI+KKP+ GDD DGKSR S
Sbjct: 61  DLRSTDANKISIEHSKYLGGDVEHTHLVKGLDYALLHKVRSEIEKKPEVGDDADGKSRVS 120

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
            EDQ LSFRTA AKSVYQWIVKPQTV+K+NEMFLPGRM+FIF+ EGG+S+DIPTTLHRSK
Sbjct: 121 NEDQPLSFRTATAKSVYQWIVKPQTVVKSNEMFLPGRMAFIFSMEGGFSSDIPTTLHRSK 180

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDE 240
           ADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVKGK STV NE+DE
Sbjct: 181 ADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVKGKISTVGNEFDE 240

Query: 241 EDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT 300
           E KPSK + G+   +TE+E L PPP PP+KN+VDSREK GP VARSE+DDIFVG G +Y 
Sbjct: 241 EKKPSKLDGGMSKNQTERESL-PPPLPPRKNYVDSREKHGPSVARSEQDDIFVGDGVEYD 299

Query: 301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALA 360
           +P KDM+QSPVSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQALA
Sbjct: 300 IPSKDMSQSPVSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQALA 358

Query: 361 GGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKR 420
            GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVFKR
Sbjct: 359 AGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVFKR 418

Query: 421 DDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGR 480
           DDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKGR
Sbjct: 419 DDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGR 478

Query: 481 LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 540
           LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA
Sbjct: 479 LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 538

Query: 541 RKKMEK-DTNGEGGHYDDDVQPGKKPRV 567
           RKKMEK + N +GG YDDD QPGKK R+
Sbjct: 539 RKKMEKGEMNDDGGRYDDDSQPGKKLRI 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444601|ref|XP_002274600.1| PREDICTED: protein Red isoform 2 [Vitis vinifera]

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/569 (82%), Positives = 515/569 (90%), Gaps = 4/569 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M S K+ +KEKI RRK+EKPEEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MASSKRNHKEKIIRRKEEKPEEPELPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDG-KSRT 119
           DLR  DA K+SIE SKYLGGDVEHTHLVKGLDYALL+KVRSEI+KKP+ GDD DG K+  
Sbjct: 61  DLRSTDANKISIEHSKYLGGDVEHTHLVKGLDYALLHKVRSEIEKKPEVGDDADGNKTSN 120

Query: 120 SKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRS 179
            ++DQ LSFRTA AKSVYQWIVKPQTV+K+NEMFLPGRM+FIF+ EGG+S+DIPTTLHRS
Sbjct: 121 PRKDQPLSFRTATAKSVYQWIVKPQTVVKSNEMFLPGRMAFIFSMEGGFSSDIPTTLHRS 180

Query: 180 KADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYD 239
           KADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVKGK STV NE+D
Sbjct: 181 KADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVKGKISTVGNEFD 240

Query: 240 EEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDY 299
           EE KPSK + G+   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G +Y
Sbjct: 241 EEKKPSKLDGGMSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGVEY 299

Query: 300 TVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQAL 359
            +P KDM+QSPVSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQAL
Sbjct: 300 DIPSKDMSQSPVSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQAL 358

Query: 360 AGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFK 419
           A GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVFK
Sbjct: 359 AAGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVFK 418

Query: 420 RDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 479
           RDDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKG
Sbjct: 419 RDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKG 478

Query: 480 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL 539
           RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL
Sbjct: 479 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL 538

Query: 540 ARKKMEK-DTNGEGGHYDDDVQPGKKPRV 567
           ARKKMEK + N +GG YDDD QPGKK R+
Sbjct: 539 ARKKMEKGEMNDDGGRYDDDSQPGKKLRI 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550309|ref|XP_002516205.1| red protein, putative [Ricinus communis] gi|223544691|gb|EEF46207.1| red protein, putative [Ricinus communis]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/567 (85%), Positives = 510/567 (89%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           MTS K+ YKEKIARRK+EK EEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MTSLKRNYKEKIARRKEEKAEEPETPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGAV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           D R ADA K+SIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDD DGKSR S
Sbjct: 61  DTRSADAHKISIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDADGKSRKS 120

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
           KEDQQLSFRTA AKSVYQ IVKPQ +MKTNEMFLPGRMSFIFN EGGY++DIPTTLHRSK
Sbjct: 121 KEDQQLSFRTATAKSVYQSIVKPQAIMKTNEMFLPGRMSFIFNMEGGYTHDIPTTLHRSK 180

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDE 240
           ADCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKE+D KGK S + +E++E
Sbjct: 181 ADCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKEKDAKGKISVIGHEHNE 240

Query: 241 EDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT 300
           EDK SK N GI N KTE+EILPPPPPPPKK+  DS EKQGPIVAR EE+DIFVG G DY 
Sbjct: 241 EDKHSKPNGGISNNKTEREILPPPPPPPKKSQPDSHEKQGPIVARGEENDIFVGDGVDYD 300

Query: 301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALA 360
           VPGKDM+QSPVSEDMEESPRNKE+VSYFSE VYGPVPP+ P   WQD NGYDA+QAQALA
Sbjct: 301 VPGKDMSQSPVSEDMEESPRNKERVSYFSEPVYGPVPPSGPSQEWQDLNGYDAIQAQALA 360

Query: 361 GGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKR 420
            GYQGEWQDYQY EQLAY EQYLQ  MQ Y+MQA  N+ QDPRFMTQEEKDRGLGSVFKR
Sbjct: 361 SGYQGEWQDYQYTEQLAYSEQYLQQTMQAYDMQAASNVLQDPRFMTQEEKDRGLGSVFKR 420

Query: 421 DDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGR 480
           DDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKGR
Sbjct: 421 DDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGR 480

Query: 481 LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 540
           LHRWDFETEEEWA YNEQKEAMPKAA+QFGVKMQDGRKTRKQNKDQKL NELHKINKILA
Sbjct: 481 LHRWDFETEEEWAKYNEQKEAMPKAAYQFGVKMQDGRKTRKQNKDQKLNNELHKINKILA 540

Query: 541 RKKMEKDTNGEGGHYDDDVQPGKKPRV 567
           RKKMEKD+       DDDVQ  KKPR+
Sbjct: 541 RKKMEKDSGDGDHFDDDDVQHAKKPRI 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142762|ref|XP_002324721.1| predicted protein [Populus trichocarpa] gi|222866155|gb|EEF03286.1| predicted protein [Populus trichocarpa]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/567 (81%), Positives = 508/567 (89%), Gaps = 2/567 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           MTS KK+YKEKIARRK+EKPEE E PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MTSSKKHYKEKIARRKEEKPEESETPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLR-LADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRT 119
           D+R +AD+ ++SIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPD+ +D DGKSR 
Sbjct: 61  DIRSVADSNQISIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDSAEDVDGKSRA 120

Query: 120 SKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRS 179
           SKEDQ++ FRTA AKSVYQWIVKPQT++KTNEMFLPGRMSFIFN EGGYS+DIPTTLHRS
Sbjct: 121 SKEDQKILFRTATAKSVYQWIVKPQTIIKTNEMFLPGRMSFIFNMEGGYSHDIPTTLHRS 180

Query: 180 KADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYD 239
           KADCPVP+EMVTVSVDGSVLDRIAKIM+YLRLGSSGKVLKKKKK++D KGK S V NEYD
Sbjct: 181 KADCPVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKDKDAKGKISVVGNEYD 240

Query: 240 EEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDY 299
           E DKPSK + G+ N KTE+EILPPPPPPPK N  DS EKQ P VAR +E+DIFVG G DY
Sbjct: 241 EHDKPSKPSGGMLNNKTEREILPPPPPPPKNNLADSFEKQQPAVAREDENDIFVGHGIDY 300

Query: 300 TVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQAL 359
            VPGKDM+QSP+SEDMEESPRNKE++SYFSE VYGPVPP+E    WQD NGYDA+ AQAL
Sbjct: 301 EVPGKDMSQSPLSEDMEESPRNKERLSYFSEPVYGPVPPSELSHEWQDPNGYDAVHAQAL 360

Query: 360 AGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFK 419
           +  YQGEWQ+YQYAEQ AYPEQY Q  MQ Y+MQA  ++  DPRFMTQEEKDRGLGSVFK
Sbjct: 361 SADYQGEWQNYQYAEQFAYPEQYTQQTMQAYDMQAASSIQPDPRFMTQEEKDRGLGSVFK 420

Query: 420 RDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 479
           RDDQRL QLREKDAREKDPNFIS+SYSECYP YQ + RE+VDSDDEDDLSKMDMGGRAKG
Sbjct: 421 RDDQRLQQLREKDAREKDPNFISDSYSECYPAYQHFTREVVDSDDEDDLSKMDMGGRAKG 480

Query: 480 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL 539
           RLHRWDF+TE+EWA YNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL NELH+INKIL
Sbjct: 481 RLHRWDFDTEDEWAKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHQINKIL 540

Query: 540 ARKKMEKDTNGEGGHYDDDVQPGKKPR 566
           A+KK++K+ NG+GGHYDDD  PGKK R
Sbjct: 541 AKKKIDKE-NGDGGHYDDDTPPGKKQR 566

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530469|ref|XP_003533803.1| PREDICTED: protein Red [Glycine max]

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/567 (82%), Positives = 505/567 (89%), Gaps = 3/567 (0%)

Query: 2   TSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVD 61
            S KK  KEK  RRK+EKPEEPE PKYRDRAKERREDQNPDYE TELG FHAVAPPG VD
Sbjct: 3   ASNKKNPKEKPIRRKEEKPEEPEVPKYRDRAKERREDQNPDYEQTELG-FHAVAPPGTVD 61

Query: 62  LRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSK 121
           +R +DA KLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKP+AGDD +GKSR++ 
Sbjct: 62  IRSSDAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPEAGDDVEGKSRSAM 121

Query: 122 EDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKA 181
           EDQQ+S RTA AKSVYQWIVKPQT+ KTNEMFLPGRM+FI+N EGGY +DIPTTLHRSKA
Sbjct: 122 EDQQVSIRTATAKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKA 181

Query: 182 DCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEE 241
           DCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGK+LKKK+KE+D KGK   V N +D+E
Sbjct: 182 DCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKILKKKRKEKDAKGKILAVGNGFDKE 241

Query: 242 DKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTV 301
           DKPSK   G  N +TEKEI+ PPPPP KKN + S EKQGP VAR+E+DDIFVG G DY +
Sbjct: 242 DKPSKVEGGAKN-QTEKEIILPPPPPIKKNPLHSIEKQGPAVARAEDDDIFVGEGVDYDI 300

Query: 302 PGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAG 361
           PGKD++QSPVSEDMEESPRNKEK SYF+E  YGPV P+  P  WQ+TNGYD MQ QALA 
Sbjct: 301 PGKDLSQSPVSEDMEESPRNKEKPSYFTEPTYGPVQPSMVPQGWQETNGYDVMQTQALAA 360

Query: 362 GYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRD 421
           GYQGEWQ+YQYAEQLAYP+QYLQ +MQ Y+ QA LN+P DPRFMTQEEKDRGLGSVFKRD
Sbjct: 361 GYQGEWQEYQYAEQLAYPDQYLQQNMQAYDEQADLNLPLDPRFMTQEEKDRGLGSVFKRD 420

Query: 422 DQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL 481
           DQRL QLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL
Sbjct: 421 DQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL 480

Query: 482 HRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILAR 541
           HRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKINKILAR
Sbjct: 481 HRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKILAR 540

Query: 542 KKMEKDTNGEGG-HYDDDVQPGKKPRV 567
           KKMEKDTNGEGG HYDD+  PGKK R+
Sbjct: 541 KKMEKDTNGEGGNHYDDEPTPGKKLRI 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556428|ref|XP_003546528.1| PREDICTED: protein Red-like [Glycine max]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/567 (81%), Positives = 501/567 (88%), Gaps = 5/567 (0%)

Query: 2   TSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVD 61
            S KK +KEK  RRK+EKPEEPE PKYRDRAKERREDQNPDYE TELG FHAVAPPG VD
Sbjct: 3   ASNKKNHKEKPIRRKEEKPEEPEVPKYRDRAKERREDQNPDYEQTELG-FHAVAPPGTVD 61

Query: 62  LRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSK 121
           +R +DA KLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKP+ GDD +GKSR++K
Sbjct: 62  IRSSDAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPETGDDVEGKSRSAK 121

Query: 122 EDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKA 181
           EDQQ+S RTA AKSVYQWIVKPQT+ KTNEMFLPGRM+FI+N EGGY +DIPTTLHRSKA
Sbjct: 122 EDQQVSIRTATAKSVYQWIVKPQTISKTNEMFLPGRMTFIYNMEGGYHHDIPTTLHRSKA 181

Query: 182 DCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEE 241
           DCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGK+LKKKKKE+D KGK   V N +D+E
Sbjct: 182 DCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKILKKKKKEKDAKGKILAVGNGFDKE 241

Query: 242 DKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYTV 301
           DKPSK   G    K + E    PPPP KKN + SREKQGP VAR+E+DDIFVG G  Y V
Sbjct: 242 DKPSKVEGG---AKNQTEKEIIPPPPIKKNPLHSREKQGPAVARAEDDDIFVGEGVHYDV 298

Query: 302 PGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAG 361
           PGKD++QSPVSEDMEESPRNKEK SY +E  YGPVPP+  P  WQ+TNGYD MQ QA   
Sbjct: 299 PGKDLSQSPVSEDMEESPRNKEKPSYVTEPTYGPVPPSMVPQGWQETNGYDVMQTQAFDA 358

Query: 362 GYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRD 421
           GYQGEWQ+YQYAEQLAYP+QYLQ +MQ Y++QAGLN+PQDPRFM+QEEKDRGLGSVFKRD
Sbjct: 359 GYQGEWQEYQYAEQLAYPDQYLQQNMQPYDVQAGLNLPQDPRFMSQEEKDRGLGSVFKRD 418

Query: 422 DQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL 481
           DQRL QLRE+DAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL
Sbjct: 419 DQRLQQLRERDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL 478

Query: 482 HRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILAR 541
           HRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKINKILAR
Sbjct: 479 HRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKILAR 538

Query: 542 KKMEKDTNGEGG-HYDDDVQPGKKPRV 567
           KKMEKDTNGEGG HYDD+  PGKK R+
Sbjct: 539 KKMEKDTNGEGGHHYDDEPTPGKKLRI 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437520|ref|XP_004136540.1| PREDICTED: protein Red-like [Cucumis sativus] gi|449514795|ref|XP_004164482.1| PREDICTED: protein Red-like [Cucumis sativus]

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/567 (80%), Positives = 500/567 (88%), Gaps = 6/567 (1%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M+S KK+YK+K AR K+EK EEPE PKYRDRAKERREDQNPDYEPTELG FHAVAPPG V
Sbjct: 1   MSSAKKHYKDKFARHKEEKTEEPETPKYRDRAKERREDQNPDYEPTELG-FHAVAPPGTV 59

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           D+R ADA KLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDA  D +GK+   
Sbjct: 60  DIRAADAHKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAVGDAEGKASAP 119

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
           KEDQQ+ FRTA AKSVY+WIVKPQT +K+NE FLPGR SFI+N EGGYS+DIPTTLHRSK
Sbjct: 120 KEDQQVLFRTATAKSVYKWIVKPQTGIKSNETFLPGRTSFIYNMEGGYSHDIPTTLHRSK 179

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDE 240
           ADCPVP+EMVTV+VDGSVLDRIAKIM+YLRLGSSGKVLKKKKK++DVKGK S++VNEY  
Sbjct: 180 ADCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKDKDVKGKISSIVNEYVG 239

Query: 241 EDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT 300
            +KPS  ++G+P  + E+E + PPPPP KKN +  +EKQGP+V R E+DDIFVGAG DYT
Sbjct: 240 INKPSTLDTGVPKKQMERE-MLPPPPPLKKNQIVLKEKQGPVVTRVEDDDIFVGAGVDYT 298

Query: 301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALA 360
           VPGKD++QSP+SEDMEESPRNKEK SYFSE  YGPVPP+ PP  WQ+TNGY  MQ QA  
Sbjct: 299 VPGKDLSQSPLSEDMEESPRNKEKPSYFSEPAYGPVPPSGPPQEWQETNGYGVMQPQAFP 358

Query: 361 GGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKR 420
            GYQGEWQDYQY+EQLAY EQYLQ +MQ Y+MQ G N+ QDPR MTQEEKDRGLGSVFKR
Sbjct: 359 AGYQGEWQDYQYSEQLAYSEQYLQLNMQAYDMQTGANIQQDPRLMTQEEKDRGLGSVFKR 418

Query: 421 DDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGR 480
           DDQRL QLRE+DAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGR
Sbjct: 419 DDQRLQQLRERDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGR 478

Query: 481 LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 540
           LHRWDFETEEEWA YNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL NELHKINKILA
Sbjct: 479 LHRWDFETEEEWAKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNELHKINKILA 538

Query: 541 RKKMEKDTNGEGGHYDDDVQPGKKPRV 567
           +KKMEK+ NG+    D+D+QPGKK RV
Sbjct: 539 KKKMEKEMNGD----DEDIQPGKKIRV 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484499|ref|XP_002274638.2| PREDICTED: protein Red isoform 3 [Vitis vinifera]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/568 (79%), Positives = 487/568 (85%), Gaps = 33/568 (5%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M S K+ +KEKI RRK+EKPEEPE PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG V
Sbjct: 1   MASSKRNHKEKIIRRKEEKPEEPELPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGTV 60

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           DLR  DA K+SIE SKYLGGDVEHTHLVKGLDYALL+KVRSEI+KKP+ GDD DGKSR S
Sbjct: 61  DLRSTDANKISIEHSKYLGGDVEHTHLVKGLDYALLHKVRSEIEKKPEVGDDADGKSRVS 120

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
            EDQ LSFRTA AK                              EGG+S+DIPTTLHRSK
Sbjct: 121 NEDQPLSFRTATAK------------------------------EGGFSSDIPTTLHRSK 150

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDE 240
           ADCPVP+EMVTV VDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERDVKGK STV NE+DE
Sbjct: 151 ADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDVKGKISTVGNEFDE 210

Query: 241 EDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT 300
           E KPSK + G+   +TE+E LPPP PP +KN+VDSREK GP VARSE+DDIFVG G +Y 
Sbjct: 211 EKKPSKLDGGMSKNQTERESLPPPLPP-RKNYVDSREKHGPSVARSEQDDIFVGDGVEYD 269

Query: 301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALA 360
           +P KDM+QSPVSEDMEESPRNKE++SY SE  YGPVPP+EP   WQ TNGYDAMQAQALA
Sbjct: 270 IPSKDMSQSPVSEDMEESPRNKERISYLSEPAYGPVPPSEPQ-EWQQTNGYDAMQAQALA 328

Query: 361 GGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKR 420
            GYQG+WQ+YQYAEQ+AYPEQYLQ +MQTY++QAG+ +PQDPRFMTQEEKDRGLGSVFKR
Sbjct: 329 AGYQGDWQEYQYAEQMAYPEQYLQQNMQTYDVQAGMGIPQDPRFMTQEEKDRGLGSVFKR 388

Query: 421 DDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGR 480
           DDQRL QLREKDAREKDPNFISESYSECYPGYQEYNRE+VDSDDEDDLSKMDMGGRAKGR
Sbjct: 389 DDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGR 448

Query: 481 LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 540
           LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA
Sbjct: 449 LHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILA 508

Query: 541 RKKMEK-DTNGEGGHYDDDVQPGKKPRV 567
           RKKMEK + N +GG YDDD QPGKK R+
Sbjct: 509 RKKMEKGEMNDDGGRYDDDSQPGKKLRI 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082564|ref|XP_002441707.1| hypothetical protein SORBIDRAFT_08g001030 [Sorghum bicolor] gi|241942400|gb|EES15545.1| hypothetical protein SORBIDRAFT_08g001030 [Sorghum bicolor]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/567 (74%), Positives = 481/567 (84%), Gaps = 5/567 (0%)

Query: 1   MTSGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
           M+S K YYKEK+ RRK+EK EEPE P+YRDRAKERREDQNPDYEPTELGSFHAVAPPG  
Sbjct: 1   MSSKKNYYKEKMMRRKEEKKEEPETPRYRDRAKERREDQNPDYEPTELGSFHAVAPPG-T 59

Query: 61  DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
           DLRLADA K+SIEKSKYLGGD+EHTHLVKGLDYALL+KVRSEI+KKPDA D  D KSR +
Sbjct: 60  DLRLADAHKISIEKSKYLGGDLEHTHLVKGLDYALLHKVRSEIEKKPDAEDGKDAKSRAT 119

Query: 121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
           KEDQ +SFRTA  +SVYQWI+KPQ+++K NE+FLPGRMSFI+N E G +NDIPTTLHRSK
Sbjct: 120 KEDQAISFRTATLQSVYQWIIKPQSIIKENELFLPGRMSFIYNMEEGVTNDIPTTLHRSK 179

Query: 181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDE 240
           ADCP+P+EMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERD+KGK++    +YDE
Sbjct: 180 ADCPIPEEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDIKGKSNLASGDYDE 239

Query: 241 EDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT 300
             KPS+ N      K + ++ PPP PPP+ N+ + +EKQ   V+R+++DDIFVG G DY+
Sbjct: 240 SVKPSQINGSTL--KHQSDMPPPPAPPPRNNNFNGKEKQPVPVSRADDDDIFVGDGVDYS 297

Query: 301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALA 360
           VP K+M+QSPVS DM+ESP N +K S F+E +YGPVPP+EP  AWQ  NGYDA+QAQ  A
Sbjct: 298 VPNKEMSQSPVS-DMDESPHNHQKQSNFTEPMYGPVPPSEPAQAWQQQNGYDAVQAQMAA 356

Query: 361 GGYQGEWQDYQYAEQ-LAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFK 419
            GYQG+W  Y YAEQ L YPEQY+Q   Q Y++ A  ++ QDPRFMTQ +KDRGLGSVFK
Sbjct: 357 AGYQGDWSSYVYAEQQLGYPEQYVQQSTQEYDVLADPSLSQDPRFMTQADKDRGLGSVFK 416

Query: 420 RDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKG 479
           RDDQRL QLREKDARE+DPNFIS+SYSECYPGYQEYN EI  SDDEDDLSKMDMGGRAKG
Sbjct: 417 RDDQRLNQLREKDARERDPNFISDSYSECYPGYQEYNNEIAGSDDEDDLSKMDMGGRAKG 476

Query: 480 RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKIL 539
           RLHRWDFETEEEWA YN+QKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTN+LHKINKIL
Sbjct: 477 RLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKINKIL 536

Query: 540 ARKKMEKDTNGEGGHYDDDVQPGKKPR 566
           ARKK EKD   +GGHYDDD+   KK R
Sbjct: 537 ARKKGEKDGAEDGGHYDDDLPSSKKQR 563

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157713|ref|XP_003577889.1| PREDICTED: protein Red-like [Brachypodium distachyon]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/571 (71%), Positives = 470/571 (82%), Gaps = 9/571 (1%)

Query: 2   TSGKKYYKEKIARRKDEKPEEPEQ-PKYRDRAKERREDQNPDYEPTELGSFHAVAPPG-- 58
           T  K  YKEK+ARRK+E  +E  + P+YRDRAKERREDQNPDYEPTELGSFHAVAPPG  
Sbjct: 6   TKKKSNYKEKMARRKEENKKEEPETPRYRDRAKERREDQNPDYEPTELGSFHAVAPPGAP 65

Query: 59  NVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSR 118
             DLRLADAQK+SIEKSKYLGGD+EHTHLVKGLD+ALLNKVRSEIDKKPDA D  D K+R
Sbjct: 66  GADLRLADAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKAR 125

Query: 119 TSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGY-SNDIPTTLH 177
            +KED+ +SFRTA+AKSVYQ IVK Q+  K NEMFLPGRM+FI+N E G  +NDIPTTLH
Sbjct: 126 ETKEDRAISFRTAIAKSVYQSIVKSQSTPKANEMFLPGRMAFIYNMEDGLITNDIPTTLH 185

Query: 178 RSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNE 237
           RSKADCPVP+EMVTVSVDGSVLDRIAKIM+YLRLGSSGKVLKKKKKERD KGK +   ++
Sbjct: 186 RSKADCPVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDAKGKNNLAGSD 245

Query: 238 YDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGT 297
           Y+E  +P + N   P    +KE+LPPPPP  +K++   +EKQ   +AR+++DDIFVG G 
Sbjct: 246 YNEGVRPPQTNGSAPKHHLDKEMLPPPPP--RKSNFKEKEKQPAPIARADDDDIFVGDGV 303

Query: 298 DYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQ 357
           DYT+P K+++ SP+SEDM+ESP N +  S+ +E VYGP+ P+EP  AWQ   GYDA+QAQ
Sbjct: 304 DYTIPNKELSHSPISEDMDESPHNHQNQSHLTEPVYGPIQPSEPAQAWQQVGGYDAIQAQ 363

Query: 358 ALAGGYQGEWQDYQYAEQ-LAYPEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGS 416
             A GYQGEW  YQYAEQ LAYPEQY+Q     Y++ A  ++PQDPR MTQ +KD+GLGS
Sbjct: 364 MAAAGYQGEWPGYQYAEQQLAYPEQYMQQGALGYDVLADPDIPQDPRLMTQADKDKGLGS 423

Query: 417 VFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGR 476
           VFKRDD RL QLREKDAREKDPNFIS+SYSECYPGYQ YN+EI  SDDEDDLSKMDMGGR
Sbjct: 424 VFKRDDDRLKQLREKDAREKDPNFISDSYSECYPGYQGYNQEIAGSDDEDDLSKMDMGGR 483

Query: 477 AKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKIN 536
           AKGRLHRWDFETEEEWA YN+QKEAMPKAAFQFGVKMQDGRKTRKQNKDQKL N+LHKIN
Sbjct: 484 AKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKIN 543

Query: 537 KILARKKMEKDTNGEGGHYDDDVQPGKKPRV 567
           KILARKK +KD  G  GHYDDD+   KK R 
Sbjct: 544 KILARKKGDKD--GGEGHYDDDLPSVKKQRA 572

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
TAIR|locus:2066221	585	SMU2 "AT2G26460" [Arabidopsis	0.927	0.899	0.638	3.4e-180
ZFIN|ZDB-GENE-030131-960	548	ik "IK cytokine" [Danio rerio	0.356	0.368	0.411	2.9e-62
UNIPROTKB|F1NDF8	552	IK "Uncharacterized protein" [	0.356	0.365	0.397	6.1e-62
RGD|1359352	557	Ik "IK cytokine, down-regulato	0.356	0.362	0.401	5.4e-59
UNIPROTKB|F1LSE1	557	Ik "Protein Red" [Rattus norve	0.356	0.362	0.401	5.4e-59
UNIPROTKB|F1RGE2	873	LOC100738153 "Uncharacterized	0.356	0.231	0.401	6.5e-59
UNIPROTKB|K7GQD2	553	LOC100738153 "Uncharacterized	0.356	0.365	0.401	6.9e-59
UNIPROTKB|Q13123	557	IK "Protein Red" [Homo sapiens	0.356	0.362	0.401	6.9e-59
UNIPROTKB|A4FUY8	555	IK "Uncharacterized protein" [	0.356	0.363	0.401	6.9e-59
MGI|MGI:1345142	557	Ik "IK cytokine" [Mus musculus	0.356	0.362	0.401	1.1e-58

TAIR|locus:2066221 SMU2 "AT2G26460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
 Identities = 346/542 (63%), Positives = 400/542 (73%)

Query:     1 MTSGKKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTELGSFHAVAPPGNV 60
             M   K ++KEK ARR            YRDRAKERRE+QNPDY+P+EL SFHAVAPPG V
Sbjct:     1 MKPSKSHHKEKTARRREEKLEESDNPKYRDRAKERRENQNPDYDPSELSSFHAVAPPGAV 60

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTS 120
             D+R ADA K+SIE SKYLGGDVEHTHLVKGLDYALLNKVRSEI KKPD  D   GK+   
Sbjct:    61 DIRAADALKISIENSKYLGGDVEHTHLVKGLDYALLNKVRSEIVKKPDGEDGDGGKTSAP 120

Query:   121 KEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSK 180
             KEDQ+++FRT  AKSVYQWIVKPQT++K+NEMFLPGRM+F+++ EGGY++DIPTTL+RSK
Sbjct:   121 KEDQRVTFRTIAAKSVYQWIVKPQTIIKSNEMFLPGRMTFVYDMEGGYTHDIPTTLYRSK 180

Query:   181 ADCPVPDEMVTVSVDGSVLDRIAKIMTYXXXXXXXXXXXXXXXXXXXXXXTSTVVNEYDE 240
             ADCPVP+E VTV+VDGSVLDRIAKIM+Y                       ST+ N+YDE
Sbjct:   181 ADCPVPEEFVTVNVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKEKDGKGKMSTIANDYDE 240

Query:   241 EDKPSKANSGIPNGKTEKEILXXXXXXXKK-NHVD-SREKQGPIVARSEEDDIFVGAGTD 298
             +D  SK  +G     +++E+L          NH+D S +++ P VAR+++DDIFVG G D
Sbjct:   241 DDNKSKIENGSSVNISDREVLPPPPPLPPGINHLDLSTKQEEPPVARTDDDDIFVGEGVD 300

Query:   299 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVP---P--AEP------PLA--- 344
             YTVPGKD+ QSP+SEDMEESPR+KEKVSYF E  YGPV    P  AEP      P A   
Sbjct:   301 YTVPGKDVTQSPISEDMEESPRDKEKVSYFDEPAYGPVQEKVPYFAEPAYGPVQPSAGQE 360

Query:   345 WQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPEQYLQPDMQTYEMQAGLNMPQDPRF 404
             WQD + Y AMQ Q LA GY GEWQ+YQYAEQ  Y EQYLQP M+ YE+Q   ++  DP+ 
Sbjct:   361 WQDMSAYGAMQTQGLAPGYPGEWQEYQYAEQTGYQEQYLQPGMEGYEVQPETDVLLDPQL 420

Query:   405 MTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIVXXXX 464
             M+QEEKDRGLGSVFKRDDQRL QLRE DAREKDP F+SESYSECYPGYQEYN EIV    
Sbjct:   421 MSQEEKDRGLGSVFKRDDQRLQQLRESDAREKDPTFVSESYSECYPGYQEYNHEIVGSDE 480

Query:   465 XXXXXXXXXGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNK 524
                      GG+AKG LHRWDFETEEEW  YNEQKEAMPKAAFQFGVKMQDGRKTRKQN+
Sbjct:   481 EPDLSKMDMGGKAKGGLHRWDFETEEEWEKYNEQKEAMPKAAFQFGVKMQDGRKTRKQNR 540

Query:   525 DQ 526
             D+
Sbjct:   541 DR 542

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008380 "RNA splicing" evidence=IMP

ZFIN|ZDB-GENE-030131-960 ik "IK cytokine" [Danio rerio (taxid:7955)]

 Score = 405 (147.6 bits), Expect = 2.9e-62, Sum P(3) = 2.9e-62
 Identities = 88/214 (41%), Positives = 134/214 (62%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRA+ERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEMERERELAEKYRDRARERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    +D   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEITSKEREEEDMIEKVQKE 195

Query:   120 SKED----QQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
              K+D    Q++ F+T M +++Y+ + K +  ++ NE+FLPGRM+++ + E  Y++ DIPT
Sbjct:   196 VKKDEDPEQKIEFKTRMGRNIYRNVFKGRQ-LERNELFLPGRMAYVVDLEDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

GO:0060047 "heart contraction" evidence=IMP

UNIPROTKB|F1NDF8 IK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 396 (144.5 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
 Identities = 85/214 (39%), Positives = 134/214 (62%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEEMMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + +++Y+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNIYRILFKNKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

RGD|1359352 Ik "IK cytokine, down-regulator of HLA II" [Rattus norvegicus (taxid:10116)]

 Score = 401 (146.2 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 86/214 (40%), Positives = 135/214 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1LSE1 Ik "Protein Red" [Rattus norvegicus (taxid:10116)]

 Score = 401 (146.2 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 86/214 (40%), Positives = 135/214 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RGE2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 6.5e-59, Sum P(2) = 6.5e-59
 Identities = 86/214 (40%), Positives = 134/214 (62%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    18 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 76

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:    77 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 136

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   137 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 195

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   196 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 229

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|K7GQD2 LOC100738153 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 400 (145.9 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 86/214 (40%), Positives = 134/214 (62%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q13123 IK "Protein Red" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 86/214 (40%), Positives = 134/214 (62%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0006955 "immune response" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A4FUY8 IK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 400 (145.9 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 86/214 (40%), Positives = 134/214 (62%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEEMMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1345142 Ik "IK cytokine" [Mus musculus (taxid:10090)]

 Score = 401 (146.2 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 86/214 (40%), Positives = 135/214 (63%)

Query:     5 KKYYKEKIARRXXXXXXXXXXXXYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
             KK Y  K+ R+            YRDRAKERR+  N DYE TEL     ++ AV P    
Sbjct:    77 KKSYYAKL-RQQEIERERELAEKYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135

Query:    61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
             D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + 
Sbjct:   136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195

Query:   120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
             +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPT
Sbjct:   196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254

Query:   175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTY 208
             TL RSKADCP  +   T++ +  V+ ++ +I++Y
Sbjct:   255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016370001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (566 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016018001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (514 aa)					•		•		0.787

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	567
pfam07808	238	pfam07808, RED_N, RED-like protein N-terminal regi	4e-70
pfam07807	118	pfam07807, RED_C, RED-like protein C-terminal regi	7e-49

>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region

 Score =  225 bits (574), Expect = 4e-70
 Identities = 106/239 (44%), Positives = 157/239 (65%), Gaps = 21/239 (8%)

Query: 5   KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRL 64
           KK  K    R+++E  E+   PKYRDRA+ERR+  N DY+P+ L ++ AVAP    D+  
Sbjct: 1   KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKDYDPSSLAAYRAVAPDAKSDIDA 60

Query: 65  ADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKSRTSKE-- 122
           A+ +  +I++SK+LGGDVEHTHLVKGLD+ALLNKVRSE+ KK D  ++   K   SKE  
Sbjct: 61  AENRNNTIDESKFLGGDVEHTHLVKGLDFALLNKVRSELIKKEDEEEEGKDKVNQSKEKY 120

Query: 123 ---------------DQQLSFRTAMAKSVYQWI--VKPQTVMKTNEMFLPGRMSFIFNTE 165
                          + +++F+T + K++++     + Q ++  NE+F PGRM+++F+ +
Sbjct: 121 LPSQAQNLTEKRAESESKITFKTELGKNIFKQFQLQESQKIIN-NELFAPGRMAYVFDLD 179

Query: 166 GGYS-NDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 223
                NDIPTTL RSKADCPV +E VT++ + SVL+++ +I++YLR G+S K  KKKKK
Sbjct: 180 DEIDENDIPTTLIRSKADCPVIEEDVTLTTNNSVLNKLTQILSYLRAGTSNKENKKKKK 238

This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently. Length = 238

>gnl|CDD|203768 pfam07807, RED_C, RED-like protein C-terminal region

 Score =  164 bits (418), Expect = 7e-49
 Identities = 85/125 (68%), Positives = 97/125 (77%), Gaps = 11/125 (8%)

Query: 445 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPK 504
           Y+ECYPGY EYN EIVDSDDE D SKMD+G + KG L RWDFETEEE++ Y EQKEA+PK
Sbjct: 1   YAECYPGYLEYNDEIVDSDDEADYSKMDLGNK-KGPLGRWDFETEEEYSDYMEQKEALPK 59

Query: 505 AAFQFGVKMQDGRKTRKQN-KDQK--LTNELHKINKILARKKMEKDTNGEGGHYDDDVQP 561
           AAFQ+GVKMQDGRKTRKQ  KD+K  L  EL KINKILA++KMEKD  G GG  D     
Sbjct: 60  AAFQYGVKMQDGRKTRKQGPKDEKAELDRELQKINKILAKRKMEKD--GGGGGPD----- 112

Query: 562 GKKPR 566
            K+P+
Sbjct: 113 VKRPK 117

This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently. Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	567
KOG2498	544	consensus IK cytokine down-regulator of HLA class	100.0
PF07808	238	RED_N: RED-like protein N-terminal region; InterPr	100.0
PF07807	118	RED_C: RED-like protein C-terminal region; InterPr	100.0
KOG2498	544	consensus IK cytokine down-regulator of HLA class	99.86

>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-117  Score=926.25  Aligned_cols=451  Identities=47%  Similarity=0.737  Sum_probs=387.8

Q ss_pred             ccchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccc---cccccCCCCCcchHHHHHhhhhhhhhhhcC
Q 008381            3 SGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELG---SFHAVAPPGNVDLRLADAQKLSIEKSKYLG   79 (567)
Q Consensus         3 ~~kk~~~~k~~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~---~~~a~~~~~~~d~~~~e~~~~~ieesk~~g   79 (567)
                      .++|+||+++++++.+++.| .+.+|||||+|||+|.|.||..+++.   ++.+|.+....+...++.|+|+|++|+|||
T Consensus        65 e~~kal~~~~k~~h~~k~de-a~lkyRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~I~eSKfLG  143 (544)
T KOG2498|consen   65 EKKKALYGKLKKQHIEKEDE-AALKYRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQLIQESKFLG  143 (544)
T ss_pred             hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHHHHHhhhcC
Confidence            47899999999999999666 46779999999999999999987643   588999988888888999999999999999


Q ss_pred             CCccccccccchhHHHHHHHhhhhccCCCCCCCCCCCc-----cccccchhhhHhhH-----------HHHhhHhhhhcc
Q 008381           80 GDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKS-----RTSKEDQQLSFRTA-----------MAKSVYQWIVKP  143 (567)
Q Consensus        80 gd~~~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~~-----~~~k~d~~~~F~t~-----------~~r~Vy~~i~k~  143 (567)
                      |||+||||||||||+||++||.+|.....++++..+..     .+......+.|.++           |+|+||..||++
T Consensus       144 GDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~~~~~r~~~~~l~~n  223 (544)
T KOG2498|consen  144 GDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLKKKLGRNVYRVLFKN  223 (544)
T ss_pred             CccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhhhhhcchhhhHhhhc
Confidence            99999999999999999999999998876655442221     11112234555555           899999999998


Q ss_pred             cccccccccCCCCceEEEEecCCCCC-CCcchhhhhcccCCCC-CccccccccchhHHHHHHHHHHHHhcCCCCcc-hhh
Q 008381          144 QTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKV-LKK  220 (567)
Q Consensus       144 k~~~k~nelFlPGRMaYvfdLe~e~~-~DIPTTL~RSKaDcp~-~ee~~~~~~~~~Vi~Kl~kImsylR~G~~gK~-~KK  220 (567)
                      + ...+|++|+||||+||++|++++. .+|||||.||++|||. +++..++++|++||.+|.+|+||||.|.+.|+ ++|
T Consensus       224 ~-~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~~~k  302 (544)
T KOG2498|consen  224 K-EDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKPLKK  302 (544)
T ss_pred             c-ccccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCcccc
Confidence            6 478999999999999999999977 9999999999999999 78889999999999999999999999997665 566


Q ss_pred             hhhhhcccCCccccccccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccccCCCCCCCCCCCcccCCCcccc
Q 008381          221 KKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT  300 (567)
Q Consensus       221 kkkErd~kGr~~~~~~d~d~e~k~~k~~~~~~~~~~~~~~l~p~~~~p~~~~~~~~~k~~~~~~~~~dddIF~d~G~DY~  300 (567)
                      +.+..     .-     |+                         +                  ++..+.+||.+.| || 
T Consensus       303 rDk~k-----~~-----~~-------------------------~------------------P~~~~~~iy~~~g-~Y-  327 (544)
T KOG2498|consen  303 RDKPK-----LY-----FD-------------------------K------------------PVEGEKVIYEDEG-DY-  327 (544)
T ss_pred             ccccc-----cc-----cc-------------------------C------------------ccccccccccccc-cc-
Confidence            55431     00     00                         0                  1245789998777 99 


Q ss_pred             CCCCCCCCCCCccccccCcccccccCCCCcCCCCCCCCCCCCccccccCcchHHHHHHhhcCCcccchhhHHHhhhcccc
Q 008381          301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPE  380 (567)
Q Consensus       301 vP~~~~~~s~~sed~~~~~~~~~r~sYF~~p~~~p~pp~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~y~~~~~~~~~~  380 (567)
                      ||....+                                  .+.|+... |++++.+++..++..+|+.|+++    |.+
T Consensus       328 ~P~~~s~----------------------------------~~~~~~ks-~~a~qdrg~d~~~d~e~~~~rd~----~r~  368 (544)
T KOG2498|consen  328 VPSTPSA----------------------------------GSRDQGKS-YGAMQDRGRDRGRDRERQRYRDA----NRD  368 (544)
T ss_pred             cCCCCCC----------------------------------Cccccccc-cchhhhcccCCCCcchhhhhhhh----hhh
Confidence            8853111                                  12344433 78888889999999999999986    667


Q ss_pred             ccccchhhhHhhhhcCCCCCCcccccHHHHhhccCCcccchHHHHHHHHHhhhhccCCCCCCCccccccCChhhhhhccc
Q 008381          381 QYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIV  460 (567)
Q Consensus       381 q~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~gl~~~f~rdd~~~~~~re~~arekdp~f~~dsYAECYPG~~e~~~~~~  460 (567)
                      +|+++++.+|....-   ..+|..|++|++++|++++|.+++|+  |+++-.++++||-|+|+||+|||||++|||++||
T Consensus       369 r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~ECYPgl~em~hei~  443 (544)
T KOG2498|consen  369 RYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYAECYPGLQEMNHEIV  443 (544)
T ss_pred             hhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchhhhccchhhhccccc
Confidence            889888888876542   46799999999999999999999988  8899999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCCCCCcccCcCcCHHHHHHhhHhhhhchhhHHhhcccccccccccccc--hhhHhHHHHHHHHHH
Q 008381          461 DSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQN--KDQKLTNELHKINKI  538 (567)
Q Consensus       461 DSDDE~DysKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRK~n--~d~kLdre~~KI~~I  538 (567)
                      |||||+||||||||| |||+||||||||||||++||++||||||||||||||||||||||||+  .+|+|||||||||+|
T Consensus       444 ~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~~~~Ldre~~~InkI  522 (544)
T KOG2498|consen  444 DSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRNDKAELDRELHKINKI  522 (544)
T ss_pred             ccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccchHHHHHHHHHHHHHH
Confidence            999999999999999 79999999999999999999999999999999999999999999985  789999999999999


Q ss_pred             HHhhhcccCCCCCCCCc
Q 008381          539 LARKKMEKDTNGEGGHY  555 (567)
Q Consensus       539 l~krK~~~~~~~~~~~~  555 (567)
                      |.|||++++||++|+.|
T Consensus       523 i~krK~~~~ggggg~e~  539 (544)
T KOG2498|consen  523 ITKRKMEKDGGGGGAEY  539 (544)
T ss_pred             HHHhhccccCCCCcccc
Confidence            99999999999888433

>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT)

Probab=100.00  E-value=1.7e-62  Score=484.08  Aligned_cols=218  Identities=46%  Similarity=0.807  Sum_probs=192.6

Q ss_pred             cchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCcc
Q 008381            4 GKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVE   83 (567)
Q Consensus         4 ~kk~~~~k~~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~   83 (567)
                      |||+|++++++++..+..+ ++++|||||+|||+|.++||..+++..|+++.+.+.++..+++.++++|++|+|||||++
T Consensus         1 Kkk~~~~~~~~~~~~~~~~-~~~~YrDRA~eRR~~~~~d~~~~~~~~~~a~~~~~~~~~~~~e~~~~~i~esk~lGGD~~   79 (238)
T PF07808_consen    1 KKKKKYKKLKKQEEPKGKK-LAPGYRDRAKERREGENDDYEEAELSALRALEPDVKLDQETAERRRQLIEESKYLGGDLE   79 (238)
T ss_pred             CCchhhhhHHhhhcccccc-cccchhhHHHHHHcccCcchhhhHHHHHHHhhhhcccchhhHHHHHHHHHHHhhccCCcc
Confidence            7899999999999998887 699999999999999999999988888999999999999999999999999999999999


Q ss_pred             ccccccchhHHHHHHHhhhhccCCCCCCCCCCC---c--------------cccccchhhhHhhHHHHhhHhhh--hccc
Q 008381           84 HTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK---S--------------RTSKEDQQLSFRTAMAKSVYQWI--VKPQ  144 (567)
Q Consensus        84 ~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~---~--------------~~~k~d~~~~F~t~~~r~Vy~~i--~k~k  144 (567)
                      ||||||||||+||+|||++|..+..++++..+.   +              ........+.|.+.++++||+++  ++++
T Consensus        80 ~THLVKGLD~~LL~kvR~ei~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~I~~~~~~~~~~  159 (238)
T PF07808_consen   80 HTHLVKGLDFALLEKVRAEIAKKEKEEEEEEEKVEEEEEQELDEEEEELEEKEKESEEEIEFKTKLARNIFKTLFQFKSK  159 (238)
T ss_pred             ccchhhhhcHHHHHHHHHHHhcccccchhHHHhhhhhhhhhcchhhhhhhhhhcccccchhHhhHHHHHHHHHHHhcccc
Confidence            999999999999999999998876554431100   0              01123456999999999999999  4554


Q ss_pred             ccccccccCCCCceEEEEecCCCC-CCCcchhhhhcccCCCCCccccccccchhHHHHHHHHHHHHhcCCCCcchhhhhh
Q 008381          145 TVMKTNEMFLPGRMSFIFNTEGGY-SNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK  223 (567)
Q Consensus       145 ~~~k~nelFlPGRMaYvfdLe~e~-~~DIPTTL~RSKaDcp~~ee~~~~~~~~~Vi~Kl~kImsylR~G~~gK~~KKkkk  223 (567)
                      . ..+|++|+||||||||||++++ .+||||||+|||+|||.+++++++++|++||+||+|||||||+|+++|++|||+|
T Consensus       160 ~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsylr~g~~~kk~KKk~k  238 (238)
T PF07808_consen  160 K-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSYLRQGSRHKKNKKKKK  238 (238)
T ss_pred             c-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHHHhcccchhhhhccCC
Confidence            4 5679999999999999999998 5999999999999999999999999999999999999999999998888777653

This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus

>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT)

Probab=100.00  E-value=2.4e-58  Score=409.56  Aligned_cols=107  Identities=68%  Similarity=1.103  Sum_probs=101.5

Q ss_pred             cccccCChhhhhhcccCCCcccccccccCCCCCCCCcccCcCcCHHHHHHhhHhhhhchhhHHhhccccccccccccc--
Q 008381          445 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ--  522 (567)
Q Consensus       445 YAECYPG~~e~~~~~~DSDDE~DysKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRK~--  522 (567)
                      |||||||++||+++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+  
T Consensus         1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~   79 (118)
T PF07807_consen    1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE   79 (118)
T ss_pred             CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence            9999999999999999999999999999999 5999999999999999999999999999999999999999999996  


Q ss_pred             -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 008381          523 -NKDQKLTNELHKINKILARKKMEKDTNGEG  552 (567)
Q Consensus       523 -n~d~kLdre~~KI~~Il~krK~~~~~~~~~  552 (567)
                       +++++|||||++|++||++||++++++..+
T Consensus        80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~  110 (118)
T PF07807_consen   80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG  110 (118)
T ss_pred             hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence             467889999999999999999888766544

This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].

>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]

Probab=99.86  E-value=1.7e-22  Score=213.99  Aligned_cols=303  Identities=25%  Similarity=0.250  Sum_probs=239.6

Q ss_pred             CCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCccccccccchhHHHHH
Q 008381           18 EKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLN   97 (567)
Q Consensus        18 ~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~~t~lvkgld~~ll~   97 (567)
                      +++.+..-.+|+++++++|. .+++|+.....+++..++.+-.+......+  +++.+++|+|++.++|+|| ||+++|.
T Consensus        13 ~kL~ndDFRKLL~tpra~~p-a~~~~a~p~~ss~~~~~p~~~~~~~~~~Ar--~~e~~kal~~~~k~~h~~k-~dea~lk   88 (544)
T KOG2498|consen   13 SKLTNDDFRKLLATPRAARP-ANPTSAPPSKSSFHHEMPREYKEDEDKAAR--SREKKKALYGKLKKQHIEK-EDEAALK   88 (544)
T ss_pred             hhcccchhHHHhcCcccCCC-CCcccCCcccCcccccCChhhhccccchhh--hhhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence            44555556899999999998 689999988889999998877766554444  6788999999999999999 9999998


Q ss_pred             HHhhhhccCCCCCCCCCCCccccccchhhhHhhHHHHhhHhhhhcccccccccccCCCCceEEEEecCCCCCCCcchhhh
Q 008381           98 KVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLH  177 (567)
Q Consensus        98 ~~r~~~~~~~~~ede~~~~~~~~k~d~~~~F~t~~~r~Vy~~i~k~k~~~k~nelFlPGRMaYvfdLe~e~~~DIPTTL~  177 (567)
                       +|.++.......+.+.++...+.+.+.+.|.+.+.+.+++++.+.+. +..+ +||+|+|.++..+..-....|++++.
T Consensus        89 -yRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~-I~eS-KfLGGDm~hTHLVkGLD~~LL~KVRs  165 (544)
T KOG2498|consen   89 -YRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQL-IQES-KFLGGDMEHTHLVKGLDYALLQKVRS  165 (544)
T ss_pred             -HHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHH-HHHh-hhcCCccceeeeecchhHHHHHHHHH
Confidence             77777766554333323333456778899999999999999998875 3344 99999999999999888899999999


Q ss_pred             hcccCCCCCccccccccch--hHHHHHHHHHHHHhcCCCCcchhhhhhhhcccCCccccccccccccCCCCCCCCCCCCC
Q 008381          178 RSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGK  255 (567)
Q Consensus       178 RSKaDcp~~ee~~~~~~~~--~Vi~Kl~kImsylR~G~~gK~~KKkkkErd~kGr~~~~~~d~d~e~k~~k~~~~~~~~~  255 (567)
                      ++.+.|+..++.++..+++  ++.+.+.+|+++||+|..++.++ ++..+...  .+++-+++++-..-.....++....
T Consensus       166 e~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~-~~~~r~~~--~~l~~n~~~~~n~Lf~~GrmaYVvi  242 (544)
T KOG2498|consen  166 EIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLK-KKLGRNVY--RVLFKNKEDERNELFAPGRMAYVVI  242 (544)
T ss_pred             HhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhh-hhhcchhh--hHhhhccccccccccCCCCcceeee
Confidence            9999999999989999999  99999999999999999999999 45566544  3445666665445556666777888


Q ss_pred             cccccCCCCCCC-CCCCCCc-cccccCCCCCCCCCCCcccCCCccccCCCCCCCCCCCccccccCcccccccCCCCcCCC
Q 008381          256 TEKEILPPPPPP-PKKNHVD-SREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVY  333 (567)
Q Consensus       256 ~~~~~l~p~~~~-p~~~~~~-~~~k~~~~~~~~~dddIF~d~G~DY~vP~~~~~~s~~sed~~~~~~~~~r~sYF~~p~~  333 (567)
                      .+.++++|+.|. +.-+..+ +.-...+++....|+.||...+++|.++..+..+++      .+.|++.+ +||..|++
T Consensus       243 LddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P~~  315 (544)
T KOG2498|consen  243 LDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKPVE  315 (544)
T ss_pred             ccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCccc
Confidence            999999988884 4445556 444556777889999999999999988988777764      34555666 88888776


Q ss_pred             CCCC
Q 008381          334 GPVP  337 (567)
Q Consensus       334 ~p~p  337 (567)
                      +--.
T Consensus       316 ~~~~  319 (544)
T KOG2498|consen  316 GEKV  319 (544)
T ss_pred             cccc
Confidence            6443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	567
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 85/543 (15%), Positives = 158/543 (29%), Gaps = 180/543 (33%)

Query: 21  EEPEQPKYR---DRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKY 77
           EE  +  Y+      K   E + P                   D    D Q  +    KY
Sbjct: 84  EEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQR--------DRLYNDNQVFA----KY 129

Query: 78  LGGDVEHTHLVKGLDYALLNKVRSE----IDKKPDAGDDTDGKS-------RTSKEDQQL 126
              +V        L  ALL ++R      ID     G    GK+        + K   ++
Sbjct: 130 ---NVSRLQPYLKLRQALL-ELRPAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKM 180

Query: 127 SFRTAMAKSVYQWI-----VKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLHRSKA 181
            F+      ++ W+       P+TV++  +  L  ++   + +   +S++I   +H  +A
Sbjct: 181 DFK------IF-WLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 182 ------------------D--------------CPVPDEMVTVSVDGSVLDRI-AKIMTY 208
                                            C +   ++T +    V D + A   T+
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLT-TRFKQVTDFLSAATTTH 288

Query: 209 LRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPP 268
           + L      L       +VK      ++    +D P +  +  P                
Sbjct: 289 ISLDHHSMTLT----PDEVKSLLLKYLDC-RPQDLPREVLTTNP--------R------- 328

Query: 269 KKNHVDSREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEES-----P---- 319
               +        I+A S  D +   A  D     K +N   ++  +E S     P    
Sbjct: 329 ---RLS-------IIAESIRDGL---ATWDNW---KHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 320 RNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQ------AQALAGGYQGEWQDYQY- 372
           +  +++S F  S    +P     L W D    D M         +L    + + ++    
Sbjct: 373 KMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPKESTIS 427

Query: 373 -----------AEQLAYP-----EQYLQPDMQTYEMQAGLNMPQDPRF----------MT 406
                       E          + Y  P  +T++    +    D  F          + 
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 407 QEEKDRGLGSVFKRDDQRLLQ--LREKDAREKDPNFISESYSECYPGYQEYNREIVDSDD 464
             E+      VF   D R L+  +R           I  +  +     + Y   I D+D 
Sbjct: 486 HPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDP 539

Query: 465 EDD 467
           + +
Sbjct: 540 KYE 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00