Citrus Sinensis ID: 008470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 564 | ||||||
| 356560458 | 538 | PREDICTED: uncharacterized protein LOC10 | 0.943 | 0.988 | 0.672 | 0.0 | |
| 255543661 | 609 | conserved hypothetical protein [Ricinus | 0.953 | 0.883 | 0.688 | 0.0 | |
| 449479964 | 546 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.985 | 0.628 | 0.0 | |
| 42565229 | 548 | uncharacterized protein [Arabidopsis tha | 0.971 | 1.0 | 0.634 | 0.0 | |
| 62320093 | 548 | hypothetical protein [Arabidopsis thalia | 0.969 | 0.998 | 0.634 | 0.0 | |
| 225451525 | 506 | PREDICTED: uncharacterized protein LOC10 | 0.854 | 0.952 | 0.741 | 0.0 | |
| 297818250 | 548 | hypothetical protein ARALYDRAFT_904902 [ | 0.971 | 1.0 | 0.629 | 0.0 | |
| 296082310 | 519 | unnamed protein product [Vitis vinifera] | 0.854 | 0.928 | 0.721 | 0.0 | |
| 356561287 | 554 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.983 | 0.618 | 0.0 | |
| 359491573 | 605 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.925 | 0.635 | 0.0 |
| >gi|356560458|ref|XP_003548509.1| PREDICTED: uncharacterized protein LOC100807268 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/561 (67%), Positives = 453/561 (80%), Gaps = 29/561 (5%)
Query: 1 MKHGGSRRRRLSVQTMLVVFVICSAGVGLLMTMTMLIVRPLDTPPNTSADVFLPVENDVD 60
M++GG R+RR+ +Q LV +C+ GL + ML +RPLD PP T VD
Sbjct: 1 MRYGGGRKRRMLLQPFLV---LCATVTGL--GLFMLALRPLD-PPIT-----------VD 43
Query: 61 SSQLLEETETETESESESETKTSTVSNPKRCATVEEMGEDFK-GSIQEESLKVRKLIQRH 119
+ +E ++ + S + K CA VEEMG+DF+ G + +E+L+VR++I+ H
Sbjct: 44 FPKKIELGDSNSSSLNGGGEKP--------CAAVEEMGKDFEAGVVGKETLRVRRIIEDH 95
Query: 120 FDLNGASRVRNLPPEQFCKHGFVLGKASEAGFGNEMYKILTGAALSVMLNRSLIIGQTRG 179
FDLNGASR+R+LPPEQFC HGFVLGK +EAGFGNEMYK+LT AALS+MLNRSLIIGQTRG
Sbjct: 96 FDLNGASRIRDLPPEQFCSHGFVLGKTAEAGFGNEMYKVLTAAALSIMLNRSLIIGQTRG 155
Query: 180 KYPFGEYISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVMRIDDFEKPPQTNVLCSNWRKW 239
KYPFG+YISYSN +FT+ E+KHLWR+N C KYGR LVMR DDFEKP QTNVLCSNW++W
Sbjct: 156 KYPFGDYISYSNFTFTMNEIKHLWRQNLCESKYGRQLVMRTDDFEKPAQTNVLCSNWKEW 215
Query: 240 EQPIIWFQGTTDAVAAQFFLKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSE 299
+QPIIWFQGTTDAVAAQFFLKN+H +MR AA DLFG P+ L +QPNVFGEL+RVLISPS+
Sbjct: 216 KQPIIWFQGTTDAVAAQFFLKNIHSQMRIAAFDLFGDPQVLGSQPNVFGELLRVLISPSK 275
Query: 300 DVEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSD 359
DVE AV WV+G +PDISLHMRML NRS+RAVQAA+ CI+KV+ S +LTSRPK V+VSD
Sbjct: 276 DVEAAVNWVIGGEENPDISLHMRMLMNRSIRAVQAALHCIKKVIESQHLTSRPKVVVVSD 335
Query: 360 TPSFAKTITPNISEFAEVLYFDYKAFRGNISHDVNRLPSLEFRAKDWGPAPRWVAFVDFF 419
TPS K+I PNISEFA+VLYFDY+ F+GNI LP L+FR KDWGPAPRWVAFVDFF
Sbjct: 336 TPSLVKSIMPNISEFAQVLYFDYEKFKGNIFEG---LPKLDFRVKDWGPAPRWVAFVDFF 392
Query: 420 LASRAKHAVVSGAFRRVGTTYAQLIAALAAANSLGDNSTDLSFSFLSSFQSNLLTGGLRL 479
LASRAK+AVVSGA RRVGTTYAQLIAALAA +LGDNS+ SFSFLSSFQS +LT GL+
Sbjct: 393 LASRAKYAVVSGAHRRVGTTYAQLIAALAATRNLGDNSSSSSFSFLSSFQSTMLTEGLKN 452
Query: 480 QVGWGHVWNRFAGPLSCHHQSHQCAFTPLLPPAWWDGLWESPIPRDINRLAAFGVHLSGF 539
QVGWGHVWNR+AGPLSCH+Q++QCAFTPLLPP WWDGLW+SPIP+DI+RLAA+G+ LSG
Sbjct: 453 QVGWGHVWNRYAGPLSCHNQTNQCAFTPLLPPGWWDGLWQSPIPKDISRLAAYGIKLSGL 512
Query: 540 GTVDENRLQSFCSSKKNSVKT 560
GTVD + LQ++CS++KN +T
Sbjct: 513 GTVDYDSLQNYCSTRKNVERT 533
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543661|ref|XP_002512893.1| conserved hypothetical protein [Ricinus communis] gi|223547904|gb|EEF49396.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449479964|ref|XP_004155761.1| PREDICTED: uncharacterized protein LOC101223762 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|42565229|ref|NP_189331.2| uncharacterized protein [Arabidopsis thaliana] gi|34365753|gb|AAQ65188.1| At3g26950 [Arabidopsis thaliana] gi|51970678|dbj|BAD44031.1| unknown protein [Arabidopsis thaliana] gi|62319798|dbj|BAD93806.1| hypothetical protein [Arabidopsis thaliana] gi|332643728|gb|AEE77249.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|62320093|dbj|BAD94266.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|225451525|ref|XP_002274990.1| PREDICTED: uncharacterized protein LOC100265179 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297818250|ref|XP_002877008.1| hypothetical protein ARALYDRAFT_904902 [Arabidopsis lyrata subsp. lyrata] gi|297322846|gb|EFH53267.1| hypothetical protein ARALYDRAFT_904902 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|296082310|emb|CBI21315.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356561287|ref|XP_003548914.1| PREDICTED: uncharacterized protein LOC100775912 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|359491573|ref|XP_002280586.2| PREDICTED: uncharacterized protein LOC100267986 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 564 | ||||||
| TAIR|locus:2092050 | 548 | AT3G26950 "AT3G26950" [Arabido | 0.971 | 1.0 | 0.597 | 1.9e-179 |
| TAIR|locus:2092050 AT3G26950 "AT3G26950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1742 (618.3 bits), Expect = 1.9e-179, P = 1.9e-179
Identities = 337/564 (59%), Positives = 406/564 (71%)
Query: 1 MKHGGSRRRRLSVQTMLVVFVICSAGVGLLMTMTMLIVRPLDTPPNTSADVFLPVENDVD 60
MK GG+RR+RL +T+L+ V+ G GLL+ L +R +D PN+S F +++D D
Sbjct: 1 MKRGGTRRKRLFGKTILLSSVVFFIGFGLLL----LTLRSVD--PNSS---F--IDDDDD 49
Query: 61 SSQLLXXXXXXXXXXXXXXXXXXXVSNPKRCATVEEMGEDFKGSIQEESLKVRKLIQRHF 120
S+ V K CATVEEMG +F G ++SL+VR +I RHF
Sbjct: 50 ESE----SEEASRWSNSSSIGEAMVDGAKLCATVEEMGSEFDGGFVDQSLRVRDVIHRHF 105
Query: 121 DLNGASRVRNLPPEQFCKHGFVLGKASEAGFGNEMYKILTGAALSVMLNRSLIIGQTRGK 180
+NGAS +R LPPEQFC+HG+VLGK +EAGFGNEMYKILT AALS+MLNRSLIIGQTRGK
Sbjct: 106 QINGASAIRELPPEQFCRHGYVLGKTAEAGFGNEMYKILTSAALSIMLNRSLIIGQTRGK 165
Query: 181 YPFGEYISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVMRIDDFEKPPQTNVLCSNWRKWE 240
YPFG+YI+YSN +FT+ EVKHLWR+NGC+KKY R LVMR+DDFEKP ++NVLCSNW+KWE
Sbjct: 166 YPFGDYIAYSNATFTMSEVKHLWRQNGCVKKYKRRLVMRLDDFEKPAKSNVLCSNWKKWE 225
Query: 241 QPIIWFQGTTDAVAAQFFLKNVHPEMRNAANDLFGHPESLHAQPNVFGELMRVLISPSED 300
+ IIWFQGTTDAVAAQFFLKNVHPEMR AA +LFG + + NVFGELM LISP++D
Sbjct: 226 EAIIWFQGTTDAVAAQFFLKNVHPEMRAAAFELFGEQGNSAPRGNVFGELMMSLISPTKD 285
Query: 301 VEEAVKWVLGNGVDPDISLHMRMLTNRSVRAVQAAVKCIRKVVNSLNLTSRPKTVIVSDT 360
V+EAV WVL DPDIS+HMRML ++SVR ++AA+ C+ K +N L + + P+ VIVSDT
Sbjct: 286 VKEAVDWVLHETGDPDISVHMRMLMSKSVRPMRAAINCLGKAINRLGIPN-PRVVIVSDT 344
Query: 361 PSFAKTITPNISEFAEVLYFDYKAFRGNISHDVNRLPSLEFRAKDWGPAPRWVAFVDFFL 420
PS K I NIS AEVL+FDYK FRG+I+ LP L+FR KDWGPAPRWVAFVDFFL
Sbjct: 345 PSVVKIIKTNISTIAEVLHFDYKLFRGDIAQRGRGLPMLDFRIKDWGPAPRWVAFVDFFL 404
Query: 421 ASRAKHAVVSGAFRRVGTTYXXXXXXXXXXNSLGXXXXXXXXXXXXXXXXXXXXGGLRLQ 480
A RAKHAV+SGA RRVGTTY NSL GL+ Q
Sbjct: 405 ACRAKHAVISGANRRVGTTYAQLVAALAAANSLKDGSSNSSFAFLSSFQSNLLADGLKNQ 464
Query: 481 VGWGHVWNRFAGPLSCHHQSHQCAFTPLLPPAWWDGLWESPIPRDINRLAAFGVHLSGFG 540
VGWGHVWNR+AGPLSC Q +QCAFTPL PP WWDG+W+SPIPRD RLAAFG+ LSGFG
Sbjct: 465 VGWGHVWNRYAGPLSCPKQPNQCAFTPLAPPGWWDGIWQSPIPRDTRRLAAFGIELSGFG 524
Query: 541 TVDENRLQSFCSSKKNSVKTSLII 564
TV+E+R ++CS+KK V T II
Sbjct: 525 TVNEDRFHAYCSAKKEYVSTVTII 548
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 564 515 0.00088 119 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 625 (66 KB)
Total size of DFA: 325 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.65u 0.14s 38.79t Elapsed: 00:00:01
Total cpu time: 38.65u 0.14s 38.79t Elapsed: 00:00:01
Start: Thu May 9 18:29:23 2013 End: Thu May 9 18:29:24 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| AT3G26950 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; Has 17 Blast hits to 17 proteins in 4 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (548 aa) | |||||||
(Arabidopsis thaliana) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 564 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 97.38 | |
| PF01531 | 298 | Glyco_transf_11: Glycosyl transferase family 11; I | 91.19 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=69.56 Aligned_cols=261 Identities=22% Similarity=0.278 Sum_probs=115.8
Q ss_pred CcchhHHHHHHHHHHHHhhccceeeecccCCCCCCcc-----------eeeecceeeHHHHHHHHHHhCchhhcCCceee
Q 008470 150 GFGNEMYKILTGAALSVMLNRSLIIGQTRGKYPFGEY-----------ISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVM 218 (564)
Q Consensus 150 GFGNeMYKiLTaAaLsiMLNRSLIIgqtrg~yPFGdY-----------Isysn~sFT~~EvKHLWr~~~C~~kYgR~L~m 218 (564)
||+|-+-=+..|++++.+|||.||+ |||... |.|++ -|.++.+ .+|-++ ++
T Consensus 9 GfnNQr~~~~~a~~~A~~LnRTLVL------Pp~~~~~~~~~~~~~~~ipf~~-~fD~~~l----------~~~~~~-vi 70 (351)
T PF10250_consen 9 GFNNQRMGFENAVVFAKALNRTLVL------PPFIKHYHWKDQSKQRHIPFSD-FFDVEHL----------RKFLRP-VI 70 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-EEE--------EEEEESSSS----EEEEEHHH-HB-HHHH----------TTTS---EE
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEc------CCccccccccccccccccChhh-hccHHHH----------HHHhhC-ce
Confidence 9999999999999999999999998 444431 22333 4555443 222221 45
Q ss_pred eeccCCC---CCC-------ccccccCccc---cccceEEeccCcc--------hHHhHHHhhccCHHHHHH------HH
Q 008470 219 RIDDFEK---PPQ-------TNVLCSNWRK---WEQPIIWFQGTTD--------AVAAQFFLKNVHPEMRNA------AN 271 (564)
Q Consensus 219 R~Ddfek---P~~-------TNvLCsdW~~---w~qpIIWF~GTtD--------aVa~QffLKNvhp~Mr~A------A~ 271 (564)
.+.+|.. +.. ...-|.+|.+ =..|.-||.+... .....+.+++++|..+.- -.
T Consensus 71 ~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
T PF10250_consen 71 TMEEFLPKHWDEVFRLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPV 150 (351)
T ss_dssp -HHHHHHHHS-GGG-EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SE
T ss_pred ehheeccchhccccchhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhcccccccc
Confidence 5555531 111 1122333332 1112222222211 122334567777777664 23
Q ss_pred hhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhh---cCCCCCCceehhhhhccc--------------chH----
Q 008470 272 DLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVL---GNGVDPDISLHMRMLTNR--------------SVR---- 330 (564)
Q Consensus 272 ~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l---~gg~~PDIslHmRMl~nR--------------s~r---- 330 (564)
..|.....+-. -+..+.-++..+-++++|+++++=.+ ..+..|=|++|+|.-..= +.|
T Consensus 151 i~~~~~~~~~~-~~~~~~~~~r~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~ 229 (351)
T PF10250_consen 151 IAFTGFESRLP-DNYLDRDLQRYLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGK 229 (351)
T ss_dssp EEESS-SS-SS---GGGGGGGGG--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-G
T ss_pred ceeccccccch-hcccCccceEEEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhcc
Confidence 33333322221 12334444668888888887764322 234689999999986110 000
Q ss_pred ---------------HHHHHHHHHHHHHHhcccCCCCeEEEEeCChh-hhhhhccchhhhhhhheecHHhhhccccccCC
Q 008470 331 ---------------AVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPS-FAKTITPNISEFAEVLYFDYKAFRGNISHDVN 394 (564)
Q Consensus 331 ---------------A~~AA~~Ci~k~~~~~hl~~rPrVvvVSDTPs-~vk~i~~~i~efaeVl~FDYk~f~~~~~~~~~ 394 (564)
...-...+|++++... ....|-|-||-.. -.+.+.+-.+.|..+. .+..... . .
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~---~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~---~~~~~~~-~---~ 299 (351)
T PF10250_consen 230 KSINPEKKRRNGCCPSTPQEAKQILRALGKN---NTTVVYIATDEIYGGERRLDPLKNMFPNVV---TKDDLLS-H---E 299 (351)
T ss_dssp GGTT-----HHHHS--HHHHHHHHHHHHHHH---T-SEEEEEESS-----------HHHHHHHH---GGGT--E-E----
T ss_pred ccccchhhhhcCCCCChHHHHHHHHHHhccC---CCCEEEEecCcccccchhHHHHHHHhhhhE---eccccCC-H---H
Confidence 1122345555555443 4457788888732 1233344444444444 1111111 1 1
Q ss_pred CCCCccccccccCCCCchhHHHHHHHhccccceeeecccccccccHHHHHHHHHHhhhc
Q 008470 395 RLPSLEFRAKDWGPAPRWVAFVDFFLASRAKHAVVSGAFRRVGTTYAQLIAALAAANSL 453 (564)
Q Consensus 395 ~~~~ldfR~rDWG~aPRWVAfVDFFLAsrAk~aVVSGAhrRVgTTYAQLiAALAAAn~l 453 (564)
.+..++ + ..+|+||+-++++|.+-|=|. +-|+...|+..=-++..
T Consensus 300 ~~~~~~----~-----~~~a~vD~~i~~~s~~Figt~-----~Stfs~~i~~~R~~~g~ 344 (351)
T PF10250_consen 300 ELEPLN----D-----DQLAMVDQEICSRSDVFIGTC-----GSTFSSNIARERHYRGK 344 (351)
T ss_dssp -S--------------S--HHHHHHHHHHSSEEEE-T-----T-HHHHHHHHHHHHSSS
T ss_pred Hhhhcc----c-----cchhHHHHHHHhcCCEEEecC-----cchhHHHhhcccCcCCC
Confidence 112221 1 679999999999999988665 56787777765555444
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 564 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 84/513 (16%), Positives = 159/513 (30%), Gaps = 143/513 (27%)
Query: 7 RRRRLSVQTMLVVFVICSAGVG--LLMTMTMLIVRPLDTPPNTSADVF-LPVENDVDSSQ 63
R+ L ++ V + G G + L + +F L ++N
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPET 197
Query: 64 LLEETET-ETESESESETKTSTVSNPKRCATVEEMGEDFKGSIQEESLKVRKLIQRH--- 119
+LE + + + +++ SN K + + + + ++ + + L+ +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 120 ------FDLNGASRVRNLPPEQFCKHGFVLGKASEAGFGNEMYKILTGAALSVMLNRSLI 173
F+L+ CK +L + T + +
Sbjct: 256 AKAWNAFNLS-------------CK---IL--------------LTTR-------FKQVT 278
Query: 174 --IGQTRGKYPFGEYISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVMRIDDFEKPPQ--- 228
+ + ++ S ++ T +EVK L L KY L R D P +
Sbjct: 279 DFLSAATTTHISLDHHS---MTLTPDEVKSL------LLKY---LDCRPQDL--PREVLT 324
Query: 229 TNVL--------CSNWR-KWEQPIIWFQGTTDAVAA--QFFLKNVHP-EMRNAANDLFGH 276
TN + W+ W D + + L + P E R + L
Sbjct: 325 TNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 277 PESLHAQPNVFGELMRV-LISPSEDVEEAVKW------VLGNGVDPDISLHMRMLTNRSV 329
P S H + L + DV V V + IS+ L +
Sbjct: 382 PPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 330 RAVQAAVKCIRKVVNSLNLTSRPKTVIVSDTPS------FAKTI---------TPNISEF 374
+ A+ R +V+ N+ PKT D F I ++ F
Sbjct: 439 LENEYALH--RSIVDHYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 375 AEVLYFDYKAFRGNISHD----------VNRLPSLEFRAK---DWGPAP-RWV-AFVDFF 419
+++ D++ I HD +N L L+F D P R V A +DF
Sbjct: 494 -RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 420 LASRAKHAVVSGAFRRVGTTYAQLIAALAAANS 452
+ + ++ + + ++ AL A +
Sbjct: 553 P--KIEENLICSKYTDL----LRI--ALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 564 | |||
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 98.32 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 97.76 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 96.02 | |
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 95.3 |
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=84.17 Aligned_cols=290 Identities=15% Similarity=0.250 Sum_probs=158.9
Q ss_pred hHHHhhhhccccc--chhhhHHHHHHHHHHHhccccccccCCchhhccc-ccccccc-cccCcchhHHHHHHHHHHHHhh
Q 008470 93 TVEEMGEDFKGSI--QEESLKVRKLIQRHFDLNGASRVRNLPPEQFCKH-GFVLGKA-SEAGFGNEMYKILTGAALSVML 168 (564)
Q Consensus 93 tvEeMGe~~~g~~--~~~sLRvR~~I~~hf~l~GA~rVR~LP~~eFC~~-gFVlGka-sEaGFGNeMYKiLTaAaLsiML 168 (564)
..|.|++...... .++.+.+.+++|+.+..|= -|+ -|.. .|++=+- ...|||+.|.-++.+..+|+.+
T Consensus 104 ~~~~l~~~~g~~~~r~~~~~~lt~~vq~~i~~~Q------nP~--~Cs~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~ 175 (526)
T 2de0_X 104 DLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQ------NPK--DCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGT 175 (526)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH------CCS--CGGGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhc------CCC--cCCCCCEEEEEecCCCchHHHHHHHHHHHHHHHhh
Confidence 4567777665444 2677777777777655442 122 4554 5665554 5799999999999999999999
Q ss_pred ccceeeecccCCCCCCcceeeecceeeHHHHHHHHHHhCchhhcCCceeeeeccCCCCCCccccccCccccccceEEecc
Q 008470 169 NRSLIIGQTRGKYPFGEYISYSNVSFTLEEVKHLWRRNGCLKKYGRHLVMRIDDFEKPPQTNVLCSNWRKWEQPIIWFQG 248 (564)
Q Consensus 169 NRSLIIgqtrg~yPFGdYIsysn~sFT~~EvKHLWr~~~C~~kYgR~L~mR~DdfekP~~TNvLCsdW~~w~qpIIWF~G 248 (564)
||.|||-.+...|.-|.| .|-|+.|+++ |.+ ..=++++.|=.+
T Consensus 176 ~Rtliidd~~w~Y~~g~w---------------------------------~~yF~P~s~~---C~~-~~~~~~~~w~~~ 218 (526)
T 2de0_X 176 QRTLILESQNWRYATGGW---------------------------------ETVFRPVSET---CTD-RSGISTGHWSGE 218 (526)
T ss_dssp TCEEEEECTTCSSCTTCG---------------------------------GGTBCCSCSS---CCC-CCCSCCCBCCCT
T ss_pred CCEEEEECCCCCcCCCCH---------------------------------HHhhhCcCcc---ccC-CCccccCCCCCc
Confidence 999999887766532332 2233333321 222 000122222111
Q ss_pred Ccc----hHHhHHHhhccCH-----------HHHHHHHhhcCCCCCCCCCCchHHHhHHHhcCCchhHHHHHhhhhcC--
Q 008470 249 TTD----AVAAQFFLKNVHP-----------EMRNAANDLFGHPESLHAQPNVFGELMRVLISPSEDVEEAVKWVLGN-- 311 (564)
Q Consensus 249 TtD----aVa~QffLKNvhp-----------~Mr~AA~~LfG~p~~l~sRpN~FGELmr~~ISPs~dV~~AV~W~l~g-- 311 (564)
..| .|-.- .+++.|+ ++-.+-..+-|+| +==.+|++||-|+.|++.|++.|+=....
T Consensus 219 ~~~~~~~vV~~~-~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp-----~~w~~~q~~~yl~rP~~~i~~~I~~~~~~l~ 292 (526)
T 2de0_X 219 VKDKNVQVVELP-IVDSLHPRPPYLPLAVPEDLADRLVRVHGDP-----AVWWVSQFVKYLIRPQPWLEKEIEEATKKLG 292 (526)
T ss_dssp TGGGGCSEEEEC-CGGGCSSCCSCCTTCEEGGGHHHHHHHCSCH-----HHHHHHHHHHHHTCBCHHHHHHHHHHHHHHT
T ss_pred ccCCCcceEEee-ccccccccccccccccchhHHHHHHhccCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 000 00000 0011111 0111111111111 01247899999999999999999887742
Q ss_pred CCCCCceehhhhhcccc----hHHHHHHHHHHHHHHHhc---ccCCCCeEEEEeCChhhhhhhccchhhhhhhheecHHh
Q 008470 312 GVDPDISLHMRMLTNRS----VRAVQAAVKCIRKVVNSL---NLTSRPKTVIVSDTPSFAKTITPNISEFAEVLYFDYKA 384 (564)
Q Consensus 312 g~~PDIslHmRMl~nRs----~rA~~AA~~Ci~k~~~~~---hl~~rPrVvvVSDTPs~vk~i~~~i~efaeVl~FDYk~ 384 (564)
-..|=|.+|.|.=-.-. .-....-...+...++.+ .....++|.|-||.|.++++++..-. ||..
T Consensus 293 ~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDDp~v~~e~k~~~p--------~~~~ 364 (526)
T 2de0_X 293 FKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTKYP--------NYEF 364 (526)
T ss_dssp CCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESCHHHHHHHHHHCT--------TSEE
T ss_pred CCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCCHHHHHHHHHhCC--------CCEE
Confidence 36788999999653311 112222233334333322 23467899999999999998864222 2221
Q ss_pred hhccccccCCCCCCccccccccCCCCchhHHHHHHHhccccceeeecccccccccHHHHHHHHHHhhh
Q 008470 385 FRGNISHDVNRLPSLEFRAKDWGPAPRWVAFVDFFLASRAKHAVVSGAFRRVGTTYAQLIAALAAANS 452 (564)
Q Consensus 385 f~~~~~~~~~~~~~ldfR~rDWG~aPRWVAfVDFFLAsrAk~aVVSGAhrRVgTTYAQLiAALAAAn~ 452 (564)
+ ++. .+.-...+.-|. ...--=-+++|.+|+|+++|.|.|-. .|+..|++.|...+.
T Consensus 365 ~-~d~--~~~~~a~~~~R~---s~~~l~~~l~DL~lLs~cd~~Vgt~s-----S~~srla~~l~~~~~ 421 (526)
T 2de0_X 365 I-SDN--SISWSAGLHNRY---TENSLRGVILDIHFLSQADFLVCTFS-----SQVCRVAYEIMQTLH 421 (526)
T ss_dssp E-CCC--CSSCSSGGGGGT---CCTHHHHHHHHHHHHHHSSEEEECTT-----SHHHHHHHHHHTTSS
T ss_pred e-cCc--ccccccCccccc---cHHHHHHHHHHHHHHhcCCeeecCCC-----CHHHHHHHHHhcCcC
Confidence 1 110 000000111111 00000137999999999999987643 488888888766554
|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00