Citrus Sinensis ID: 008480
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | 2.2.26 [Sep-21-2011] | |||||||
| P28723 | 637 | Formate--tetrahydrofolate | N/A | no | 0.962 | 0.852 | 0.883 | 0.0 | |
| Q9SPK5 | 634 | Formate--tetrahydrofolate | yes | no | 0.960 | 0.854 | 0.887 | 0.0 | |
| P27653 | 935 | C-1-tetrahydrofolate synt | yes | no | 0.948 | 0.572 | 0.665 | 0.0 | |
| P11586 | 935 | C-1-tetrahydrofolate synt | yes | no | 0.946 | 0.571 | 0.675 | 0.0 | |
| Q922D8 | 935 | C-1-tetrahydrofolate synt | yes | no | 0.948 | 0.572 | 0.674 | 0.0 | |
| Q5R8P0 | 935 | C-1-tetrahydrofolate synt | yes | no | 0.946 | 0.571 | 0.672 | 0.0 | |
| Q6UB35 | 978 | Monofunctional C1-tetrahy | no | no | 0.953 | 0.550 | 0.656 | 0.0 | |
| Q0VCR7 | 975 | Monofunctional C1-tetrahy | no | no | 0.953 | 0.551 | 0.645 | 0.0 | |
| Q3V3R1 | 977 | Monofunctional C1-tetrahy | no | no | 0.953 | 0.550 | 0.646 | 0.0 | |
| Q27772 | 933 | C-1-tetrahydrofolate synt | N/A | no | 0.964 | 0.583 | 0.601 | 0.0 |
| >sp|P28723|FTHS_SPIOL Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3 | Back alignment and function desciption |
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Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/543 (88%), Positives = 523/543 (96%)
Query: 3 SSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDE 62
SSKTVRKL+V +PVPADIDIAN+VEPLHI++IA +LNL P HYDLYGKYKAKVLLSVLDE
Sbjct: 4 SSKTVRKLEVATPVPADIDIANAVEPLHIADIAADLNLSPRHYDLYGKYKAKVLLSVLDE 63
Query: 63 LEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122
++ + DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG
Sbjct: 64 VQETQDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 123
Query: 123 GAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPP 182
GAAGGGYSQVIPMDEFNLHLTGDIHAITA+NNLLAAAIDTR+FHE++QSDKALFNRLCPP
Sbjct: 124 GAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRMFHESTQSDKALFNRLCPP 183
Query: 183 NKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFL 242
NKEG+R+F NIM RRLKKLGI KT P+DLTPEE+ +FARLDIDP SITWRRVMDVNDRFL
Sbjct: 184 NKEGKRTFCNIMHRRLKKLGIDKTNPDDLTPEEVTKFARLDIDPDSITWRRVMDVNDRFL 243
Query: 243 RKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPIT 302
RKI++GQGP+EKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAG+PIT
Sbjct: 244 RKISVGQGPDEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPIT 303
Query: 303 ADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGP 362
ADDLG+GGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGP
Sbjct: 304 ADDLGLGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGP 363
Query: 363 GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDH 422
GGFVVTEAGFG+DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGPQVVAGKPLD
Sbjct: 364 GGFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPQVVAGKPLDR 423
Query: 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD 482
AYL ENV LVEAGCVNLARHI NTKAYG+NVVVA+NMF++D++AELNAV+ AAM AGAFD
Sbjct: 424 AYLTENVGLVEAGCVNLARHIINTKAYGSNVVVAINMFSSDTEAELNAVKKAAMDAGAFD 483
Query: 483 AVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEY 542
AV+C+HHAHGGKGAVDLGIAVQ+ACENVTQPL+FLYPLD+SIKEKI+ IA+SYGA+GVEY
Sbjct: 484 AVICTHHAHGGKGAVDLGIAVQKACENVTQPLRFLYPLDISIKEKIEAIAKSYGAAGVEY 543
Query: 543 SEE 545
SE+
Sbjct: 544 SEQ 546
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Spinacia oleracea (taxid: 3562) EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3 |
| >sp|Q9SPK5|FTHS_ARATH Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1 | Back alignment and function description |
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| >sp|P27653|C1TC_RAT C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3 | Back alignment and function description |
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| >sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q922D8|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q5R8P0|C1TC_PONAB C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1 | Back alignment and function description |
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| >sp|Q0VCR7|C1TM_BOVIN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2 | Back alignment and function description |
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| >sp|Q3V3R1|C1TM_MOUSE Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2 | Back alignment and function description |
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| >sp|Q27772|C1TC_SPOFR C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | ||||||
| 225435632 | 637 | PREDICTED: formate--tetrahydrofolate lig | 0.962 | 0.852 | 0.924 | 0.0 | |
| 224052994 | 636 | 10-formyltetrahydrofolate synthetase [Po | 0.966 | 0.856 | 0.913 | 0.0 | |
| 297847394 | 634 | 10-formyltetrahydrofolate synthetase [Ar | 0.960 | 0.854 | 0.892 | 0.0 | |
| 2507455 | 637 | RecName: Full=Formate--tetrahydrofolate | 0.962 | 0.852 | 0.883 | 0.0 | |
| 18403095 | 634 | Formate--tetrahydrofolate ligase [Arabid | 0.960 | 0.854 | 0.887 | 0.0 | |
| 224073194 | 636 | 10-formyltetrahydrofolate synthetase [Po | 0.966 | 0.856 | 0.915 | 0.0 | |
| 449462581 | 636 | PREDICTED: formate--tetrahydrofolate lig | 0.966 | 0.856 | 0.922 | 0.0 | |
| 356576871 | 636 | PREDICTED: formate--tetrahydrofolate lig | 0.966 | 0.856 | 0.904 | 0.0 | |
| 356536528 | 636 | PREDICTED: formate--tetrahydrofolate lig | 0.966 | 0.856 | 0.900 | 0.0 | |
| 357445035 | 743 | Formate-tetrahydrofolate ligase [Medicag | 0.953 | 0.724 | 0.821 | 0.0 |
| >gi|225435632|ref|XP_002285654.1| PREDICTED: formate--tetrahydrofolate ligase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/543 (92%), Positives = 526/543 (96%)
Query: 3 SSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDE 62
SSKT RKL V+SPVPADIDIANSV P HISEIAQELNL P+HYDLYGKYKAKVLLSVLD+
Sbjct: 4 SSKTHRKLNVLSPVPADIDIANSVVPFHISEIAQELNLDPSHYDLYGKYKAKVLLSVLDD 63
Query: 63 LEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122
L+GS DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG
Sbjct: 64 LQGSGDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 123
Query: 123 GAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPP 182
GAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPP
Sbjct: 124 GAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPP 183
Query: 183 NKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFL 242
NKEG+RSFS+IMFRRL KLGISKTKPEDLTPEE+ +FARLDIDP SITWRRVMDVNDRFL
Sbjct: 184 NKEGKRSFSSIMFRRLNKLGISKTKPEDLTPEEVKKFARLDIDPDSITWRRVMDVNDRFL 243
Query: 243 RKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPIT 302
RKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAG+PIT
Sbjct: 244 RKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPIT 303
Query: 303 ADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGP 362
ADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSS+VADKIALKLVGP
Sbjct: 304 ADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSVVADKIALKLVGP 363
Query: 363 GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDH 422
GGFVVTEAGFGADIG EKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGP+VVAGKPLD
Sbjct: 364 GGFVVTEAGFGADIGTEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPEVVAGKPLDR 423
Query: 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD 482
AYL ENVALVEAGCVNLARHI+NT+AYG NVVVAVNMF+TDS+AELNAV+NAA+ AGA+D
Sbjct: 424 AYLTENVALVEAGCVNLARHISNTRAYGVNVVVAVNMFSTDSEAELNAVKNAALFAGAYD 483
Query: 483 AVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEY 542
AVVC+HHAHGG+GAVDLGIAVQRACE V QPLKFLYPLD+SIKEKI+ IA+SYGASGVEY
Sbjct: 484 AVVCTHHAHGGRGAVDLGIAVQRACETVAQPLKFLYPLDISIKEKIEAIAKSYGASGVEY 543
Query: 543 SEE 545
SE+
Sbjct: 544 SEQ 546
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224052994|ref|XP_002297654.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi|222844912|gb|EEE82459.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297847394|ref|XP_002891578.1| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297337420|gb|EFH67837.1| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|2507455|sp|P28723.3|FTHS_SPIOL RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|170145|gb|AAA34046.1| 10-formyltetrahydrofolate synthetase [Spinacia oleracea] | Back alignment and taxonomy information |
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| >gi|18403095|ref|NP_564571.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] gi|68052257|sp|Q9SPK5.1|FTHS_ARATH RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|5921663|gb|AAD56290.1|AF162279_1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|9454559|gb|AAF87882.1|AC012561_15 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|12322329|gb|AAG51185.1|AC079279_6 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|15451114|gb|AAK96828.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|20148441|gb|AAM10111.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|332194434|gb|AEE32555.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|224073194|ref|XP_002304017.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi|222841449|gb|EEE78996.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449462581|ref|XP_004149019.1| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus] gi|449502199|ref|XP_004161571.1| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356576871|ref|XP_003556553.1| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356536528|ref|XP_003536789.1| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357445035|ref|XP_003592795.1| Formate-tetrahydrofolate ligase [Medicago truncatula] gi|355481843|gb|AES63046.1| Formate-tetrahydrofolate ligase [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 564 | ||||||
| TAIR|locus:2008101 | 634 | THFS "10-formyltetrahydrofolat | 0.960 | 0.854 | 0.822 | 4.9e-243 | |
| DICTYBASE|DDB_G0290397 | 638 | fthS "formyltetrahydrofolate s | 0.955 | 0.844 | 0.642 | 3.8e-181 | |
| UNIPROTKB|F5H2F4 | 1020 | MTHFD1 "C-1-tetrahydrofolate s | 0.952 | 0.526 | 0.623 | 4e-170 | |
| UNIPROTKB|G3V2B8 | 935 | MTHFD1 "C-1-tetrahydrofolate s | 0.952 | 0.574 | 0.623 | 4e-170 | |
| UNIPROTKB|P11586 | 935 | MTHFD1 "C-1-tetrahydrofolate s | 0.952 | 0.574 | 0.623 | 4e-170 | |
| UNIPROTKB|F1SA74 | 930 | MTHFD1 "Uncharacterized protei | 0.953 | 0.578 | 0.622 | 2.8e-169 | |
| UNIPROTKB|A4FUD0 | 935 | MTHFD1 "MTHFD1 protein" [Bos t | 0.953 | 0.575 | 0.613 | 6.6e-168 | |
| MGI|MGI:1342005 | 935 | Mthfd1 "methylenetetrahydrofol | 0.948 | 0.572 | 0.620 | 6.6e-168 | |
| UNIPROTKB|E2R2W7 | 935 | MTHFD1 "Uncharacterized protei | 0.952 | 0.574 | 0.612 | 3.7e-167 | |
| UNIPROTKB|F1PYV1 | 983 | MTHFD1 "Uncharacterized protei | 0.952 | 0.546 | 0.612 | 3.7e-167 |
| TAIR|locus:2008101 THFS "10-formyltetrahydrofolate synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2342 (829.5 bits), Expect = 4.9e-243, P = 4.9e-243
Identities = 446/542 (82%), Positives = 481/542 (88%)
Query: 4 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDEL 63
S + RKL+VVSPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS DEL
Sbjct: 2 SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDEL 61
Query: 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXX 123
+G DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA+LDKKVVTCLRQPSQGPTFGIK
Sbjct: 62 QGQEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGG 121
Query: 124 XXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPN 183
YSQVIPMDEFNLHLTGDIH RIFHE SQSDKALFNRLCPPN
Sbjct: 122 AAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPPN 181
Query: 184 KEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 243
KEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRRVMDVNDRFLR
Sbjct: 182 KEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLR 241
Query: 244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITA 303
KITIGQGPEEKGM RETGFDISVASEIMAVLALTTSL DMRERLGKMVIGNSKAGDPITA
Sbjct: 242 KITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPITA 301
Query: 304 DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG 363
DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG
Sbjct: 302 DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG 361
Query: 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHA 423
GFVVTEAGFG+DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGP VVAG+PLD A
Sbjct: 362 GFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPDVVAGRPLDRA 421
Query: 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKXXXXXXXXXXXXXXXXXX 483
Y++ENV+LVEAGCVNLA+HI+NTKAYG NV+VAVNMFATD++
Sbjct: 422 YVSENVSLVEAGCVNLAKHISNTKAYGVNVIVAVNMFATDTEAELNAVRKFSMDAGAFDA 481
Query: 484 VVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYS 543
VVCSHHAH GKGAVDLGIAV++AC+N+TQPL+FLYPLD+ IK+KI+ IA+SYGASGVEYS
Sbjct: 482 VVCSHHAHSGKGAVDLGIAVEKACQNITQPLRFLYPLDIGIKDKIEAIAKSYGASGVEYS 541
Query: 544 EE 545
++
Sbjct: 542 DQ 543
|
|
| DICTYBASE|DDB_G0290397 fthS "formyltetrahydrofolate synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F5H2F4 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3V2B8 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P11586 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SA74 MTHFD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A4FUD0 MTHFD1 "MTHFD1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1342005 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R2W7 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PYV1 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C0QAX9 | FTHS_DESAH | 6, ., 3, ., 4, ., 3 | 0.4656 | 0.8652 | 0.8257 | yes | no |
| Q1AXZ4 | FTHS1_RUBXD | 6, ., 3, ., 4, ., 3 | 0.4721 | 0.8351 | 0.8177 | yes | no |
| B8ECE1 | FTHS_SHEB2 | 6, ., 3, ., 4, ., 3 | 0.4783 | 0.8563 | 0.8327 | yes | no |
| A6WSY9 | FTHS_SHEB8 | 6, ., 3, ., 4, ., 3 | 0.4720 | 0.8563 | 0.8256 | yes | no |
| Q3ZX40 | FTHS_DEHSC | 6, ., 3, ., 4, ., 3 | 0.4580 | 0.9042 | 0.8542 | yes | no |
| A0KSN0 | FTHS_SHESA | 6, ., 3, ., 4, ., 3 | 0.4725 | 0.8386 | 0.8298 | yes | no |
| A4YAP3 | FTHS_SHEPC | 6, ., 3, ., 4, ., 3 | 0.4734 | 0.8439 | 0.8350 | yes | no |
| Q1AT39 | FTHS3_RUBXD | 6, ., 3, ., 4, ., 3 | 0.4729 | 0.8333 | 0.8202 | yes | no |
| A4J0S6 | FTHS_DESRM | 6, ., 3, ., 4, ., 3 | 0.4990 | 0.8351 | 0.8306 | yes | no |
| Q97EB3 | FTHS_CLOAB | 6, ., 3, ., 4, ., 3 | 0.4603 | 0.8226 | 0.8345 | yes | no |
| A9L3Z6 | FTHS_SHEB9 | 6, ., 3, ., 4, ., 3 | 0.4738 | 0.8563 | 0.8256 | yes | no |
| A3CZY6 | FTHS_SHEB5 | 6, ., 3, ., 4, ., 3 | 0.4776 | 0.8563 | 0.8256 | yes | no |
| Q0HMS6 | FTHS_SHESM | 6, ., 3, ., 4, ., 3 | 0.4782 | 0.8386 | 0.8298 | yes | no |
| A8FQV1 | FTHS_SHESH | 6, ., 3, ., 4, ., 3 | 0.4706 | 0.8421 | 0.8333 | yes | no |
| A8MIN1 | FTHS_ALKOO | 6, ., 3, ., 4, ., 3 | 0.4573 | 0.8173 | 0.8291 | yes | no |
| P21164 | FTHS_MOOTH | 6, ., 3, ., 4, ., 3 | 0.4684 | 0.8368 | 0.8443 | yes | no |
| B7VSJ2 | FTHS_VIBSL | 6, ., 3, ., 4, ., 3 | 0.4728 | 0.8918 | 0.8642 | yes | no |
| A5UPV2 | FTHS_ROSS1 | 6, ., 3, ., 4, ., 3 | 0.4878 | 0.8351 | 0.8351 | yes | no |
| Q6ABS5 | FTHS_PROAC | 6, ., 3, ., 4, ., 3 | 0.4552 | 0.8262 | 0.8277 | yes | no |
| A7NGQ9 | FTHS_ROSCS | 6, ., 3, ., 4, ., 3 | 0.4840 | 0.8351 | 0.8351 | yes | no |
| Q0HR05 | FTHS_SHESR | 6, ., 3, ., 4, ., 3 | 0.4782 | 0.8368 | 0.8295 | yes | no |
| B1KJC0 | FTHS_SHEWM | 6, ., 3, ., 4, ., 3 | 0.4661 | 0.8510 | 0.8421 | yes | no |
| A1RFN3 | FTHS_SHESW | 6, ., 3, ., 4, ., 3 | 0.4734 | 0.8439 | 0.8350 | yes | no |
| P28723 | FTHS_SPIOL | 6, ., 3, ., 4, ., 3 | 0.8839 | 0.9627 | 0.8524 | N/A | no |
| Q3Z8K3 | FTHS_DEHE1 | 6, ., 3, ., 4, ., 3 | 0.4803 | 0.8475 | 0.8006 | yes | no |
| Q3A9K2 | FTHS_CARHZ | 6, ., 3, ., 4, ., 3 | 0.4662 | 0.8262 | 0.8381 | yes | no |
| A0PXN0 | FTHS_CLONN | 6, ., 3, ., 4, ., 3 | 0.4622 | 0.8226 | 0.8345 | yes | no |
| Q8EJA7 | FTHS_SHEON | 6, ., 3, ., 4, ., 3 | 0.4657 | 0.8404 | 0.8315 | yes | no |
| A4FL80 | FTHS_SACEN | 6, ., 3, ., 4, ., 3 | 0.4933 | 0.8333 | 0.8318 | yes | no |
| Q1AVP8 | FTHS2_RUBXD | 6, ., 3, ., 4, ., 3 | 0.4721 | 0.8351 | 0.8177 | yes | no |
| Q6AL19 | FTHS_DESPS | 6, ., 3, ., 4, ., 3 | 0.482 | 0.8031 | 0.8132 | yes | no |
| Q9SPK5 | FTHS_ARATH | 6, ., 3, ., 4, ., 3 | 0.8874 | 0.9609 | 0.8548 | yes | no |
| B2TI29 | FTHS_CLOBB | 6, ., 3, ., 4, ., 3 | 0.4595 | 0.8244 | 0.8363 | yes | no |
| A3QA17 | FTHS_SHELP | 6, ., 3, ., 4, ., 3 | 0.4605 | 0.8404 | 0.8404 | yes | no |
| Q2RM91 | FTHS_MOOTA | 6, ., 3, ., 4, ., 3 | 0.4684 | 0.8368 | 0.8443 | yes | no |
| B5FG96 | FTHS_VIBFM | 6, ., 3, ., 4, ., 3 | 0.4577 | 0.8599 | 0.8333 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.4 | 0.983 |
| 3rd Layer | 3.5.4.9 | 0.824 |
| 3rd Layer | 3.5.4 | 0.766 |
| 3rd Layer | 1.5.1 | 0.766 |
| 3rd Layer | 6.3.4.3 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 564 | |||
| PLN02759 | 637 | PLN02759, PLN02759, Formate--tetrahydrofolate liga | 0.0 | |
| PTZ00386 | 625 | PTZ00386, PTZ00386, formyl tetrahydrofolate synthe | 0.0 | |
| pfam01268 | 557 | pfam01268, FTHFS, Formate--tetrahydrofolate ligase | 0.0 | |
| cd00477 | 524 | cd00477, FTHFS, Formyltetrahydrofolate synthetase | 0.0 | |
| COG2759 | 554 | COG2759, MIS1, Formyltetrahydrofolate synthetase [ | 0.0 | |
| PRK13505 | 557 | PRK13505, PRK13505, formate--tetrahydrofolate liga | 0.0 | |
| PRK13506 | 578 | PRK13506, PRK13506, formate--tetrahydrofolate liga | 0.0 | |
| PRK13507 | 587 | PRK13507, PRK13507, formate--tetrahydrofolate liga | 0.0 |
| >gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase | Back alignment and domain information |
|---|
Score = 1083 bits (2802), Expect = 0.0
Identities = 473/549 (86%), Positives = 509/549 (92%), Gaps = 1/549 (0%)
Query: 1 MASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVL 60
M S + RKL+V SPVPADIDIA SVEPLHISEIA+ L L P+ YDLYGKYKAKVLLSV
Sbjct: 1 MTMSSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVR 60
Query: 61 DELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120
D L G+ DGYYVVV GITPTPLGEGKSTTT+GLCQALGA+LDKKVVTCLRQPSQGPTFGI
Sbjct: 61 DRLAGAPDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGI 120
Query: 121 KGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLC 180
KGGAAGGGYSQVIPM+EFNLHLTGDIHAITAANNLLAAAIDTR+FHEA+QSDKALFNRLC
Sbjct: 121 KGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQSDKALFNRLC 180
Query: 181 PPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDR 240
P NKEG+RSF+ +MFRRLKKLGISKT P++LTPEE +FARLDIDPASITWRRVMDVNDR
Sbjct: 181 PANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDR 240
Query: 241 FLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP 300
FLRKIT+GQGPEEKGM RETGFDI+VASEIMAVLALTTSLADMRERLGKMVIGNSKAG+P
Sbjct: 241 FLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEP 300
Query: 301 ITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLV 360
+TADDLGVGGALTVLMKDAI+PTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD+IALKLV
Sbjct: 301 VTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLV 360
Query: 361 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPL 420
GPGGFVVTEAGFGADIG EKFMNIKCRYSGL PQCAVIVAT+RALKMHGGGP VVAGKPL
Sbjct: 361 GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPL 420
Query: 421 DHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGA 480
DHAY ENV LVEAGCVNLARHI NTK+YG NVVVA+NMFATD++AEL AVR AA+AAGA
Sbjct: 421 DHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGA 480
Query: 481 FDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASG 539
FDAV+C+HHAHGGKGAVDLG AVQ+ACE +QP KFLYPLD+SIKEKI+ IA+ SYGA G
Sbjct: 481 FDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADG 540
Query: 540 VEYSEEVNA 548
VEYSE+ A
Sbjct: 541 VEYSEQAEA 549
|
Length = 637 |
| >gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase | Back alignment and domain information |
|---|
| >gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate | Back alignment and domain information |
|---|
| >gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| PLN02759 | 637 | Formate--tetrahydrofolate ligase | 100.0 | |
| PTZ00386 | 625 | formyl tetrahydrofolate synthetase; Provisional | 100.0 | |
| PRK13507 | 587 | formate--tetrahydrofolate ligase; Provisional | 100.0 | |
| PF01268 | 557 | FTHFS: Formate--tetrahydrofolate ligase; InterPro: | 100.0 | |
| COG2759 | 554 | MIS1 Formyltetrahydrofolate synthetase [Nucleotide | 100.0 | |
| KOG4230 | 935 | consensus C1-tetrahydrofolate synthase [Coenzyme t | 100.0 | |
| PRK13506 | 578 | formate--tetrahydrofolate ligase; Provisional | 100.0 | |
| PRK13505 | 557 | formate--tetrahydrofolate ligase; Provisional | 100.0 | |
| cd00477 | 524 | FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca | 100.0 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 96.8 | |
| PRK11519 | 719 | tyrosine kinase; Provisional | 96.01 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 95.95 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 95.9 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 95.47 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 95.41 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinas | 95.2 | |
| PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 95.19 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 95.16 | |
| cd02033 | 329 | BchX Chlorophyllide reductase converts chlorophyll | 94.98 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 94.94 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 94.63 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 94.57 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [C | 94.5 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 93.9 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 93.57 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 93.32 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 93.28 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 93.28 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 93.0 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 92.93 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 92.26 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 92.18 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 92.01 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 91.77 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 91.51 | |
| PF02374 | 305 | ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ | 91.48 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 91.41 | |
| PLN02924 | 220 | thymidylate kinase | 91.29 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 91.28 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 91.2 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 91.18 | |
| PRK00698 | 205 | tmk thymidylate kinase; Validated | 91.17 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 90.9 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 90.5 | |
| PRK10037 | 250 | cell division protein; Provisional | 90.33 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 90.32 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 90.09 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 90.05 | |
| cd01672 | 200 | TMPK Thymidine monophosphate kinase (TMPK), also k | 90.0 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 89.95 | |
| COG0125 | 208 | Tmk Thymidylate kinase [Nucleotide transport and m | 89.86 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 89.82 | |
| PRK11670 | 369 | antiporter inner membrane protein; Provisional | 89.77 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 89.72 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 89.63 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 89.59 | |
| PRK10646 | 153 | ADP-binding protein; Provisional | 89.35 | |
| TIGR00041 | 195 | DTMP_kinase thymidylate kinase. Function: phosphor | 89.18 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 89.17 | |
| PF09140 | 261 | MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi | 89.11 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 89.11 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 88.97 | |
| PRK13973 | 213 | thymidylate kinase; Provisional | 88.67 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 88.46 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 88.21 | |
| COG0802 | 149 | Predicted ATPase or kinase [General function predi | 88.11 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 88.01 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 87.85 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 87.62 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 87.57 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 87.57 | |
| PRK13768 | 253 | GTPase; Provisional | 87.28 | |
| TIGR02016 | 296 | BchX chlorophyllide reductase iron protein subunit | 87.12 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 86.92 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 86.88 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 86.32 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 86.01 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 85.94 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 85.83 | |
| PF02223 | 186 | Thymidylate_kin: Thymidylate kinase; InterPro: IPR | 85.18 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 85.16 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 84.88 | |
| PRK13236 | 296 | nitrogenase reductase; Reviewed | 84.87 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 84.75 | |
| COG0003 | 322 | ArsA Predicted ATPase involved in chromosome parti | 84.67 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 84.64 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 84.6 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 84.51 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 84.18 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 83.93 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 83.63 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 83.43 | |
| PRK13976 | 209 | thymidylate kinase; Provisional | 83.28 | |
| cd01822 | 177 | Lysophospholipase_L1_like Lysophospholipase L1-lik | 83.19 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 82.98 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 82.83 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 82.58 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 82.29 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 81.95 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 81.92 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 81.6 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 81.4 | |
| COG1192 | 259 | Soj ATPases involved in chromosome partitioning [C | 81.23 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 80.6 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 80.5 | |
| PRK07933 | 213 | thymidylate kinase; Validated | 80.31 |
| >PLN02759 Formate--tetrahydrofolate ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-251 Score=1984.91 Aligned_cols=555 Identities=85% Similarity=1.292 Sum_probs=543.2
Q ss_pred CCCCcccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCC
Q 008480 2 ASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTP 81 (564)
Q Consensus 2 ~~~~~~~~~~~~~~m~sDieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP 81 (564)
.-|+...++.++.||+|||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||
T Consensus 2 ~~~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP 81 (637)
T PLN02759 2 TMSSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTP 81 (637)
T ss_pred CCcCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCC
Confidence 33444556777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHhhhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHH
Q 008480 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAID 161 (564)
Q Consensus 82 ~GEGKtTttIGL~qaL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~id 161 (564)
+|||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||
T Consensus 82 ~GEGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~id 161 (637)
T PLN02759 82 LGEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAID 161 (637)
T ss_pred CCCCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999997569999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccc
Q 008480 162 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRF 241 (564)
Q Consensus 162 n~i~~~n~~~~~~~~~rl~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~ 241 (564)
|||||||+|+|++||+||||..++|+|+|++.|||||+||||+|+||++||||||++|++|+|||++|+|+||||||||+
T Consensus 162 n~i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~ 241 (637)
T PLN02759 162 TRVFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRF 241 (637)
T ss_pred HHHhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCCCCcceecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccC
Q 008480 242 LRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAIN 321 (564)
Q Consensus 242 LR~I~iGlg~~~~G~~r~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAik 321 (564)
||+|+||+|+++||++||+|||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||
T Consensus 242 LR~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAik 321 (637)
T PLN02759 242 LRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIH 321 (637)
T ss_pred hhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccceecCceeEEeccccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEee
Q 008480 322 PTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 401 (564)
Q Consensus 322 PNLvQTlEgtPa~vHgGPFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaT 401 (564)
||||||+||||||||||||||||||||||||||+||||+|.+||||||||||||||||||||||||.+|++|||||||||
T Consensus 322 PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaT 401 (637)
T PLN02759 322 PTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVAT 401 (637)
T ss_pred ccceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCCCccCCCCCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCC
Q 008480 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (564)
Q Consensus 402 vRALK~HGG~~~~~~g~PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~ 481 (564)
|||||||||++..++|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+++|+.
T Consensus 402 vRALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~ 481 (637)
T PLN02759 402 VRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAF 481 (637)
T ss_pred hHHHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred eEEEcCccccCccchHHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhccccc
Q 008480 482 DAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSIL 556 (564)
Q Consensus 482 ~~~vs~~wakGGeGa~eLA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l 556 (564)
++++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+
T Consensus 482 ~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~eKIetIAkeIYGAd~VefS~~AkkqLk~ie~l 557 (637)
T PLN02759 482 DAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMYTRQ 557 (637)
T ss_pred cEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHc
Confidence 4999999999999999999999999986467899999999999999999999 99999999999999999999988
|
|
| >PTZ00386 formyl tetrahydrofolate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK13507 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
| >PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6 | Back alignment and domain information |
|---|
| >COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13506 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
| >PRK13505 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
| >cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate | Back alignment and domain information |
|---|
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
| >PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
| >PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B | Back alignment and domain information |
|---|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
| >PLN02924 thymidylate kinase | Back alignment and domain information |
|---|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
| >PRK00698 tmk thymidylate kinase; Validated | Back alignment and domain information |
|---|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
| >cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor | Back alignment and domain information |
|---|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
| >COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
| >PRK11670 antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK10646 ADP-binding protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00041 DTMP_kinase thymidylate kinase | Back alignment and domain information |
|---|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
| >PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments | Back alignment and domain information |
|---|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK13973 thymidylate kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
| >COG0802 Predicted ATPase or kinase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
| >PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2 | Back alignment and domain information |
|---|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
| >COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
| >PRK13976 thymidylate kinase; Provisional | Back alignment and domain information |
|---|
| >cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases | Back alignment and domain information |
|---|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
| >PRK07933 thymidylate kinase; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 564 | ||||
| 1fpm_A | 557 | Monovalent Cation Binding Sites In N10-formyltetrah | 2e-80 | ||
| 1eg7_A | 557 | The Crystal Structure Of Formyltetrahydrofolate Syn | 1e-79 | ||
| 3do6_A | 543 | Crystal Structure Of Putative Formyltetrahydrofolat | 2e-61 | ||
| 2eo2_A | 71 | Solution Structure Of The Insertion Region (510-573 | 6e-16 |
| >pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557 | Back alignment and structure |
|
| >pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557 | Back alignment and structure |
| >pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A Resolution Length = 543 | Back alignment and structure |
| >pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of Fthfs Domain From Mouse Methylenetetrahydrofolate Dehydrogenase (Nadp+ Dependent) 1-Like Protein Length = 71 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543 | Back alignment and structure |
|---|
| >2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 71 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| 3do6_A | 543 | Formate--tetrahydrofolate ligase; TM1766, putative | 100.0 | |
| 3pzx_A | 557 | Formate--tetrahydrofolate ligase; HET: TOE; 2.20A | 100.0 | |
| 2eo2_A | 71 | Adult MALE hypothalamus cDNA, riken FULL-length en | 99.96 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 97.04 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 96.94 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 96.57 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 95.64 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 95.5 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 95.38 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 95.25 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 95.02 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 94.7 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 94.53 | |
| 2woo_A | 329 | ATPase GET3; tail-anchored, membrane protein, targ | 94.51 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 94.24 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.2 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 94.16 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 93.96 | |
| 2woj_A | 354 | ATPase GET3; tail-anchored, membrane protein, targ | 93.93 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 93.73 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.7 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.65 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.47 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.45 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 93.39 | |
| 3igf_A | 374 | ALL4481 protein; two-domained protein consisting o | 92.64 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 92.4 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 92.27 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 92.25 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 91.52 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 91.4 | |
| 3io3_A | 348 | DEHA2D07832P; chaperone, membrane traffic, ATPase; | 91.24 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 91.23 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 91.23 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 91.12 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 90.94 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 90.84 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 90.79 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 90.77 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 90.46 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 90.23 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 90.17 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 89.97 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 89.71 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 88.82 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 88.53 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 88.36 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 87.69 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 87.61 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 87.41 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 86.71 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 86.64 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 86.05 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 86.01 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 85.92 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 85.86 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 85.15 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 85.09 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 84.74 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 84.68 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 84.67 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 84.04 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 83.78 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 83.64 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 83.62 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 82.99 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 82.75 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 82.37 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 82.28 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 82.08 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 81.86 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 81.73 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 81.5 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 81.48 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 81.3 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 81.16 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 80.8 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 80.74 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 80.6 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 80.2 |
| >3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-229 Score=1788.05 Aligned_cols=465 Identities=45% Similarity=0.732 Sum_probs=458.0
Q ss_pred CCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCceEE
Q 008480 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (564)
Q Consensus 28 ~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~~~lgk~~~~ 107 (564)
|+||++||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|||+ |+||++++
T Consensus 2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~-~lgk~~~~ 80 (543)
T 3do6_A 2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLN-RIGKKSIV 80 (543)
T ss_dssp CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH-hcCCeeEE
Confidence 78999999999999999999999999999999999998999999999999999999999999999999995 99999999
Q ss_pred EecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCC
Q 008480 108 CLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGE 187 (564)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~rl~~~~~~~~ 187 (564)
|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 ~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn------------------- 141 (543)
T 3do6_A 81 TLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN------------------- 141 (543)
T ss_dssp EECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred EEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeeh
Q 008480 188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVA 267 (564)
Q Consensus 188 r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r~~gFdItvA 267 (564)
+|+|||++|+||||||||||+||+|+||||++.||+|||||||||||
T Consensus 142 ---------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvA 188 (543)
T 3do6_A 142 ---------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAA 188 (543)
T ss_dssp ---------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGG
T ss_pred ---------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEeh
Confidence 79999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEEeccccchhcccC
Q 008480 268 SEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGN 347 (564)
Q Consensus 268 SEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~ 347 (564)
||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||||||||||||||
T Consensus 189 SEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGc 268 (543)
T 3do6_A 189 SEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGT 268 (543)
T ss_dssp SHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCB
T ss_pred hhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCCCCccccccc
Q 008480 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (564)
Q Consensus 348 nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~PLp~~l~~e 427 (564)
|||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++ ++|.+|
T Consensus 269 nSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~e 337 (543)
T 3do6_A 269 NSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEE 337 (543)
T ss_dssp CCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSC
T ss_pred hHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCcc
Confidence 9999999999999 99999999999999999999999999999999999999999999999986 688899
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHHHHHHHHHHh
Q 008480 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (564)
Q Consensus 428 Nl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~eLA~~Vvea~ 507 (564)
|+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|+++||++|+++|
T Consensus 338 nl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 338 NLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999995 9999999999999999999999999
Q ss_pred hcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 508 ENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 508 e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
+ +++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+ |+.
T Consensus 417 e--~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~-G~~ 467 (543)
T 3do6_A 417 K--DVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKH-GFD 467 (543)
T ss_dssp C--CCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHHHHHT-TCT
T ss_pred c--CCCcccccCCCCCHHHHHHHHHHHHcCCCeEEECHHHHHHHHHHHhc-CCC
Confidence 7 47899999999999999999999 99999999999999999999997 554
|
| >2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
| >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
| >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* | Back alignment and structure |
|---|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
| >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} | Back alignment and structure |
|---|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 564 | ||||
| d1eg7a_ | 549 | c.37.1.10 (A:) Formyltetrahydrofolate synthetase { | 0.0 |
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Score = 554 bits (1428), Expect = 0.0
Identities = 244/529 (46%), Positives = 316/529 (59%), Gaps = 68/529 (12%)
Query: 19 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGIT 78
DI+IA + + + E+A+ L ++ + +LYGKYKAK+ L V L+ DG ++V IT
Sbjct: 1 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAIT 60
Query: 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEF 138
PTP GEGK+TT+VGL AL L K+V+ CLR+PS GP+FGIKGGAAGGGY+QV+PM++
Sbjct: 61 PTPAGEGKTTTSVGLTDALAR-LGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDI 119
Query: 139 NLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRL 198
NLH TGDIHA+T A+NLLAA +D +
Sbjct: 120 NLHFTGDIHAVTYAHNLLAAMVDNHLQQGN------------------------------ 149
Query: 199 KKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVR 258
L+IDP +ITWRRV+D+N+R LR I IG G + G+ R
Sbjct: 150 ----------------------VLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPR 187
Query: 259 ETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKD 318
ETGFDISVASE+MA L L + L D++ER + V+G + G P+TA DL G++ +LMKD
Sbjct: 188 ETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKD 247
Query: 319 AINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGA 378
AI P L+QTLE TP +H GPFANIAHG +SI+A K ALKL +VVTEAGFGAD+GA
Sbjct: 248 AIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGA 304
Query: 379 EKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438
EKF ++KCRY+G P VIVAT+RALKMHGG P EN+ + G N
Sbjct: 305 EKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENLEALREGFAN 356
Query: 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 498
L +HI N +G VVA+N F TD++AELN + A A V A GG+G ++
Sbjct: 357 LEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKA---GAEVALSWAKGGEGGLE 413
Query: 499 LGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS-YGASGVEYSEEV 546
L V + E+ LY LD+SIK+KI IA YGA GV Y+ E
Sbjct: 414 LARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEA 462
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 564 | |||
| d1eg7a_ | 549 | Formyltetrahydrofolate synthetase {Moorella thermo | 100.0 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 97.09 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.15 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 95.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.22 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 94.84 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 93.91 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.53 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.81 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 92.51 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.93 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.98 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 90.81 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.71 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.43 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.08 | |
| d1b5ta_ | 275 | Methylenetetrahydrofolate reductase {Escherichia c | 89.54 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.32 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 88.55 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 88.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.39 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.08 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 87.82 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 87.69 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.15 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.13 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.12 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 86.57 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 85.4 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 84.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 84.14 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 82.14 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 82.01 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 81.8 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 81.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 80.66 | |
| d1v93a_ | 292 | Methylenetetrahydrofolate reductase {Thermus therm | 80.65 |
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Probab=100.00 E-value=3e-226 Score=1781.21 Aligned_cols=474 Identities=52% Similarity=0.861 Sum_probs=465.6
Q ss_pred hHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 008480 19 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (564)
Q Consensus 19 DieIa~~~~~~pI~~ia~~lgl~~~~l~~YG~~kAKi~~~~l~~~~~~~~gklIlVTaitPTP~GEGKtTttIGL~qaL~ 98 (564)
||||||+++|+||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||+|||||||||||+|||
T Consensus 1 D~eIa~~~~~~~I~~ia~~~gl~~~~~~~yG~~kaKv~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~aL- 79 (549)
T d1eg7a_ 1 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDAL- 79 (549)
T ss_dssp CCSTTCCCCCCCHHHHHHTTTCCGGGEEESSSSCEEECTHHHHHHTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHH-
T ss_pred ChhhHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceEecHHHHHhhccCCCceEEEEEeCCCCCCCCCcceeHHhHHHHH-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhc
Q 008480 99 AFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNR 178 (564)
Q Consensus 99 ~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~r 178 (564)
+++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||+|+|||||||+|
T Consensus 80 ~~lgk~~~~~lRePSlGP~fGiKGGAaGGG~sqv~Pme~inLhftGD~hAitaA~NLl~A~idn~i~~gn---------- 149 (549)
T d1eg7a_ 80 ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN---------- 149 (549)
T ss_dssp HHTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEECHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHhCCceEEEEecCCCCCccccccCCCCCCeeeeecchhhhcccCCcHHHHHHHHHHHHHHHHhhhcccc----------
Confidence 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcce
Q 008480 179 LCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVR 258 (564)
Q Consensus 179 l~~~~~~~~r~~~~~~~~rl~~l~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r 258 (564)
+|+|||++|+||||||||||+||+|+||+|++.+|+||
T Consensus 150 ------------------------------------------~L~iDp~~I~w~Rv~D~NDR~LR~i~vglgg~~~G~~r 187 (549)
T d1eg7a_ 150 ------------------------------------------VLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPR 187 (549)
T ss_dssp ------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSTTSCCCE
T ss_pred ------------------------------------------cCCCCCceeeeceeecchhhhhhheEEeccccCCCcce
Confidence 79999999999999999999999999999999999999
Q ss_pred ecceeeeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcCccceecCceeEEecc
Q 008480 259 ETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAG 338 (564)
Q Consensus 259 ~~gFdItvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~pVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgG 338 (564)
|+|||||||||||||||||+|++|||+|||||||||+++|+||||+||+++||||+|||||||||||||+||||+|||||
T Consensus 188 ~~gFdIT~ASEvMAIl~La~~l~DLr~Rlg~ivv~~~~~g~pv~a~DL~~~GAm~~LLkdAi~PNLvQT~EgtPa~vHgG 267 (549)
T d1eg7a_ 188 ETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGG 267 (549)
T ss_dssp EECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEEEECCC
T ss_pred ecccccchhhhheeeeeecCCHHHHHHhhcCEEeeecCCCCCcchhhcccchhHHHHHHHHHHhhhheeccCCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcccCchHHHHHHHHhhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeehhHHHhcCCCCCccCCC
Q 008480 339 PFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGK 418 (564)
Q Consensus 339 PFANIAhG~nSiiAtk~ALklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~ 418 (564)
|||||||||||||||++||+|+ ||||||||||||||||||||||||.+|++||||||||||||||||||+++
T Consensus 268 PFANIAhG~nSviAt~~al~la---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~----- 339 (549)
T d1eg7a_ 268 PFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK----- 339 (549)
T ss_dssp CCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHTTTCCG-----
T ss_pred CccccccccchHHHHHHHhhcC---CeEEEeccccCCccchhhhccccccCCCCCceEEEEeehhhhhhcCCCCh-----
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999985
Q ss_pred CCccccccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecccCCCcHHHHHHHHHHHHHcCCCeEEEcCccccCccchHH
Q 008480 419 PLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 498 (564)
Q Consensus 419 PLp~~l~~eNl~aLe~G~~NL~kHIeNi~~fGvPvVVAIN~F~tDT~aEi~~v~~~~~~~G~~~~~vs~~wakGGeGa~e 498 (564)
++|.+||++||++||+||+|||+|+++||+|||||||+|++||++||++|+++|++.|++ .|.||++||+|++|
T Consensus 340 ---~~l~~eNl~Al~~G~~NL~rHIeNi~~fGlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~---~a~~wa~GG~Ga~d 413 (549)
T d1eg7a_ 340 ---SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLE 413 (549)
T ss_dssp ---GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHTTTSEEE---EECCTTTGGGGGHH
T ss_pred ---HHcCcccHHHHHHHHHHHHHHHHhhhhcCCCeEEEeccCCccchhHHHHHHHHHhhcCcc---eeeecccCccchHH
Confidence 789999999999999999999999999999999999999999999999999999998874 46789999999999
Q ss_pred HHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHh-HhCCCceeeCHHHHHhhhcccccccCC
Q 008480 499 LGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEVNASHFVPSILHGLS 560 (564)
Q Consensus 499 LA~~Vvea~e~~~~~fk~LYd~~~~I~eKIetIA~-IYGA~~V~~S~~A~kqL~~~e~l~~~~ 560 (564)
||++|+++|++.+++|+|||++++||+|||++||+ ||||++|+||++|++||+.||.+ |+.
T Consensus 414 LA~~Vv~a~e~~~~~f~~LY~~~~~l~eKIe~IA~~IYGA~~V~~S~~A~kqL~~~e~~-G~~ 475 (549)
T d1eg7a_ 414 LARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESL-GYG 475 (549)
T ss_dssp HHHHHHHHHHHSCCCCCCSSCTTSCHHHHHHHHHHHTTCCSEEEECHHHHHHHHHHHHT-TCT
T ss_pred HHHHHHHHHhcccccccccCCccchHHHHHHHHHHHhcCCCceeeCHHHHHHHHHHHHC-CCC
Confidence 99999999987778899999999999999999999 99999999999999999999997 654
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
| >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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