Citrus Sinensis ID: 008463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560----
Protein Sequence
MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEcccccccEEEEEcccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHcccccccccccccHHHHHHHccccccccccccccccccHHHHHHcccccccHHHccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEccccccEEEEEEccccccccccEEEEEEEcccccccccccEEcccccEEEEcHHHHHHHHHcccccEEEEEcccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHccccccccccccccccccccEEEEccccccHHHHHHHHcccccccccccccccEEEcccccccHHHcccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHccccccccccccEEcccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHccccccccccccccccEcccccccccccccccccccccccccccEccccccccccccccHccccc
Coil and Loop (DISEMBL)
mgdrensdellpdgcrVEVRVrkngkkdkiiiekdtpdglppgwtkeikvtktgrkvrrdpyyidpasgyifRSMKDAVRYVEtgeigrlaykpkddgnqdeedleddkdnsptatkkqklevtgtetditsqstklsevakdedaldsagtrecishsehtsgqveagtelrgsnlseakdsdkmdyrkdsdknvlstpvvvvlpqgqssdvgEMMDETMNTtlgksmsrkkkvfdlpRRASKRLaglaldptpelktsnrvrrkqsdkieasstveafcsgsqvhlasqqpdqleakpeancafdtskstevssatseakhpsgdlnassgkietgcksdqpqgcavdltmkhpdnietdieadknpsplidlpfgdllsdpcIAFAIKTLtgetfetssdkevslesnsgksegfaflegqagkkrenegeekqenLATSEEQAANVESKlktdeklenpldlpfadiwrdpCIEFAIKTLTgaipvgndwdvQDYFQQQInssqtqpnnnfcqtEFLCqqfdslekpvsreqartgnlsiqnpggsgfhqqsekrcnech
Flexible Loop (DISEMBL)
mgdrensdellpdgcrvevrvrkngkkdkiiiekdtpdglppgwtkeikvtktgrkvrrdpyyidpasgyifrsMKDAVRYVETGeigrlaykpkddgnqdeedleddkdnsptatkkqklevtgtetditsqstklsevakdeDALDSAGTrecishsehtsgqveagtelrgsnlseakdsdkmdyrkdsdknvlstpvvvvlpqgqssdvgeMMDETMnttlgksmsrkkkvfdlPRRASkrlaglaldptpelktsnrvrrkqsdkiEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSsatseakhpsgdlnassgkiETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTgetfetssdkevslesnsgksegfaflegqagkkrenegeekqenlatseeqAANVEsklktdeklenplDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARtgnlsiqnpggsgfhqqsekrcnech
Low Complexity Region (SEG)
MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Disordered region (IsUnstruct)
*****************************IIIE*******PPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAY************************************************************************************************************VVVV***********************************************************************************************************************************************************************LIDLPFGDLLSDPCIAFAIKTLTGE*******************************************************************LDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQI********NNFCQTEFLCQQF***************************************
Disordered Region (DISOPRED)
******S***LPDGCRVEVR***********IEKDTPDGLPPGWTKEIKVT**********YYIDPASGYIFRSMKDAVRYVE********************************************************************************************************************************************************************************************************************************************************************************************************LLSDPCIAFAIKTLTGE*******************************************************************************CIEFAIKTLTGAIPVGNDWDV*******************CQTEF********************************************
Disordered Region (DISEMBL)
**********LPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD******************************************************GTRE*****************LRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKT*****************VEAFCSGSQVHLASQQPDQLEAKPEANCAF***********************ASSGKI*********QGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETF***************KSEGFAFLEGQ******************************KTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLE********RTGNLSIQNP*****************
Disordered Region (DISPRO)
*******DELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD*******************************************************************************************************PVVVV****************************KKVFD*PRRASKRLAGLALDPT*******************************************************************************************************************SPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLES****************************************************PLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEK**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENExxxxxxxxxxxxxxxxxxxxxxxxxxxxENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	564	2.2.26 [Sep-21-2011]
Q9LTJ8	746	Methyl-CpG-binding domain	yes	no	0.154	0.116	0.585	4e-25

>sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 70/94 (74%), Gaps = 7/94 (7%)

Query: 16  RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
           +VE+RVRKNG+KDK+I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct: 15  KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74

Query: 75  MKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDD 108
            KDA RYVETG IG  A K K      E D+EDD
Sbjct: 75  FKDASRYVETGNIGHYARKLK------ESDIEDD 102

Probable transcriptional regulator.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
255539489	644	conserved hypothetical protein [Ricinus	0.902	0.790	0.446	3e-94
224122408	762	methyl binding domain protein [Populus t	0.758	0.561	0.417	4e-64
359490294	637	PREDICTED: uncharacterized protein LOC10	0.854	0.756	0.333	3e-55
297741054	560	unnamed protein product [Vitis vinifera]	0.530	0.533	0.381	7e-48
449446179	522	PREDICTED: uncharacterized protein LOC10	0.881	0.952	0.313	1e-47
449520114	487	PREDICTED: uncharacterized protein LOC10	0.757	0.876	0.302	2e-37
356561673	546	PREDICTED: uncharacterized protein LOC10	0.851	0.879	0.304	3e-37
224134745	243	methyl binding domain protein [Populus t	0.294	0.683	0.459	5e-37
297796037	680	hypothetical protein ARALYDRAFT_495292 [	0.434	0.360	0.353	1e-28
297742566	1076	unnamed protein product [Vitis vinifera]	0.549	0.288	0.311	2e-28

>gi|255539489|ref|XP_002510809.1| conserved hypothetical protein [Ricinus communis] gi|223549924|gb|EEF51411.1| conserved hypothetical protein [Ricinus communis]

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 249/558 (44%), Positives = 327/558 (58%), Gaps = 49/558 (8%)

Query: 28  DKIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEI 87
           DK ++EK  P+GLP GWTKEIKVTK G K+RRDPYY DP SGY+FRSMKDA+RY+ETGE+
Sbjct: 110 DKFVVEKSEPEGLPLGWTKEIKVTKRGHKIRRDPYYTDPVSGYVFRSMKDALRYLETGEV 169

Query: 88  GRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETD-ITSQSTKLSEVAKDEDA 146
           GRLA+KPKD GN D  +LEDDK  +    KKQKL    T T  I++ S+KL EVAKDE A
Sbjct: 170 GRLAFKPKDTGN-DNVELEDDKTCTSATAKKQKLAANETPTSLISAHSSKLIEVAKDEHA 228

Query: 147 LDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLP 206
           + SA T E +  SEHTSG    G   + S   E K S +   + D     L+T  V VL 
Sbjct: 229 ISSASTGESLPISEHTSGHCVLGLPSQNSEAPEGKSSSQTVRKSDLTNGALAT-AVDVLS 287

Query: 207 QGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR- 265
             Q S+ GEM D  + T  G   S+KKK   LPRRASKRLAGL LDPTPELKT NRVRR 
Sbjct: 288 IEQPSESGEMKD--VITKAGLGKSKKKKDLSLPRRASKRLAGLPLDPTPELKTINRVRRG 345

Query: 266 --KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKH 323
              QS+ I A +   +  +G                 EA  A DTSK+T+    +++ KH
Sbjct: 346 AVGQSNDIAAITDESSSPAGR----------------EAKHASDTSKNTK-RLESNKGKH 388

Query: 324 PSGDLNASSGKIETGCKSDQPQ-----GCAVDLTMK--HPDNIETDIEADKNPSPLIDLP 376
           P G ++A S +++T  K ++         +  LT K  H  N+ETD  AD+     +DLP
Sbjct: 389 PIGHMHAPS-ELKTENKGNEKHEHPTVSPSRSLTFKEEHAGNMETDNNADEKLGVPLDLP 447

Query: 377 FGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKK--RENEGE 434
            G+L  DPCIAFAIKTLTG +FE S   +VS  SN+ +  G + LE  A K+  +  E E
Sbjct: 448 LGELWQDPCIAFAIKTLTGISFENSEGVQVSSGSNNSECGGLSALEDNARKEDLQNREPE 507

Query: 435 EKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW 494
           ++ ++L+        + +K    EK  +PL++ FAD W DPCI+FAIKTLTGAIP+  D 
Sbjct: 508 KQVQHLSNIISHDVEISNK----EKPGSPLNVDFADPWADPCIQFAIKTLTGAIPLACDR 563

Query: 495 DVQDYFQQQINSSQTQPNNNFC--------QTEFLCQQFDSLEKPVSREQAR--TGNLSI 544
            +QD  QQ+ +SSQ+Q ++           QTE  CQQF    +P   + A      +S+
Sbjct: 564 VIQDCLQQKASSSQSQESSGLILQNVGEPDQTEVFCQQFSISPQPSYNQGALPPKKKVSL 623

Query: 545 QNPGGSGFHQQSEKRCNE 562
             P G+ + Q +++R  E
Sbjct: 624 GYPSGTIYQQHNDERSKE 641

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122408|ref|XP_002318826.1| methyl binding domain protein [Populus trichocarpa] gi|222859499|gb|EEE97046.1| methyl binding domain protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 201/481 (41%), Positives = 256/481 (53%), Gaps = 53/481 (11%)

Query: 110 DNSPTATKKQKLEVTGTETDITS-QSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEA 168
           D   +  KKQKL V  T + I S QS KL  + KDE  L+SA   EC   S+HTSG V  
Sbjct: 304 DQFVSVIKKQKLAVNRTPSSIISDQSLKLGGIVKDEQILNSASAGECTILSKHTSGGV-- 361

Query: 169 GTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKS 228
           GTE   S   E K S++ + + DS K     P+  VL    S +VGE   E+  T + KS
Sbjct: 362 GTESSSSEFLEDKGSNQTEEKSDSVK--AEDPLQAVLQDKPSVEVGETKKESKKTGVRKS 419

Query: 229 MSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQ---SDKIEASSTVEAFCSGSQ 285
             RKK   +LPRRASKRLAG+ L PTPELK + R RR     S++I AS++ +A C    
Sbjct: 420 --RKKTDLNLPRRASKRLAGIPLAPTPELKAATRARRAALEPSNEIVASTSEQASCGDPD 477

Query: 286 VHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQ 345
             L ++             AFDTSKSTE+   ++E+KH   D+   +GK  +G + D+  
Sbjct: 478 TELNTKH------------AFDTSKSTEIPVDSNESKHAIVDVE-HAGKAGSGKQGDKKH 524

Query: 346 GCAVD------LTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFE 399
              V        T +H   IET    D+      DLP  +L  DPCIAFAIKTLTG + +
Sbjct: 525 QYDVASPPGNLATGEHAGKIETYSTGDEKQGLPFDLPLEELWQDPCIAFAIKTLTGTSVD 584

Query: 400 TSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEK 459
            S   +VS  S++ +  G A L+  AGK  E+ G     NL+  EE A  V +  K+DEK
Sbjct: 585 DSDSIKVSPGSSNNEFVGMATLDNHAGK--EDIGNNG--NLSILEEHARAVGTSNKSDEK 640

Query: 460 LENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWD-VQDYFQQQINSSQTQ-------P 511
             +PL LPFAD W DPCIEFAIKTLTGA+P+  D+D VQDY   Q+ SSQ Q       P
Sbjct: 641 PVSPLVLPFADAWSDPCIEFAIKTLTGALPL--DFDMVQDYLPPQVRSSQPQESRGFTLP 698

Query: 512 N-NNFCQTEFLCQQFDSLEKPVSREQARTG---------NLSIQNPGGSGFHQQSEKRCN 561
           N   F QTEFLCQQF + EKP   + A  G         NL      G      SE+R N
Sbjct: 699 NVGEFRQTEFLCQQFGTSEKPSFNQAALVGPALPHTKHVNLGYAAAAGPSRRLHSEERSN 758

Query: 562 E 562
           +
Sbjct: 759 K 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490294|ref|XP_002263477.2| PREDICTED: uncharacterized protein LOC100263513 [Vitis vinifera]

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 187/561 (33%), Positives = 261/561 (46%), Gaps = 79/561 (14%)

Query: 29  KIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 88
           K++ E+ T +GLPPGW KEIK+ K    VRRD YY DP +GYIFRSMKD +RY++TG+ G
Sbjct: 93  KVVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPG 152

Query: 89  RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDIT-SQSTKLSEVAKDEDAL 147
           RLA+KPK   + D  +LEDDK  SP   +KQ+L   G    IT  QS KL ++A DE   
Sbjct: 153 RLAFKPKPRDSGD-INLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIP 211

Query: 148 DSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVL-STPVVVVLP 206
            SA +   ++ S                 LSEAK S+ +  + D  KNVL S P+V  L 
Sbjct: 212 KSACSGAKVTESSLY--------------LSEAKGSEPIGEKSDDAKNVLDSAPLVEPLA 257

Query: 207 QGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRK 266
           + Q  +    +     T  G    R KK  DLPRRASKRLAGL  D TPELKT+NR  R 
Sbjct: 258 EKQPLENRAKVCGKRKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNRGSRV 317

Query: 267 QSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSG 326
            +     S  +EA  +              EA+P+  C+F  S+  EV   ++  K P  
Sbjct: 318 AAGH---SGEIEAGIA--------------EAEPKTKCSFQPSQKLEVLLESNSGKTPVE 360

Query: 327 DL---NASSGKIETGCKSDQPQGCAVDLTM-------KHPDNIETDIEADKNPSPLIDLP 376
           DL      + K+E   K  +  GC++ L +       +H    E + +   NP P  +LP
Sbjct: 361 DLVPPEEQAEKVEAENKDKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELP 420

Query: 377 FGDLLSDPCIAFAIKTLTGETF--ETSSDKEVS---LESNSGKSEGFAFLEGQAGKKREN 431
           FGD  +DPCI FAIKTLT +    E    +++S    ++N+G + G   L+         
Sbjct: 421 FGDSWTDPCIEFAIKTLTSDHLFIEDYFQQQLSSPHAQTNNGSNFGLGNLQ--------- 471

Query: 432 EGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVG 491
                Q +    +   A   +      +L+ P+   F    +D  + F     TG    G
Sbjct: 472 -----QTDFPFQQYDVAENPA-----PELQAPVQPTF---LKDGNVNFPSSGETGGYQPG 518

Query: 492 NDWDVQDY-FQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQA-------RTGNLS 543
            D          QI++       NF QT+F  Q     + P  + QA       + GN  
Sbjct: 519 EDKSKASLKAPAQIDNGLNLGLGNFHQTDFSFQHNVMAQNPAPKPQAPVQPIFQQAGNAR 578

Query: 544 IQNPGGSGFHQQSEKRCNECH 564
             + G +G  Q  E +  E  
Sbjct: 579 FLSSGQTGLRQPGEDKSKELQ 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741054|emb|CBI31785.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 187/375 (49%), Gaps = 76/375 (20%)

Query: 29  KIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 88
           K++ E+ T +GLPPGW KEIK+ K    VRRD YY DP +GYIFRSMKD +RY++TG+ G
Sbjct: 93  KVVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPG 152

Query: 89  RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDIT-SQSTKLSEVAKDEDAL 147
           RLA+KPK   + D  +LEDDK  SP   +KQ+L   G    IT  QS KL ++A DE   
Sbjct: 153 RLAFKPKPRDSGD-INLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIP 211

Query: 148 DSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVL-STPVVVVLP 206
            SA +   ++ S                 LSEAK S+ +  + D  KNVL S P+V  L 
Sbjct: 212 KSACSGAKVTESSLY--------------LSEAKGSEPIGEKSDDAKNVLDSAPLVEPLA 257

Query: 207 QGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRK 266
           + Q  +    +     T  G    R KK  DLPRRASKRLAGL  D TPELKT+NR    
Sbjct: 258 EKQPLENRAKVCGKRKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNR---- 313

Query: 267 QSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSG 326
                           GS+V  A+    ++EA+ +A                        
Sbjct: 314 ----------------GSRV--AAGHSGEIEAEEQAE----------------------- 332

Query: 327 DLNASSGKIETGCKSDQPQGCAVDLTM-------KHPDNIETDIEADKNPSPLIDLPFGD 379
                  K+E   K  +  GC++ L +       +H    E + +   NP P  +LPFGD
Sbjct: 333 -------KVEAENKDKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELPFGD 385

Query: 380 LLSDPCIAFAIKTLT 394
             +DPCI FAIKTLT
Sbjct: 386 SWTDPCIEFAIKTLT 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446179|ref|XP_004140849.1| PREDICTED: uncharacterized protein LOC101215200 [Cucumis sativus]

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 270/548 (49%), Gaps = 51/548 (9%)

Query: 31  IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90
           ++ +++ D LPPGWT ++KV K+G+K   D  YIDP +G   RS++D  RY+ +G++ RL
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKK---DKSYIDPVNGNALRSIRDVHRYLTSGKVSRL 57

Query: 91  AYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDI--TSQSTKLSEVAKDEDALD 148
            +K ++  + + E  + D+ +SP  +KK+ L +      I  +  +++ SE+   E    
Sbjct: 58  THKSRNQRDNNIE-FQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFP 116

Query: 149 SAGTRECISHS--EHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLP 206
           +A   E +     + + G + A      S  ++AK   + D + D  + VL TP   +  
Sbjct: 117 NASVGETVLFPIPDPSLGGISAKPHC--STPTDAKGLKQSDGKNDISEIVL-TPKEFIQH 173

Query: 207 QGQSSDVGEMMDETMNTTLGKSMSRKKKVFD--LPRRASKRLAGLALDPTPELKTSNRVR 264
           +    +           T G+S  R++K  D  LPRRASKRLAGL  +P  ++KT  R R
Sbjct: 174 KCPIEN---------GATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRAR 224

Query: 265 R---KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEA 321
               ++SDK  AS+T           +A Q P+  + K + N   D SK      +  +A
Sbjct: 225 SVACEESDKQVASTTK---------LVAFQCPENPDVKHKTNSTADPSKINTSPDSGGKA 275

Query: 322 KHPSGDLNASSGKIETGCKSDQPQGCAV----DLTMKHPDNIETDIEAD-KNPSPLIDLP 376
            H   DL+             QP+  +     D+  KH   +E + +A+ K   PL+ LP
Sbjct: 276 -HICVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLP 334

Query: 377 FGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEK 436
             DLL+DPCIAFA+KTLTG+  + S   + SL  N    + F         +R N G E 
Sbjct: 335 MEDLLTDPCIAFAVKTLTGDVLDASISSDASLTPN--HVDPFTPF---TPNERCNSGPEN 389

Query: 437 Q--ENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW 494
           +  E +A  E   A V       EKL++ L+LP  +I+ DPCIEFAIKTLTG IP+ N+ 
Sbjct: 390 KLNEKVACPELPVARVGKVENNVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNR 449

Query: 495 DVQDYFQQQINSSQTQPNNNFCQ---TEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSG 551
           D++DYF Q   S   + N N       ++ C+   S ++   +    +  ++ Q   G+G
Sbjct: 450 DIEDYFYQFSTSKTEKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQT-CGTG 508

Query: 552 FHQQSEKR 559
            H Q   R
Sbjct: 509 LHHQERNR 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520114|ref|XP_004167079.1| PREDICTED: uncharacterized protein LOC101225631 [Cucumis sativus]

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 235/493 (47%), Gaps = 66/493 (13%)

Query: 31  IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90
           ++ +++ D LPPGWT ++KV K+G+K   D  YIDP +G   RS++D  RY+ +G++ RL
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKK---DKSYIDPVNGNALRSIRDVHRYLTSGKVSRL 57

Query: 91  AYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDI--TSQSTKLSEVAKDEDALD 148
            +K ++  + + E  + D+ +SP  +KK+ L +      I  +  +++ SE+   E    
Sbjct: 58  THKSRNQRDNNIE-FQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFP 116

Query: 149 SAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQG 208
           +A   E +      S       +   S  ++AK  ++ D + D  + VL TP        
Sbjct: 117 NASVGETVLFPIPDSSLGGISAKPHCSTPTDAKGLNQSDGKNDISEIVL-TP-------- 167

Query: 209 QSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR--- 265
                 E +        G +                   GL  +P  ++KT  R R    
Sbjct: 168 -----KEFIQHKCPIENGAT------------------KGLQAEPVLQVKTGRRARSVAC 204

Query: 266 KQSDKIEASST-VEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHP 324
           ++SDK  AS+T + AF          Q P+  + K + N   D SK      +  +A H 
Sbjct: 205 EESDKQVASTTKLVAF----------QCPENPDVKHKTNSTADPSKINTSPDSGGKA-HI 253

Query: 325 SGDLNASSGKIETGCKSDQPQGCAV----DLTMKHPDNIETDIEAD-KNPSPLIDLPFGD 379
             DL+             QP+  +     D+  KH   +E + +A+ K   PL+ LP  D
Sbjct: 254 CVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMED 313

Query: 380 LLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQ-- 437
           LL+DPCIAFA+KTLTG+  + S   + SL  N    + F         +R N G E +  
Sbjct: 314 LLTDPCIAFAVKTLTGDVLDASISSDASLTPN--HVDPFTPF---TPNERCNSGPENKLN 368

Query: 438 ENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQ 497
           E +A  E   A V       EKL++ L+LP  +I+ DPCIEFAIKTLTG IP+ N+ D++
Sbjct: 369 EKVACPELPVARVGKVENNVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIE 428

Query: 498 DYFQQQINSSQTQ 510
           DYF  Q ++S+T+
Sbjct: 429 DYF-YQFSTSKTE 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561673|ref|XP_003549104.1| PREDICTED: uncharacterized protein LOC100778412 [Glycine max]

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 175/575 (30%), Positives = 260/575 (45%), Gaps = 95/575 (16%)

Query: 40  LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGN 99
           LPPGWT E++V K G   +RD YY  P+SG  F S  +  RY++  +  +++ +      
Sbjct: 10  LPPGWTVEVRVRKNG---KRDKYYFPPSSGLKFNSKVEVFRYLDNAQ-NKVSIQKISPNV 65

Query: 100 QDEEDLEDDKDNSPTATKKQKLEVTG------TETDIT---------SQSTKLSEVAKDE 144
             E+ + +     P   KK ++   G      T T +T          QS+ +  +A D+
Sbjct: 66  IVEKAIAEGL--PPGWVKKTRITTNGDSVRRDTSTSVTVKPTLSISMGQSSDMDMIANDQ 123

Query: 145 DALDSAGTRECIS--HSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVV 202
               SA + E +S   SE  S Q   G +L  S LS AK SDK    K     V  +  V
Sbjct: 124 QIPRSASSEEYMSVPISECISNQCVVGAKLTSSVLSLAKSSDK----KQGKVGVAQSASV 179

Query: 203 VVLPQGQSSDVGEMMDETMNTTLG---------KSMSRKKKVFDLPRRASKRLAGLALDP 253
                  + +  + + E   T  G         +  ++ KK  +LPRRASKRLAG+ +DP
Sbjct: 180 SGCTNKDAEE--KQLQENSETKHGTEKAQAKDPQCKNKHKKEINLPRRASKRLAGIKVDP 237

Query: 254 TPELKTSNRVRR---KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSK 310
            PELK  NR RR   KQS++ E  + V+   +     LA Q+ +            DT K
Sbjct: 238 VPELKIRNRARRVAVKQSEEEETITNVDKSANSLLDGLAKQKLNNE----------DTDK 287

Query: 311 STEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPS 370
           + EV  +  E +  S     ++  +E  C      G  VD  + +               
Sbjct: 288 TLEVQRSDKEKECFSFSSLENNATVEE-CVRVIENGDKVDAKLDY--------------- 331

Query: 371 PLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLE---SNSGKSEGFAFLEGQAGK 427
             +D P  +LL+DPCIAFAI+TLTG TFE S D +   E   S   K+   A   G+   
Sbjct: 332 -TLDFPLRELLTDPCIAFAIQTLTGVTFEASKDLQTFSELKNSQHSKTSASAAAIGEGDG 390

Query: 428 KRENEGE-----EKQENLATSEEQAANVESKLKTDEKLENPLDLPFADI--WRDPCIEFA 480
           K+ N+G         ENL+   E A + ++ LK   +   P      D+  W DPCIEFA
Sbjct: 391 KKSNDGLGGNEFSSPENLSIPPEHAGDAKTDLKAKNENAGPSSEKTLDMSSWMDPCIEFA 450

Query: 481 IKTLTGAIPVGN-DWDVQDYFQQQINSSQTQPN---------NNFCQTEFLCQQFDSLEK 530
           IKTLTG IP  + D + ++  QQQ++SS +Q +         +N  +T++ C Q+   +K
Sbjct: 451 IKTLTGTIPSDSADQNPKNCLQQQLSSSNSQHSEMALSSVSLDNIYKTDYSCSQYFDTQK 510

Query: 531 PVSREQA-------RTGNLSIQNPGGSGFHQQSEK 558
           P+  +Q+        T N+ I N  GS      E+
Sbjct: 511 PMFNKQSFVDPSLQHTRNIGIGNSAGSRLSHCGER 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134745|ref|XP_002321896.1| methyl binding domain protein [Populus trichocarpa] gi|222868892|gb|EEF06023.1| methyl binding domain protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/211 (45%), Positives = 120/211 (56%), Gaps = 45/211 (21%)

Query: 1   MGDRENSDELLPDGCRVEVRVRKNGKKDK------------------------------- 29
           MGD   SD+ LP+G RVEV+VR +GKKDK                               
Sbjct: 1   MGD-PKSDDWLPEGWRVEVKVRNSGKKDKFYFPPTGGFRFNSKIEVSRYLNGSHPKSEEK 59

Query: 30  -----------IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDA 78
                      ++IEK  P+GLP GWTKEIKVTK G ++RRDP+Y DP SG +FRSMK+A
Sbjct: 60  VGSNDQWSSNKVVIEKTVPEGLPLGWTKEIKVTKKGGRIRRDPFYTDPVSGCVFRSMKEA 119

Query: 79  VRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITS-QSTKL 137
            RY+E+G +GRLA+K     N   E L+DDK  SP   +KQ LEV  T + +T  QS K 
Sbjct: 120 HRYIESGVVGRLAFKRNRKDNYVVE-LKDDKTCSPAVAEKQDLEVNETPSPVTGDQSLKA 178

Query: 138 SEVAKDEDALDSAGTRECISHSEHTSGQVEA 168
            E+AK E  L+SA T ECI  SEHTS Q E+
Sbjct: 179 CEIAKHEQILNSASTGECIIVSEHTSDQYES 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796037|ref|XP_002865903.1| hypothetical protein ARALYDRAFT_495292 [Arabidopsis lyrata subsp. lyrata] gi|297311738|gb|EFH42162.1| hypothetical protein ARALYDRAFT_495292 [Arabidopsis lyrata subsp. lyrata]

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 152/280 (54%), Gaps = 35/280 (12%)

Query: 16  RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
           +VE+RVRKNG+KDK+I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct: 17  KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITSRSGRKNRRDPFFIDPKSEYIFQS 76

Query: 75  MKDAVRYVETGEIGRLAYKPK------DDGNQDEEDLE----DDKDNSPTATKKQKLEV- 123
            KDA RYVETG +G  A K K      DD    + DL     + K       K++K+++ 
Sbjct: 77  FKDASRYVETGNVGHYARKLKESDIEDDDSGNGKTDLRLEYVEKKSADDLLEKEKKIDIH 136

Query: 124 -------TGTETDITSQSTKL--------SEVAKDEDALDSAGTRECISHSEHTSGQVEA 168
                    + +D  S++ K+        S V + +D ++     + ++ S+  +   E 
Sbjct: 137 IRRSKRRNLSSSDEHSKNYKMNSDWSIVTSPVLQAKDPIEKQPIAKRVTRSQTKASTNEE 196

Query: 169 GTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKS 228
             +++  NLS    S      KDS K+ LS+      P+ +S    E   ++    L +S
Sbjct: 197 VVDIKRKNLS----SSNAKSEKDSVKSRLSS-ARSQEPKKESVMKEEEEQDSTEKQLTRS 251

Query: 229 MSRKKK---VFDLPRRASKRLAGLALDPTPELKTSNRVRR 265
            ++ KK      + RR SKRLAG+ L+PTPELKT  +V+R
Sbjct: 252 KAKVKKNELSISVARRTSKRLAGIELEPTPELKTRTKVQR 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742566|emb|CBI34715.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 168/385 (43%), Gaps = 75/385 (19%)

Query: 29  KIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 88
           K++IE+ T DGLP GW KEIK+      +RRDPYY DP SGY+FRS KD  RY++TGEI 
Sbjct: 106 KVVIERSTADGLPAGWIKEIKIRMNENGIRRDPYYTDPVSGYVFRSRKDVFRYLKTGEIS 165

Query: 89  RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQ-------STKLSEVA 141
           R A+KPK+      E L +D+ + P   K+QKL    T   + S        S+++S ++
Sbjct: 166 RHAFKPKNKCINVPE-LPNDEISPPPGAKRQKLMHQKTRRRLFSATASADTGSSEMSNLS 224

Query: 142 KDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNL----SEAKDSDKMDYRKDSDKNVL 197
             E+     G+R+           +E  TE     L     +  +S K   R++SD    
Sbjct: 225 LPEN----QGSRQTKQLFSKPKFALEPPTETLQEKLLVENEKYAESKKSSGRRNSD---- 276

Query: 198 STPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPEL 257
                                  +    G     K K  +LP R+SKRLAGL  D     
Sbjct: 277 -----------------------LQKDKGSKRKSKNKDCNLPCRSSKRLAGLKPDLVGNS 313

Query: 258 KTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSA 317
            +S +     +DKI   S V          L +    QLE   EA      S++ E  S 
Sbjct: 314 GSSEQA-LAVADKISGKSEVIPALGVVMGSLDNTACCQLEVVLEAEPGHHASRAIEAPSD 372

Query: 318 TSEAKHPSGDL------NASSGKIETGCKS-DQPQGCAVDLTMKHPDNIETDIEADKNPS 370
             ++K  +  L         +GK+ETG K+ D+P+                         
Sbjct: 373 VEQSKKDNRHLEDEAVQEEEAGKLETGKKTGDEPE------------------------L 408

Query: 371 PLIDLPFGDLLSDPCIAFAIKTLTG 395
           P +D PF D+ SDPC+ FA KTLTG
Sbjct: 409 PPMDFPFMDVWSDPCLEFAFKTLTG 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	564
TAIR|locus:2145091	746	MBD13 "methyl-CPG-binding doma	0.602	0.455	0.277	2.2e-35
DICTYBASE|DDB_G0293562	527	DDB_G0293562 [Dictyostelium di	0.618	0.662	0.211	3.3e-07
FB|FBgn0037836	2743	CG14692 [Drosophila melanogast	0.675	0.138	0.220	8.3e-07
UNIPROTKB|F1PHT7	435	DMP1 "Uncharacterized protein"	0.632	0.820	0.221	2.3e-06
UNIPROTKB|E9PTW3	952	Dspp "Dentin sialophosphoprote	0.632	0.375	0.192	1.5e-05
FB|FBgn0036203	1514	Muc68D "Mucin 68D" [Drosophila	0.627	0.233	0.181	4.3e-05
POMBASE|SPAC140.02	500	gar2 "nucleolar protein requir	0.377	0.426	0.225	6e-05
DICTYBASE|DDB_G0291444	447	DDB_G0291444 [Dictyostelium di	0.352	0.445	0.241	0.00018
WB|WBGene00021913	679	cec-8 [Caenorhabditis elegans	0.602	0.500	0.226	0.00025
FB|FBgn0259108	5495	futsch "futsch" [Drosophila me	0.498	0.051	0.226	0.00027

TAIR|locus:2145091 MBD13 "methyl-CPG-binding domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 101/364 (27%), Positives = 169/364 (46%)

Query:    16 RVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRS 74
             +VE+RVRKNG+KDK+I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S
Sbjct:    15 KVEIRVRKNGRKDKVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQS 74

Query:    75 MKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQS 134
              KDA RYVETG IG  A K K+    D ED  DD  N  T  + + ++    + D+  + 
Sbjct:    75 FKDASRYVETGNIGHYARKLKES---DIED--DDSGNGKTVLRLEYVDKRSAD-DVLEKE 128

Query:   135 TKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDS-D 193
               + +V + +        R  +S S+  S   +  ++L        +D  K +  KD  +
Sbjct:   129 KTIDDVRRSK--------RRNLSSSDEHSKNCKMTSDLSIVTSQVLEDLGKKEEVKDPIE 180

Query:   194 KNVLSTPVVVVLPQGQSSDVGEMM-DETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALD 252
             K +++  V     Q ++S   E++ D   N +   + S K  V    R    +   +  +
Sbjct:   181 KQLIAKRVT--RSQTKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKE 238

Query:   253 PTPELKTSNRVRRKQSD--KIEASSTVEAFCSGSQVHLASQQPDQLE--AKPEANCAFDT 308
                +  +  R+ R + +  K E S++V    S     +  +   +L+  AK +     D 
Sbjct:   239 EEEQDSSEKRITRSKVEEKKNELSNSVARRTSKRLAGIELEPTPELKTRAKVQRIVPLDD 298

Query:   309 SKSTEVSSATSEAKH-PSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADK 367
               + E+ + T   +  P  D      K  T  +   P      L +K    ++  +  D 
Sbjct:   299 EPTPELKTRTKVQRVVPPDDEPTPELKTRTKIQRIVPPDDEPTLELKTRTKVQRILPPDD 358

Query:   368 NPSP 371
               +P
Sbjct:   359 ELTP 362

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0008327 "methyl-CpG binding" evidence=ISS

DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 80/378 (21%), Positives = 162/378 (42%)

Query:    96 DDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQST--KLSEVAKDEDALDSAGTR 153
             ++ N ++  LE++K     A KK+K+E + +    +S S+  +  +  K +  +    T+
Sbjct:    87 NNNNNNKRKLEENKKEE--AKKKKKVESSDSSDSSSSDSSSSESEDEKKKKKEIKKVETK 144

Query:   154 ECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDV 213
             + I   E +       ++    +  + KD+ K++ +K   K V +  V     + +SSD 
Sbjct:   145 KPIKKVESSDSSDSDSSDSSSEDEKKKKDNKKVETKKVETKKVETKKVET--KKEESSD- 201

Query:   214 GEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEA 273
              +  D   +++  +S   KKK  D  +   K+    +     E +  N+  +K   K E 
Sbjct:   202 SDSSDSDSSSSESESEDEKKKK-DTKKVEIKKEESESESSESESEDENKDNKKVGTKKEE 260

Query:   274 SSTVEAFCSGSQVHLASQQPD--QLEAKPE----ANCAFDTSKSTEVSSATSEAKHPSGD 327
             SS  ++  S S+     ++ +  ++EAK E    +    ++  S+  SS++SE++     
Sbjct:   261 SSDSDSSSSESESEDEKKKKNNKKVEAKKEESSDSESESESESSSSSSSSSSESESEDEK 320

Query:   328 LNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIA 387
                 S K+ET  +       + +       +IE  +E  K  S        D  S+    
Sbjct:   321 KKKDSKKVETKKEGSSDSESSSESVEDEKMDIEK-VEIKKEES-------SD--SESSSP 370

Query:   388 FAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQA 447
              + ++   E  +   ++    ES+S  SE     E +  KK +++ +E  E+    EE +
Sbjct:   371 ASSESKEEEKMDIEKEETKKEESSSSSSESEE--EQKKSKKEDSDSDESSEDEKKKEESS 428

Query:   448 ANVESKLKTDEKLENPLD 465
             ++ ES+   DEK +   D
Sbjct:   429 SSSESE---DEKKKEDSD 443

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037836 CG14692 [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 92/418 (22%), Positives = 174/418 (41%)

Query:    96 DDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVA---KDEDALD---S 149
             D+ +  E++     D  P++ K++   +  T +     ST L E     K+  +LD   S
Sbjct:  1103 DEKSSSEKEKSTSLDEKPSSEKEKSTSLDETPSSEKENSTSLDEKPSPEKESTSLDEKPS 1162

Query:   150 AGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQ 209
             +GT +  S  E +S + E  T L     SE + S  ++ R  S+K   ++ V    P+ +
Sbjct:  1163 SGTEKSTSLDEKSSSEKEKSTSLDEKPSSEKEKSTSLNERPSSEKENSTSLVENPSPEKE 1222

Query:   210 SSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSD 269
             S+     +DE  ++   KS S  +     P    ++   L   P+ E + S     K S 
Sbjct:  1223 STS----LDEKPSSGTEKSTSLDEN----PSSEKEKSTSLNERPSSEKENSTSQDEKPSS 1274

Query:   270 KIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLN 329
             + E S++++   S S+   ++    +  ++ E + + D + S+E   +TS  + PS +  
Sbjct:  1275 ETEKSTSLDEKPS-SEKEKSTSLDGKPSSEKEKSTSLDENPSSEKEKSTSLNERPSSEKE 1333

Query:   330 ASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSP-------LIDLPFGDLLS 382
              S+  +E    +  P+  +  L  K     E     D+NPS        L + P  +  +
Sbjct:  1334 NSTSLVE----NPSPEKESTSLDEKPSSGTEKSTSLDENPSSEKEKSTSLNERPSSEKEN 1389

Query:   383 D------PCIAFAIKTLTGETFETSSDK-EVSLESNSGKSEGFAFLEGQAGKKRENEGEE 435
                    P       TL  +  +   D  +VS + +   S+G A +         N+GE 
Sbjct:  1390 STSQDEKPSSEKEKSTLLDKNTDLMRDLIQVSQKVDEEMSKGKAAI-AVVDLPDINKGES 1448

Query:   436 KQENLAT--SEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVG 491
                 L    S ++  +++++L TD++   P +L       +P  +  I+T T  + VG
Sbjct:  1449 VNSPLEKKPSSQELEDIQAELSTDKETGEPYNLSAEKHKVEPISKKTIET-TDVVDVG 1505

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0032027 "myosin light chain binding" evidence=RCA

UNIPROTKB|F1PHT7 DMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 88/398 (22%), Positives = 167/398 (41%)

Query:    85 GEIGRLAYKPKDDGNQDEEDLEDDK----DNSPTATKKQ--KLEVTGTETDITS-QSTKL 137
             G + R   K  DD + DE+D  DD     DN P   ++Q  K  +   E    S QS + 
Sbjct:     6 GGLSRSGGKEGDDKDDDEDDSGDDTFGDDDNGPGPEERQGGKSRLKSNEDSADSTQSRED 65

Query:   138 SEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSE-------AKDSDKMDYRK 190
             S    ++ A D+      + + +  +   E G  ++ S   E         DS   D  +
Sbjct:    66 SPSLGEDSAQDTTSESRDLDNEDEMNSSPERGDSVQESESKEHWVGGGSEGDSSHGDGSE 125

Query:   191 DSDKNVLST-PVVVVLPQGQS--SDVGEMMDETMNTTLGKSMSRKK---KVFDLPRRASK 244
               D+ + +  P  +   +G S  +      +E+   +  ++ ++     +  + PRR   
Sbjct:   126 FGDEEMQNDDPDTIRNERGNSRMNSASVKSEESKGNSDEQASTQDSGDSQSMEYPRRKIF 185

Query:   245 RLAGLAL-DPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEAN 303
             R + ++  D   EL  SN +   +SD  E +++ E   S S+ +  S+  ++ E   E  
Sbjct:   186 RKSRISEEDDIGELDDSNTMEEVKSDSTENANSKETGLSQSRENSESESVEESE---ENQ 242

Query:   304 CAFDTSKSTEVSSATS-EAKHPSGDLNASSGK-IETGCKSDQPQGCAVDLTMKHPDNIET 361
                D+    + SS +S E   PS + ++ S + + T  + D P     D T  H D  ++
Sbjct:   243 SQEDSQNIQDPSSESSQEVDLPSQENSSESQEEVVTESRGDNP-----DNTTSHSDQEDS 297

Query:   362 DIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFL 421
             D  +++N    ++ P     S+     A  + + E+  +S +   S E NS   E     
Sbjct:   298 D-SSEENS---LNKPSSSE-SESTEEQA-DSESNESLRSSEESPESTEENSSSQEDLQ-- 349

Query:   422 EGQAGKKRENEGEEKQENLATSEEQAANVE--SKLKTD 457
                A  + ++E  + +++  + E+ A++ +  SKLK D
Sbjct:   350 SHSASAESQSEESQSEQDSQSEEDDASDSQDSSKLKED 387

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0001503 "ossification" evidence=IEA

UNIPROTKB|E9PTW3 Dspp "Dentin sialophosphoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 70/364 (19%), Positives = 141/364 (38%)

Query:    99 NQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISH 158
             + D  D  D  D+S + +         +++  +S S++ S+ +   D+ DS+ + E  S 
Sbjct:   584 SSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDSSESSDSSDSSDSSDSSESSES-SE 642

Query:   159 SEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMD 218
             S  +S   ++      S  SE+ DS       DSD +  S+          SSD  +  D
Sbjct:   643 SSDSSDSSDSSDSSDSSESSESSDSSDSSDSSDSDSSD-SSDSSDSSDSSDSSDSSDSSD 701

Query:   219 ETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVE 278
              + ++    S S      D    +    +  + D +    +SN      SD  ++S + +
Sbjct:   702 SSDSSDSSDSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSDSSDSSDSSDSSDSSD 761

Query:   279 AFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVS-SATSEAKHPSGDLNASSGKIET 337
             +  S      +S   D  ++   ++ + D+S S++ S S+ S     S D + SS   ++
Sbjct:   762 SSDSSDSSD-SSDSSDSSDSSDSSDSS-DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 819

Query:   338 GCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGET 397
                SD     + D +     +  +D     + S   D       SD   +    +  G++
Sbjct:   820 SDSSDSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDGDSSDGDS 879

Query:   398 FETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTD 457
               + SD   S  SNS  S+     +  +    +++ + K     +S++ + +      +D
Sbjct:   880 --SDSDSSDSDSSNSSDSDSSDSSDSSSSDSSDSDSDSKDSTSDSSDDDSKSGNGNSDSD 937

Query:   458 EKLE 461
                E
Sbjct:   938 SDSE 941

GO:0071460 "cellular response to cell-matrix adhesion" evidence=IEA

FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 67/370 (18%), Positives = 141/370 (38%)

Query:    97 DGNQDEEDLEDDKDN-SPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTREC 155
             + +QD    E      SP +T+        + T+ +  ST     +  ED L +  + E 
Sbjct:   534 ESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEA 593

Query:   156 ISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGE 215
              + S  T    ++ T+   S+ +E   S +      ++ +   +       +  SS    
Sbjct:   594 TNESSSTESSQDSTTQ-ESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESP 652

Query:   216 MMDETMNTTLGKSMSRKKKVFDLPRRASKRLAG-LALDPTPELKTSNRVRRKQSDKIEAS 274
             +  E  +T   +S S +       + +S    G L+ +P+ E   S+     Q    + S
Sbjct:   653 LSTEP-STEANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQES 711

Query:   275 STVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAK---HPSGDLNAS 331
             S      S S+  L+++     EA   ++       +T+ SS+++E+     PS + N S
Sbjct:   712 S------SSSEGPLSTES--STEANESSSTESSQDSTTQESSSSTESPLSTEPSTEANES 763

Query:   332 SGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIK 391
             S    +   + Q    + +  +    + E +  +    S           S+  ++    
Sbjct:   764 SSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESS 823

Query:   392 TLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVE 451
             T   E+  T S ++ + + +S  +E     E       E+   E  ++ +T++E +++ E
Sbjct:   824 TEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATYESSSTESSQD-STTQESSSSTE 882

Query:   452 SKLKTDEKLE 461
               L T+   E
Sbjct:   883 GPLSTESSTE 892

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

POMBASE|SPAC140.02 gar2 "nucleolar protein required for rRNA processing" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 129 (50.5 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 51/226 (22%), Positives = 103/226 (45%)

Query:   227 KSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQV 286
             K ++++    D+  + SK+ A  A  P P  K S + ++K   K E+SS  E+  S S+ 
Sbjct:    38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPS-KKSVKKQKKSKKKEESSSESESESSSSES 96

Query:   287 HLASQQPDQLEAKPEANCAFDTSKSTE--VSSATSEAKHPSGDLNASSGKIETGCKSDQP 344
               +S + +   ++ E++ +  +S  +E  V   T E K  S + ++SS       +S++ 
Sbjct:    97 ESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSS-------ESEEE 149

Query:   345 QGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDK 404
             +   V +  K   + ++  E+  + S            +  +    +   G + E+SSD 
Sbjct:   150 EEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSS-ESSSDS 208

Query:   405 EVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANV 450
             E S +S+S   +  +  + ++    E+E + K E    SEE+ A +
Sbjct:   209 ESSSDSSSESGDSDSSSDSESESSSEDEKKRKAE--PASEERPAKI 252

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0006364 "rRNA processing" evidence=IMP

GO:0007000 "nucleolus organization" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IMP

DICTYBASE|DDB_G0291444 DDB_G0291444 [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 50/207 (24%), Positives = 88/207 (42%)

Query:    97 DGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSE-VAKDEDALDSAGTREC 155
             D   D  D ED+K+      KK +   + +E+D  S S+  SE   K E   D + + E 
Sbjct:    90 DSESDSSDSEDEKEKEMKVDKKTEDSSSSSESDTESSSSSESEDEKKKEKESDDSSSSES 149

Query:   156 ISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGE 215
              S S  +  + E+ +E   S+ SE++D  K +    SD          V    +SSD   
Sbjct:   150 ESDSSSSESESES-SESSSSSESESEDEKKKESSDSSDSESEDEKKKKV----ESSDSSS 204

Query:   216 MMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR-KQSDKIEAS 274
                E+ +++  +S   KKK  +    +S      +   +    +S+     ++  K+E S
Sbjct:   205 SESESSDSSDSESEDEKKKKVESSDSSSSESESSSSSSSDSSDSSDSESEDEKKKKVEKS 264

Query:   275 STVEAFCSGSQVHLASQQPDQLEAKPE 301
             S  E   S S+   +  + D+ ++K E
Sbjct:   265 SDKET-SSESESEDSDDEKDKKKSKKE 290

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00021913 cec-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 87/384 (22%), Positives = 162/384 (42%)

Query:    96 DDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTREC 155
             D  ++DEE+ +  K  S    KK K E +  E   +    ++ EV K+  +      +  
Sbjct:   307 DSSSEDEEEEKSSKKRS----KKSKKE-SDEEQQASDSEEEVVEVKKNSKSPKKTPKKTA 361

Query:   156 ISH-SEHTSG--QVEAGTELRGSNLSEAK----DSDKMDYRKDSDKNVLSTPVVVVLPQG 208
             +   SE +SG  + E   + + S +++ K     SD+ +  ++S K    +P        
Sbjct:   362 VKEESEESSGDEEEEVVKKKKSSKINKRKAKESSSDEEEEVEESPKKKTKSPRK---SSK 418

Query:   209 QSSDVGEMMDETMNTTLGKSM--SRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRK 266
             +S+   E  +E+ +    + +  S KKKV   P+++SK+ A       P          +
Sbjct:   419 KSAAKEESEEESSDNEEEEEVDYSPKKKVKS-PKKSSKKPAAKVESEEPSDNEEEEEEVE 477

Query:   267 QSDKIEASSTVEAFCSGSQVHLAS------QQPDQLEAKPEANCAFDTSKSTEVSSATSE 320
             +S  I+   T   +   S   + S      ++ +++E  P+        KS++ S+A  E
Sbjct:   478 ESP-IKKDKTPRKYSRKSAAKVESTESSGNEEEEEVEESPKKK-GKTPRKSSKKSAAVEE 535

Query:   321 AKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEAD--KNPSPLIDLPFG 378
             + +   D+  S  K  +  KS + +  A + + +  DN   ++E    KN   L   P  
Sbjct:   536 SDNEEEDVEESPKKRTSPRKSSKKRA-AKEESEESSDNEVEEVEDSPKKNDKTLRKSP-- 592

Query:   379 DLLSDPCIAFAIKTLTGETFETSSDKEVSLES--NSGKSEGFAFLEGQAGKKRENEGEEK 436
                  P    A K  + E+F    ++EV  ES    GK+   +  +  A ++ E   +++
Sbjct:   593 ---RKP----AAKVESEESFGNEEEEEVE-ESPKKKGKTPRKSSKKSAAKEESEESSDDE 644

Query:   437 QENLATSEEQAANVES--KLKTDE 458
             +E  A  E   ++ ES  K KTDE
Sbjct:   645 EEEQA-EETNGSHTESPTKSKTDE 667

GO:0005634 "nucleus" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

FB|FBgn0259108 futsch "futsch" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 70/309 (22%), Positives = 130/309 (42%)

Query:    76 KDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKL-EVTGTETDITSQS 134
             K+  R     E   LA K         E ++D+ + S   ++++ + E +   +   S+ 
Sbjct:  3826 KEESRRESVAEKSSLASKKASRPASVAESVKDEAEKSKEESRRESVAEKSPLASKEASRP 3885

Query:   135 TKLSEVAKDE-DALDSAGTRECISH-SEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDS 192
               ++E  KDE +       RE ++  S   S +    T +  S   EA D  K + R++S
Sbjct:  3886 ASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDEA-DKSKEESRRES 3944

Query:   193 DKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFD---LPRRASKRLAGL 249
                   +P+  +     +S    + DET  +   K  SR++ V +   LP + + R   +
Sbjct:  3945 GAE--KSPLASMEASRPTSVAESVKDETEKS---KEESRRESVTEKSPLPSKEASRPTSV 3999

Query:   250 ALDPTPELKTSNRVRRKQS--DKI-----EASSTVEAFCSGSQVHLASQQPDQLEAKPEA 302
             A     E + S    R++S  +K      E+S       S       ++Q  + E+ PE+
Sbjct:  4000 AESVKDEAEKSKEESRRESVAEKSPLASKESSRPASVAESIKDEAEGTKQESRRESMPES 4059

Query:   303 NCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTM--KHPDNIE 360
               A ++ K  + S A+ E   P  D    S K ET    ++P+G A+D +     P+++ 
Sbjct:  4060 GKA-ESIKGDQSSLASKETSRP--DSVVESVKDET----EKPEGSAIDKSQVASRPESVA 4112

Query:   361 TDIEADKNP 369
                + +K+P
Sbjct:  4113 VSAKDEKSP 4121

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0005875 "microtubule associated complex" evidence=ISS;IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007017 "microtubule-based process" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048749 "compound eye development" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007528 "neuromuscular junction development" evidence=NAS

GO:0005874 "microtubule" evidence=IEA

GO:0008088 "axon cargo transport" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0060052 "neurofilament cytoskeleton organization" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MBD912 methyl binding domain protein (763 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	564
cd01396	77	cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and M	5e-09
cd00122	62	cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8	6e-09
smart00391	77	smart00391, MBD, Methyl-CpG binding domain	2e-05
pfam01429	75	pfam01429, MBD, Methyl-CpG binding domain	3e-05

>gnl|CDD|238690 cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 40 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 96
          LPPGW +E+   K+G   + D YYI P +G  FRS  +  RY+E  + G  +    D
Sbjct: 7  LPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLE--KNGPTSLDLSD 60

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. Length = 77

>gnl|CDD|238069 cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 90
          D LPPGW +E+ + K+G   + D YY  P  G   RS  +  RY+E      L
Sbjct: 4  DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKTGPSSL 55

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family. Length = 62

>gnl|CDD|128673 smart00391, MBD, Methyl-CpG binding domain

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 40 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84
          LP GW +E K  K+GR   + D YYI P  G   RS  +  RY+  
Sbjct: 8  LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHK 52

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain. Length = 77

>gnl|CDD|216497 pfam01429, MBD, Methyl-CpG binding domain

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 40 LPPGWTKEIKVTKTGRKVRR-DPYYIDPASGYIFRSMKDAVRYVE 83
          LPPGW +E +  K+G    + D YY  P +G  FRS  + +RY+E
Sbjct: 10 LPPGWRREERQRKSGSSAGKVDVYYYSP-TGKKFRSKSELIRYLE 53

The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	564
cd01396	77	MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me	99.33
PF01429	77	MBD: Methyl-CpG binding domain; InterPro: IPR00173	99.29
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	99.2
smart00391	77	MBD Methyl-CpG binding domain. Methyl-CpG binding	98.89
cd01397	73	HAT_MBD Methyl-CpG binding domains (MBD) present i	98.69
KOG4161	272	consensus Methyl-CpG binding transcription regulat	97.93
cd01395	60	HMT_MBD Methyl-CpG binding domains (MBD) present i	96.63
PF01429	77	MBD: Methyl-CpG binding domain; InterPro: IPR00173	93.18
KOG4161	272	consensus Methyl-CpG binding transcription regulat	91.22
cd01396	77	MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me	88.61
KOG1891	271	consensus Proline binding protein WW45 [General fu	88.08
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	86.27

>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

Probab=99.33  E-value=1.9e-12  Score=107.67  Aligned_cols=48  Identities=42%  Similarity=0.800  Sum_probs=43.7

Q ss_pred             CCCCCCCceEEEEEecCCCccccccceeCCCCCceecchHHHHHHHhhC
Q 008463           37 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (564)
Q Consensus        37 ~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG   85 (564)
                      +..||.||.+|+++|++|...++|.||++| +|++|||+++|.+||+..
T Consensus         4 ~~~lp~GW~r~~~~R~~gs~~k~DvyY~sP-~Gkk~RS~~ev~~yL~~~   51 (77)
T cd01396           4 DPRLPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLEKN   51 (77)
T ss_pred             CCCCCCCCEEEEEEecCCCCCcceEEEECC-CCCEEECHHHHHHHHHhC
Confidence            445999999999999999777999999999 589999999999999874

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.

>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer

Probab=99.29  E-value=2.8e-12  Score=105.32  Aligned_cols=50  Identities=40%  Similarity=0.777  Sum_probs=43.7

Q ss_pred             CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhhCC
Q 008463           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETGE   86 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG~   86 (564)
                      .+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+++|.+||+.+.
T Consensus         7 ~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP-~Gk~~RS~~eV~~yL~~~~   57 (77)
T PF01429_consen    7 LDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP-CGKRFRSKKEVVRYLKENP   57 (77)
T ss_dssp             EBTTSTTT-EEEEEESSSSTTTTSEEEEEEET-TSEEESSHHHHHHHHTTSS
T ss_pred             ccCCCCCCCEEEEEEecCCCcCCceEEEEECC-CCCEEeCHHHHHHHHHhCC
Confidence            45689999999999999886 46899999999 9999999999999998776

Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=99.20  E-value=1.6e-11  Score=97.26  Aligned_cols=47  Identities=40%  Similarity=0.834  Sum_probs=43.1

Q ss_pred             CCCCCCceEEEEEecCCCccccccceeCCCCCceecchHHHHHHHhhC
Q 008463           38 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (564)
Q Consensus        38 egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG   85 (564)
                      .+||.||.+|+++|+.|..+++|.||+.| +|++|||+.+|.+||...
T Consensus         4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP-~Gk~~Rs~~ev~~yL~~~   50 (62)
T cd00122           4 DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKT   50 (62)
T ss_pred             CCCCCCeEEEEEEcCCCCCCcceEEEECC-CCceecCHHHHHHHHHhC
Confidence            47899999999999999777999999999 599999999999999765

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

>smart00391 MBD Methyl-CpG binding domain

Probab=98.89  E-value=1.7e-09  Score=90.04  Aligned_cols=44  Identities=43%  Similarity=0.797  Sum_probs=40.9

Q ss_pred             CCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           40 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        40 LP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      ||.||.+++++|+.|. ..+.|.||+.| +|++|||+.||.+||..
T Consensus         8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP-~GkklRs~~ev~~YL~~   52 (77)
T smart00391        8 LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHK   52 (77)
T ss_pred             CCCCcEEEEEEecCCCCCCcccEEEECC-CCCeeeCHHHHHHHHHh
Confidence            9999999999999984 66899999999 89999999999999964

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain

>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity

Probab=98.69  E-value=1.9e-08  Score=84.25  Aligned_cols=45  Identities=22%  Similarity=0.602  Sum_probs=42.4

Q ss_pred             CCCCCceEEEEEecCCCccccccceeCCCCCceecchHHHHHHHhh
Q 008463           39 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        39 gLP~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      -||-||..|+++|+.|.+++.|.||+.| +|++|||+.||.+||..
T Consensus         5 Pl~~GW~Re~vir~~~~~~~~dV~Y~aP-cGKklRs~~ev~~yL~~   49 (73)
T cd01397           5 PLELGWRRETRIRGLGGRIQGEVAYYAP-CGKKLRQYPEVIKYLSK   49 (73)
T ss_pred             CCCCCceeEEEeccCCCCccceEEEECC-CCcccccHHHHHHHHHh
Confidence            5899999999999999888999999999 79999999999999974

The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.

>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]

Probab=97.93  E-value=4.5e-06  Score=83.52  Aligned_cols=49  Identities=41%  Similarity=0.716  Sum_probs=44.7

Q ss_pred             cCCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           35 DTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        35 ~~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      ..|..||+||.++++.|++|. .++.|.||+.| .|.+|||+.+..+||+.
T Consensus        14 ~~c~~lp~GW~~~~~~r~~~~~~g~~dv~~~sp-~g~~frsk~~l~~~~~~   63 (272)
T KOG4161|consen   14 SDCPALPPGWTREEVQRSSGLSAGKSDVYYISP-SGKKFRSKPQLARYLGK   63 (272)
T ss_pred             ccCCCCCCCcchhhhcccCCCcccccceEEeCC-cccccccccHHHHHhcc
Confidence            478899999999999999987 55999999999 89999999999999953

>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression

Probab=96.63  E-value=0.0019  Score=52.84  Aligned_cols=41  Identities=27%  Similarity=0.528  Sum_probs=36.3

Q ss_pred             CCceEEEEEecCCCccccccceeCCCCCceecchHHHHHHHhh
Q 008463           42 PGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        42 ~GWvkE~r~RKsG~~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      =||......|+.| +++.+.+|.-| .|++.|++.+|++||..
T Consensus         8 ~gw~R~~~~~~~~-~~k~~V~Y~aP-CGr~Lr~~~EV~~YL~~   48 (60)
T cd01395           8 CGFQRMKYRARVG-KVKKHVIYKAP-CGRSLRNMSEVHRYLRE   48 (60)
T ss_pred             cCeEEEEEeccCC-CcccceEEECC-cchhhhcHHHHHHHHHh
Confidence            5999999888777 56889999999 79999999999999953

SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.

>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer

Probab=93.18  E-value=0.061  Score=44.66  Aligned_cols=23  Identities=48%  Similarity=0.663  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCeEEEEEEccCCcc
Q 008463            5 ENSDELLPDGCRVEVRVRKNGKK   27 (564)
Q Consensus         5 e~s~dWLPDGW~vEvr~~knG~k   27 (564)
                      ...+-|||+||.+|+.++++|+.
T Consensus         5 ~~~~~~Lp~GW~re~~~R~~g~~   27 (77)
T PF01429_consen    5 SPLDPPLPDGWKREVVVRKSGSS   27 (77)
T ss_dssp             ECEBTTSTTT-EEEEEESSSSTT
T ss_pred             ccccCCCCCCCEEEEEEecCCCc
Confidence            45678999999999999999743

Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.

>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]

Probab=91.22  E-value=0.044  Score=55.50  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=43.8

Q ss_pred             CCCCCCCCceEEEEEecCCCcc-ccccce--eCCCCCceecchHHHHHHHhhCCcc
Q 008463           36 TPDGLPPGWTKEIKVTKTGRKV-RRDPYY--IDPASGYIFRSMKDAVRYVETGEIG   88 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~~i-r~DkYY--iDPvsGy~FRSkkdV~RYLeTG~I~   88 (564)
                      +-.++++.|+.+..+|+.+..| -.|.||  .++..+..||.++..+-|++-|..-
T Consensus       104 ~~~~~~P~~~t~~~~r~~~t~i~~~~~~~~~r~~~~~~~~~~q~~ql~~~~~~~~l  159 (272)
T KOG4161|consen  104 DLNLAIPIRATSCIFRRPGTKIRSHDKYEVKREPKAEDPFREQKKQLFWLERLQDL  159 (272)
T ss_pred             ccccCCchhhhhccccccceeeccccchhhhhccccccccccccceEEEecccccc
Confidence            3356999999999999999988 567888  7888889999999988777776643

>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

Probab=88.61  E-value=0.55  Score=39.73  Aligned_cols=17  Identities=41%  Similarity=0.679  Sum_probs=15.4

Q ss_pred             CC-CCCCeEEEEEEccCC
Q 008463            9 EL-LPDGCRVEVRVRKNG   25 (564)
Q Consensus         9 dW-LPDGW~vEvr~~knG   25 (564)
                      +| ||.||..|+..+++|
T Consensus         4 ~~~lp~GW~r~~~~R~~g   21 (77)
T cd01396           4 DPRLPPGWKRELVPRKSG   21 (77)
T ss_pred             CCCCCCCCEEEEEEecCC
Confidence            44 999999999999997

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.

>KOG1891 consensus Proline binding protein WW45 [General function prediction only]

Probab=88.08  E-value=0.45  Score=48.50  Aligned_cols=55  Identities=31%  Similarity=0.587  Sum_probs=35.2

Q ss_pred             CCCCCCCCCeEEEEEEccCCcceee--------EeeecCCCCCCCCceEEEEEecCCCccccccceeCCCCC
Q 008463            6 NSDELLPDGCRVEVRVRKNGKKDKI--------IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASG   69 (564)
Q Consensus         6 ~s~dWLPDGW~vEvr~~knG~k~K~--------viEk~~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvsG   69 (564)
                      ..|-=||+||-||--.  -|+||-|        -+-....++||+||.+=.-+-       .-.||+|-.++
T Consensus        89 sedlPLPpgWav~~T~--~grkYYIDHn~~tTHW~HPlerEgLppGW~rv~s~e-------~GtyY~~~~~k  151 (271)
T KOG1891|consen   89 SEDLPLPPGWAVEFTT--EGRKYYIDHNNRTTHWVHPLEREGLPPGWKRVFSPE-------KGTYYYHEEMK  151 (271)
T ss_pred             cccCCCCCCcceeeEe--cCceeEeecCCCcccccChhhhccCCcchhhccccc-------cceeeeecccc
Confidence            3444599999999765  4788765        122346789999997654211       23567665433

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=86.27  E-value=1.2  Score=35.79  Aligned_cols=19  Identities=37%  Similarity=0.651  Sum_probs=17.2

Q ss_pred             CCCCCCCCeEEEEEEccCC
Q 008463            7 SDELLPDGCRVEVRVRKNG   25 (564)
Q Consensus         7 s~dWLPDGW~vEvr~~knG   25 (564)
                      ..+|||.||..|+..+++|
T Consensus         2 l~~P~p~GW~R~~~~r~~g   20 (62)
T cd00122           2 LRDPLPPGWKRELVIRKSG   20 (62)
T ss_pred             CCCCCCCCeEEEEEEcCCC
Confidence            4679999999999999997

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	564
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	1e-07
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	5e-06
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	1e-05
1ub1_A	133	MECP2, attachment region binding protein; chicken	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} Length = 72

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 33 EKDTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 85
           +     LPPGW KE  + K+G    + D YY  P SG  FRS     RY+   
Sbjct: 6  GRTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGNA 58

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A Length = 97

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 40 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 84
          LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + Y E 
Sbjct: 24 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK 68

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* Length = 75

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 32 IEKDTPD--GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVE 83
          + +D  D   L PGW +     K+G    R D YY  P +G   RS  +  RY+ 
Sbjct: 1  MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLG 54

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 Length = 133

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 1  MGDRENSDELLPDGCRVEVRVRKNGKKDKIIIEKDTPDGLPPGWTKEIKVTKTGR-KVRR 59
          MG   +             + R++  +D+  +  D    LP GWT+++K  K+GR   + 
Sbjct: 1  MGHHHHHHAPAVPEASASPKQRRSIIRDRGPMYDDPT--LPEGWTRKLKQRKSGRSAGKY 58

Query: 60 DPYYIDPASGYIFRSMKDAVRYVE 83
          D Y I+P  G  FRS  + + Y E
Sbjct: 59 DVYLINP-QGKAFRSKVELIAYFE 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 25/135 (18%)

Query: 176 NLSEAKDSDKMDY--------RKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGK 227
           N+  AK  +  +         R     + LS      +     S      DE   + L K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVK-SLLLK 309

Query: 228 SMSRKKKVFDLPRRASK----RLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSG 283
            +    +  DLPR        RL+ +A      L T +  +    DK+  ++ +E+    
Sbjct: 310 YLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESS--- 362

Query: 284 SQVHLASQQPDQLEA 298
               L   +P +   
Sbjct: 363 ----LNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	564
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	99.3
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	99.29
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	99.24
3vxv_A	69	Methyl-CPG-binding domain protein 4; methyl CPG bi	99.19
1ub1_A	133	MECP2, attachment region binding protein; chicken	99.07
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	95.85
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	94.83
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	89.4
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	88.15
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	83.39
1ub1_A	133	MECP2, attachment region binding protein; chicken	81.75

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=99.30  E-value=1.5e-12  Score=106.35  Aligned_cols=48  Identities=42%  Similarity=0.749  Sum_probs=44.5

Q ss_pred             CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      .+..||+||.+|+++|++|. ..+.|.||++| +|++|||+.+|.+||+.
T Consensus         9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~   57 (72)
T 2ky8_A            9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGN   57 (72)
T ss_dssp             ECSSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTT
T ss_pred             cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhc
Confidence            56699999999999999885 66899999999 99999999999999977

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*

Probab=99.29  E-value=1.1e-12  Score=108.17  Aligned_cols=48  Identities=33%  Similarity=0.589  Sum_probs=43.8

Q ss_pred             CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      .+..||+||.+|+++|++|. +.+.|.||++| +|++|||+.+|.|||+.
T Consensus         7 ~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~   55 (75)
T 1d9n_A            7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP   55 (75)
T ss_dssp             ECTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT
T ss_pred             cCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc
Confidence            56789999999999999985 46899999999 99999999999999963

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=99.24  E-value=5.1e-12  Score=108.88  Aligned_cols=48  Identities=40%  Similarity=0.743  Sum_probs=43.9

Q ss_pred             CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      .+.+||+||.+|+++|++|. ..+.|.||++| +|++|||+.+|.+||+.
T Consensus        20 ~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~   68 (97)
T 3c2i_A           20 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK   68 (97)
T ss_dssp             CCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHH
Confidence            56789999999999999986 55899999999 89999999999999963

>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*

Probab=99.19  E-value=1.4e-11  Score=100.04  Aligned_cols=49  Identities=29%  Similarity=0.599  Sum_probs=42.8

Q ss_pred             CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhhC
Q 008463           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG   85 (564)
                      .+..||.||.+|+++|++|. ..+.|.||+.|. |++|||+.+|.+||+.-
T Consensus         2 ~~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~-Gkk~RSk~ev~~yL~~~   51 (69)
T 3vxv_A            2 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISPQ-GLKFRSKRSLANYLLKN   51 (69)
T ss_dssp             --CCSCTTCEEEEEECCSSTTTTCEEEEEECTT-SCEECSHHHHHHHHHHH
T ss_pred             CCCcCCCCCEEEEEEeccCCCCCcceEEEEcCC-CCEeeCHHHHHHHHHhC
Confidence            36789999999999999885 568999999995 99999999999999763

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=99.07  E-value=7.6e-11  Score=106.53  Aligned_cols=62  Identities=34%  Similarity=0.594  Sum_probs=50.3

Q ss_pred             ccCCcceeeE-eee--cCCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           22 RKNGKKDKII-IEK--DTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        22 ~knG~k~K~v-iEk--~~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      +..++..++| ++.  ..+.+||.||.+|+++|++|. ..+.|.||+.| +|++|||+.+|.+||+.
T Consensus        17 ~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~~   82 (133)
T 1ub1_A           17 ASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEK   82 (133)
T ss_dssp             SCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHTT
T ss_pred             cCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHHH
Confidence            3445555554 333  257789999999999999984 56999999999 69999999999999963

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=95.85  E-value=0.0066  Score=50.26  Aligned_cols=54  Identities=26%  Similarity=0.449  Sum_probs=35.6

Q ss_pred             CCCCCCCeEEEEEEccCCcceee-------Eeeec------------CCCCCCCCceEEEEEecCCCccccccceeCCCC
Q 008463            8 DELLPDGCRVEVRVRKNGKKDKI-------IIEKD------------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS   68 (564)
Q Consensus         8 ~dWLPDGW~vEvr~~knG~k~K~-------viEk~------------~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvs   68 (564)
                      ..=||+||  |+++..+|+.|-|       .-+..            ....||.||....  -.     ...+||+|..|
T Consensus         7 ~~~LP~gW--e~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~--~~-----~G~~Yy~n~~t   77 (90)
T 2kxq_A            7 PPDLPEGY--EQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRN--TA-----TGRVYFVDHNN   77 (90)
T ss_dssp             CCSCCSSC--EEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEE--CT-----TSCEEEEETTT
T ss_pred             CCCCCCCc--EEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEE--CC-----CCCEEEEECCC
Confidence            34599999  5666689998877       11111            1246999998765  22     23579999876


Q ss_pred             Cc
Q 008463           69 GY   70 (564)
Q Consensus        69 Gy   70 (564)
                      +.
T Consensus        78 ~~   79 (90)
T 2kxq_A           78 RT   79 (90)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=94.83  E-value=0.046  Score=45.05  Aligned_cols=56  Identities=21%  Similarity=0.473  Sum_probs=36.6

Q ss_pred             CCCCCCCCCeEEEEEEccCCcceee-------Eeeec----------CCCCCCCCceEEEEEecCCCccccccceeCCCC
Q 008463            6 NSDELLPDGCRVEVRVRKNGKKDKI-------IIEKD----------TPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPAS   68 (564)
Q Consensus         6 ~s~dWLPDGW~vEvr~~knG~k~K~-------viEk~----------~~egLP~GWvkE~r~RKsG~~ir~DkYYiDPvs   68 (564)
                      ....=||+||.+  ++..+|+.|-|       .-+..          ....||.||..-.  -..     ..+||+|..|
T Consensus         8 ~~~~~LP~gWe~--~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~--~~~-----G~~Yy~nh~t   78 (88)
T 1tk7_A            8 DALGPLPDGWEK--KIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRY--TAA-----GERFFVDHNT   78 (88)
T ss_dssp             STTSSSSSSCCE--EEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEE--ETT-----TEEEEEETTT
T ss_pred             CccCCCCCCcEE--EECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEE--CCC-----CCEEEEECCC
Confidence            344459999954  55678998877       11221          1346999998765  222     2479999877


Q ss_pred             Cc
Q 008463           69 GY   70 (564)
Q Consensus        69 Gy   70 (564)
                      +.
T Consensus        79 ~~   80 (88)
T 1tk7_A           79 RR   80 (88)
T ss_dssp             TE
T ss_pred             Cc
Confidence            64

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=89.40  E-value=0.27  Score=42.62  Aligned_cols=20  Identities=35%  Similarity=0.717  Sum_probs=17.2

Q ss_pred             CCCCCCCeEEEEEEccCCcc
Q 008463            8 DELLPDGCRVEVRVRKNGKK   27 (564)
Q Consensus         8 ~dWLPDGW~vEvr~~knG~k   27 (564)
                      +.|||+||..|+..|++|..
T Consensus        21 ~~~lP~GW~re~~~R~~G~s   40 (97)
T 3c2i_A           21 DPTLPEGWTRKLKQRKSGRS   40 (97)
T ss_dssp             CTTSCTTCEEEEEECCSSTT
T ss_pred             CCCCCCCCEEEEEEecCCCC
Confidence            45799999999999999743

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*

Probab=88.15  E-value=0.26  Score=40.66  Aligned_cols=20  Identities=25%  Similarity=0.255  Sum_probs=17.0

Q ss_pred             CCCCCCCCeEEEEEEccCCc
Q 008463            7 SDELLPDGCRVEVRVRKNGK   26 (564)
Q Consensus         7 s~dWLPDGW~vEvr~~knG~   26 (564)
                      -.-+||+||..|++.|++|.
T Consensus         7 ~~p~LP~GW~Re~~~R~~g~   26 (75)
T 1d9n_A            7 DCPALGPGWKRREVFRKSGA   26 (75)
T ss_dssp             ECTTTCSSCEEEECSSSSSC
T ss_pred             cCCCCCCCCEEEEEEecCCC
Confidence            34589999999999999973

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=83.39  E-value=0.61  Score=38.06  Aligned_cols=17  Identities=41%  Similarity=0.636  Sum_probs=15.7

Q ss_pred             CCCCCeEEEEEEccCCc
Q 008463           10 LLPDGCRVEVRVRKNGK   26 (564)
Q Consensus        10 WLPDGW~vEvr~~knG~   26 (564)
                      +||+||..|+..|++|.
T Consensus        12 ~Lp~GW~R~~~~R~~g~   28 (72)
T 2ky8_A           12 ALPPGWKKEEVIRKSGL   28 (72)
T ss_dssp             SSCTTCEEEEEECCSST
T ss_pred             CCCCCCEEEEEEecCCC
Confidence            89999999999999874

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=81.75  E-value=1.5  Score=39.99  Aligned_cols=20  Identities=35%  Similarity=0.717  Sum_probs=17.4

Q ss_pred             CCCCCCCeEEEEEEccCCcc
Q 008463            8 DELLPDGCRVEVRVRKNGKK   27 (564)
Q Consensus         8 ~dWLPDGW~vEvr~~knG~k   27 (564)
                      +.|||+||..|+.+|++|..
T Consensus        35 ~~~LP~GWkRe~~~RksG~S   54 (133)
T 1ub1_A           35 DPTLPEGWTRKLKQRKSGRS   54 (133)
T ss_dssp             CCCBTTBCEEEEEECCCSSS
T ss_pred             CCCCCCCCEEEEEEecCCCC
Confidence            56899999999999999743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	564
d1ig4a_	75	d.10.1.3 (A:) Methylation-dependent transcriptiona	1e-09
d1qk9a_	92	d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2	4e-08

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 33 EKDTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 85
            D P  L PGW +     K+G    R D YY  P +G   RS  +  RY+   
Sbjct: 5  WLDCPA-LGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGPA 56

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 25 GKKDKIIIEKDTPDG---LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVR 80
           ++  II ++        LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + 
Sbjct: 6  KQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIA 64

Query: 81 YVE 83
          Y E
Sbjct: 65 YFE 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	564
d1ig4a_	75	Methylation-dependent transcriptional repressor MB	99.35
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	99.19
d1ig4a_	75	Methylation-dependent transcriptional repressor MB	91.12
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	90.37

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-13  Score=110.57  Aligned_cols=48  Identities=33%  Similarity=0.589  Sum_probs=43.0

Q ss_pred             CCCCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhh
Q 008463           36 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   84 (564)
Q Consensus        36 ~~egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeT   84 (564)
                      .+..||+||.+|+++|++|. +.+.|.||++| +|++||||++|.+||+.
T Consensus         7 ~~p~LP~GW~re~~~Rk~g~~~gk~DvyY~sP-~Gkk~RS~~ev~~yL~~   55 (75)
T d1ig4a_           7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP   55 (75)
T ss_dssp             ECTTTCTTCEEEEECCCSSSSTTCCEEEEECS-SSCEECSHHHHHHHHCS
T ss_pred             cCCCCCCCcEEEEEEEcCCCCCCceeEEEECC-CCCEEeCHHHHHHHhcc
Confidence            35689999999999999885 66899999999 89999999999999953

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.2e-12  Score=106.68  Aligned_cols=47  Identities=40%  Similarity=0.748  Sum_probs=42.5

Q ss_pred             CCCCCCceEEEEEecCCC-ccccccceeCCCCCceecchHHHHHHHhhC
Q 008463           38 DGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG   85 (564)
Q Consensus        38 egLP~GWvkE~r~RKsG~-~ir~DkYYiDPvsGy~FRSkkdV~RYLeTG   85 (564)
                      ..||+||.+|+++|++|. ..+.|.||+.| +|++|||+++|.+||+..
T Consensus        22 p~Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP-~Gkk~RS~~eV~~yL~~~   69 (92)
T d1qk9a_          22 PTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEKV   69 (92)
T ss_dssp             CCSSSSCEEEECCCCCSSSCSCCCEEEEET-TTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEecCCCCCceeeEEEECC-CCCeeecHHHHHHHHHHC
Confidence            359999999999999985 66899999999 899999999999999763

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.044  Score=43.44  Aligned_cols=26  Identities=23%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             CCCCCCCCCCCCCCeEEEEEEccCCc
Q 008463            1 MGDRENSDELLPDGCRVEVRVRKNGK   26 (564)
Q Consensus         1 m~~~e~s~dWLPDGW~vEvr~~knG~   26 (564)
                      |-+.++..-.||+||++|+..|++|.
T Consensus         1 ~~e~~~~~p~LP~GW~re~~~Rk~g~   26 (75)
T d1ig4a_           1 MAEDWLDCPALGPGWKRREVFRKSGA   26 (75)
T ss_dssp             CCCCEEECTTTCTTCEEEEECCCSSS
T ss_pred             CCcccccCCCCCCCcEEEEEEEcCCC
Confidence            45554444479999999999999874

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.058  Score=43.98  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=17.2

Q ss_pred             CCCC-CCCCeEEEEEEccCCcc
Q 008463            7 SDEL-LPDGCRVEVRVRKNGKK   27 (564)
Q Consensus         7 s~dW-LPDGW~vEvr~~knG~k   27 (564)
                      .++| ||+||.+|+..|++|..
T Consensus        19 ~~dp~Lp~GW~r~~~~R~~g~~   40 (92)
T d1qk9a_          19 YDDPTLPEGWTRKLKQRKSGRS   40 (92)
T ss_dssp             SSBCCSSSSCEEEECCCCCSSS
T ss_pred             ccCCCCCCCCEEEEEEecCCCC
Confidence            3455 89999999999998753