Citrus Sinensis ID: 008458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
Protein Sequence
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEccccccccEEEccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEcccccccccEEEcccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccc
Coil and Loop (DISEMBL)
medtevrvgdvadrtrgadvasasgaggggaryklmspaklpisrspcimippglspssflespvllsnvkaepspttgsffkpqavhasvgprtystttvcsntlnegeascfefrphsrsnmvpadlnpqrseqyvqtqgqcqtqsfassptikgemtvssnelsllgpiqmattgtivpaevdsdepkqmgqptagiqashsdhkgggpsmpsddgynwrkygqkhvkgsefprsyykcthpncevkklfershdgqiTEIIYkgthdhpkpqlsrrysagnmmsiqeerpdkvssltcrdgsmygqmshametngtpdlspvanddsvepdvddddqyskRRKMDALVadvtpvvkpireprvvvqtlsevdilddgyrwrkygqkvvrgnpnpsrsyykctnagcpvrkhverashdpkAVITTyegkhnhdvptartsshdaagpsagngpcriiseeGEAISLDLgvgissatenrsneqpqALHSElahshphassssyKIIQANAVTAYSGVvnggmnqygsrgnptegrgvdfpplnhssypypqnigriltgp
Flexible Loop (DISEMBL)
medtevrvgdvadrtrgadvasasgaggggarYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIqashsdhkgggpsmpSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIiykgthdhpkpQLSRRYSAGNMMSIqeerpdkvsslTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDddqyskrrkmdalvadvtpvvkpireprvvvqtlsevdilddgyrwrkygqkvvrgnpnpsrsyyKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTartsshdaagpsAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPlnhssypypqnigriltgp
Low Complexity Region (SEG)
MEDTEVRVGDVADRTRgadvasasgaggggaRYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEqyvqtqgqcqtqSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANddsvepdvddddQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQalhselahshphassssYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Disordered region (IsUnstruct)
**********************************************************************************************TYSTTTVCSNTL******************************************************************************************************************NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKG*********************************************************************************ALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNP**SRSYYKCTNAGCPVRKHV******************************************************************************************YKIIQANAVTAYSGVVNGG***************************************
Disordered Region (DISOPRED)
******************************************************LSPSSFLESPVLLSNV*****************************************************************************************************************************************************YNWRKY*********FPRSYYKCTHPNCEVKKLF***HDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQ*****************************TLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH*************************************************************************************************************************GRIL***
Disordered Region (DISEMBL)
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNP*****************FASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDS***************************PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSI**********LTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH*****************GNGPCRIISEEGEAISLDLGVGISSATE************************SYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Disordered Region (DISPRO)
************************************SPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQ*********************************************************************************************************************************PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHD******************************************************************************************IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNH***************************************************************************************************************HSSYPYPQNIGRILTGP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	564	2.2.26 [Sep-21-2011]
Q93WV0	557	Probable WRKY transcripti	yes	no	0.920	0.931	0.572	1e-158
Q9FG77	687	Probable WRKY transcripti	no	no	0.682	0.560	0.426	8e-76
O65590	568	Probable WRKY transcripti	no	no	0.430	0.427	0.510	2e-65
Q9XI90	514	Probable WRKY transcripti	no	no	0.618	0.678	0.388	5e-65
Q8S8P5	519	Probable WRKY transcripti	no	no	0.404	0.439	0.554	9e-65
Q93WU7	423	Probable WRKY transcripti	no	no	0.356	0.475	0.564	1e-59
Q9C5T3	309	Probable WRKY transcripti	no	no	0.319	0.582	0.521	1e-57
O22921	393	Probable WRKY transcripti	no	no	0.367	0.526	0.471	6e-54
Q9SI37	487	WRKY transcription factor	no	no	0.489	0.566	0.396	2e-52
Q9ZUU0	429	WRKY transcription factor	no	no	0.363	0.477	0.446	5e-46

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 318/555 (57%), Positives = 383/555 (69%), Gaps = 36/555 (6%)

Query: 22  SASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF 81
           SA G GGGGARYKLMSPAKLPISRS  I IPPGLSP+SFLESPV +SN+K EPSPTTGS 
Sbjct: 27  SAGGNGGGGARYKLMSPAKLPISRSTDITIPPGLSPTSFLESPVFISNIKPEPSPTTGSL 86

Query: 82  FKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQ 141
           FKP+ VH S    +Y+      NT  E ++S FEFRP + SNMV A+L   RSE  V  Q
Sbjct: 87  FKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFEFRPPA-SNMVYAELGKIRSEPPVHFQ 145

Query: 142 GQCQTQSFASSPTIKGEMTVSSNELSL-LGPIQMATTGTIVPAEVDSDEPKQMGQPTAGI 200
           GQ    S + S     +   SS+ELS    P QM  T + +PA  D +E          I
Sbjct: 146 GQGHGSSHSPS--SISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEE---------SI 194

Query: 201 QASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQ 260
           Q S +D +G  PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQ
Sbjct: 195 QTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQ 254

Query: 261 ITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD--GSMYGQMSHAMETN 318
           IT+IIYKGTHDHPKPQ  RR S G  M+ QEER DK  S T RD  GS    +S+  E  
Sbjct: 255 ITDIIYKGTHDHPKPQPGRRNSGG--MAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQT 312

Query: 319 GTPDLSPV-ANDDSVEP--------DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVV 369
           G P++ P+ A+DD  E         + DDDD +SKRR+M+  + ++TP+VKPIREPRVVV
Sbjct: 313 GNPEVPPISASDDGGEAAASNRNKDEPDDDDPFSKRRRMEGAM-EITPLVKPIREPRVVV 371

Query: 370 QTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITT 429
           QTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCT  GCPVRKHVERASHDPKAVITT
Sbjct: 372 QTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTAHGCPVRKHVERASHDPKAVITT 430

Query: 430 YEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQ 489
           YEGKH+HDVPT+++SS+    P       R   +E + ISL+LGVGISS   N ++ + Q
Sbjct: 431 YEGKHDHDVPTSKSSSNHEIQP-------RFRPDETDTISLNLGVGISSDGPNHASNEHQ 483

Query: 490 ALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHS 549
             + +L  +  H +  +++ + A+ +++Y   +N GMNQYG R    E +  D   LN+S
Sbjct: 484 HQNQQLV-NQTHPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNS 542

Query: 550 SYPYPQNIGRILTGP 564
           SYPYP N+GR+ +GP
Sbjct: 543 SYPYPPNMGRVQSGP 557

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  285 bits (728), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 194/455 (42%), Positives = 243/455 (53%), Gaps = 70/455 (15%)

Query: 45  RSPCIMIP-PGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHASVGPRTYSTTTVC 102
           RSPC+ I  PGLSP++ LESPV LSN  A+PSPTTG F F P      V     S+    
Sbjct: 108 RSPCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFPFLP-----GVNGNALSSEKAK 162

Query: 103 SNTLNEGEASCFEFRPHSRSNM-VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTV 161
               ++  AS F F P SRS+           S  Y     +  +   A       E   
Sbjct: 163 DEFFDDIGAS-FSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIE 221

Query: 162 SSNELSLLGPIQMATTGTIVPAEVDSDEPKQ-MGQPTAGIQASHSDHKGGGPSMPSDDGY 220
           SSN   L G       G    ++V ++   + +       +    D   GG   P++DGY
Sbjct: 222 SSN---LYGIETDNQNGQNKTSDVTTNTSLETVDHQEEEEEQRRGDSMAGG--APAEDGY 276

Query: 221 NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRR 280
           NWRKYGQK VKGSE+PRSYYKCT+PNC+VKK  ERS +G ITEIIYKG H+H KP  +RR
Sbjct: 277 NWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPNRR 336

Query: 281 YS-----AGNMMSIQEERPDKVSSLTC--------------RDGSM---YGQMSHAMET- 317
                     +   Q++R    + ++C               +GS    YG  S +++  
Sbjct: 337 SGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSGSIQAQ 396

Query: 318 ------NGTPDLSPVANDDSVEPDVDDDDQ------------------------YSKRRK 347
                 +G P +  V    +   D D+DD+                         SKRRK
Sbjct: 397 TGGQYESGDP-VVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRK 455

Query: 348 MDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTN 407
           ++A  A+++   + IREPRVVVQT S+VDILDDGYRWRKYGQKVV+GNPNP RSYYKCT 
Sbjct: 456 LEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNP-RSYYKCTA 514

Query: 408 AGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 442
            GC VRKHVERASHD K+VITTYEGKHNHDVP AR
Sbjct: 515 PGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  250 bits (639), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/280 (51%), Positives = 172/280 (61%), Gaps = 37/280 (13%)

Query: 209 GGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI 264
           G G SM    P+DDGYNWRKYGQK VKGSE+PRSYYKCTHPNCE KK  ERS +G I EI
Sbjct: 166 GLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEI 225

Query: 265 IYKGTHDHPKPQLSRRYSAGNMMSIQEERPD--KVSSLTCRDGSM-----------YGQM 311
           IY G H H KP  +RR   G+  + Q+ + D  +       + ++           YG  
Sbjct: 226 IYTGDHIHSKPPPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSH 285

Query: 312 SHAMET-NGTPDLS-PVANDDSVEPDVDDDDQY-----------------SKRRKMDALV 352
           S +M+  NGT       A  D++  D ++DD+                  SKRRK++A  
Sbjct: 286 SGSMQVQNGTHQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESESKRRKLEAYA 345

Query: 353 ADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPV 412
            + +   +  REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNP RSYYKCT  GC V
Sbjct: 346 TETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP-RSYYKCTANGCTV 404

Query: 413 RKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPS 452
            KHVERAS D K+V+TTY GKH H VP AR SSH  AG S
Sbjct: 405 TKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSS 444

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  249 bits (635), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 171/440 (38%), Positives = 221/440 (50%), Gaps = 91/440 (20%)

Query: 24  SGAGGGGARYKLMSPAKLPISRS---PCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGS 80
           S +G    R+K   P  L IS+S       +PPGLSP+  L+SP  L             
Sbjct: 96  SSSGDVDPRFKQNRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLG------------ 143

Query: 81  FFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQT 140
            F P  V  S G            T  +  A        + +NM P    P  S      
Sbjct: 144 LFSP--VQGSYG-----------MTHQQALAQVTAQAVQANANMQPQTEYPPPS------ 184

Query: 141 QGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGI 200
               Q QSF+S                  G  Q+ T+  + PA+ ++ +           
Sbjct: 185 ----QVQSFSS------------------GQAQIPTSAPL-PAQRETSD----------- 210

Query: 201 QASHSDHKGGGP---SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 257
             +  +H+   P     P+DDGYNWRKYGQK VKGSEFPRSYYKCT+P C VKK  ERS 
Sbjct: 211 -VTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL 269

Query: 258 DGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYG-------- 309
           DGQ+TEIIYKG H+H  PQ ++R +  N  +I     +     +    S +         
Sbjct: 270 DGQVTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTK 329

Query: 310 --QMSHAMETNGTPDLSPVANDDSV---EPDVDDDDQYS---KRRKMDALVADVTPVV-- 359
             Q     +   T  LS  ++ + V   E DV + D+     KRR  +  +++  P    
Sbjct: 330 REQHEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASH 389

Query: 360 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERA 419
           + + EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP P RSYYKCT  GC VRKHVERA
Sbjct: 390 RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERA 448

Query: 420 SHDPKAVITTYEGKHNHDVP 439
           + DPKAV+TTYEGKHNHD+P
Sbjct: 449 ATDPKAVVTTYEGKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  248 bits (633), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 137/247 (55%), Positives = 160/247 (64%), Gaps = 19/247 (7%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ 276
           +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+H+HPKPQ
Sbjct: 184 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQ 243

Query: 277 LSRR--------YSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVAN 328
            +RR        +SA    S+   R    S     + S +   S  M+         V +
Sbjct: 244 STRRSSSSSSTFHSAVYNASLDHNR-QASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGD 302

Query: 329 DDS------VEPDVDD--DDQYSKRRKMD-ALVADVTPVVKPIREPRVVVQTLSEVDILD 379
           D+       V  D +D   +  +KR K D           K +REPR+VVQT S++DILD
Sbjct: 303 DEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILD 362

Query: 380 DGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVP 439
           DGYRWRKYGQKVV+GNPNP RSYYKCT  GCPVRKHVERASHD +AVITTYEGKHNHDVP
Sbjct: 363 DGYRWRKYGQKVVKGNPNP-RSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVP 421

Query: 440 TARTSSH 446
            AR S +
Sbjct: 422 AARGSGY 428

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  231 bits (588), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/225 (56%), Positives = 151/225 (67%), Gaps = 24/225 (10%)

Query: 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 274
           P+DDGYNWRKYGQK +KG E+PRSYYKCTH NC VKK  ERS DGQIT+IIYKG HDH +
Sbjct: 165 PADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHER 224

Query: 275 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEP 334
           PQ +RR   G                  RD +  G     ME++         +DD  + 
Sbjct: 225 PQ-NRRGGGG------------------RDSTEVGGAGQMMESSDDSGYRKDHDDDDDDD 265

Query: 335 DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRG 394
           + D+D   SK R++D     V+   + + EP+++VQT SEVD+LDDGYRWRKYGQKVV+G
Sbjct: 266 EDDEDLPASKIRRIDG----VSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKG 321

Query: 395 NPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVP 439
           NP+P RSYYKCT   C VRKHVERAS D KAVITTYEGKHNHDVP
Sbjct: 322 NPHP-RSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/228 (52%), Positives = 144/228 (63%), Gaps = 48/228 (21%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 274
           SDDGYNWRKYGQK VKGSE PRSY+KCT+PNC  KK  E S   GQ+ EI+YKG+H+HPK
Sbjct: 116 SDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPK 175

Query: 275 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEP 334
           PQ ++R S+  + +                        H   +NG               
Sbjct: 176 PQSTKRSSSTAIAA------------------------HQNSSNGDGK------------ 199

Query: 335 DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRG 394
           D+ +D+  +KR K +          + ++EPRVVVQT S++DILDDGYRWRKYGQKVV+G
Sbjct: 200 DIGEDETEAKRWKRE----------ENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKG 249

Query: 395 NPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 442
           NPNP RSYYKCT  GC VRKHVERA  DPK+VITTYEGKH H +PT R
Sbjct: 250 NPNP-RSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  212 bits (539), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 115/244 (47%), Positives = 150/244 (61%), Gaps = 37/244 (15%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275
           S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+HPKP
Sbjct: 165 SNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKP 224

Query: 276 QLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPD 335
           + ++R S  ++       P  V+     + +      H    N            S+  D
Sbjct: 225 EFTKRPSQSSL-------PSSVNGRRLFNPASVVSEPHDQSENS-----------SISFD 266

Query: 336 VDDDDQYS-----------------KRRKMDALVADVT-PVVKPIREPRVVVQTLSEVDI 377
             D +Q S                 KR K +     ++  V K ++EPRVVVQT+S++D+
Sbjct: 267 YSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDV 326

Query: 378 LDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 437
           L DG+RWRKYGQKVV+GN NP RSYYKCT  GC V+K VER++ D +AV+TTYEG+HNHD
Sbjct: 327 LIDGFRWRKYGQKVVKGNTNP-RSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHD 385

Query: 438 VPTA 441
           +PTA
Sbjct: 386 IPTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/325 (39%), Positives = 179/325 (55%), Gaps = 49/325 (15%)

Query: 165 ELSLLGPIQMATTGTIVPAEVDSDEPKQMGQP----TAGIQASHSDHKGGGPSMPS---D 217
           EL  L P  +A+      +EVD   P     P    ++G  +  S  +G  P +     +
Sbjct: 57  ELEKLVPHTVASQ-----SEVDVASPVSEKAPKVSESSGALSLQSGSEGNSPFIREKVME 111

Query: 218 DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP-- 275
           DGYNWRKYGQK VKG+EF RSYY+CTHPNC+ KK  ERS  GQ+ + +Y G HDHPKP  
Sbjct: 112 DGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLA 171

Query: 276 -----QLSRRYSAGNMMSIQEERPDKVSSL--TC-----------RDGSMYGQMSHAM-- 315
                   +R      +S  E+R D VS +   C             GS    +      
Sbjct: 172 GAVPINQDKRSDVFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPP 231

Query: 316 ETNGTPDLSPVANDDSVEPDV-------------DDDDQYSKRRKMDALVADVTPVVKPI 362
           + +G   +S +   D V+ D+             D +   +KRRK    + +++PV +  
Sbjct: 232 KIHGGLHVSVIPPADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNI-ELSPVERST 290

Query: 363 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHD 422
            + R+VV T +  DI++DGYRWRKYGQK V+G+P P RSYY+C++ GCPV+KHVER+SHD
Sbjct: 291 NDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSYYRCSSPGCPVKKHVERSSHD 349

Query: 423 PKAVITTYEGKHNHDVPTARTSSHD 447
            K +ITTYEGKH+HD+P  R  +H+
Sbjct: 350 TKLLITTYEGKHDHDMPPGRVVTHN 374

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 144/262 (54%), Gaps = 57/262 (21%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275
           S DGYNWRKYGQK VKGSE PRSYYKCTHP C VKK  ERS +GQ++EI+Y+G H+H KP
Sbjct: 164 SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKP 223

Query: 276 Q--LSRRYSAGNMMSIQEERPDKVSSLTCRDGSM------------YGQMSHAMETNGTP 321
              L RR S+      Q+  P  ++S    +GSM            +   S+    N T 
Sbjct: 224 SCPLPRRASSSISSGFQKP-PKSIAS----EGSMGQDPNNNLYSPLWNNQSNDSTQNRTE 278

Query: 322 DLS-------------------PVANDDSV------EPDVDDDDQYSKRRKMDALVADVT 356
            +S                   P  +D         E ++DD  + SKRRK +   ++  
Sbjct: 279 KMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSR-SKRRKNEKQSSEAG 337

Query: 357 PVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHV 416
                      V Q   E D L+DG+RWRKYGQKVV GN  P RSYY+CT+A C  RKHV
Sbjct: 338 -----------VSQGSVESDSLEDGFRWRKYGQKVVGGNAYP-RSYYRCTSANCRARKHV 385

Query: 417 ERASHDPKAVITTYEGKHNHDV 438
           ERAS DP+A ITTYEGKHNH +
Sbjct: 386 ERASDDPRAFITTYEGKHNHHL 407

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
255576310	562	WRKY transcription factor, putative [Ric	0.962	0.966	0.736	0.0
224056431	557	predicted protein [Populus trichocarpa]	0.964	0.976	0.698	0.0
224114435	539	predicted protein [Populus trichocarpa]	0.945	0.988	0.696	0.0
359494165	580	PREDICTED: probable WRKY transcription f	0.962	0.936	0.673	0.0
297737535	552	unnamed protein product [Vitis vinifera]	0.936	0.956	0.665	0.0
356501612	588	PREDICTED: probable WRKY transcription f	0.946	0.908	0.645	0.0
356569659	577	PREDICTED: probable WRKY transcription f	0.932	0.911	0.644	0.0
356524334	577	PREDICTED: probable WRKY transcription f	0.932	0.911	0.628	0.0
357459955	595	WRKY transcription factor [Medicago trun	0.930	0.882	0.627	0.0
357494813	545	WRKY transcription factor [Medicago trun	0.888	0.919	0.594	1e-170

>gi|255576310|ref|XP_002529048.1| WRKY transcription factor, putative [Ricinus communis] gi|223531528|gb|EEF33359.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/551 (73%), Positives = 448/551 (81%), Gaps = 8/551 (1%)

Query: 19  DVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTT 78
           D  S S A  GGARYKLMSPAKLPISRSPCI IPPGLSP+SFLESPVLLSNVKAEPSPTT
Sbjct: 15  DSDSGSAASVGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNVKAEPSPTT 74

Query: 79  GSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYV 138
           GSF KP   H S+G   YS T V SN   E  +SCFEFRPH RSN+VPAD++ + +EQ V
Sbjct: 75  GSFAKPPTGHGSLGSNPYSATAVPSNAFGERTSSCFEFRPHPRSNLVPADVHHRITEQSV 134

Query: 139 QTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTA 198
           Q QG CQ QS ASSP +K EM VSSNE SL  P  + ++GT  P EV+SDE  Q+G    
Sbjct: 135 QVQGHCQNQSLASSPRVKSEMAVSSNEFSLSAP--LPSSGTSAPGEVESDELNQIGVSNN 192

Query: 199 GIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 257
           G+QAS +DHKGG G SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH
Sbjct: 193 GLQASQTDHKGGSGISMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 252

Query: 258 DGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSM---YGQMSHA 314
           DGQITEIIYKGTHDHPKPQ SRRYS+G ++S+QE+R DK+ SL  RD      YGQ+SH 
Sbjct: 253 DGQITEIIYKGTHDHPKPQPSRRYSSGAVLSMQEDRSDKILSLPGRDDKTSIAYGQVSHT 312

Query: 315 METNGTPDLSPV-ANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLS 373
           ++ NGTP+LSPV ANDDS+E   DDDD +SKRRKMD    +VTPVVKPIREPRVVVQTLS
Sbjct: 313 IDPNGTPELSPVTANDDSIEGAEDDDDPFSKRRKMDTGGFEVTPVVKPIREPRVVVQTLS 372

Query: 374 EVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGK 433
           EVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGK
Sbjct: 373 EVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGK 431

Query: 434 HNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHS 493
           HNHDVP ARTSSHD  GP+A NG  RI SEE E ISLDLGVGISS T+NRSN+Q QALHS
Sbjct: 432 HNHDVPMARTSSHDTTGPTAVNGASRIRSEESETISLDLGVGISSTTDNRSNDQQQALHS 491

Query: 494 ELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPY 553
           EL+ S   AS SS++I+    +  Y GV+NGGMNQYGSR NP EGR V+ PPL+HSSYPY
Sbjct: 492 ELSQSQNQASGSSFRIVPRATIAPYYGVLNGGMNQYGSRQNPNEGRSVEIPPLSHSSYPY 551

Query: 554 PQNIGRILTGP 564
           PQN+GR+LTGP
Sbjct: 552 PQNVGRLLTGP 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056431|ref|XP_002298853.1| predicted protein [Populus trichocarpa] gi|222846111|gb|EEE83658.1| predicted protein [Populus trichocarpa]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/561 (69%), Positives = 442/561 (78%), Gaps = 17/561 (3%)

Query: 8   VGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLL 67
           V D  D TR         +GGGGARYKLMSPAKLPISRS CI IPPGLSP+SFLESPVLL
Sbjct: 10  VSDCGDPTRPE-------SGGGGARYKLMSPAKLPISRSACITIPPGLSPTSFLESPVLL 62

Query: 68  SNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPA 127
           SNVKAEPSPTTG+F KP+    S+    YS TTV S    E ++  FEFRP++RSNMV A
Sbjct: 63  SNVKAEPSPTTGTFTKPRTALGSLSSTPYSATTVSSTACGERKSDYFEFRPYARSNMVSA 122

Query: 128 DLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDS 187
           D+N QRS Q  Q Q QC +QSFAS P +KGEM VS+NELSL   + M T+    PAEVDS
Sbjct: 123 DINHQRSTQCAQVQSQCHSQSFASPPLVKGEMEVSTNELSLSASLHMVTSVASAPAEVDS 182

Query: 188 DEPKQMGQPTAGIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPN 246
           DE  Q G  ++G+QAS SDH+ G  PSM SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPN
Sbjct: 183 DELNQTGLSSSGLQASQSDHRAGTAPSMSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPN 242

Query: 247 CEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCR-DG 305
           CEVKKLFERSHDGQITEIIYKGTHDHPKPQ SRRY++G+++S+QE+R DK SSL  + D 
Sbjct: 243 CEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYASGSVLSMQEDRFDKSSSLPNQGDK 302

Query: 306 S--MYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIR 363
           S   YGQ+ HA+E NG  +LS  ANDD+ E   DDDD +SKRR++DA   DVTPVVKPIR
Sbjct: 303 SPGAYGQVPHAIEPNGALELSTGANDDTGEGAEDDDDPFSKRRRLDAGGFDVTPVVKPIR 362

Query: 364 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDP 423
           EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDP
Sbjct: 363 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDP 421

Query: 424 KAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENR 483
           KAVITTYEGKHNHDVPTART+SHD AGPSA NGP RI  +E E ISLDLGVGISS TEN+
Sbjct: 422 KAVITTYEGKHNHDVPTARTNSHDMAGPSAVNGPSRIRPDENETISLDLGVGISSTTENQ 481

Query: 484 SNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDF 543
           S++Q QALH+EL      AS SS++++ A  +TAY GV+NGGMNQYGSR  P E R ++ 
Sbjct: 482 SSDQQQALHAELIKHENQASGSSFRVVHATPITAYYGVLNGGMNQYGSRQIPGESRSIEI 541

Query: 544 PPLNHSSYPYPQNIGRILTGP 564
           PP     YPYPQN+GR+LTGP
Sbjct: 542 PP-----YPYPQNMGRLLTGP 557

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114435|ref|XP_002316759.1| predicted protein [Populus trichocarpa] gi|222859824|gb|EEE97371.1| predicted protein [Populus trichocarpa]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/543 (69%), Positives = 437/543 (80%), Gaps = 10/543 (1%)

Query: 28  GGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAV 87
           GGGARYKLMSPAKLPISRS C MI PGLSP+SFLESPVLLSNVKAEPSPTTG+F  PQ V
Sbjct: 1   GGGARYKLMSPAKLPISRSACTMISPGLSPTSFLESPVLLSNVKAEPSPTTGTFTNPQTV 60

Query: 88  HASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQ 147
             S+   +Y  TTV S    E +++CFEFRPH+RS+MV AD+N QRS Q V+ Q QCQ+Q
Sbjct: 61  LGSLSSTSYPATTVYSTNFGERKSNCFEFRPHARSDMVSADMNHQRSAQCVKVQSQCQSQ 120

Query: 148 SFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDH 207
           SF SSP++KGEM V +NEL+L  P+ M T+G+ VPAEVDSDE  QMG  ++G++AS S  
Sbjct: 121 SFPSSPSVKGEMAVCTNELTLSTPLHMVTSGSSVPAEVDSDELNQMGLSSSGLRASQS-- 178

Query: 208 KGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 267
            G  P++ SDDGY WRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFE SHDGQITEIIYK
Sbjct: 179 -GSAPTVSSDDGYKWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFECSHDGQITEIIYK 237

Query: 268 GTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGS---MYGQMSHAMETNGTPDLS 324
           GTHDHPKPQ SRRY++G+ + + EER DK SSL  +D      YGQ+SHA+E +G P+LS
Sbjct: 238 GTHDHPKPQPSRRYASGSGLFMLEERFDKFSSLPSQDDKSPGAYGQVSHAIEPDGAPELS 297

Query: 325 P-VANDDSVEPDVDDDDQYSKR-RKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGY 382
           P   NDD+ E   DD D +SKR R++DA   DVTPV+KPIREPRVVVQT SEVDILDDGY
Sbjct: 298 PGTTNDDTGEGAEDDKDPFSKRSRRLDAGGFDVTPVIKPIREPRVVVQTQSEVDILDDGY 357

Query: 383 RWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 442
           RWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR
Sbjct: 358 RWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 416

Query: 443 TSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSELAHSHPHA 502
           T+SHD AGPSA NG  R   ++ E ISLDLGVGISS +EN S++Q QALH+EL      +
Sbjct: 417 TNSHDTAGPSAVNGTSRTRPDKNETISLDLGVGISSTSENLSSDQQQALHAELVRFENQS 476

Query: 503 SS-SSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRIL 561
           SS SS++I+ A+ + AY GV+NGGMNQYGSR  P+EGR ++ PPLN SSYPYPQN+G +L
Sbjct: 477 SSGSSFRIVHASPIAAYYGVLNGGMNQYGSRQIPSEGRSIEIPPLNRSSYPYPQNVGSLL 536

Query: 562 TGP 564
           TGP
Sbjct: 537 TGP 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494165|ref|XP_002274204.2| PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/561 (67%), Positives = 433/561 (77%), Gaps = 18/561 (3%)

Query: 18  ADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPT 77
           ++VAS S    GGARY+LMSPAKLPISRSPC+ IP GLSPSSFL+SPVLLSN+K EPSPT
Sbjct: 24  SNVASGSD---GGARYRLMSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPT 80

Query: 78  TGSFFKPQAVHASVGPRTYSTTTVCSNT--LNEGEASCFEFRPHSRSNMVPADLNPQRSE 135
           TGSF KPQ +H SVG   +S+T+ CSN+   +E ++  FEF+PH+ SN V ADLN Q+ +
Sbjct: 81  TGSFAKPQMIHGSVGSSMFSSTSNCSNSNTFDERKSGSFEFKPHTVSNSVSADLNHQQVK 140

Query: 136 QYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQ 195
            ++  Q Q    S   SPT+K EM   SNELSL  P  M T+    PAEVDSDE  Q G 
Sbjct: 141 PFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGH 200

Query: 196 PTAGIQASHSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 251
           P  G+QAS SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK
Sbjct: 201 PNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 260

Query: 252 LFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDG---SMY 308
           LFER+HDGQI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL  RD    S+Y
Sbjct: 261 LFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIY 320

Query: 309 GQMSHAMETNGTPDLSPVA-NDDSVE----PDVDDDDQYSKRRKMDALVADVTPVVKPIR 363
           GQM+H ++ NGTP+LSPVA NDD VE     +VD+DD  SKRRKM+    DVTPVVKPIR
Sbjct: 321 GQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIR 380

Query: 364 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDP 423
           EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDP
Sbjct: 381 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDP 439

Query: 424 KAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENR 483
           KAVITTYEGKHNHDVPTART+SHDAAG  A NG   I SEE + ISLDLGVGI+SA+ENR
Sbjct: 440 KAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLGVGINSASENR 499

Query: 484 SNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDF 543
            N Q Q LH+EL  +    ++S+++ +QA  V+ Y GV+N GM+ YG R N  E R  + 
Sbjct: 500 PNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRENLGESRSFET 559

Query: 544 PPLNHSSYPYPQNIGRILTGP 564
           PPLNHSS P PQN+GRIL GP
Sbjct: 560 PPLNHSSNPCPQNMGRILMGP 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737535|emb|CBI26736.3| unnamed protein product [Vitis vinifera]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/553 (66%), Positives = 420/553 (75%), Gaps = 25/553 (4%)

Query: 36  MSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRT 95
           MSPAKLPISRSPC+ IP GLSPSSFL+SPVLLSN+K EPSPTTGSF KPQ +H SVG   
Sbjct: 1   MSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPTTGSFAKPQMIHGSVGSSM 60

Query: 96  YSTTTVCSNT--LNEGEASCFEFRPHSRSNM----------VPADLNPQRSEQYVQTQGQ 143
           +S+T+ CSN+   +E ++  FEF+PH+ SN           V ADLN Q+ + ++  Q Q
Sbjct: 61  FSSTSNCSNSNTFDERKSGSFEFKPHTVSNSASGLFLVGSPVSADLNHQQVKPFIPVQAQ 120

Query: 144 CQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQAS 203
               S   SPT+K EM   SNELSL  P  M T+    PAEVDSDE  Q G P  G+QAS
Sbjct: 121 HPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGHPNNGVQAS 180

Query: 204 HSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDG 259
            SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER+HDG
Sbjct: 181 QSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAHDG 240

Query: 260 QITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDG---SMYGQMSHAME 316
           QI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL  RD    S+YGQM+H ++
Sbjct: 241 QIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIYGQMAHNID 300

Query: 317 TNGTPDLSPVA-NDDSVE----PDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQT 371
            NGTP+LSPVA NDD VE     +VD+DD  SKRRKM+    DVTPVVKPIREPRVVVQT
Sbjct: 301 PNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIREPRVVVQT 360

Query: 372 LSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYE 431
           LSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDPKAVITTYE
Sbjct: 361 LSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDPKAVITTYE 419

Query: 432 GKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQAL 491
           GKHNHDVPTART+SHDAAG  A NG   I SEE + ISLDLGVGI+SA+ENR N Q Q L
Sbjct: 420 GKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLGVGINSASENRPNVQHQTL 479

Query: 492 HSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSY 551
           H+EL  +    ++S+++ +QA  V+ Y GV+N GM+ YG R N  E R  + PPLNHSS 
Sbjct: 480 HAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRENLGESRSFETPPLNHSSN 539

Query: 552 PYPQNIGRILTGP 564
           P PQN+GRIL GP
Sbjct: 540 PCPQNMGRILMGP 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501612|ref|XP_003519618.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/567 (64%), Positives = 418/567 (73%), Gaps = 33/567 (5%)

Query: 24  SGAG-GGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFF 82
           SG+G    ARYKLMSPAKLPISRSPCI IPPGLSP+SFLESPVLLSN+K E SPTTGS  
Sbjct: 29  SGSGQNSTARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEASPTTGSLR 88

Query: 83  K-PQAVH---ASVGPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQ 136
           K  Q VH   AS    T+  TT C  +NT++  ++S FEF+P +RSN VPAD N   S+Q
Sbjct: 89  KLQQTVHGSMASAASATFPVTTACFNTNTVDARKSSFFEFKPLNRSNKVPADFNNHVSKQ 148

Query: 137 YVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQP 196
             Q +G  + QSFASSP ++ E+TV SNELSL  P+QM ++    P +VD DE    G  
Sbjct: 149 STQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVDVDLDEINHKGNT 208

Query: 197 TAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKL 252
             G+QASH + +G G S+     SDDGYNWRKYGQK VKGSEFPRSYYKCTHPNCEVKKL
Sbjct: 209 ATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKL 268

Query: 253 FERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD---GSMYG 309
           FERSHDGQITEI+YKGTHDHPKPQ S RYS G +M IQ ER DK +SL  RD    +MYG
Sbjct: 269 FERSHDGQITEIVYKGTHDHPKPQSSCRYSTGTVMYIQGERSDK-ASLAGRDDKASTMYG 327

Query: 310 QMSHAMETNGTPDLSPVA-NDDSVE----------PDVDDDDQYSKRRKMDALVADVTPV 358
           Q+SHA E N TP+ SPVA NDD +E           +VDDDD +SKRRKM+    D+TPV
Sbjct: 328 QVSHAAEPNSTPESSPVATNDDGLEGAGFVSNRNNEEVDDDDPFSKRRKMELGNVDITPV 387

Query: 359 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVER 418
           VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVER
Sbjct: 388 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVER 446

Query: 419 ASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSA-GNGPCRIISEEGEAISLDLGVGIS 477
           ASHDPKAVITTYEGKHNHDVP AR SSHD A P+A   G  RI  EE + ISLDLG+GIS
Sbjct: 447 ASHDPKAVITTYEGKHNHDVPAARNSSHDMAVPAATAGGQTRIKLEESDTISLDLGMGIS 506

Query: 478 SATENRSNEQPQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTE 537
           SA E+RSN Q + LHSEL  +  HAS+S++K +   +   Y GV+N   N YGSR N ++
Sbjct: 507 SAAEHRSNGQGKMLHSELGETQTHASNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSD 566

Query: 538 GRGVDFPPLNHSSYPYPQNIGRILTGP 564
           G     P LNHSSYP PQ++GRIL GP
Sbjct: 567 G-----PSLNHSSYPCPQSMGRILLGP 588

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569659|ref|XP_003553015.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/557 (64%), Positives = 407/557 (73%), Gaps = 31/557 (5%)

Query: 32  RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHAS 90
           RYKLMSPAKLPISRSPC+ IPPGLSP+SFLESPVLLSN+K EPSPTTGS     Q  H S
Sbjct: 28  RYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAHGS 87

Query: 91  V---GPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
           V      T+  TTVC  +NT+++ + S FEF+PH+RSNMVPAD +   SE+  Q  GQ +
Sbjct: 88  VTSAASSTFPVTTVCFNTNTVDDRKPSFFEFKPHNRSNMVPADFDNHASEKSTQIDGQGK 147

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
            Q+F SSP +K E    SNELSL  P+QM  +G     E D DE       T G+QAS  
Sbjct: 148 AQAFDSSPLVKNESASPSNELSLSSPVQMDCSGGSARVEGDLDELNPRSNITTGLQASQV 207

Query: 206 DHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 261
           D++G G S+     SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI
Sbjct: 208 DNRGSGLSVAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 267

Query: 262 TEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGS---MYGQMSHAMETN 318
           TEIIYKGTHDHPKPQ +RRYSAG +MS+QEER DKV SLT RDG+   M GQ SH  E +
Sbjct: 268 TEIIYKGTHDHPKPQPNRRYSAGTIMSVQEERSDKV-SLTSRDGNGSYMCGQGSHLAEPD 326

Query: 319 GTPDLSPVANDDS-----------VEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRV 367
             P+LSPVA +D               +VDDDD +SKRRKMD  +AD+TPVVKPIREPRV
Sbjct: 327 SQPELSPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKRRKMDLGIADITPVVKPIREPRV 386

Query: 368 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVI 427
           VVQTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTN GCPVRKHVERASHDPKAVI
Sbjct: 387 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNTGCPVRKHVERASHDPKAVI 445

Query: 428 TTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQ 487
           TTYEGKHNHDVPTAR S HD AGP++ +G  RI  EE + ISLDLG+GIS A EN  N Q
Sbjct: 446 TTYEGKHNHDVPTARNSCHDMAGPASASGQTRIRPEESDTISLDLGMGISPAAENTPNSQ 505

Query: 488 PQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLN 547
            + + SE   S  H S+S++  +    V  Y GV+N   N YGSR NP++G     P LN
Sbjct: 506 GRMMLSEFGDSQTHTSNSNFNFVHTTTVPGYFGVLNNNSNPYGSRENPSDG-----PSLN 560

Query: 548 HSSYPYPQNIGRILTGP 564
           HS+YP PQNIGRIL GP
Sbjct: 561 HSAYPCPQNIGRILMGP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524334|ref|XP_003530784.1| PREDICTED: probable WRKY transcription factor 20 [Glycine max]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/557 (62%), Positives = 403/557 (72%), Gaps = 31/557 (5%)

Query: 32  RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHAS 90
           RYKL+SPAKLPISRSPC+ I PGLSP+SFLESPVLLSN+K EPSPTTGS     Q  + S
Sbjct: 28  RYKLLSPAKLPISRSPCVTISPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAYGS 87

Query: 91  V---GPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
           +      T+  TTVC  SNT++E + S FEF+PHS SNMVPAD +   SE+  Q   Q +
Sbjct: 88  MTSAASATFPVTTVCFNSNTVDERKPSFFEFKPHSGSNMVPADFDNHASEKSTQIDSQGK 147

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
            Q+F SS  +K E    SNELSL  P+QM  +G     E D DE       T G+QAS  
Sbjct: 148 AQAFDSSALVKNESASPSNELSLSSPVQMDCSGASARVEGDLDELNPRSNITTGLQASQV 207

Query: 206 DHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 261
           D++G G ++     SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI
Sbjct: 208 DNRGSGLTVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 267

Query: 262 TEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD---GSMYGQMSHAMETN 318
           TEIIYKGTHDHPKPQ +RRYSAG +MS+QE+R DK +SLT RD    +M GQ SH  E +
Sbjct: 268 TEIIYKGTHDHPKPQPNRRYSAGTIMSVQEDRSDK-ASLTSRDDKGSNMCGQGSHLAEPD 326

Query: 319 GTPDLSPVANDDS-----------VEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRV 367
           G P+L PVA +D               +VDDDD +SKRRKMD  +AD+TPVVKPIREPRV
Sbjct: 327 GKPELLPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKRRKMDVGIADITPVVKPIREPRV 386

Query: 368 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVI 427
           VVQTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTN GCPVRKHVERASHDPKAVI
Sbjct: 387 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNTGCPVRKHVERASHDPKAVI 445

Query: 428 TTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQ 487
           TTYEGKHNHDVPTAR S HD AGP++ +G  R+  EE + ISLDLG+GIS A EN SN Q
Sbjct: 446 TTYEGKHNHDVPTARNSCHDMAGPASASGQTRVRPEESDTISLDLGMGISPAAENTSNSQ 505

Query: 488 PQALHSELAHSHPHASSSSYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLN 547
            + + SE   S  H S+S++K +       Y GV+N   N YGS+ NP++G     P LN
Sbjct: 506 GRMMLSEFGDSQIHTSNSNFKFVHTTTAPGYFGVLNNNSNPYGSKENPSDG-----PSLN 560

Query: 548 HSSYPYPQNIGRILTGP 564
           HS+YP PQNIGRIL GP
Sbjct: 561 HSAYPCPQNIGRILMGP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459955|ref|XP_003600259.1| WRKY transcription factor [Medicago truncatula] gi|355489307|gb|AES70510.1| WRKY transcription factor [Medicago truncatula]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/561 (62%), Positives = 405/561 (72%), Gaps = 36/561 (6%)

Query: 30  GARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFK-PQAVH 88
           GARYKLMSPAKLPISRSP + IPPGLSP+SFLESPVLLSN+K EPSPTTGS  +  Q VH
Sbjct: 45  GARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTVH 104

Query: 89  ASVGPRT---YSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQ 143
             V   T   +  T+ C  SN++++G++S FEF+PHSRSNMVPAD      EQ  Q  GQ
Sbjct: 105 GFVTSSTSAAFPVTSACFNSNSVDDGKSSFFEFKPHSRSNMVPADFYNHACEQSTQIDGQ 164

Query: 144 CQTQSFASSPTIKGEMTVSSNELSLLG-PIQMATTGTIVPAEVDSDEPKQMGQPTAGIQA 202
              +SF SS  +K E  V S+E+SL   P+QM ++G     EVD DE    G    G+Q 
Sbjct: 165 GNVKSFVSSALVKSETAVPSDEISLSSSPVQMISSGASAHVEVDLDESNPSGSKATGLQV 224

Query: 203 SHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHD 258
           S  D +G G S+     SDDGYNWRKYGQK VKG EFPRSYYKCTHPNCEVKKLFERSHD
Sbjct: 225 SQVDGRGNGLSVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHD 284

Query: 259 GQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDG---SMYGQMSHAM 315
           GQITEI+YKGTHDHPKPQ SRR+S GNMMS+QEER D+ +SLT RD    + YGQMSHA 
Sbjct: 285 GQITEIVYKGTHDHPKPQPSRRFSGGNMMSVQEERSDR-ASLTSRDDKDFNNYGQMSHAA 343

Query: 316 ETNGTPDLSPV-ANDDSVE----------PDVDDDDQYSKRRKMDALVADVTPVVKPIRE 364
           E + TP+LSP+ AND S E           +VD+DD +SKRRKMD    D+TPVVKPIRE
Sbjct: 344 ERDSTPELSPIAANDGSPEGAGFLSNQNNDEVDEDDPFSKRRKMD---LDITPVVKPIRE 400

Query: 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPK 424
           PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDPK
Sbjct: 401 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDPK 459

Query: 425 AVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRS 484
           AVITTYEGKHNHDVPTAR +SHD AGPSA  G  RI  EE + ISLDLG+G+S   ENR 
Sbjct: 460 AVITTYEGKHNHDVPTARHNSHDMAGPSAAGGQTRIRHEESDTISLDLGMGLSPTAENRP 519

Query: 485 NEQPQALHSELAHSHPHASSSSYKIIQANA-VTAYSGVVNGGMNQYGSRGNPTEGRGVDF 543
           N   + + +E   S  H  +SS+K + ++     Y GV+N   N YGSR NP+     D 
Sbjct: 520 NSLGRMMRNEYGDSQTHNGNSSFKFVHSSTPPPVYFGVLNNSANPYGSRENPS-----DS 574

Query: 544 PPLNHSSYPYPQNIGRILTGP 564
             LN S+YP PQN+GRI+ GP
Sbjct: 575 SSLNRSAYPCPQNMGRIIMGP 595

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494813|ref|XP_003617695.1| WRKY transcription factor [Medicago truncatula] gi|355519030|gb|AET00654.1| WRKY transcription factor [Medicago truncatula]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 328/552 (59%), Positives = 381/552 (69%), Gaps = 51/552 (9%)

Query: 31  ARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHAS 90
           ARYKLMSPAKLPISRSPCI IP G SP+S LESPVLLSN+K EPSPTTGS    QA++ S
Sbjct: 27  ARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLL--QALNCS 84

Query: 91  VGPRTYSTTTVCSNT--LNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQS 148
           +   T+  T+ C NT  +N  ++S FEF+P  R NMVPAD N   SE+  Q +G    QS
Sbjct: 85  MASATFPVTSACFNTSTVNGRKSSFFEFKPQDR-NMVPADFNNHVSEKSTQMEGSGNGQS 143

Query: 149 FASSPTIKGEMTVSSNELSLLG-PIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDH 207
           F SSP  + E+   SNELSL   P+ M ++G   P  V+SDEP   G    G Q+S    
Sbjct: 144 FRSSPLNENEIEDQSNELSLSSSPVHMVSSGASAPVNVNSDEPNHKGSTANGPQSS---- 199

Query: 208 KGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 267
                    +DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK
Sbjct: 200 ---------NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 250

Query: 268 GTHDHPKPQLSRRYSAGNMMSIQEERPD-KVSSLTCRDGSMYGQMSHAMETNGTPDLSPV 326
           GTHDHPKPQ S RYSAG++MS Q ER D + SSL  RD           + + +P+ S V
Sbjct: 251 GTHDHPKPQPSNRYSAGSVMSTQGERSDNRASSLAVRDD----------KASNSPEQSVV 300

Query: 327 ANDDSVEPD------------VDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSE 374
           A +D + P+            VDDDD +SK+RKM+   AD+ PVVKPIREPRVVVQT+SE
Sbjct: 301 ATND-LSPEGAGFVSTRTNDGVDDDDPFSKQRKMELGNADIIPVVKPIREPRVVVQTMSE 359

Query: 375 VDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKH 434
           +DILDDGYRWRKYGQKVVRGNPNP RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKH
Sbjct: 360 IDILDDGYRWRKYGQKVVRGNPNP-RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKH 418

Query: 435 NHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQALHSE 494
           NHDVP AR+SSHD AG +      RI  EE + ISLDLG+GISS   NRSN Q + L SE
Sbjct: 419 NHDVPAARSSSHDMAGHATSFRQTRIKLEENDTISLDLGMGISSTAGNRSNGQGKILLSE 478

Query: 495 LAH-SHPHASSSSYKIIQ-ANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYP 552
             + SH H S+S++K +    +   Y GV+N G N +GSR N  +G       LNHS+ P
Sbjct: 479 FGNSSHTHTSNSNFKFVHNTTSAPVYYGVLNNGSNPFGSRENRNDGSS-----LNHSANP 533

Query: 553 YPQNIGRILTGP 564
             Q +GRIL GP
Sbjct: 534 CSQTMGRILMGP 545

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.902	0.913	0.544	5.5e-141
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.198	0.163	0.754	2.9e-81
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.186	0.204	0.666	3.7e-73
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.141	0.258	0.790	8.6e-72
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.193	0.191	0.681	3.1e-71
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.452	0.497	0.528	1.1e-70
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.418	0.454	0.525	1.3e-61
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.398	0.572	0.491	3.8e-60
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.182	0.211	0.552	5e-52
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.157	0.207	0.577	1.5e-45

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 297/545 (54%), Positives = 356/545 (65%)

Query:    32 RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASV 91
             RYKLMSPAKLPISRS  I IPPGLSP+SFLESPV +SN+K EPSPTTGS FKP+ VH S 
Sbjct:    37 RYKLMSPAKLPISRSTDITIPPGLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHISA 96

Query:    92 GPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEXXXXXXXXXXXXSFAS 151
                +Y+      NT  E ++S FEFRP + SNMV A+L   RSE            S   
Sbjct:    97 SSSSYTGRGFHQNTFTEQKSSEFEFRPPA-SNMVYAELGKIRSEPPVHFQGQGHGSSH-- 153

Query:   152 SPTIKGEMTVSSNELSL-LGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGG 210
             SP+   +   SS+ELS    P QM  T + +PA  D +E          IQ S +D +G 
Sbjct:   154 SPSSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEE---------SIQTSQNDSRGS 204

Query:   211 GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTH 270
              PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIT+IIYKGTH
Sbjct:   205 TPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTH 264

Query:   271 DHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD--GSMYGQMSHAMETNGTPDLSPVAN 328
             DHPKPQ  RR S G  M+ QEER DK  S T RD  GS    +S+  E  G P++ P++ 
Sbjct:   265 DHPKPQPGRRNSGG--MAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISA 322

Query:   329 XXXXXXXXXXXXQ---------YSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILD 379
                                   +SKRR+M+  + ++TP+VKPIREPRVVVQTLSEVDILD
Sbjct:   323 SDDGGEAAASNRNKDEPDDDDPFSKRRRMEGAM-EITPLVKPIREPRVVVQTLSEVDILD 381

Query:   380 DGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVP 439
             DGYRWRKYGQKVVRGNPNP RSYYKCT  GCPVRKHVERASHDPKAVITTYEGKH+HDVP
Sbjct:   382 DGYRWRKYGQKVVRGNPNP-RSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVP 440

Query:   440 TARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPQXXXXXXXXXX 499
             T+++SS+    P       R   +E + ISL+LGVGISS   N ++ + Q          
Sbjct:   441 TSKSSSNHEIQP-------RFRPDETDTISLNLGVGISSDGPNHASNEHQHQNQQLVNQT 493

Query:   500 XXXXXXXYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGR 559
                    ++ + A+ +++Y   +N GMNQYG R    E +  D   LN+SSYPYP N+GR
Sbjct:   494 HPNGVN-FRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNSSYPYPPNMGR 552

Query:   560 ILTGP 564
             + +GP
Sbjct:   553 VQSGP 557

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 2.9e-81, Sum P(2) = 2.9e-81
 Identities = 86/114 (75%), Positives = 95/114 (83%)

Query:   343 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSY 402
             SKRRK++A  A+++   + IREPRVVVQT S+VDILDDGYRWRKYGQKVV+GNPNP RSY
Sbjct:   451 SKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNP-RSY 509

Query:   403 YKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNG 456
             YKCT  GC VRKHVERASHD K+VITTYEGKHNHDVP AR SSH   G S GNG
Sbjct:   510 YKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDS-GNG 562

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
 Identities = 72/108 (66%), Positives = 87/108 (80%)

Query:   344 KRRKMDALVADVTPVV--KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRS 401
             KRR  +  +++  P    + + EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP P RS
Sbjct:   372 KRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RS 430

Query:   402 YYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAA 449
             YYKCT  GC VRKHVERA+ DPKAV+TTYEGKHNHD+P A++SSH AA
Sbjct:   431 YYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAAA 478

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 8.6e-72, Sum P(3) = 8.6e-72
 Identities = 64/81 (79%), Positives = 71/81 (87%)

Query:   362 IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASH 421
             ++EPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNP RSYYKCT  GC VRKHVERA  
Sbjct:   217 VKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP-RSYYKCTFTGCFVRKHVERAFQ 275

Query:   422 DPKAVITTYEGKHNHDVPTAR 442
             DPK+VITTYEGKH H +PT R
Sbjct:   276 DPKSVITTYEGKHKHQIPTPR 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 3.1e-71, Sum P(3) = 3.1e-71
 Identities = 75/110 (68%), Positives = 85/110 (77%)

Query:   343 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSY 402
             SKRRK++A   + +   +  REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNP RSY
Sbjct:   336 SKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNP-RSY 394

Query:   403 YKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPS 452
             YKCT  GC V KHVERAS D K+V+TTY GKH H VP AR SSH  AG S
Sbjct:   395 YKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSS 444

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 139/263 (52%), Positives = 165/263 (62%)

Query:   189 EPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCE 248
             E  Q  + T+ I       +      P+DDGYNWRKYGQK VKGS+FPRSYYKCTHP C 
Sbjct:   222 ETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACP 281

Query:   249 VKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMS--IQEERPDKVSSL--TCRD 304
             VKK  ERS DGQ+TEIIYKG H+H  PQ  R  + G+  S  I  +     SSL  + RD
Sbjct:   282 VKKKVERSLDGQVTEIIYKGQHNHELPQ-KRGNNNGSCKSSDIANQFQTSNSSLNKSKRD 340

Query:   305 GSMYGQMSHAMETNGTPDLSPVANXXXXXXXXXXXXQYSKRRKMDALVAD-VTPVVKPIR 363
                  Q++   + +   D   V N               KRR  +  V++ V    + + 
Sbjct:   341 QET-SQVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVT 399

Query:   364 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDP 423
             EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP P RSYYKCT   C VRKHVERA+ DP
Sbjct:   400 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPDCGVRKHVERAATDP 458

Query:   424 KAVITTYEGKHNHDVPTARTSSH 446
             KAV+TTYEGKHNHDVP ARTSSH
Sbjct:   459 KAVVTTYEGKHNHDVPAARTSSH 481

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 133/253 (52%), Positives = 159/253 (62%)

Query:   210 GGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGT 269
             G      +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+
Sbjct:   177 GREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGS 236

Query:   270 HDHPKPQLSRRYSAGNMM--------SIQEER------PDKVSSLTCRDG-SMYGQMSHA 314
             H+HPKPQ +RR S+ +          S+   R      P+  +S    D   M  + +  
Sbjct:   237 HNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTT 296

Query:   315 METNGTPDLSPVANXXXXXXXXXXXXQYSKRRKMDALVADVTPV-VKPIREPRVVVQTLS 373
              ++ G  +    ++              +KR K D           K +REPR+VVQT S
Sbjct:   297 SDSVGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTS 356

Query:   374 EVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGK 433
             ++DILDDGYRWRKYGQKVV+GNPNP RSYYKCT  GCPVRKHVERASHD +AVITTYEGK
Sbjct:   357 DIDILDDGYRWRKYGQKVVKGNPNP-RSYYKCTTIGCPVRKHVERASHDMRAVITTYEGK 415

Query:   434 HNHDVPTARTSSH 446
             HNHDVP AR S +
Sbjct:   416 HNHDVPAARGSGY 428

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 114/232 (49%), Positives = 152/232 (65%)

Query:   213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDH 272
             S  S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+H
Sbjct:   162 SRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNH 221

Query:   273 PKPQLSRRYSAGNM-MSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANXXX 331
             PKP+ ++R S  ++  S+   R    +S+       + Q  ++  +    DL   +    
Sbjct:   222 PKPEFTKRPSQSSLPSSVNGRRLFNPASVVSEP---HDQSENSSISFDYSDLEQKSFKSE 278

Query:   332 XXXXXXXXXQYS-KRRKMDALVADVT-PVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQ 389
                      Q   KR K +     ++  V K ++EPRVVVQT+S++D+L DG+RWRKYGQ
Sbjct:   279 YGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQ 338

Query:   390 KVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 441
             KVV+GN NP RSYYKCT  GC V+K VER++ D +AV+TTYEG+HNHD+PTA
Sbjct:   339 KVVKGNTNP-RSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 5.0e-52, Sum P(2) = 5.0e-52
 Identities = 58/105 (55%), Positives = 81/105 (77%)

Query:   343 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSY 402
             +KRRK    + +++PV +   + R+VV T +  DI++DGYRWRKYGQK V+G+P P RSY
Sbjct:   272 AKRRKKGGNI-ELSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSY 329

Query:   403 YKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHD 447
             Y+C++ GCPV+KHVER+SHD K +ITTYEGKH+HD+P  R  +H+
Sbjct:   330 YRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVVTHN 374

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
 Identities = 56/97 (57%), Positives = 67/97 (69%)

Query:   216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275
             S DGYNWRKYGQK VKGSE PRSYYKCTHP C VKK  ERS +GQ++EI+Y+G H+H KP
Sbjct:   164 SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKP 223

Query:   276 Q--LSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQ 310
                L RR S+      Q+  P  ++S    +GSM GQ
Sbjct:   224 SCPLPRRASSSISSGFQKP-PKSIAS----EGSM-GQ 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WV0	WRK20_ARATH	No assigned EC number	0.5729	0.9202	0.9317	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00012605 hypothetical protein (558 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	564
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-34
smart00774	59	smart00774, WRKY, DNA binding domain	7e-33
smart00774	59	smart00774, WRKY, DNA binding domain	3e-29

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  125 bits (317), Expect = 4e-35
 Identities = 41/60 (68%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 378 LDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 437
           LDDGY WRKYGQK V+G+P P RSYY+CT+ GCPV+K VER+S DP+ V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFP-RSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  123 bits (312), Expect = 2e-34
 Identities = 43/60 (71%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 274
            DDGYNWRKYGQK VKGS FPRSYY+CT P C VKK  ERS  D QI EI Y+G H+HPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  119 bits (301), Expect = 7e-33
 Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 2/60 (3%)

Query: 378 LDDGYRWRKYGQKVVRGNPNPSRSYYKCTNA-GCPVRKHVERASHDPKAVITTYEGKHNH 436
           LDDGY+WRKYGQKV++G+P P RSYY+CT   GCP +K V+R+  DP  V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYP-RSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  109 bits (275), Expect = 3e-29
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERS-HDGQITEIIYKGTHDH 272
           DDGY WRKYGQK +KGS +PRSYY+CT+   C  KK  +RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	564
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.94
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	90.44
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	84.91
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	81.18

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=3.2e-30  Score=207.63  Aligned_cols=59  Identities=66%  Similarity=1.367  Sum_probs=52.5

Q ss_pred             CCccchhhhccCccccCCCCCccccccccCCCCCcceeEEecCCCCCeEEEEEeccCCCC
Q 008458          378 LDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD  437 (564)
Q Consensus       378 ~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~  437 (564)
                      ++|||+|||||||.|+|+++| |+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~p-RsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYP-RSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCE-EEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCcee-eEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            589999999999999999999 99999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=3.6e-29  Score=201.28  Aligned_cols=58  Identities=64%  Similarity=1.321  Sum_probs=56.5

Q ss_pred             CCccchhhhccCccccCCCCCccccccccC-CCCCcceeEEecCCCCCeEEEEEeccCCC
Q 008458          378 LDDGYRWRKYGQKVVRGNPNPSRSYYKCTN-AGCPVRKHVERASHDPKAVITTYEGKHNH  436 (564)
Q Consensus       378 ~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~-~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH  436 (564)
                      ++|||+|||||||.|+|+++| |+|||||. +||+|+|+|||+.+|+.+|+|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~p-RsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFP-RSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCc-ceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            489999999999999999999 99999998 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.94  E-value=1.4e-28  Score=198.23  Aligned_cols=59  Identities=61%  Similarity=1.230  Sum_probs=50.8

Q ss_pred             CCCCccchhcCccccCCCCCCCCccccCCCccceeeeEEecc-CCcEEEEEecCCCCCCC
Q 008458          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK  274 (564)
Q Consensus       216 ~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~  274 (564)
                      .+|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.++.|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            389999999999999999999999999999999999999986 88999999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=1.1e-27  Score=192.65  Aligned_cols=57  Identities=58%  Similarity=1.134  Sum_probs=54.8

Q ss_pred             CCCCccchhcCccccCCCCCCCCccccCC-CccceeeeEEecc-CCcEEEEEecCCCCC
Q 008458          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERSH-DGQITEIIYKGTHDH  272 (564)
Q Consensus       216 ~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~-~~C~akK~Vers~-Dg~i~~i~Y~G~HnH  272 (564)
                      .+|||.|||||||.|+|+++||+|||||+ ++|+|+|+||++. |+++++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 8999999999985 899999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.44  E-value=0.12  Score=39.99  Aligned_cols=49  Identities=29%  Similarity=0.708  Sum_probs=25.2

Q ss_pred             CCCccchhhhccCccccCCCCCccccccccCC---CCCcceeEEecCCCCCeEEEEEeccCCC
Q 008458          377 ILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNA---GCPVRKHVERASHDPKAVITTYEGKHNH  436 (564)
Q Consensus       377 ~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~---gC~a~K~Vqr~~~D~~~~~~TY~G~HnH  436 (564)
                      ++-|||.-++....  .     ...|++|+..   +|+|+=.+.  . +...++ ...++|||
T Consensus        11 L~~~Gy~y~~~~~~--~-----~~~~WrC~~~~~~~C~a~~~~~--~-~~~~~~-~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN--D-----GKTYWRCSRRRSHGCRARLITD--A-GDGRVV-RTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE---S-----S-EEEEEGGGTTS----EEEEE-----TTEEE-E-S---SS
T ss_pred             EEECCeEEECcCCC--C-----CcEEEEeCCCCCCCCeEEEEEE--C-CCCEEE-ECCCccCC
Confidence            45789987776555  2     2789999953   899988877  2 333333 44499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.91  E-value=0.45  Score=36.69  Aligned_cols=48  Identities=23%  Similarity=0.639  Sum_probs=23.3

Q ss_pred             CCCCccchhcCccccCCCCCCCCccccCCC---ccceeeeEEeccCCcEEEEEecCCCCC
Q 008458          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHP---NCEVKKLFERSHDGQITEIIYKGTHDH  272 (564)
Q Consensus       216 ~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~---~C~akK~Vers~Dg~i~~i~Y~G~HnH  272 (564)
                      .-|||.-++....      ..+.|++|+..   +|.|+=.+. ..++.+  +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~~~--~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDGRV--VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TTEE--EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCCEE--EECCCccCC
Confidence            4678776664443      55689999875   799976666 233333  335589999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=81.18  E-value=1.4  Score=36.91  Aligned_cols=29  Identities=24%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             ccceeeeEEeccCCcEEEEEecCCCCCCC
Q 008458          246 NCEVKKLFERSHDGQITEIIYKGTHDHPK  274 (564)
Q Consensus       246 ~C~akK~Vers~Dg~i~~i~Y~G~HnH~~  274 (564)
                      +|+|+=.|.+..++....+.+..+|||+.
T Consensus        61 gC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   61 GCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             CCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            69998888777788887788999999984

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	564
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		9e-30
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-25

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVIT 428
           VQT SEVD+LDDGYRWRKYGQKVV+GNP P RSYYKCT  GC VRKHVERA+ DPKAV+T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 429 TYEGKHNHDVP 439
           TYEGKHNHD+P
Sbjct: 67  TYEGKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 366 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKA 425
           R+VV T +  DI++DGYRWRKYGQK V+G+P P RSYY+C++ GCPV+KHVER+SHD K 
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSYYRCSSPGCPVKKHVERSSHDTKL 60
Query: 426 VITTYEGKHNHDVP 439
           +ITTYEGKH+HD+P
Sbjct: 61  LITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	564
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-45
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	9e-26
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-43
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  153 bits (389), Expect = 2e-45
 Identities = 59/77 (76%), Positives = 64/77 (83%), Gaps = 1/77 (1%)

Query: 363 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHD 422
                 VQT SEVD+LDDGYRWRKYGQKVV+GNP P RSYYKCT  GC VRKHVERA+ D
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATD 60

Query: 423 PKAVITTYEGKHNHDVP 439
           PKAV+TTYEGKHNHD+P
Sbjct: 61  PKAVVTTYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 99.8 bits (249), Expect = 9e-26
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  148 bits (376), Expect = 1e-43
 Identities = 50/76 (65%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 366 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKA 425
           R+VV T +  DI++DGYRWRKYGQK V+G+P P RSYY+C++ GCPV+KHVER+SHD K 
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSYYRCSSPGCPVKKHVERSSHDTKL 60

Query: 426 VITTYEGKHNHDVPTA 441
           +ITTYEGKH+HD+P  
Sbjct: 61  LITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  100 bits (250), Expect = 6e-26
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ERS HD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 49/233 (21%)

Query: 309 GQMSHAMETNGTPDLSPVANDDSVEP-DVDDDDQYSK----RRKMDALVADVTPVVKPIR 363
           G+  +  +     D+  V  D  V+  D  D     K    + ++D ++     V   +R
Sbjct: 12  GEHQYQYK-----DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 364 -------EPRVVVQTLSEVDILDDGYRW--RKYGQKVVRGNPNPSRSYYKCT----NAGC 410
                  +   +VQ   E ++L   Y++      +   R     +R Y +      N   
Sbjct: 67  LFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 411 PVRK-HVERASHDPKAVITT--YEGKHNHDVPTARTSSHDAAGPSAG-----NGPCRIIS 462
              K +V R    P   +     E +   +V           G  +G        C    
Sbjct: 125 VFAKYNVSR--LQPYLKLRQALLELRPAKNV-----LIDGVLG--SGKTWVALDVCL--- 172

Query: 463 EEGEAISLDLGVG-ISSATENRSN---EQPQALHSELAHSHPHASSSSYKIIQ 511
                  +D  +  ++    N      E  Q L  ++  +    S  S  I  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	564
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.95
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.95

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=6.8e-35  Score=243.48  Aligned_cols=76  Identities=66%  Similarity=1.271  Sum_probs=73.3

Q ss_pred             CceeeeccccccCCCccchhhhccCccccCCCCCccccccccCCCCCcceeEEecCCCCCeEEEEEeccCCCCCCCC
Q 008458          365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA  441 (564)
Q Consensus       365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p~~  441 (564)
                      .||+|+|.+++++++|||+|||||||.|||+++| |+|||||.+||+|+|+|||+.+|+.+|+|||+|+|||+.|.+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~P-RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYP-RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSC-EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCc-eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            3799999999999999999999999999999999 999999999999999999999999999999999999999863

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.6e-34  Score=242.31  Aligned_cols=75  Identities=79%  Similarity=1.317  Sum_probs=69.7

Q ss_pred             CceeeeccccccCCCccchhhhccCccccCCCCCccccccccCCCCCcceeEEecCCCCCeEEEEEeccCCCCCCC
Q 008458          365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT  440 (564)
Q Consensus       365 prvvv~t~se~d~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p~  440 (564)
                      .+|+|+|.+++++++|||+|||||||.|||+++| |+|||||.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~P-RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSC-EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCe-eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            4789999999999999999999999999999999 99999999999999999999999999999999999999884

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.95  E-value=4e-29  Score=208.76  Aligned_cols=63  Identities=56%  Similarity=1.060  Sum_probs=59.4

Q ss_pred             CCCCCCccchhcCccccCCCCCCCCccccCCCccceeeeEEecc-CCcEEEEEecCCCCCCCCC
Q 008458          214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (564)
Q Consensus       214 ~~~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~  276 (564)
                      ...+|||+|||||||.|||++|||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus        12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            35699999999999999999999999999999999999999975 7899999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.95  E-value=4.9e-29  Score=209.10  Aligned_cols=63  Identities=54%  Similarity=1.022  Sum_probs=59.0

Q ss_pred             CCCCCCccchhcCccccCCCCCCCCccccCCCccceeeeEEec-cCCcEEEEEecCCCCCCCCC
Q 008458          214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKPQ  276 (564)
Q Consensus       214 ~~~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~~C~akK~Vers-~Dg~i~~i~Y~G~HnH~~P~  276 (564)
                      .+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+ .|++++.|+|+|+|||+.|.
T Consensus        15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            3579999999999999999999999999999999999999996 58899999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	564
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-34
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-25

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (308), Expect = 2e-34
 Identities = 59/71 (83%), Positives = 64/71 (90%), Gaps = 1/71 (1%)

Query: 369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVIT 428
           VQT SEVD+LDDGYRWRKYGQKVV+GNP P RSYYKCT  GC VRKHVERA+ DPKAV+T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATDPKAVVT 59

Query: 429 TYEGKHNHDVP 439
           TYEGKHNHD+P
Sbjct: 60  TYEGKHNHDLP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.0 bits (244), Expect = 1e-25
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHP 273
             DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H 
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 68

Query: 274 KP 275
            P
Sbjct: 69  LP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	564
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.95

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-34  Score=234.83  Aligned_cols=71  Identities=83%  Similarity=1.420  Sum_probs=68.4

Q ss_pred             eeccccccCCCccchhhhccCccccCCCCCccccccccCCCCCcceeEEecCCCCCeEEEEEeccCCCCCCC
Q 008458          369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPSRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPT  440 (564)
Q Consensus       369 v~t~se~d~~dDGy~WRKYGQK~ikGn~~P~RsYYrCt~~gC~a~K~Vqr~~~D~~~~~~TY~G~HnH~~p~  440 (564)
                      |++.++++++||||+|||||||.|||+++| |+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~p-RsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYP-RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSC-EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCc-eEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            568899999999999999999999999999 99999999999999999999999999999999999999885

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=1.5e-29  Score=206.70  Aligned_cols=62  Identities=55%  Similarity=1.052  Sum_probs=58.7

Q ss_pred             CCCCCccchhcCccccCCCCCCCCccccCCCccceeeeEEecc-CCcEEEEEecCCCCCCCCC
Q 008458          215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (564)
Q Consensus       215 ~~~DGy~WRKYGQK~Ikgs~~PRsYYrCt~~~C~akK~Vers~-Dg~i~~i~Y~G~HnH~~P~  276 (564)
                      ..+|||.|||||||.|||++|||+||||++.+|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus         9 ~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           9 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4799999999999999999999999999999999999999976 7899999999999999873