Citrus Sinensis ID: 008404

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------

MDMLSNLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFSIENV

ccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccEEEEEEccccccEEccEEEEEcccccccccHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc

ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEEEccHHHEEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEcccEEEEEcHHHHHHccHHHHHHHHHHccccccccEEEEEEccHHHHHHEEEEEccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHccccEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcc

MDMLSNLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKtnrldiplkvaiffplpalFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVvdgtwgtikgscTMVRDFADLCYHSYPIFLKeiresphsnelqplrlfhvpgCIIAGllglvvdiPLYTVIAVIKSPYMLFKGWFRLLHDLIsregpfletacipiagltiLLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYlregtilpkpryrqkkvhssselpvggnqvaggkftsasadapamlmpslAHSRSVREAIQEVKMVQIWVNMMRSCETRGrelldadvitpaDLKDWLKAkcvneeaivgfglpCYSFLQTLLYSIkagsgglllpdsveithlnrpnnklldwfFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERmeawdnggllpeDALRAAQIQGISRRMIGLIrsvskfptyRRRFRQVVKALVSYSesrpetsrsdsirSVFSIENV

MDMLSNLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKkvhssselpvggnqVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVlkltepevrYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGlirsvskfptyrrrFRQVVKALvsysesrpetsrsdsirsvfsienv

MDMLSNLQGWLKIIYVgfafclafflgalkgllVCPvagliliignvgviiglFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPiivigsiviaifssifigLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSDSIRSVFSIENV

*****NLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILP*************************************************EAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVS***********************

*********WLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLK**************RLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPK*************************************************AIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTE***************LRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVS*******************IENV

MDMLSNLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPR***********LPVGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL****************RSVFSIENV

*****NLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQ**************************************SRSVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRP********RSV******

ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		567	2.2.26 [Sep-21-2011]
Q8GUM4		588	Uncharacterized membrane	no	no	0.908	0.875	0.400	1e-112

>sp\|Q8GUM4\|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2	Back alignment and function desciption

 Score =  407 bits (1046), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/534 (40%), Positives = 315/534 (58%), Gaps = 19/534 (3%)

Query: 25  FLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAWTVYTLVKTNRLDIPLKVAIFFPLP 84
           FLG +KG+++CP+  L++ IGN  VI+ L P H+ WT Y++V   ++   LK+ +   LP
Sbjct: 26  FLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIVWTFYSIVSAKQVGPILKIFLCLCLP 85

Query: 85  ALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDNEYKKLFHCVVDGTWGTIKGSCT 144
           A   LW  + I GSVL G  YGFF+P  + F+A      Y+  FHC  DGTW T++ S T
Sbjct: 86  AAIILWPIVGILGSVLGGALYGFFSPIFATFDAVGEGKPYQ-FFHCFYDGTWSTMQRSFT 144

Query: 145 MVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVPGCIIAGLLGLVVDIPLYTVIAV 204
           +VRDF D+C+HSY   + E+++S    +   +RL  +PG ++  +LG++VD P+ +++A+
Sbjct: 145 VVRDFKDVCFHSYFSLMDELKQSCPDRKYYEIRLLQLPGALVVSVLGILVDPPVISLVAI 204

Query: 205 IKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTILLWPIIVIGSIVIAIFSSIFIG 264
            KSPYMLFKGW RL HDLI REGPFLET C+PIAGL ILLWP+ V G+++ ++ SSIF+G
Sbjct: 205 CKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLG 264

Query: 265 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 324
            Y  VV YQE SF  G+ Y++A V+ +DEY+ D L L EG+  P+P+YR+K    +   P
Sbjct: 265 AYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPT---P 321

Query: 325 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQIWVNMMRSCETRGRELL 384
             G     G   +AS+              SVR  + ++K + +   +   C   G  L 
Sbjct: 322 FSGPVPRLGSVKNASS----------MRGGSVRVPMIDIKPLDLLNELFVECRRYGEVLA 371

Query: 385 DADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLLPDSV-EITH 443
              +I   D+++   A+      ++  GLP Y  L  +L S+KA S GLLL D V EIT 
Sbjct: 372 TKGLINSKDIEE---ARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITT 428

Query: 444 LNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDNGGLLPE 503
           +NRP +   DWF NP ++LKEQ+    L+E E  YL ++VL     ER+++ +     P 
Sbjct: 429 MNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERLKSSNAISASPP 488

Query: 504 DALRA-AQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKALVSYSESRPETSRSD 556
              R  A++   +RRM GL ++VS++PT+RR F  +VK L    + +   S  D
Sbjct: 489 LTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDNNSAKD 542

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		567
224094386		570	predicted protein [Populus trichocarpa]	0.994	0.989	0.691	0.0
356565614		594	PREDICTED: uncharacterized membrane prot	0.971	0.927	0.724	0.0
358348218		597	Membrane protein, putative [Medicago tru	0.970	0.921	0.689	0.0
225438680		559	PREDICTED: uncharacterized membrane prot	0.964	0.978	0.714	0.0
79497780		569	uncharacterized protein [Arabidopsis tha	0.994	0.991	0.683	0.0
52354427		569	hypothetical protein AT4G37030 [Arabidop	0.994	0.991	0.679	0.0
255565138		561	conserved hypothetical protein [Ricinus	0.925	0.935	0.725	0.0
297798176		569	hypothetical protein ARALYDRAFT_912643 [	0.996	0.992	0.685	0.0
358349420		532	Membrane protein, putative [Medicago tru	0.902	0.962	0.699	0.0
242075984		577	hypothetical protein SORBIDRAFT_06g01827	0.957	0.941	0.632	0.0

>gi\|224094386\|ref\|XP_002310151.1\| predicted protein [Populus trichocarpa] gi\|222853054\|gb\|EEE90601.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/573 (69%), Positives = 478/573 (83%), Gaps = 9/573 (1%)

Query: 1   MDMLSNLQGWLKIIYVGFAFCLAFFLGALKGLLVCPVAGLILIIGNVGVIIGLFPAHVAW 60
           M   +NL GWL+ +YV FAFC AFFLGALKGLLV P+A  +LI+GN  VI+G+ P H++W
Sbjct: 1   MGKSNNLHGWLRFLYVIFAFCSAFFLGALKGLLVGPIAASVLILGNGAVILGMLPPHISW 60

Query: 61  TVYTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRN 120
           T YTLVKT+R DIPLKVA+   LPALFG+WLGLSIAG+VLVG+GYGFF PW+++FEAFR+
Sbjct: 61  TFYTLVKTDRFDIPLKVALLVALPALFGIWLGLSIAGTVLVGLGYGFFAPWIASFEAFRH 120

Query: 121 DN------EYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQ 174
           D+      E+K L+HCVVDGTWG IKGSCT+V DFAD+C HSYP++LKE+RES  SNE++
Sbjct: 121 DDDDDDDDEFKTLYHCVVDGTWGIIKGSCTVVTDFADICCHSYPLYLKELRESSASNEIR 180

Query: 175 PLRLFHVPGCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETAC 234
            LRL HVPGCIIAGL+GL+VD+PL+  IA+IKSPYMLFKGW+RLLHDLI REGPFLETAC
Sbjct: 181 TLRLIHVPGCIIAGLVGLIVDVPLFAAIAIIKSPYMLFKGWYRLLHDLIGREGPFLETAC 240

Query: 235 IPIAGLTILLWPIIVIGSIVIAIFSSIFIGLYGSVVVYQERSFRRGVAYVIAMVAEFDEY 294
           IPIAGLTILLWP++V+GS+++ IFSSIFIGLY SV++YQERSF R VAYVIAMVAEFDEY
Sbjct: 241 IPIAGLTILLWPLVVVGSVLVTIFSSIFIGLYASVILYQERSFWRAVAYVIAMVAEFDEY 300

Query: 295 TNDWLYLREGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSASADAPAMLMPSLAHSR 354
           TND LYLREGT LPKP+Y++K    SSEL VGG+     KF+S   +APAML+PS AHS+
Sbjct: 301 TNDRLYLREGTFLPKPKYQKKGTSHSSELSVGGSL---AKFSSVHVEAPAMLVPSFAHSK 357

Query: 355 SVREAIQEVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLP 414
           SVRE +QEVKMVQ+W  MMRSCE RGR+LLD+  IT ADL ++LKA+  NE +++  GLP
Sbjct: 358 SVRETVQEVKMVQVWGVMMRSCEMRGRDLLDSGAITLADLSNYLKARGGNEASVICVGLP 417

Query: 415 CYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEP 474
           CYSFLQ+LL SIKAGS G LL D  EITH NRPN+KL DWFF P+MVLKEQI V+KL E 
Sbjct: 418 CYSFLQSLLNSIKAGSDGFLLSDGTEITHHNRPNDKLFDWFFQPLMVLKEQIRVIKLEEG 477

Query: 475 EVRYLEKVVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRR 534
           E R+L++VVL+G+ T+RME WDNG L+P++ALRAAQIQGI+RRMIG+IR +SKFPTYRRR
Sbjct: 478 EERFLQRVVLYGNDTQRMETWDNGSLVPQEALRAAQIQGITRRMIGMIRGISKFPTYRRR 537

Query: 535 FRQVVKALVSYSESRPETSRSDSIRSVFSIENV 567
           FRQVVKAL++Y   +   +RS S+RSV SIENV
Sbjct: 538 FRQVVKALIAYYAEKEGVTRSSSMRSVASIENV 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356565614\|ref\|XP_003551034.1\| PREDICTED: uncharacterized membrane protein At3g27390-like [Glycine max]	Back alignment and taxonomy information

>gi\|358348218\|ref\|XP_003638145.1\| Membrane protein, putative [Medicago truncatula] gi\|358349418\|ref\|XP_003638734.1\| Membrane protein, putative [Medicago truncatula] gi\|355504080\|gb\|AES85283.1\| Membrane protein, putative [Medicago truncatula] gi\|355504669\|gb\|AES85872.1\| Membrane protein, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225438680\|ref\|XP_002277444.1\| PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera] gi\|296082433\|emb\|CBI21438.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|79497780\|ref\|NP_195420.2\| uncharacterized protein [Arabidopsis thaliana] gi\|61742737\|gb\|AAX55189.1\| hypothetical protein At4g37030 [Arabidopsis thaliana] gi\|332661339\|gb\|AEE86739.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|52354427\|gb\|AAU44534.1\| hypothetical protein AT4G37030 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255565138\|ref\|XP_002523561.1\| conserved hypothetical protein [Ricinus communis] gi\|223537123\|gb\|EEF38756.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297798176\|ref\|XP_002866972.1\| hypothetical protein ARALYDRAFT_912643 [Arabidopsis lyrata subsp. lyrata] gi\|297312808\|gb\|EFH43231.1\| hypothetical protein ARALYDRAFT_912643 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|358349420\|ref\|XP_003638735.1\| Membrane protein, putative [Medicago truncatula] gi\|355504670\|gb\|AES85873.1\| Membrane protein, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|242075984\|ref\|XP_002447928.1\| hypothetical protein SORBIDRAFT_06g018270 [Sorghum bicolor] gi\|241939111\|gb\|EES12256.1\| hypothetical protein SORBIDRAFT_06g018270 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		567
TAIR\|locus:2114960		569	AT4G37030 "AT4G37030" [Arabido	0.992	0.989	0.618	1.6e-182
TAIR\|locus:2135748		575	AT4G12680 "AT4G12680" [Arabido	0.837	0.826	0.445	4.6e-105
TAIR\|locus:2168803		586	AT5G40640 [Arabidopsis thalian	0.899	0.870	0.381	2.4e-92
TAIR\|locus:2086726		588	AT3G27390 "AT3G27390" [Arabido	0.892	0.860	0.371	2.1e-91

TAIR\|locus:2114960 AT4G37030 "AT4G37030" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1771 (628.5 bits), Expect = 1.6e-182, P = 1.6e-182
 Identities = 349/564 (61%), Positives = 410/564 (72%)

Query:     3 MLSNLQGWLKIIYVXXXXXXXXXXXXXXXXXVCPXXXXXXXXXXXXXXXXXFPAHVAWTV 62
             +++NL   LKI YV                 V P                 FPAHV WT+
Sbjct:     4 VVTNLGSCLKISYVIFAFCSAFFLGAIKGLIVGPIAGLTLIVGNVGVILCLFPAHVTWTI 63

Query:    63 YTLVKTNRLDIPLKVAIFFPLPALFGLWLGLSIAGSVLVGVGYGFFTPWVSAFEAFRNDN 122
             Y + KTNR DIPLKVAI   LPALFG+WLGLS+A SVLVGVGYGFFTPW+SAFEAFR D 
Sbjct:    64 YAVAKTNRFDIPLKVAILVALPALFGIWLGLSLAISVLVGVGYGFFTPWISAFEAFRQDT 123

Query:   123 EYKKLFHCVVDGTWGTIKGSCTMVRDFADLCYHSYPIFLKEIRESPHSNELQPLRLFHVP 182
             E  K FHC+VDGTWGTIKGSC +V DFAD CYHSYP++LKE+RESP S+ELQ LRL HVP
Sbjct:   124 ESNKFFHCLVDGTWGTIKGSCIVVTDFADFCYHSYPLYLKELRESPVSDELQTLRLIHVP 183

Query:   183 GCIIAGLLGLVVDIPLYTVIAVIKSPYMLFKGWFRLLHDLISREGPFLETACIPIAGLTI 242
             GCII G+LGLV+DIPL+T IAVIKSPY+L KGW+RL  D I+REGPFLE ACIP+AGLT+
Sbjct:   184 GCIIVGILGLVIDIPLFTAIAVIKSPYLLLKGWYRLAQDAINREGPFLEIACIPVAGLTV 243

Query:   243 LLWPXXXXXXXXXXXXXXXXXXLYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLR 302
             LLWP                  LYG+VVV+QERSFRRGV+YVIA+V EFDEYTNDWLYLR
Sbjct:   244 LLWPIVVIGFILVTIFSSIFVGLYGAVVVFQERSFRRGVSYVIAVVGEFDEYTNDWLYLR 303

Query:   303 EGTILPKPRYRQKKVHSSSELPVGGNQVAGGKFTSA-SADAPAMLMPSLAHSRSVREAIQ 361
             EGTI PKPRYR  +   SSE+ V  +     +  S+ S DAPAML+PSL HS SVREAIQ
Sbjct:   304 EGTIFPKPRYRMGRGSFSSEVSVIVHPSDVTRVNSSGSVDAPAMLVPSLVHSVSVREAIQ 363

Query:   362 EVKMVQIWVNMMRSCETRGRELLDADVITPADLKDWLKAKCVNEEAIVGFGLPCYSFLQT 421
             EV+MVQIW +MM   E +G+ELLDA+V+TP DL + LK +  NE +I+  GLP Y+ L T
Sbjct:   364 EVRMVQIWEHMMGWFEMQGKELLDAEVLTPTDLYESLKGRHGNESSIINVGLPSYALLHT 423

Query:   422 LLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEK 481
             LL SIKAG  G+LL D  E+THLNRP +K LDW FNPIMVLK+QI  LKL E EV+YLEK
Sbjct:   424 LLSSIKAGVHGVLLLDGSEVTHLNRPQDKFLDWVFNPIMVLKDQIRALKLGESEVKYLEK 483

Query:   482 VVLFGSTTERMEAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKA 541
             VVLFG+  +RMEAWDN    P++ LR AQIQGISRRM+G++RSVSK PTYRRRFRQVVKA
Sbjct:   484 VVLFGNHEQRMEAWDNHSNPPQENLRTAQIQGISRRMMGMVRSVSKLPTYRRRFRQVVKA 543

Query:   542 LVSYSESRPETSRSDSIRSVFSIE 565
             L++Y   +   +R+ S+ S   IE
Sbjct:   544 LITYYSEKQGLNRTGSMSSGDFIE 567

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2135748 AT4G12680 "AT4G12680" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168803 AT5G40640 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2086726 AT3G27390 "AT3G27390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_VII000342	hypothetical protein (570 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		567
cd06941		195	NR_LBD_DmE78_like The ligand binding domain of Dro	95.2
smart00430		163	HOLI Ligand binding domain of hormone receptors.	94.11
cd06940		189	NR_LBD_REV_ERB The ligand binding domain of REV-ER	94.08
cd06944		237	NR_LBD_Ftz-F1_like The ligand binding domain of FT	93.16
cd06931		222	NR_LBD_HNF4_like The ligand binding domain of hept	92.79
cd07069		241	NR_LBD_Lrh-1 The ligand binding domain of the live	92.74
cd06945		239	NR_LBD_Nurr1_like The ligand binding domain of Nur	92.48
cd06937		231	NR_LBD_RAR The ligand binding domain (LBD) of reti	92.47
cd06943		207	NR_LBD_RXR_like The ligand binding domain of the r	91.71
cd06935		243	NR_LBD_TR The ligand binding domain of thyroid hor	91.4
cd06930		165	NR_LBD_F2 Ligand-binding domain of nuclear recepto	91.06
cd06929		174	NR_LBD_F1 Ligand-binding domain of nuclear recepto	89.91
cd07075		248	NR_LBD_MR Ligand binding domain of the mineralocor	89.79
cd06948		236	NR_LBD_COUP-TF Ligand binding domain of chicken ov	89.48
cd07076		247	NR_LBD_GR Ligand binding domain of the glucocortic	89.45
PF00104		203	Hormone_recep: Ligand-binding domain of nuclear ho	89.25
cd06950		206	NR_LBD_Tlx_PNR_like The ligand binding domain of T	89.11
cd06938		231	NR_LBD_EcR The ligand binding domain (LBD) of the	88.76
cd06954		236	NR_LBD_LXR The ligand binding domain of Liver X re	88.43
cd06942		191	NR_LBD_Sex_1_like The ligand binding domain of Cae	88.04
cd07070		237	NR_LBD_SF-1 The ligand binding domain of nuclear r	87.1
cd06949		235	NR_LBD_ER Ligand binding domain of Estrogen recept	86.26
cd06932		259	NR_LBD_PPAR The ligand binding domain of peroxisom	85.51
cd07068		221	NR_LBD_ER_like The ligand binding domain of estrog	82.32
cd07071		238	NR_LBD_Nurr1 The ligand binding domain of Nurr1, a	80.63
cd06157		168	NR_LBD The ligand binding domain of nuclear recept	80.36

>cd06941 NR_LBD_DmE78_like The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily	Back alignment and domain information

Probab=95.20  E-value=0.14  Score=48.31  Aligned_cols=112  Identities=15%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             HHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccccC
Q 008404          418 FLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAWDN  497 (567)
Q Consensus       418 lL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~wd~  497 (567)
                      +++ +-++...+++++.+.||..++..+-.....-+ +.+++.-+=++++.++++++|=.||+-++|++.|.....    
T Consensus        49 ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ld~~E~allkAi~Lf~pd~~gl~----  122 (195)
T cd06941          49 LVR-ISRLINSKSGSITFDDGISISRQQLDIIYDSD-FVKALFEFSDSFNSLGLSDTEVALFCAVVLLSPDRIGLS----  122 (195)
T ss_pred             HHH-HHHHHcCCCCeEEecCCeEeeHHHHHhccchH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCCCCCC----
Confidence            444 44677778888999999776644321100112 456777788899999999999999999999998754433    


Q ss_pred             CCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404          498 GGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL  542 (567)
Q Consensus       498 ~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L  542 (567)
                          ..+.+++.|= .+..-|+.-+.  +++|....||-+++..|
T Consensus       123 ----~~~~Ve~lq~-~~~~aL~~~i~--~~~p~~~~rf~~Ll~~L  160 (195)
T cd06941         123 ----EPKKVAILQD-RVLEALKVQVS--RNRPAEAQLFASLLMKI  160 (195)
T ss_pred             ----CHHHHHHHHH-HHHHHHHHHHH--hhCCCcccHHHHHHHHh
Confidence                4445555541 11222333333  46788889999887654

The ligand binding domain (LBD) of Drosophila ecdysone-induced protein 78 (E78) like: Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. Two isoforms of E78, E78A and E78B, are expressed from two nested transcription units. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. SmE78 may be involved in transduction of an ecdysone signal in S. mansoni, consistent with its function in Drosophila. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, E78-like receptors ha

>smart00430 HOLI Ligand binding domain of hormone receptors	Back alignment and domain information

>cd06940 NR_LBD_REV_ERB The ligand binding domain of REV-ERB receptors, members of the nuclear receptor superfamily	Back alignment and domain information

>cd06944 NR_LBD_Ftz-F1_like The ligand binding domain of FTZ-F1 like nuclear receptors	Back alignment and domain information

>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes	Back alignment and domain information

>cd07069 NR_LBD_Lrh-1 The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,	Back alignment and domain information

>cd06945 NR_LBD_Nurr1_like The ligand binding domain of Nurr1 and related nuclear receptor proteins, members of nuclear receptor superfamily	Back alignment and domain information

>cd06937 NR_LBD_RAR The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily	Back alignment and domain information

>cd06943 NR_LBD_RXR_like The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily	Back alignment and domain information

>cd06935 NR_LBD_TR The ligand binding domain of thyroid hormone receptor, a members of a superfamily of nuclear receptors	Back alignment and domain information

>cd06930 NR_LBD_F2 Ligand-binding domain of nuclear receptor family 2	Back alignment and domain information

>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1	Back alignment and domain information

>cd07075 NR_LBD_MR Ligand binding domain of the mineralocorticoid receptor, a member of the nuclear receptor superfamily	Back alignment and domain information

>cd06948 NR_LBD_COUP-TF Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family	Back alignment and domain information

>cd07076 NR_LBD_GR Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily	Back alignment and domain information

>PF00104 Hormone_recep: Ligand-binding domain of nuclear hormone receptor; InterPro: IPR000536 Steroid or nuclear hormone receptors constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis	Back alignment and domain information

>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors	Back alignment and domain information

>cd06938 NR_LBD_EcR The ligand binding domain (LBD) of the Ecdysone receptor, a member of the nuclear receptors super family	Back alignment and domain information

>cd06954 NR_LBD_LXR The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors	Back alignment and domain information

>cd06942 NR_LBD_Sex_1_like The ligand binding domain of Caenorhabditis elegans nuclear hormone receptor Sex-1 protein	Back alignment and domain information

>cd07070 NR_LBD_SF-1 The ligand binding domain of nuclear receptor steroidogenic factor 1, a member of nuclear receptor superfamily	Back alignment and domain information

>cd06949 NR_LBD_ER Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)	Back alignment and domain information

>cd06932 NR_LBD_PPAR The ligand binding domain of peroxisome proliferator-activated receptors	Back alignment and domain information

>cd07068 NR_LBD_ER_like The ligand binding domain of estrogen receptor and estrogen receptor-related receptors	Back alignment and domain information

>cd07071 NR_LBD_Nurr1 The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors	Back alignment and domain information

>cd06157 NR_LBD The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		567
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 52/353 (14%), Positives = 101/353 (28%), Gaps = 84/353 (23%)

Query: 265 LYGSVVVYQERSFRRGVAYVIAMVAEFDEYTNDWLYLREGTILPKPRYRQKKVHSSSELP 324
           L+ +++  QE   ++        V E       +L     T   +P    +      +  
Sbjct: 67  LFWTLLSKQEEMVQK-------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 325 VGGNQVAGGKFTSASADAPAMLMPSLAHSRSVREAIQEVKMVQ-IWVNMMRSCETRGREL 383
              NQV    F           +  L     +R+A+ E++  + + ++ +      G+  
Sbjct: 120 YNDNQV----F-------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTW 165

Query: 384 LDADVITPADLKD-------WLK-AKCVNEEAIVGFGLPCYSFLQTLLYSIKAGSGGLLL 435
           +  DV     ++        WL    C + E ++         LQ LLY I         
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTSRSD 218

Query: 436 PDSVEITHLNRPNNKL---------------LD--W------FFN---PIMVLKEQISV- 468
             S     ++    +L               L           FN    I++      V 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 469 --LKLTEPEVRYLEKVVLFGSTTERME---AWDNGGL--LPEDALRAAQIQGISRRMIGL 521
             L         L+   +  +  E       + +     LP + L        + R + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL------TTNPRRLSI 332

Query: 522 I-RSVSKFPTYRRRFRQV-VKALVSYSESRPETSRSDSIRSVF---SI--ENV 567
           I  S+         ++ V    L +  ES          R +F   S+   + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		567
1pzl_A		237	Hepatocyte nuclear factor 4-alpha; transcription;	94.65
2p1t_A		240	Retinoic acid receptor RXR-alpha; protein-ligand c	93.96
2nxx_A		235	Ultraspiracle (USP, NR2B4); hormone receptor, APO	93.89
2iz2_A		243	FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuc	93.74
3k6p_A		248	Steroid hormone receptor ERR1; estrogen related re	92.72
3ltx_A		243	Estrogen receptor; constitutive, nuclear receptor,	92.15
3oll_A		240	Estrogen receptor beta; steroid binding, phosphory	92.11
1lbd_A		282	RXR_LBD, retinoid X receptor; transcription factor	90.85
1ymt_A		246	Steroidogenic factor 1; SF-1, ligand-binding domai	90.74
1g2n_A		264	Ultraspiracle protein; antiparallel alpha-helical	90.14
1fcy_A		236	RAR-gamma-1, retinoic acid receptor gamma-1; isoty	90.06
2e2r_A		244	Estrogen-related receptor gamma; ERR gamma, BPA, n	90.05
3kmr_A		266	Retinoic acid receptor alpha; nuclear receptor tra	90.03
3tx7_B		352	Nuclear receptor subfamily 5 group A member 2; LRH	89.67
3plz_A		257	FTZ-F1 related protein; alpha helical sandwhich, f	89.64
3dzy_A		467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	89.17
1l2j_A		271	Estrogen receptor beta; nuclear receptor, transcri	89.08
3mnp_A		261	Glucocorticoid receptor; protein-ligand complex, s	89.08
3ipq_A		283	Oxysterols receptor LXR-alpha; LXR homodimer, LXR	88.54
1yye_A		268	ER-beta, estrogen receptor beta; ER-beta, nuclear	87.4
3v3e_B		257	Nuclear receptor subfamily 4 group A member 1; orp	87.29
3ilz_A		267	Thyroid hormone receptor, alpha isoform 1 variant;	87.12
3cqv_A		199	Nuclear receptor subfamily 1 group D member 2; rev	86.99
1ovl_A		271	Orphan nuclear receptor NURR1 (MSe 414, 496, 511);	86.12
1xdk_B		303	RAR-beta, retinoic acid receptor, beta; nuclear re	85.78
2ocf_A		298	Estrogen receptor; estrogen receptor, LBD, monobod	85.2
3n00_A		245	REV-ERBA-alpha; reverba ncorid1, anti-parallel B-s	84.42
1sqn_A		261	PR, progesterone receptor; nuclear receptor, stero	83.49
3cjw_A		244	COUP transcription factor 2; COUP-TFII, nuclear re	82.73
1xvp_B		246	Orphan nuclear receptor NR1I3; CAR, RXR, citco, SR	82.05
2r40_D		266	Ecdysone receptor, 20-hydroxy-ecdysone receptor; n	81.0
1t7r_A		269	Androgen receptor; nuclear receptor, transcription	80.86
1nq7_A		244	Nuclear receptor ROR-beta; ligand-binding domain,	80.2

>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*	Back alignment and structure

Probab=94.65  E-value=0.26  Score=45.16  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHH-HHHHHHHhccCChhHHhHHHHhhhcCCCcccc
Q 008404          414 PCYSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIM-VLKEQISVLKLTEPEVRYLEKVVLFGSTTERM  492 (567)
Q Consensus       414 PayslL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~Pll-viKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~  492 (567)
                      ..+.+|..--+|.+ +++.+++.||..+.. +.++..-+.-++++++ -+-+.++.+++|++|=.||+-+++++.|....
T Consensus        84 ~~~~~L~~a~~s~~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l  161 (237)
T 1pzl_A           84 GEHLLLGATKRSMV-FKDVLLLGNDYIVPR-HCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGL  161 (237)
T ss_dssp             HHHHHHHHHHHHTT-SSSEEECTTSCEEES-SCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTC
T ss_pred             HHHHHHHHHHHhhc-cCCceeecCCcccCc-cchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCC
Confidence            35677777778876 678899999988754 3344322233456654 56689999999999999999999998765432


Q ss_pred             ccccCCCCCChhHHHHHHHHHHHHhhhhhhhhcccCchhhHhHHHHHHHH
Q 008404          493 EAWDNGGLLPEDALRAAQIQGISRRMIGLIRSVSKFPTYRRRFRQVVKAL  542 (567)
Q Consensus       493 ~~wd~~g~pp~d~vrrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L  542 (567)
                      .        ....+.+- -+.+++-|+--++  .+.|....||-++++.|
T Consensus       162 ~--------~~~~ve~~-q~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~l  200 (237)
T 1pzl_A          162 S--------DPGKIKRL-RSQVQVSLEDYIN--DRQYDSRGRFGELLLLL  200 (237)
T ss_dssp             S--------CHHHHHHH-HHHHHHHHHHHHH--SSSSCCTTHHHHHHTHH
T ss_pred             C--------cHHHHHHH-HHHHHHHHHHHHH--hcCCChhhHHHHHHHHH
Confidence            2        23333222 2233444444443  36777778998887766

PyMOL of 1pzl

>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...	Back alignment and structure

>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}	Back alignment and structure

>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A	Back alignment and structure

>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}	Back alignment and structure

>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...	Back alignment and structure

>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A	Back alignment and structure

>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*	Back alignment and structure

>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*	Back alignment and structure

>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*	Back alignment and structure

>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*	Back alignment and structure

>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*	Back alignment and structure

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}	Back alignment and structure

>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A	Back alignment and structure

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*	Back alignment and structure

>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1	Back alignment and structure

>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*	Back alignment and structure

>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*	Back alignment and structure

>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*	Back alignment and structure

>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A	Back alignment and structure

>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...	Back alignment and structure

>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A	Back alignment and structure

>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1	Back alignment and structure

>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1	Back alignment and structure

>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}	Back alignment and structure

>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}	Back alignment and structure

>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*	Back alignment and structure

>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}	Back alignment and structure

>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*	Back alignment and structure

>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*	Back alignment and structure

>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...	Back alignment and structure

>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		567
d2j7ya1		236	Estrogen receptor beta {Rat (Rattus norvegicus) [T	91.8
d2p1ta1		230	Retinoid-X receptor alpha (RXR-alpha) {Human (Homo	91.75
d1xpca_		245	Estrogen receptor alpha {Human (Homo sapiens) [Tax	91.5
d1pk5a_		242	Orphan nuclear receptor NR5a2 (LRH-1) {Mouse (Mus	90.75
d1pq9a_		239	Oxysterols receptor LXR-beta {Human (Homo sapiens)	90.55
d1pzla_		233	Hepatocyte nuclear factor 4-alpha {Human (Homo sap	90.43
d2e2ra1		223	Orphan nuclear receptor ERR3 {Human (Homo sapiens)	88.77
d3d24a1		227	Steroid hormone receptor ERR1 {Human (Homo sapiens	88.48
d1xvpb_		246	Orphan nuclear receptor NR1I3 (CAR) {Human (Homo s	88.38
d2r40d1		243	Ecdysone receptor {Noctuid moth (Heliothis viresce	87.32
d1n46a_		251	Thyroid hormone receptor beta (TR-beta) {Human (Ho	87.06
d1sqna_		251	Progesterone receptor {Human (Homo sapiens) [TaxId	85.3
d1nhza_		247	Glucocorticoid receptor {Human (Homo sapiens) [Tax	85.02
d2qw4a1		233	Orphan nuclear receptor NR4A1 {Human (Homo sapiens	83.51
d1g2na_		256	Ultraspiracle protein, usp {Heliothis virescens [T	82.17
d2b50b1		265	Peroxisome proliferator-activated receptor delta,	81.48
d1fcya_		236	Retinoic acid receptor gamma (RAR-gamma) {Human (H	80.99
d1ovla_		236	Orphan nuclear receptor NURR1 {Human (Homo sapiens	80.79

>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All alpha proteins
fold: Nuclear receptor ligand-binding domain
superfamily: Nuclear receptor ligand-binding domain
family: Nuclear receptor ligand-binding domain
domain: Estrogen receptor beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.80  E-value=0.39  Score=42.45  Aligned_cols=122  Identities=13%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhhhcCCCceeecCCceecccCCCCccchhhhchhHHHHHHHHHhccCChhHHhHHHHhhhcCCCccccccc
Q 008404          416 YSFLQTLLYSIKAGSGGLLLPDSVEITHLNRPNNKLLDWFFNPIMVLKEQISVLKLTEPEVRYLEKVVLFGSTTERMEAW  495 (567)
Q Consensus       416 yslL~~LL~SaKanS~GlllsD~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~~w  495 (567)
                      ..+|..--+|... +..+++++|...+....-...-+.=+.+.+.-+-+.++.++||++|=.||+-++|++.|.....  
T Consensus        77 l~~L~~a~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaIvLf~pd~~~l~--  153 (236)
T d2j7ya1          77 VLMVGLMWRSIDH-PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLA--  153 (236)
T ss_dssp             HHHHHHHHHHTTS-TTEEEEETTEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTCCCCC--
T ss_pred             HHHHHHHHHhhcC-CCcEEecCCcccCHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcCCCCc--
Confidence            3444444455543 4678888886665543322223344567777788889999999999999999999988764422  


Q ss_pred             cCCCCCCh--hHHHHHHHHHHHHhhhh-hhhhcccCchhhHhHHHHHHHH
Q 008404          496 DNGGLLPE--DALRAAQIQGISRRMIG-LIRSVSKFPTYRRRFRQVVKAL  542 (567)
Q Consensus       496 d~~g~pp~--d~vrrAqLqai~RRLqG-I~~s~SR~PT~RRrf~~lvK~L  542 (567)
                       +...--+  +.+..+ ++.....|+. +.+.-...|.-..||-+++..|
T Consensus       154 -~~~~~~~~~~~v~~~-~~~~~~~l~~~~~~~~~~~p~~~~Rf~~LL~~L  201 (236)
T d2j7ya1         154 -SANQEAESSRKLTHL-LNAVTDALVWVIAKSGISSQQQSVRLANLLMLL  201 (236)
T ss_dssp             -------HHHHHHHHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHH
Confidence             1110011  111111 1222222222 2223345677777888887554

PyMOL of d2j7ya1

>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth (Heliothis virescens) [TaxId: 7102]}	Back information, alignment and structure

>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis virescens [TaxId: 7102]}	Back information, alignment and structure

>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure